Metagenome / Metatranscriptome Family F076304

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F076304
Family Type	Metagenome / Metatranscriptome
Number of Sequences	118
Average Sequence Length	59 residues
Representative Sequence	MFERHAIAIIGGALVLMALALIRPSSGMRMIVLGLLLAAAAVVGMGLGLRNLLSALTGMS
Number of Associated Samples	91
Number of Associated Scaffolds	118

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	84.75 %
% of genes near scaffold ends (potentially truncated)	27.97 %
% of genes from short scaffolds (< 2000 bps)	86.44 %
Associated GOLD sequencing projects	84
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.43

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (52.542 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (25.424 % of family members)
Environment Ontology (ENVO)	Unclassified (32.203 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (77.119 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 60.23% β-sheet: 0.00% Coil/Unstructured: 39.77%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.43
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.43
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 118 Family Scaffolds
PF05209	MinC_N	26.27
PF00378	ECH_1	11.86
PF03776	MinE	1.69
PF01656	CbiA	0.85
PF13614	AAA_31	0.85

COG ID	Name	Functional Category	% Frequency in 118 Family Scaffolds
COG0850	Septum site-determining protein MinC	Cell cycle control, cell division, chromosome partitioning [D]	26.27
COG0851	Septum formation topological specificity factor MinE	Cell cycle control, cell division, chromosome partitioning [D]	1.69

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	52.54 %
Unclassified	root	N/A	47.46 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	52.54 %
Unclassified	root	N/A	47.46 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	52.54 %
Unclassified	root	N/A	47.46 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	47.46 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	42.37 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	47.46 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	36.44 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	47.46 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	12.71 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	4.24 %
Pseudomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales	0.85 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	47.46 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	12.71 %
unclassified Rhodospirillales	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales	4.24 %
Pseudomonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae	0.85 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	0.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	47.46 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	12.71 %
Rhodospirillales bacterium URHD0088	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0088	4.24 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	0.85 %
Pseudomonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas	0.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	47.46 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	12.71 %
Rhodospirillales bacterium URHD0088	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0088	4.24 %
Pseudomonas aeruginosa group	species group	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas → Pseudomonas aeruginosa group	0.85 %
unclassified Bradyrhizobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium	0.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	47.46 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	12.71 %
Rhodospirillales bacterium URHD0088	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0088	4.24 %
Bradyrhizobium sp. C-145	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. C-145	0.85 %
Pseudomonas aeruginosa	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas → Pseudomonas aeruginosa group → Pseudomonas aeruginosa	0.85 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300003219\|JGI26341J46601_10175415	Not Available	590	Open in IMG/M
3300003505\|JGIcombinedJ51221_10028063	All Organisms → cellular organisms → Bacteria → Proteobacteria	2029	Open in IMG/M
3300003505\|JGIcombinedJ51221_10038411	Not Available	1775	Open in IMG/M
3300003505\|JGIcombinedJ51221_10241999	Not Available	733	Open in IMG/M
3300004080\|Ga0062385_10349977	All Organisms → cellular organisms → Bacteria	866	Open in IMG/M
3300004080\|Ga0062385_10380311	Not Available	838	Open in IMG/M
3300004080\|Ga0062385_11249133	Not Available	510	Open in IMG/M
3300004091\|Ga0062387_101728053	Not Available	509	Open in IMG/M
3300004152\|Ga0062386_100115649	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. C-145	2071	Open in IMG/M
3300004152\|Ga0062386_100452171	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1039	Open in IMG/M
3300005167\|Ga0066672_10534068	All Organisms → cellular organisms → Bacteria	760	Open in IMG/M
3300005167\|Ga0066672_10844940	Not Available	572	Open in IMG/M
3300005174\|Ga0066680_10841452	Not Available	549	Open in IMG/M
3300005177\|Ga0066690_10275256	All Organisms → cellular organisms → Bacteria	1133	Open in IMG/M
3300005179\|Ga0066684_10194240	Not Available	1310	Open in IMG/M
3300005179\|Ga0066684_10252522	Not Available	1158	Open in IMG/M
3300005332\|Ga0066388_102420457	Not Available	953	Open in IMG/M
3300005332\|Ga0066388_103448930	All Organisms → cellular organisms → Bacteria	807	Open in IMG/M
3300005363\|Ga0008090_15298821	All Organisms → cellular organisms → Bacteria	1292	Open in IMG/M
3300005434\|Ga0070709_10301294	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1171	Open in IMG/M
3300005435\|Ga0070714_100557350	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1098	Open in IMG/M
3300005435\|Ga0070714_100901176	Not Available	859	Open in IMG/M
3300005436\|Ga0070713_100092523	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2603	Open in IMG/M
3300005437\|Ga0070710_11172973	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	567	Open in IMG/M
3300005559\|Ga0066700_10835681	Not Available	617	Open in IMG/M
3300005560\|Ga0066670_10367663	All Organisms → cellular organisms → Bacteria → Proteobacteria	878	Open in IMG/M
3300005569\|Ga0066705_10430334	All Organisms → cellular organisms → Bacteria	826	Open in IMG/M
3300005575\|Ga0066702_10070140	All Organisms → cellular organisms → Bacteria	1935	Open in IMG/M
3300005602\|Ga0070762_10270368	All Organisms → cellular organisms → Bacteria → Proteobacteria	1063	Open in IMG/M
3300005764\|Ga0066903_102859297	All Organisms → cellular organisms → Bacteria → Proteobacteria	936	Open in IMG/M
3300006176\|Ga0070765_100511456	All Organisms → cellular organisms → Bacteria	1129	Open in IMG/M
3300006804\|Ga0079221_10591603	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	746	Open in IMG/M
3300006806\|Ga0079220_10879997	Not Available	691	Open in IMG/M
3300006893\|Ga0073928_10154876	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1844	Open in IMG/M
3300006954\|Ga0079219_11258830	Not Available	647	Open in IMG/M
3300006954\|Ga0079219_11987325	Not Available	552	Open in IMG/M
3300010359\|Ga0126376_13117049	Not Available	513	Open in IMG/M
3300010360\|Ga0126372_11438763	All Organisms → cellular organisms → Bacteria	723	Open in IMG/M
3300010360\|Ga0126372_11916415	Not Available	638	Open in IMG/M
3300010361\|Ga0126378_10243985	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1888	Open in IMG/M
3300010361\|Ga0126378_10260989	Not Available	1828	Open in IMG/M
3300010376\|Ga0126381_100358996	Not Available	2017	Open in IMG/M
3300010376\|Ga0126381_100564584	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1614	Open in IMG/M
3300010376\|Ga0126381_101185129	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1104	Open in IMG/M
3300011120\|Ga0150983_11255326	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	507	Open in IMG/M
3300012198\|Ga0137364_10216074	Not Available	1409	Open in IMG/M
3300012202\|Ga0137363_11547335	Not Available	555	Open in IMG/M
3300012582\|Ga0137358_10937579	Not Available	565	Open in IMG/M
3300012683\|Ga0137398_10853085	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	636	Open in IMG/M
3300012917\|Ga0137395_11185586	Not Available	535	Open in IMG/M
3300012924\|Ga0137413_11565019	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	538	Open in IMG/M
3300012971\|Ga0126369_10923970	Not Available	958	Open in IMG/M
3300015242\|Ga0137412_10845440	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	668	Open in IMG/M
3300015371\|Ga0132258_10231347	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	4503	Open in IMG/M
3300016270\|Ga0182036_10098221	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1984	Open in IMG/M
3300016357\|Ga0182032_10416528	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1090	Open in IMG/M
3300018433\|Ga0066667_10248998	Not Available	1345	Open in IMG/M
3300018468\|Ga0066662_10925212	Not Available	858	Open in IMG/M
3300018468\|Ga0066662_11829819	Not Available	635	Open in IMG/M
3300020579\|Ga0210407_10034983	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3736	Open in IMG/M
3300020580\|Ga0210403_10009108	All Organisms → cellular organisms → Bacteria	8148	Open in IMG/M
3300020580\|Ga0210403_10997336	Not Available	655	Open in IMG/M
3300020580\|Ga0210403_11088159	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	621	Open in IMG/M
3300020581\|Ga0210399_10060323	All Organisms → cellular organisms → Bacteria → Proteobacteria	3059	Open in IMG/M
3300020582\|Ga0210395_11020436	Not Available	612	Open in IMG/M
3300020583\|Ga0210401_10028059	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0088	5370	Open in IMG/M
3300020583\|Ga0210401_10144497	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas → Pseudomonas aeruginosa group → Pseudomonas aeruginosa	2224	Open in IMG/M
3300021088\|Ga0210404_10119489	Not Available	1352	Open in IMG/M
3300021170\|Ga0210400_11482290	Not Available	538	Open in IMG/M
3300021170\|Ga0210400_11628671	Not Available	509	Open in IMG/M
3300021171\|Ga0210405_10834059	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	704	Open in IMG/M
3300021178\|Ga0210408_10411650	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1077	Open in IMG/M
3300021178\|Ga0210408_10698360	Not Available	799	Open in IMG/M
3300021178\|Ga0210408_11266649	Not Available	560	Open in IMG/M
3300021180\|Ga0210396_11284271	Not Available	610	Open in IMG/M
3300021181\|Ga0210388_10506336	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1060	Open in IMG/M
3300021374\|Ga0213881_10056856	Not Available	1661	Open in IMG/M
3300021377\|Ga0213874_10454616	Not Available	506	Open in IMG/M
3300021403\|Ga0210397_10342708	Not Available	1106	Open in IMG/M
3300021404\|Ga0210389_10069657	Not Available	2696	Open in IMG/M
3300021404\|Ga0210389_10982209	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	655	Open in IMG/M
3300021406\|Ga0210386_10272300	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0088	1447	Open in IMG/M
3300021420\|Ga0210394_10361103	Not Available	1276	Open in IMG/M
3300021474\|Ga0210390_11359930	Not Available	567	Open in IMG/M
3300021479\|Ga0210410_10298984	Not Available	1444	Open in IMG/M
3300021560\|Ga0126371_10016555	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	6750	Open in IMG/M
3300021560\|Ga0126371_10323221	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1673	Open in IMG/M
3300021560\|Ga0126371_10363171	Not Available	1584	Open in IMG/M
3300022506\|Ga0242648_1054459	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	617	Open in IMG/M
3300022726\|Ga0242654_10254825	Not Available	630	Open in IMG/M
3300025906\|Ga0207699_10142532	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1576	Open in IMG/M
3300025916\|Ga0207663_10515753	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	930	Open in IMG/M
3300026312\|Ga0209153_1141947	Not Available	904	Open in IMG/M
3300026312\|Ga0209153_1166617	All Organisms → cellular organisms → Bacteria	804	Open in IMG/M
3300026527\|Ga0209059_1180265	Not Available	732	Open in IMG/M
3300026530\|Ga0209807_1293481	Not Available	550	Open in IMG/M
3300026538\|Ga0209056_10645116	Not Available	534	Open in IMG/M
3300026551\|Ga0209648_10013733	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0088	7075	Open in IMG/M
3300026555\|Ga0179593_1126646	All Organisms → cellular organisms → Bacteria → Proteobacteria	2814	Open in IMG/M
3300026984\|Ga0208732_1000345	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0088	2616	Open in IMG/M
3300027070\|Ga0208365_1005628	Not Available	1509	Open in IMG/M
3300027109\|Ga0208603_1015485	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1239	Open in IMG/M
3300027521\|Ga0209524_1052960	Not Available	856	Open in IMG/M
3300027583\|Ga0209527_1015066	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1676	Open in IMG/M
3300027635\|Ga0209625_1074312	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	761	Open in IMG/M
3300027737\|Ga0209038_10031993	Not Available	1564	Open in IMG/M
3300027884\|Ga0209275_10147457	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1244	Open in IMG/M
3300027903\|Ga0209488_10120810	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1971	Open in IMG/M
3300027903\|Ga0209488_10281824	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1243	Open in IMG/M
3300028047\|Ga0209526_10045304	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0088	3094	Open in IMG/M
3300028906\|Ga0308309_10696786	All Organisms → cellular organisms → Bacteria	883	Open in IMG/M
3300031231\|Ga0170824_113530098	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	808	Open in IMG/M
3300031231\|Ga0170824_121516300	Not Available	953	Open in IMG/M
3300031545\|Ga0318541_10667822	Not Available	581	Open in IMG/M
3300031763\|Ga0318537_10255488	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	650	Open in IMG/M
3300031771\|Ga0318546_10319868	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1076	Open in IMG/M
3300031896\|Ga0318551_10941054	Not Available	505	Open in IMG/M
3300031912\|Ga0306921_12711584	Not Available	509	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	98.31%
Host-Associated	Host-Associated	1.69%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	90.68%
Aquatic	Environmental → Aquatic	7.63%
Plants	Host-Associated → Plants	1.69%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	89.83%
Freshwater	Environmental → Aquatic → Freshwater	6.78%
Thermal Springs	Environmental → Aquatic → Thermal Springs	0.85%
Rock-Dwelling (Subaerial Biofilms)	Environmental → Terrestrial → Rock-Dwelling (Subaerial Biofilms)	0.85%
Rhizoplane	Host-Associated → Plants → Rhizoplane	0.85%
Roots	Host-Associated → Plants → Roots	0.85%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	68.64%
Loam	Environmental → Terrestrial → Soil → Loam	21.19%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	6.78%
Hot (42-90C)	Environmental → Aquatic → Thermal Springs → Hot (42-90C)	0.85%
Unclassified	Environmental → Terrestrial → Rock-Dwelling (Subaerial Biofilms) → Unclassified	0.85%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.85%
Unclassified	Host-Associated → Plants → Roots → Unclassified	0.85%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	29.66%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	18.64%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	16.10%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	15.25%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	6.78%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	5.93%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	3.39%
Acidic	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic	0.85%
Tropical Rainforest	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest	0.85%
Unclassified	Environmental → Terrestrial → Rock-Dwelling (Subaerial Biofilms) → Unclassified → Unclassified	0.85%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.85%
Unclassified	Host-Associated → Plants → Roots → Unclassified → Unclassified	0.85%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	25.42%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	12.71%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	10.17%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	9.32%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	8.47%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	6.78%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	4.24%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	3.39%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	3.39%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	3.39%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	2.54%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	2.54%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	1.69%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	1.69%
Iron-Sulfur Acid Spring	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring	0.85%
Exposed Rock	Environmental → Terrestrial → Rock-Dwelling (Subaerial Biofilms) → Unclassified → Unclassified → Exposed Rock	0.85%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.85%
Plant Roots	Host-Associated → Plants → Roots → Unclassified → Unclassified → Plant Roots	0.85%
Tropical Rainforest Soil	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest → Tropical Rainforest Soil	0.85%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300003219	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM3	Environmental	Open in IMG/M
3300003505	Forest soil microbial communities from Harvard Forest LTER, USA - Combined assembly of forest soil metaG samples (ASSEMBLY_DATE=20140924)	Environmental	Open in IMG/M
3300004080	Coassembly of ECP04_OM1, ECP04_OM2, ECP04_OM3	Environmental	Open in IMG/M
3300004091	Coassembly of ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300004152	Coassembly of ECP12_OM1, ECP12_OM2, ECP12_OM3	Environmental	Open in IMG/M
3300005167	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_121	Environmental	Open in IMG/M
3300005174	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_129	Environmental	Open in IMG/M
3300005177	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_139	Environmental	Open in IMG/M
3300005179	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_133	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005363	Tropical rainforest soil microbial communities from the Amazon Forest, Brazil, analyzing deforestation - Metatranscriptome F II A100 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300005434	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG	Environmental	Open in IMG/M
3300005435	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG	Environmental	Open in IMG/M
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental	Open in IMG/M
3300005437	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG	Environmental	Open in IMG/M
3300005559	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_149	Environmental	Open in IMG/M
3300005560	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_119	Environmental	Open in IMG/M
3300005569	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_154	Environmental	Open in IMG/M
3300005575	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_151	Environmental	Open in IMG/M
3300005602	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006176	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5	Environmental	Open in IMG/M
3300006804	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS200	Environmental	Open in IMG/M
3300006806	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100	Environmental	Open in IMG/M
3300006893	Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPA 5.5 metaG	Environmental	Open in IMG/M
3300006954	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300011120	Combined assembly of Microbial Forest Soil metaT	Environmental	Open in IMG/M
3300012198	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_20_16 metaG	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012582	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_20_16 metaG	Environmental	Open in IMG/M
3300012683	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz2.16 metaG	Environmental	Open in IMG/M
3300012917	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk2.16 metaG	Environmental	Open in IMG/M
3300012924	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300015242	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300016270	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080	Environmental	Open in IMG/M
3300016357	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000	Environmental	Open in IMG/M
3300018433	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116	Environmental	Open in IMG/M
3300018468	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111	Environmental	Open in IMG/M
3300020579	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M	Environmental	Open in IMG/M
3300020580	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M	Environmental	Open in IMG/M
3300020581	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M	Environmental	Open in IMG/M
3300020582	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-O	Environmental	Open in IMG/M
3300020583	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-M	Environmental	Open in IMG/M
3300021088	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-M	Environmental	Open in IMG/M
3300021170	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-M	Environmental	Open in IMG/M
3300021171	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-M	Environmental	Open in IMG/M
3300021178	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-M	Environmental	Open in IMG/M
3300021180	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-O	Environmental	Open in IMG/M
3300021181	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-O	Environmental	Open in IMG/M
3300021374	Barbacenia macrantha exposed rock microbial communities from rupestrian grasslands, the National Park of Serra do Cipo, Brazil - ER_R08	Environmental	Open in IMG/M
3300021377	Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R7	Host-Associated	Open in IMG/M
3300021403	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-O	Environmental	Open in IMG/M
3300021404	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-O	Environmental	Open in IMG/M
3300021406	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-O	Environmental	Open in IMG/M
3300021420	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M	Environmental	Open in IMG/M
3300021474	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-O	Environmental	Open in IMG/M
3300021479	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-M	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300022506	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-26-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022726	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-30-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300025906	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025916	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300026312	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_120 (SPAdes)	Environmental	Open in IMG/M
3300026527	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_151 (SPAdes)	Environmental	Open in IMG/M
3300026530	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_154 (SPAdes)	Environmental	Open in IMG/M
3300026538	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114 (SPAdes)	Environmental	Open in IMG/M
3300026551	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm (SPAdes)	Environmental	Open in IMG/M
3300026555	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300026984	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF048 (SPAdes)	Environmental	Open in IMG/M
3300027070	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF004 (SPAdes)	Environmental	Open in IMG/M
3300027109	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF008 (SPAdes)	Environmental	Open in IMG/M
3300027521	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM1H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300027583	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M2 (SPAdes)	Environmental	Open in IMG/M
3300027635	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_M2 (SPAdes)	Environmental	Open in IMG/M
3300027737	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP03_OM3 (SPAdes)	Environmental	Open in IMG/M
3300027884	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2 (SPAdes)	Environmental	Open in IMG/M
3300027903	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2 (SPAdes)	Environmental	Open in IMG/M
3300028047	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300028906	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5 (v2)	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031545	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f26	Environmental	Open in IMG/M
3300031763	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f29	Environmental	Open in IMG/M
3300031771	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f19	Environmental	Open in IMG/M
3300031896	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f19	Environmental	Open in IMG/M
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI26341J46601_101754151	3300003219	Bog Forest Soil	MLERHALAIIGGALVLMALSLVRPSSGMRMIVLGLLLAAAALVGMALGFRNLLSALSVTG
JGIcombinedJ51221_100280632	3300003505	Forest Soil	MLEWHELAIIGGALVLMALAVIRPSSGMRMIMFGLLLAAVALVGMGLGVRSLLSALTGLS
JGIcombinedJ51221_100384112	3300003505	Forest Soil	MLEWHALAIIGGALVLIAVALIRPSSGMRTIVLGLLLAAAALAGMGLGVRNLLSALTGMS
JGIcombinedJ51221_102419992	3300003505	Forest Soil	MFERHAIAIIGGALVLMALALIRPSSGMRMIALGLLLAAAAVVGMGLGLRNLLNALVG*
Ga0062385_103499771	3300004080	Bog Forest Soil	MLEWHALEIIGGALVLMALAVIRPSSGMRVIVLGLLLAAAALVGMGLGVRTLLSAMTGMS
Ga0062385_103803111	3300004080	Bog Forest Soil	MLERHALAIAAVALALMALALIRPSSGMRMIVLGLLLAAAAVVGMGLGVRQLFEVVSWTG
Ga0062385_112491331	3300004080	Bog Forest Soil	MLERHALEIIGGALVLMALAVIRPSSGMRMIVLGLLLAAAALVGMGLGLQSLLSALS*
Ga0062387_1017280531	3300004091	Bog Forest Soil	MLERHALEIIGGATVLMALAVIRPSSGMRTIVLGLLLAAAALAGMGLGLRSLLSALG*
Ga0062386_1001156493	3300004152	Bog Forest Soil	MPDHQALAIVSCGLVLMALTLVRPSSGMRMVVFGVLLAAVALLVMNLGFKSLLTGMSGPG
Ga0062386_1004521713	3300004152	Bog Forest Soil	RMLERHALAIIGGALVLMALSVVRPSSGMRMIVLGLLLAAAALVGMNLGLRNLLNAVGG*
Ga0066672_105340681	3300005167	Soil	MPEVVAGMLERHALAIIGGALVLMALTLVRPSSGMRIMVLGLLLAAAALVGMSLGLRHFLNAAIGAG*
Ga0066672_108449401	3300005167	Soil	MFERHSLAIACVALLLMALALIRPSSGTRMIVLGLLLAAAALVGMGLGFRNLLSALP*
Ga0066680_108414521	3300005174	Soil	MLERHALAIIGGALVLMALSLVRPSSGMRMIMLGLLLAAAVLVGMSLGLRNLLNALAG*
Ga0066690_102752562	3300005177	Soil	MLEWHTLAIVGGAVVLMALAVIRPSSGMRMIVFGLLLAAAALAGMGLGVRSLLSALTGIS
Ga0066684_101942402	3300005179	Soil	MLERDELAIIAGALVLMATALIRPSSGMRSIVLGLLLAAAALFGTGLGVRNLLSALTGMS
Ga0066684_102525222	3300005179	Soil	VSEVLTRMLEWHTLAIVGGAVVLMALAVIRPSSGMRMIVFGLLLAAAALAGMGLGVRSLLSALTGIS*
Ga0066388_1024204572	3300005332	Tropical Forest Soil	MLERHALAIVGGALVLMALSLVRPSSGMRAIVLGLVLAAAALVGMSLGLRNFVSALTGIG
Ga0066388_1034489301	3300005332	Tropical Forest Soil	MLERHALAIVGGALVLMALALVRPSSGMRMIVLGLLLAAAALVGMSLGLRNFVGALTGIG
Ga0008090_152988213	3300005363	Tropical Rainforest Soil	MLERHALAIVGGALVLMALALVRPSSGMRMIVLGLLLAAAALVGMSLGLRNFVSALTGIG
Ga0070709_103012941	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	MFERHSLAITCVALVLMALALIRPSTGTRMIVLGLLLAAAALVGMGLGFRNLLSALT*
Ga0070714_1005573501	3300005435	Agricultural Soil	MLEWHELAIIGGALVLMALAVIRPSSGMRMIALGLLLAAAAVVGMGLGLRNLLSALTGMS
Ga0070714_1009011761	3300005435	Agricultural Soil	MFERHSLAITCVALVLMALALIRPSSGTRMIVLGLLLAAAALVGMGLGFRNLLSALT*
Ga0070713_1000925232	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	MFERHSLAITCVALALIALALIRPSSGTRMIVLGLLLAAAALVGMGLGFRNLLSALT*
Ga0070710_111729731	3300005437	Corn, Switchgrass And Miscanthus Rhizosphere	MFERHSLAITCVALVLMALALIRPSTGTRMIALGLLLAAAALVGMGLGFRNLLSALT*
Ga0066700_108356811	3300005559	Soil	MPEVVAGMLERHALAIIGGALVLMALTLVRPSSGMRIMVLGLLLAAAALVGMSLGLRHFLNAAI
Ga0066670_103676631	3300005560	Soil	MIAEVLAGILERHALAINCIALVLMALALIRPSSGLRMIVLGLLLAAAALVGMGLGFRNLLSELT*
Ga0066705_104303342	3300005569	Soil	MPEVVAGMLERHALAIIGGALVLMALTLVRPSSGMRIMVLGLLLAAAALVGMSLGLRHFL
Ga0066702_100701402	3300005575	Soil	MPEVVAGMLERHALAIIGGALVLMALTLVRPSSGMRIMVLGLLLAAAALVGMSLGLWHFLNAAIGAG*
Ga0070762_102703682	3300005602	Soil	MFERHAIAIIGGALVLIVLALIRPSSGMRMIALGLLLAAAAVVGMGLGLRNLLSALTGMS
Ga0066903_1028592973	3300005764	Tropical Forest Soil	MLERHALAIVGGALVLMALALVRPSSGMRMIVLGLLLAAAALVGMSLGLRNFVG
Ga0070765_1005114562	3300006176	Soil	MLERHALEIIGGALVLMALALIRPSSGIRMIVLGLLLAAAALIGMGLGLQRLFGALS*
Ga0079221_105916031	3300006804	Agricultural Soil	MMPEVLTRMLERYALAITCSALVLMSLALIRPSSGMRMIVLGLLLAAAALVGMGLGFRNLLSALT*
Ga0079220_108799972	3300006806	Agricultural Soil	MLERHALAIIGGALVLMALTLVRPSSGMRIMVLGLLLAAAALAGMSLGLRHFLNAAIGAG
Ga0073928_101548762	3300006893	Iron-Sulfur Acid Spring	MPEVLTGMLERHALAIACIALALTALALIRPSSGMRMVVLGLLLAAAALVGMGLGFRNLLSGLT*
Ga0079219_112588302	3300006954	Agricultural Soil	MPEVVAGMLERHALAIIGGALVLMALTLVRPSSGMRIMVLGLLLAAAALAGMSLGLRHFLNAAIGA
Ga0079219_119873252	3300006954	Agricultural Soil	MLERHALAINCIALVLMALALIRPSSGMRMIVLGLLLAAAALVGMGLGFRNLLSELT*
Ga0126376_131170491	3300010359	Tropical Forest Soil	MLERHALAIVGGALVLMALALVRPSSGMRIIVLGLLLAAAALVGMSLGLRNFVSALTGIG
Ga0126372_114387631	3300010360	Tropical Forest Soil	MLERHALAIVGGALVLMALSLVRPSSGMRAIVLGLVLAAAALVGMSLG
Ga0126372_119164151	3300010360	Tropical Forest Soil	VRENARTAIVGGALVLMALALVRPSSGMRMIVLGLLLAAAALVGMSLGLRNFVSA
Ga0126378_102439852	3300010361	Tropical Forest Soil	VLEGHALAIVGGALVLMALALVRPSSGMRMIVLGLLLAAAALVGMSLGLRNFVGALTGIG
Ga0126378_102609892	3300010361	Tropical Forest Soil	MPERHALAIVSVALVLMALALVRPSSGMRMIVLGLLLAAAALIGMTLGLRHFLYAAIGIG
Ga0126381_1003589964	3300010376	Tropical Forest Soil	MMLEHDGVAIVSVALVLMALAVVRPSNGMRIIVLMLLLAAAVLVGASLGFKDLMNTFG*
Ga0126381_1005645842	3300010376	Tropical Forest Soil	MLERHALAIVGGALVLMALALVRPSSGMRIIVLGLLLAAAALVGMRLGLRNFVSALTGIG
Ga0126381_1011851292	3300010376	Tropical Forest Soil	RHALAIVGGALVLMALALVRPSSGMRMIVLGLLLAAAALVGMSLGLRNFVSALTGIG*
Ga0150983_112553261	3300011120	Forest Soil	RMLERHALAITCVALVLMVLALIRPSSGMRMIVLGLLLAAAALVGMSLGFQNLLSALT*
Ga0137364_102160742	3300012198	Vadose Zone Soil	VPEVLAGMLERHALAIIGGALVLMALTLVRPSSGLRMIVLGLLLAAAALVGLSLGVRDFVDAITGMG*
Ga0137363_115473351	3300012202	Vadose Zone Soil	MLERHALAIIGGALVLMALSLVRPSSGMRMIMLGLLLAAAVLVGMSLGLRNLLNALAG
Ga0137358_109375791	3300012582	Vadose Zone Soil	MLERHSLAITCVALVLMALALIRPSSGTRMIVLGLLLAAAALVGMGLGFRNLLSALP*
Ga0137398_108530851	3300012683	Vadose Zone Soil	MLERHAIAIIGGALVMMVRALIRPSSGMRMIVLGLLLAAAAVVGMGLGFRNLLSALT*
Ga0137395_111855862	3300012917	Vadose Zone Soil	MLERHAIAIIGGALVLMVLALIRPSSGMRMIALGLLLAAAAVVGMGLGLRNLLSALTGMS
Ga0137413_115650191	3300012924	Vadose Zone Soil	MFERHAIAIIGGALVLMVLALIRPSSGMRMIVLGLLLAAAAVVGMGLGLRDLLRALT*
Ga0126369_109239701	3300012971	Tropical Forest Soil	MLERHALAIVGGALVLMALVLVRPSSGMRMIVLGLLLAAAALVGMSLGLRNFVGAL
Ga0137412_108454402	3300015242	Vadose Zone Soil	MLERQAIAIIGGALVLMVLALIRPSSGMRMIVLGLLLAAAAVVGMGLGLRDLLRALT*
Ga0132258_102313472	3300015371	Arabidopsis Rhizosphere	MPEVVAGMLERHALAIIGGALVLMALTLVRPSSGMRIMVLGLLLAAAALAGMSLGLRHFLNAAIGAG*
Ga0182036_100982212	3300016270	Soil	MLERHALAIVGGALVLMALALVRPSSGTRMIVLGLLLAAAALVGMSLGLRNFVGALTGIG
Ga0182032_104165282	3300016357	Soil	VPEVLKRMLEWHRLAIIGGALVLLAVAVIRPSSGMRMIVFGLLLAAAALFGMSLGVRSLLSALTG
Ga0066667_102489981	3300018433	Grasslands Soil	MLEWHTLAIVGGAVVLMALAVIRPSSGMRMIVFGLLLAAAALAGMGLGVRSLLNALTGIS
Ga0066662_109252122	3300018468	Grasslands Soil	MLEWHTLAIIGGAVVLMALAVIRPSSGMRMIVFGLLLAAAALAGMGLGVRSLLSALTGIS
Ga0066662_118298191	3300018468	Grasslands Soil	GRVSEVLTRMLEWHTLAIIGGALVLMALAVIRPSSGMRMIVFGLLLAAVALAGMGLGVSSLLSALTGMS
Ga0210407_100349835	3300020579	Soil	MFERHAIAIIGGALVLIALALIRPSSGMRMIALGLLLAAAAVVGMGLGLRNLLS
Ga0210403_100091085	3300020580	Soil	MLEWHELAIIGGALVLMALAMIRPSSGMRTIMFGLLLAAVALVGMGLGVRSLLSALTGLS
Ga0210403_109973361	3300020580	Soil	MFERHAIAIIGGALVLMALALIRPSSGMRMIALGLLLAAAAVVGMGLGLRNLLNALVG
Ga0210403_110881591	3300020580	Soil	LSSVPYGGRPEVLARMFERHAIAIIGGALVLIALALIRPSSGMRMIALGLLLAAAAVVGMGLGLRNLLSALTGMS
Ga0210399_100603231	3300020581	Soil	MLEWHALAIIGGALVLIAVALIRPSSGMRTIVLGLLLAAAALAGMGLGVRNLLRALTGMS
Ga0210395_110204361	3300020582	Soil	MLERHALAITCVALVLMVLALIRPSSGMRMIVLGLLLAAAALVGMSLGFQNLLSALT
Ga0210401_100280597	3300020583	Soil	MLEWHELAIIGGALVLMALAVLRPSSGMRMIMFGLLLAAVALVGMGLGVRSLLSALTGLS
Ga0210401_101444971	3300020583	Soil	MLERHALEIIGGALVLMALALIRPSSGIRMIVLGLLLTAAALIGMGLGLQRLFGAL
Ga0210404_101194891	3300021088	Soil	MFERHAIAIIGGALVLIALALIRPSSGMRMIALGLLLAAAAVVGMGLGLRNLLNALVG
Ga0210400_114822902	3300021170	Soil	MFERHAIAIIGGALVLIALALIRPSSGMRMIALGLLLAAAAVVGMGLGLRNLL
Ga0210400_116286711	3300021170	Soil	MFERHAIAIIGGVLVLIALALIRPSSGMRMIALGLLLAAAAVVGMGLGLRNLLSALTGMS
Ga0210405_108340592	3300021171	Soil	GALVLIALALIRPSSGMRMIALGLLLAAAAVVGMGLGLRNLLSALTGMS
Ga0210408_104116502	3300021178	Soil	MLERHALEIIGGALVLMALALIRPSSGIRMIVLGLLLAAAALIGMGLGLQRLFGALS
Ga0210408_106983601	3300021178	Soil	MLEWHELAIIGGALVLMAPAVIRPSSGMRMIMFGLLLAAVALVSMGLGVRSLLSALTGLS
Ga0210408_112666491	3300021178	Soil	MLEWHALAIIGGALVLIAVALIRPSSGMRMIVLGLLLAAAALAGMGLGVRNLLSALTGMS
Ga0210396_112842712	3300021180	Soil	MFERHAIAIIGGALVLMALALIRPSSGMRMIALGLLLAAAAVVGMGLGLRNLLSALTGMS
Ga0210388_105063362	3300021181	Soil	PEVLTRMLEWHALAIIGGALVLIAVALIRPSSGMRTIVLGLLLAAAALAGMGLGVRNLLRALTGMS
Ga0213881_100568561	3300021374	Exposed Rock	MLEQHALAIIGGALVLMALTLVRPSSGLRMIVLGLLLAAAALLGMSLGLRDFVGALTGQG
Ga0213874_104546161	3300021377	Plant Roots	MLDRHALAIVGGALVLMALTLVRPSSGMRMIVLGLLLAAAALVGMSLGLRDFVSALTGRG
Ga0210397_103427081	3300021403	Soil	MLERHALAIVGGALVLMALSLVRPSSGMHAIVLGLLLAVAALVGMSLGLRNFV
Ga0210389_100696574	3300021404	Soil	MPEVLARMLERHALAITCVALVLMVLALIRPSSGMRMIVLGLLLAAAALVGMSLGFQNLLSALT
Ga0210389_109822092	3300021404	Soil	VLTRMLEWHALAIIGGALVLIAVALIRPSSGMRTIVLGLLLAAAALAGMGLGVRNLLRALTGMS
Ga0210386_102723003	3300021406	Soil	VLTRMLEWHALAIIGGALVLIAVALIRPSSGMRTIVLGLLLAAAALAGMGLGVRNLLSALTGMS
Ga0210394_103611032	3300021420	Soil	MLEWHALAIIGGALVLIAVALIRPSSGMRMIALGLLLAAAAVVGMGLG
Ga0210390_113599301	3300021474	Soil	VLARMLERHALEIIGGALVLMALALIRPSSGIRMIVLGLLLAAAALIGMGLGLQRLFGAL
Ga0210410_102989842	3300021479	Soil	MLERHALAIVGGALVLMALSLVRPASGMRAIVLGLLLAVAALVGMSLGLRNFVSALTGIG
Ga0126371_100165555	3300021560	Tropical Forest Soil	MPERHALAIVSVALVLMALALVRPSSGMRMIVLGLLLAAAALIGMTLGLRHFLDAAIGIG
Ga0126371_103232212	3300021560	Tropical Forest Soil	MLERHALALIGGALVLMALTLVRPSSGMRMIMLGLLLAAAALVGMSLGLRNFVSALTGIG
Ga0126371_103631713	3300021560	Tropical Forest Soil	VRENARTAIVGGALVLMALALVRPSSGMRMIVLGLLLAAAALVGMSLGLRNFVSALTGIG
Ga0242648_10544591	3300022506	Soil	HELAIIGGALVLMALAVIRPSSGMRMIMFGLLLAAVALVGMGLGVRSLLSALTGLS
Ga0242654_102548251	3300022726	Soil	MFERHAIAIIGGALVLMALALIRPSSGMRMIALGLLLAAAALAGMGLGVRNLL
Ga0207699_101425322	3300025906	Corn, Switchgrass And Miscanthus Rhizosphere	MFERHSLAITCVALVLMALALIRPSTGTRMIVLGLLLAAAALVGMGLGFRNLLSALT
Ga0207663_105157532	3300025916	Corn, Switchgrass And Miscanthus Rhizosphere	ERHSLAITCVALALIALALIRPSSGTRMIVLGLLLAAAALVGMGLGFRNLLSALT
Ga0209153_11419471	3300026312	Soil	MPEVVAGMLERHALAIIGGALVLMALTLVRPSSGMRIMVLGLLLAAAALVGMSLGLRHFLNAAIGAG
Ga0209153_11666171	3300026312	Soil	MLEWHTLAIVGGAVVLMALAVIRPSSGMRMIAFGLLLAAAALAGMGLGVRSLLSALTGIS
Ga0209059_11802652	3300026527	Soil	MPEVVAGMLERHALAIIGGALVLMALTLVRPSSGMRMIVFGLLLAAAALAGMGVGVRSLLSALTGIS
Ga0209807_12934811	3300026530	Soil	VLTRMLEWHTLAIIGGAVVLMALAVIRPSSGMRMIVFGLLLAAAALAGMGLGVRSLLSALTGIS
Ga0209056_106451162	3300026538	Soil	MLERHALAIIGGALVLMALSLVRPSSGMRMIMLGLLLAAAVLVGMSLGLRNLLNA
Ga0209648_100137335	3300026551	Grasslands Soil	MLERHALAITCIALVLMALALIRPSSGMRMIVLGLLLAAAALVGMGLGFRNLLSVLT
Ga0179593_11266462	3300026555	Vadose Zone Soil	MLERHAIAIIGGALVLMVLALIRPSSGMRMIVLGLLLAAAAVVGMGLGLRDLLRALT
Ga0208732_10003451	3300026984	Forest Soil	MFERHAIAIIGGALVLMALAVIRPSSGMRMIMFGLLLAAVALVGMGLGVRSLLSALTGLS
Ga0208365_10056281	3300027070	Forest Soil	MLEWHALAIIGGALVLMALAVLRPSSGMRMIMLGLLLAAVALVGMGLGVRSLLSA
Ga0208603_10154852	3300027109	Forest Soil	MFERHAIAIIGGALVLMALALIRPSSGMRTIVLGLLLAAAALAGMGLGVRNLLSALTGMS
Ga0209524_10529601	3300027521	Forest Soil	MLEWHALVIIGGALVLIAVALIRPSSGMRTIVLGLLLAAAALAGMGLG
Ga0209527_10150662	3300027583	Forest Soil	MFERHAIAIIGGALVLMALALIRPSSGMRMIALGLLLAAAAMVGMGLGLRNLLDALVG
Ga0209625_10743121	3300027635	Forest Soil	GGALVLIALALIRPSSGMRMIALGLLLAAAAVVGMGLGLRNLLSALTGMS
Ga0209038_100319931	3300027737	Bog Forest Soil	MLERHALAIAAVALALMALALIRPSSGMRMIVLGLLLAAAALVGMGLGLQSLLS
Ga0209275_101474572	3300027884	Soil	MFERHAIAIIGGALVLMALALIRPSSGMRMIVLGLLLAAAAVVGMGLGLRNLLSALTGMS
Ga0209488_101208103	3300027903	Vadose Zone Soil	MFERHAIAIIGGALMLMALALIRPSSGMRMIALGLLLAAAAVVGMGLGLRNLLSALTGMS
Ga0209488_102818242	3300027903	Vadose Zone Soil	MFERHSLAITCVALVLMALALIRPSSGTRMIVLGLLLAAAAVVGMGLGFRNLLSALP
Ga0209526_100453045	3300028047	Forest Soil	MLEWHALVIIGGALVLIAVALIRPSSGMRTIVLGLLLAAAALAGMGLGVRNLLSALTGMS
Ga0308309_106967862	3300028906	Soil	MLERHALEIIGGALVLMALALIRPSSGIRMIVLGLLLAAAALIGMGLGLQRLFGAL
Ga0170824_1135300981	3300031231	Forest Soil	PRINLGAAGCVPEVLKRMLEWHKPAIIGGALVLMAVAVIRPSSGMRMIVFGLLLAAAALFGMSLGVRSLLSALTG
Ga0170824_1215163002	3300031231	Forest Soil	MLERHALAIIGGGLVLMALSLVRPSSGMRMIVLGLLLAAAALVGINLGLRNLLNSLAG
Ga0318541_106678221	3300031545	Soil	MLEWHRLAIIGGALVLLAVAVIRPSSGMRMIVFGLLLAAAALFGMSLGVRSLLSALTG
Ga0318537_102554881	3300031763	Soil	EVLKRMLEWHRLAIIGGALVLLAVAVIRPSSGMRMIVFGLLLAAAALFGMSLGVRSLLSALTG
Ga0318546_103198682	3300031771	Soil	MLEWHELAIIGGALVLMGLAVIRPSSGMRMIMFGLLLAAVALVGMGLGVRSLLSALTGMS
Ga0318551_109410541	3300031896	Soil	VLKRMLEWHRLAIIGGALVLLAVAVIRPSSGMRMIVFGLLLAAAALFGMSLGVRSLLSALTG
Ga0306921_127115841	3300031912	Soil	MLEWHELAIIGGALVLMGLAVIRPSSGMRMIMFGLLLAAVALVGMGLGV

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F076304

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences