NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Metagenome / Metatranscriptome Family F075952

Metagenome / Metatranscriptome Family F075952

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
Select file to download:
   Download


Overview

Basic Information
Family ID F075952
Family Type Metagenome / Metatranscriptome
Number of Sequences 118
Average Sequence Length 89 residues
Representative Sequence MVEIRVKVDDATRVHGLMRRLAALFGRSAISFDGSRNEVRVESEWESRGVVHVIDAVEAWIEEDGGTWAKLSIGRNSYLLPPPIAMGG
Number of Associated Samples 97
Number of Associated Scaffolds 118

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 82.20 %
% of genes near scaffold ends (potentially truncated) 23.73 %
% of genes from short scaffolds (< 2000 bps) 78.81 %
Associated GOLD sequencing projects 88
AlphaFold2 3D model prediction Yes
3D model pTM-score0.73

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
Powered by Skylign

Most Common Taxonomy
Group Bacteria (61.864 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil
(22.881 % of family members)
Environment Ontology (ENVO) Unclassified
(33.051 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
(55.085 % of family members)


 ⦗Top⦘

Multiple Sequence Alignments

Select alignment to view:      

 ⦗Top⦘

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 31.90%    β-sheet: 23.28%    Coil/Unstructured: 44.83%
Feature Viewer
Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  		pTM-score: 0.73
Powered by PDBe Molstar

Structural matches with SCOPe domains

SCOP familySCOP domainRepresentative PDBTM-score
e.51.1.1: Urocanased1uwka_1uwk0.75
d.58.29.1: Nucleotide cyclased1wc1a_1wc10.72
d.153.1.1: N-terminal nucleophile aminohydrolases (Ntn hydrolases)d1ofda31ofd0.71
e.8.1.7: DNA/RNA polymerasesd1t94a21t940.7
d.58.29.0: Nucleotide cyclased2w01a_2w010.7

 ⦗Top⦘

Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 118 Family Scaffolds
PF03861ANTAR 13.56
PF13492GAF_3 7.63
PF06224HTH_42 6.78
PF02518HATPase_c 5.93
PF00196GerE 3.39
PF00072Response_reg 2.54
PF13280WYL 2.54
PF13185GAF_2 2.54
PF00313CSD 1.69
PF00512HisKA 1.69
PF12773DZR 0.85
PF02824TGS 0.85
PF11414Suppressor_APC 0.85
PF04185Phosphoesterase 0.85
PF09948DUF2182 0.85
PF13561adh_short_C2 0.85
PF00149Metallophos 0.85
PF13489Methyltransf_23 0.85
PF01883FeS_assembly_P 0.85
PF08448PAS_4 0.85

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 118 Family Scaffolds
COG3707Two-component response regulator, AmiR/NasT family, consists of REC and RNA-binding antiterminator (ANTAR) domainsTranscription [K] 13.56
COG3214DNA glycosylase YcaQ, repair of DNA interstrand crosslinksReplication, recombination and repair [L] 6.78
COG3511Phospholipase CCell wall/membrane/envelope biogenesis [M] 0.85

 ⦗Top⦘

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
All OrganismsrootAll Organisms61.86 %
UnclassifiedrootN/A38.14 %

Visualization
Powered by ApexCharts

Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
2170459015|G14TP7Y01EHAELNot Available657Open in IMG/M
3300000364|INPhiseqgaiiFebDRAFT_100264417Not Available667Open in IMG/M
3300000956|JGI10216J12902_103727507Not Available892Open in IMG/M
3300000956|JGI10216J12902_107814961Not Available1051Open in IMG/M
3300000956|JGI10216J12902_108763824Not Available1776Open in IMG/M
3300004480|Ga0062592_101728145Not Available609Open in IMG/M
3300005093|Ga0062594_100286772All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium1239Open in IMG/M
3300005172|Ga0066683_10097945All Organisms → cellular organisms → Bacteria1777Open in IMG/M
3300005172|Ga0066683_10273428Not Available1049Open in IMG/M
3300005178|Ga0066688_10084999All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium1906Open in IMG/M
3300005179|Ga0066684_10557262All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium769Open in IMG/M
3300005181|Ga0066678_10584596Not Available742Open in IMG/M
3300005186|Ga0066676_10992121All Organisms → cellular organisms → Bacteria → Terrabacteria group559Open in IMG/M
3300005187|Ga0066675_10087294All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium2028Open in IMG/M
3300005440|Ga0070705_100006857All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia5598Open in IMG/M
3300005445|Ga0070708_100063442All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium3307Open in IMG/M
3300005467|Ga0070706_100413509All Organisms → cellular organisms → Bacteria1256Open in IMG/M
3300005468|Ga0070707_100596445All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium1067Open in IMG/M
3300005540|Ga0066697_10058649All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium2194Open in IMG/M
3300005545|Ga0070695_101521606Not Available557Open in IMG/M
3300005549|Ga0070704_101774926Not Available571Open in IMG/M
3300005549|Ga0070704_101819525Not Available564Open in IMG/M
3300005553|Ga0066695_10565291Not Available688Open in IMG/M
3300005558|Ga0066698_10184987All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium1421Open in IMG/M
3300005558|Ga0066698_11047275Not Available517Open in IMG/M
3300005560|Ga0066670_10597153All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia672Open in IMG/M
3300005569|Ga0066705_10471666All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium787Open in IMG/M
3300005614|Ga0068856_100812333Not Available955Open in IMG/M
3300006032|Ga0066696_10112201All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium1656Open in IMG/M
3300006032|Ga0066696_10383177All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium917Open in IMG/M
3300006046|Ga0066652_100102747All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria2309Open in IMG/M
3300006755|Ga0079222_11357946Not Available654Open in IMG/M
3300006791|Ga0066653_10035734All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1991Open in IMG/M
3300006796|Ga0066665_11005774Not Available639Open in IMG/M
3300006800|Ga0066660_10073370All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria2329Open in IMG/M
3300006845|Ga0075421_100334161All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium1834Open in IMG/M
3300006854|Ga0075425_100013796All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales8707Open in IMG/M
3300006854|Ga0075425_100191144All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium2352Open in IMG/M
3300006854|Ga0075425_102113180All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium628Open in IMG/M
3300006871|Ga0075434_101850096Not Available610Open in IMG/M
3300006914|Ga0075436_101248899Not Available561Open in IMG/M
3300006954|Ga0079219_12068651Not Available544Open in IMG/M
3300009012|Ga0066710_102641784All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium720Open in IMG/M
3300009137|Ga0066709_100651646All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium1508Open in IMG/M
3300009162|Ga0075423_11175813Not Available818Open in IMG/M
3300009840|Ga0126313_10362736All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium1144Open in IMG/M
3300010128|Ga0127486_1030581Not Available514Open in IMG/M
3300010321|Ga0134067_10067375All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium1179Open in IMG/M
3300010333|Ga0134080_10254063Not Available776Open in IMG/M
3300010335|Ga0134063_10713073All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium519Open in IMG/M
3300010373|Ga0134128_11509569Not Available740Open in IMG/M
3300011000|Ga0138513_100005083All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium1463Open in IMG/M
3300011003|Ga0138514_100002932All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales2311Open in IMG/M
3300012198|Ga0137364_10365966All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium1076Open in IMG/M
3300012198|Ga0137364_10543399Not Available874Open in IMG/M
3300012201|Ga0137365_10051153All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria3127Open in IMG/M
3300012201|Ga0137365_11162738Not Available553Open in IMG/M
3300012204|Ga0137374_10212572All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium1654Open in IMG/M
3300012206|Ga0137380_10957317All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium733Open in IMG/M
3300012208|Ga0137376_10367854All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium1249Open in IMG/M
3300012354|Ga0137366_10023879All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria4757Open in IMG/M
3300012355|Ga0137369_10317906All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium1149Open in IMG/M
3300012356|Ga0137371_10411700All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi1048Open in IMG/M
3300012360|Ga0137375_10935692All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium686Open in IMG/M
3300012380|Ga0134047_1225317Not Available572Open in IMG/M
3300012410|Ga0134060_1041545Not Available500Open in IMG/M
3300012915|Ga0157302_10080650All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium987Open in IMG/M
3300012989|Ga0164305_10685758All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium835Open in IMG/M
3300014150|Ga0134081_10310281All Organisms → cellular organisms → Bacteria → Terrabacteria group569Open in IMG/M
3300014325|Ga0163163_10596802All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium1167Open in IMG/M
3300014497|Ga0182008_10589198Not Available623Open in IMG/M
3300014497|Ga0182008_10717327Not Available573Open in IMG/M
3300014969|Ga0157376_11300752All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium757Open in IMG/M
3300015357|Ga0134072_10410583Not Available536Open in IMG/M
3300015358|Ga0134089_10512941Not Available527Open in IMG/M
3300015372|Ga0132256_100062252All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium3507Open in IMG/M
3300015374|Ga0132255_100295606All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium2329Open in IMG/M
3300018027|Ga0184605_10000533All Organisms → cellular organisms → Bacteria11316Open in IMG/M
3300018027|Ga0184605_10007879All Organisms → cellular organisms → Bacteria3971Open in IMG/M
3300018027|Ga0184605_10017237All Organisms → cellular organisms → Bacteria2853Open in IMG/M
3300018027|Ga0184605_10343375All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium674Open in IMG/M
3300018061|Ga0184619_10001669All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria7891Open in IMG/M
3300018433|Ga0066667_10014870All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria3918Open in IMG/M
3300018433|Ga0066667_10231757Not Available1384Open in IMG/M
3300018465|Ga0190269_10336916Not Available900Open in IMG/M
3300018482|Ga0066669_10571401All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium988Open in IMG/M
3300018482|Ga0066669_10771185Not Available850Open in IMG/M
3300019279|Ga0184642_1148195Not Available527Open in IMG/M
3300019279|Ga0184642_1415385All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium799Open in IMG/M
3300019279|Ga0184642_1559218All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium801Open in IMG/M
3300019875|Ga0193701_1025928All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium1202Open in IMG/M
3300019878|Ga0193715_1071331All Organisms → cellular organisms → Bacteria → Terrabacteria group729Open in IMG/M
3300019890|Ga0193728_1092750Not Available1406Open in IMG/M
3300025910|Ga0207684_10214827All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium1659Open in IMG/M
3300025910|Ga0207684_11529361Not Available542Open in IMG/M
3300025922|Ga0207646_10392292All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium1254Open in IMG/M
3300025944|Ga0207661_10011166All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria6497Open in IMG/M
3300026078|Ga0207702_10050450All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium3514Open in IMG/M
3300026536|Ga0209058_1146847All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium1117Open in IMG/M
3300026547|Ga0209156_10098470All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium1458Open in IMG/M
3300026550|Ga0209474_10634602Not Available549Open in IMG/M
3300026552|Ga0209577_10270217All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1277Open in IMG/M
3300027787|Ga0209074_10200934Not Available749Open in IMG/M
3300027909|Ga0209382_10969380Not Available889Open in IMG/M
3300028715|Ga0307313_10015630All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium2005Open in IMG/M
3300028718|Ga0307307_10000373All Organisms → cellular organisms → Bacteria10213Open in IMG/M
3300028784|Ga0307282_10546695Not Available562Open in IMG/M
3300028791|Ga0307290_10036921All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium1746Open in IMG/M
3300028807|Ga0307305_10004900All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales5671Open in IMG/M
3300028807|Ga0307305_10283402All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium755Open in IMG/M
3300028811|Ga0307292_10199261Not Available822Open in IMG/M
3300028814|Ga0307302_10004736All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria6033Open in IMG/M
3300028814|Ga0307302_10369296Not Available708Open in IMG/M
3300028828|Ga0307312_10957645All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium567Open in IMG/M
3300028881|Ga0307277_10000080All Organisms → cellular organisms → Bacteria28830Open in IMG/M
3300028884|Ga0307308_10345387Not Available713Open in IMG/M
3300028885|Ga0307304_10183800All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium887Open in IMG/M
3300031720|Ga0307469_12062716Not Available554Open in IMG/M


 ⦗Top⦘

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Soil22.88%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil16.10%
Vadose Zone SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil9.32%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere8.47%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil7.63%
Populus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere6.78%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil5.08%
Groundwater SedimentEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment4.24%
Groundwater SedimentEnvironmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment2.54%
Agricultural SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil2.54%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil1.69%
SoilEnvironmental → Terrestrial → Agricultural Field → Unclassified → Unclassified → Soil1.69%
Corn RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere1.69%
RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere1.69%
Terrestrial SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil0.85%
Serpentine SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil0.85%
Hardwood Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil0.85%
Corn RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere0.85%
Arabidopsis RhizosphereHost-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere0.85%
Switchgrass RhizosphereHost-Associated → Plants → Roots → Rhizosphere → Soil → Switchgrass Rhizosphere0.85%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere0.85%
Arabidopsis RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere0.85%
Switchgrass, Maize And Mischanthus LitterEngineered → Solid Waste → Grass → Composting → Unclassified → Switchgrass, Maize And Mischanthus Litter0.85%

Visualization
Powered by ApexCharts



Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
2170459015Litter degradation PV4EngineeredOpen in IMG/M
3300000364Soil microbial communities from Great Prairies - Iowa, Native Prairie soilEnvironmentalOpen in IMG/M
3300000956Soil microbial communities from Great Prairies - Kansas, Native Prairie soilEnvironmentalOpen in IMG/M
3300004480Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 4EnvironmentalOpen in IMG/M
3300005093Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All BlocksEnvironmentalOpen in IMG/M
3300005172Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_132EnvironmentalOpen in IMG/M
3300005178Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_137EnvironmentalOpen in IMG/M
3300005179Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_133EnvironmentalOpen in IMG/M
3300005181Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_127EnvironmentalOpen in IMG/M
3300005186Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_125EnvironmentalOpen in IMG/M
3300005187Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_124EnvironmentalOpen in IMG/M
3300005440Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaGEnvironmentalOpen in IMG/M
3300005445Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaGEnvironmentalOpen in IMG/M
3300005467Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaGEnvironmentalOpen in IMG/M
3300005468Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaGEnvironmentalOpen in IMG/M
3300005540Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_146EnvironmentalOpen in IMG/M
3300005545Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaGEnvironmentalOpen in IMG/M
3300005549Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaGEnvironmentalOpen in IMG/M
3300005553Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_144EnvironmentalOpen in IMG/M
3300005558Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_147EnvironmentalOpen in IMG/M
3300005560Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_119EnvironmentalOpen in IMG/M
3300005569Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_154EnvironmentalOpen in IMG/M
3300005614Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2Host-AssociatedOpen in IMG/M
3300006032Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_145EnvironmentalOpen in IMG/M
3300006046Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_101EnvironmentalOpen in IMG/M
3300006755Agricultural soil microbial communities from Georgia to study Nitrogen management - GA PlitterEnvironmentalOpen in IMG/M
3300006791Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_102EnvironmentalOpen in IMG/M
3300006796Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114EnvironmentalOpen in IMG/M
3300006800Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109EnvironmentalOpen in IMG/M
3300006845Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5Host-AssociatedOpen in IMG/M
3300006854Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4Host-AssociatedOpen in IMG/M
3300006871Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3Host-AssociatedOpen in IMG/M
3300006914Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5Host-AssociatedOpen in IMG/M
3300006954Agricultural soil microbial communities from Georgia to study Nitrogen management - GA ControlEnvironmentalOpen in IMG/M
3300009012Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159EnvironmentalOpen in IMG/M
3300009137Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158EnvironmentalOpen in IMG/M
3300009162Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2Host-AssociatedOpen in IMG/M
3300009840Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105AEnvironmentalOpen in IMG/M
3300010128Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Met_40_2_24_1 metaT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300010321Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_09212015EnvironmentalOpen in IMG/M
3300010333Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_40cm_2_24_1 metaGEnvironmentalOpen in IMG/M
3300010335Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_09082015EnvironmentalOpen in IMG/M
3300010373Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4EnvironmentalOpen in IMG/M
3300011000Agricultural soil microbial communities from Tamara ranch near Red Deer, Alberta, Canada - d1t6i015EnvironmentalOpen in IMG/M
3300011003Agricultural soil microbial communities from Tamara ranch near Red Deer, Alberta, Canada - d1t9i015EnvironmentalOpen in IMG/M
3300012198Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_20_16 metaGEnvironmentalOpen in IMG/M
3300012201Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_40_16 metaGEnvironmentalOpen in IMG/M
3300012204Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_100_16 metaGEnvironmentalOpen in IMG/M
3300012206Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_100_16 metaGEnvironmentalOpen in IMG/M
3300012208Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_20_16 metaGEnvironmentalOpen in IMG/M
3300012354Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_60_16 metaGEnvironmentalOpen in IMG/M
3300012355Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_113_16 metaGEnvironmentalOpen in IMG/M
3300012356Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_40_16 metaGEnvironmentalOpen in IMG/M
3300012360Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_113_16 metaGEnvironmentalOpen in IMG/M
3300012380Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_40cm_2_0_2 metaT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300012410Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_40cm_5_16_2 metaT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300012915Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S103-311B-2EnvironmentalOpen in IMG/M
3300012989Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_237_MGEnvironmentalOpen in IMG/M
3300014150Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_20cm_5_24_1 metaGEnvironmentalOpen in IMG/M
3300014325Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaGHost-AssociatedOpen in IMG/M
3300014497Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaGHost-AssociatedOpen in IMG/M
3300014969Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaGHost-AssociatedOpen in IMG/M
3300015357Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_20cm_5_0_1 metaGEnvironmentalOpen in IMG/M
3300015358Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_40cm_5_24_1 metaGEnvironmentalOpen in IMG/M
3300015372Soil combined assemblyHost-AssociatedOpen in IMG/M
3300015374Col-0 rhizosphere combined assemblyHost-AssociatedOpen in IMG/M
3300018027Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_30_coexEnvironmentalOpen in IMG/M
3300018061Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_60_b1EnvironmentalOpen in IMG/M
3300018433Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116EnvironmentalOpen in IMG/M
3300018465Populus adjacent soil microbial communities from riparian zone of Blue River, Arizona, USA - 249 ISEnvironmentalOpen in IMG/M
3300018482Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_118EnvironmentalOpen in IMG/M
3300019279Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_30 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300019875Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U3s2EnvironmentalOpen in IMG/M
3300019878Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U2m2EnvironmentalOpen in IMG/M
3300019890Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1c1EnvironmentalOpen in IMG/M
3300025910Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025922Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025944Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes)EnvironmentalOpen in IMG/M
3300026078Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300026536Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_147 (SPAdes)EnvironmentalOpen in IMG/M
3300026547Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_124 (SPAdes)EnvironmentalOpen in IMG/M
3300026550Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_145 (SPAdes)EnvironmentalOpen in IMG/M
3300026552Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109 (SPAdes)EnvironmentalOpen in IMG/M
3300027787Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter (SPAdes)EnvironmentalOpen in IMG/M
3300027909Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5 (SPAdes)Host-AssociatedOpen in IMG/M
3300028715Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_203EnvironmentalOpen in IMG/M
3300028718Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_194EnvironmentalOpen in IMG/M
3300028784Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_121EnvironmentalOpen in IMG/M
3300028791Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_144EnvironmentalOpen in IMG/M
3300028807Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_186EnvironmentalOpen in IMG/M
3300028811Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_149EnvironmentalOpen in IMG/M
3300028814Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_183EnvironmentalOpen in IMG/M
3300028828Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_202EnvironmentalOpen in IMG/M
3300028881Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_116EnvironmentalOpen in IMG/M
3300028884Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_195EnvironmentalOpen in IMG/M
3300028885Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_185EnvironmentalOpen in IMG/M
3300031720Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515EnvironmentalOpen in IMG/M

Geographical Distribution
Zoom:     Powered by OpenStreetMap


 ⦗Top⦘

Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
4PV_017605002170459015Switchgrass, Maize And Mischanthus LitterIGDNASSREDPMVEVRVIVDDDVSVHGLMRRLAALFGRSAISFDQSCNEVRVDSEWESRALVAVIEAVQTWIDEVGGQGVRMSIGEHSYYLEAGPRPLPARL
INPhiseqgaiiFebDRAFT_10026441713300000364SoilMVEIRVAVDDDTSVHGLMRRLAALFGRSAISFDRSCNEVRIVSEWESRGVLGVIDAVESWIDEDGGERARLSIGEHSYMLAGPRLLPTGR
JGI10216J12902_10372750713300000956SoilMVEIRVAVDDDMRVHGLMRRLAALFDRSAISFDHSCNEVRVESEWESRALVGVIEAVEAWIDEVGAKGAKLSIGEHSYYLEAGPRPLPAGR*
JGI10216J12902_10781496113300000956SoilMVEIRVTVDDDMGVHALMRRLAALFGRSAISFDHSRSEVRVESEWESRALVEVIETVEAWIAEVGGKGARLSIGEHSYYLEAEADPRPLQVGR*
JGI10216J12902_10876382423300000956SoilMVELRVGVEDATRALGLMRRLSALFGRSAISFDRSRNEVRVESEWESRAVVHVFDALQAWIDEDGGKGATLSIGNREAIPLW*
Ga0062592_10172814523300004480SoilMVEIRVIVDDDVSVHGLMRRLAALFGRSAISFDQSCNEVRVDSEWESRALVAVIEAVQTWIDEVGGQGVRMSIGEHSYYLEAGPRPLPAGL*
Ga0062594_10028677223300005093SoilLVEIRVGVDDATRAYGLMRRLAVLFDRSAISFDRSRTEVRVTSEWESRGVVQVIDAVEAWIEEDGGTRAVLSIGSRSYVLPAAPFAVSR*
Ga0066683_1009794523300005172SoilMVEIRVAVDDASRVPGLMRRLAGLFGRSAISFDRSRKEVRVRSEWESRGVVHVVDAVEAWLTEDGVDSATLSIGNRSYTMGGPTPLAASR*
Ga0066683_1027342823300005172SoilMVELRVGVDDATRALGLMRRLSALFGRSAISFDRSRNEVRVESEWESRAVVHVFDALQAWIDEDGGKGATLSIGNRDAIPLW*
Ga0066688_1008499913300005178SoilMVEIRVKVDDATRVHGLMRRLAALFGRAAISFDGSRNEVRVESEWESRGVVQVIDAVEAWFEEDGGTWAKLSIGRNSYLLPPPIAVGG*
Ga0066684_1055726223300005179SoilMVEIRVKVDDATRVHGLMRRLAALFGRSAISFDGSRNEVRVESEWESRGVVQVIDAVETWFEEDGGTWAKLS
Ga0066678_1058459623300005181SoilMVEIRVKVDDATRVHGLMRRLAALFGRAAISFDGSRNEVRVESEWESRGVVQVIDAVEAWFEEDGGTWAKLSIGRNSYLLPPPIAIGG*
Ga0066676_1099212123300005186SoilSREDLMVEIRVKVDDATRVHGLMRRLATLFGRSAISFDRSRNEVRVESEWESRGVVHVIDAVEAWIEEDGGTWARLSIGRNTYLLPPPIAIGG*
Ga0066675_1008729433300005187SoilVAVDDATRAHGLMRRLAALFDRSAISFDRSRKEVRVKSEWESRGVVHVVDAVEAWIEEDGGNWAVLSIGSRSYQLPSSPSLAVSR*
Ga0070705_10000685733300005440Corn, Switchgrass And Miscanthus RhizosphereMVEIRVAVDEGAGVHGLMRRLAALFGRAAVSFDGSRNEVRVESEWESRAIVGVIDAVEAWVDEQGGTGATLSIGENSYLVAGPRSLPAGG*
Ga0070708_10006344233300005445Corn, Switchgrass And Miscanthus RhizosphereMVEIRVAVDDATRVHGLMRRLAALFERSAISFDPSRKEVRVTSEWESRGVVQVIDAVEAWIEEDGGGCAVLSIGSRSHLLPASAPLAVSQ*
Ga0070706_10041350923300005467Corn, Switchgrass And Miscanthus RhizosphereMVEIRVAVDDATRVHGLMRRLAALFERSAISFDPSRKEVRVTSEWESRGVVQVIDAVEAWIEEDDGGCAVLSIGDRSHLLPASAPLAVSR*
Ga0070707_10059644523300005468Corn, Switchgrass And Miscanthus RhizosphereMVEIRVAVDEGAGVHGLMRRLAALFGRAAVSFDGSRNEVRVESEWESRAIVGVIDAVEAWVDEQGGTGATLSIGENSYLVAGPHSLPAGG*
Ga0066697_1005864933300005540SoilMVEIRVKVDDATRVHRLMRRLAALFGRSAISFDGSRNEVRVESEWESRGVVHVIDAVEAWIEEDGGTWARLSIGRNSYLLPPPIAMGG*
Ga0070695_10152160613300005545Corn, Switchgrass And Miscanthus RhizosphereMVEIRVTVDDDMGVHALMRRLAALFGRSAISFDRSRSEVRVESEWESRALVEVIETVEAWIAEVGCKGATLSIGEHSYHLEAE
Ga0070704_10177492623300005549Corn, Switchgrass And Miscanthus RhizosphereMVEICVSVEDVGRVSGLMRRLAMLFDRSSVSFDHSRKEVRVKSEWESRGVVHVVEAVEAWLAEDGVEAATLSIGDRSYRFAGPALTSALL*
Ga0070704_10181952513300005549Corn, Switchgrass And Miscanthus RhizosphereMVEIRITVDDDTSVHGLMRRLAALFGRSAISFDHSRNEVRVESEWESRALVEVIEAVEAWIDEAGGKGARMSIGEHSYYLEAGPRPLPAGG*
Ga0066695_1056529123300005553SoilMVEIRVKVDDATRVHGLMRRLATLFGRSAISFDRSRNEVRVESEWESRGVVQVIDAVEAWIGEDGGTRAMLSIGRNSYLLAPPIASGG*
Ga0066698_1018498713300005558SoilMVEIRVEVDEGTGVHGLMRRLAALFGRSAISFNRTRNEVRVESEWESRAVVGVLDAVEAWIDEEGGTGATLSIGENSYLVAGRSSPARASSW*
Ga0066698_1104727513300005558SoilMVEIRVKVDDDTRVHGLMRRLAALFGRSAISFDGSRNEVRVESEWESRGVVHVIDAVEAWIEEDGGTWAKLSIGRNTYL
Ga0066670_1059715323300005560SoilMVEIRVKVDDATRVHGLMRRLAALFGRAAISFDGSRNEVRVESEWESRGVVQVIDAVETWFEEDGGTWAKLSIGKNTYLLPPPIAIGG*
Ga0066705_1047166623300005569SoilMVEIRVKVDDATRVHGLMRRLAALFGRSAISFDGARNEVRVESEWESRGVVQVIDAVEAWFEEDGGTWAKLSIGRNTYLLPPPIAIGG*
Ga0068856_10081233323300005614Corn RhizosphereMVEIRVIVEDDVNVHGLMRSLAALFGSSAISFDRSCNEVRVDAEWESRAVVSVTDAVQAWIGEAGVRGASLWIGEDSYQLEAASPLPVGR*
Ga0066696_1011220113300006032SoilMVEIRVKVDDATRVHGLMRRLAALFGRSAISFDGSRNEVRVESEWESRGVVQVIDAVETWFEEDGGTWAKLSIGRNTYLLPPPIAIGG*
Ga0066696_1038317723300006032SoilHGLMRRLAALFDRSAISFDRSRKEVRVKSEWESRGVVHVVDAVEAWIEEDGGNWAVLSIGSRSYQLPSSPSLAVSR*
Ga0066652_10010274733300006046SoilMVEIRVAVGDAARVHGLMRRLGELFDPSAISYDRSRTEVRVTSEWESRGVVQVIDAVEAWVAEDGGTSAVLWIGSRSYLLPGPPALAASG*
Ga0079222_1135794613300006755Agricultural SoilTSALVGDEAPSREDPMVEIRVTVDDDMGVHALMRRLAALFGRAAISFDRSRSEVRVESEWESRALVEVIETVEAWIAEVGCKGARLSIGEHSYYLETEGDPRPLQVGR*
Ga0066653_1003573433300006791SoilMVEIRVAVGDATKALGLMRRLGEMFGRSAISFDGSRKEVKVTSEWESRAVVQVIDAVEEWIEEEDGTQAVLWIGDRSYSLPALPSLAASR*
Ga0066665_1100577413300006796SoilMVEIRVKVDDAMRVHGLMRRLAALFGRSAISFDGSRNEVRVESEWESRGVVHVIDAVEAWIEEDGGTWARLSIGRNSYLLPPPIAMGG*
Ga0066660_1007337023300006800SoilMVEIRVKVDDAMRVHGLMRRLAALFGRSAISFDRSRNEVRVESEWESRGVVQVIDAVETWFEEDGGTWAKLSIGKNTYLLPPPIAIGG*
Ga0075421_10033416123300006845Populus RhizosphereMVGIRVAVDDDTSVHGLMRRLAALFGRSAISFDRSCNEVRIVSEWESQGVVRVIDAVEAWINEDGGEGAALWIGEHSYSLAGPPLLPAGR*
Ga0075425_10001379633300006854Populus RhizosphereVVEIRVGVDDATRVHGLMRRLALLFDRSAISFDRARTEVRVTSEWESRGVVQVIDAVEAWIEEDGGTRAVLSIGSRSYVLPAPPFAVSR*
Ga0075425_10019114413300006854Populus RhizosphereMVEIRVTVDDDMSVHGLMRRLAALFGRSAISFDHSHNEVRVESEWESRALVGVIEAVEAWIDEVGGKGARLSIGEHSYYLEAGPRLLPAGP*
Ga0075425_10211318023300006854Populus RhizosphereMVGIRVAVDDDTSVHGLMRRLAALFGRSAISFDRSCNEVRIVSEWESQGVVRVIDAVEAWINEDGGEGAALWIGEHSYSLAGP
Ga0075434_10185009623300006871Populus RhizosphereLGIRVAVDDDTSVHGLMRRLAALFGRSAISFDRSCNEVRIVSERESQGVVRVIDAVEAWINEDGGEGAALWIGEHSYSLAGPPLLPAGR*
Ga0075436_10124889913300006914Populus RhizosphereMVEIRVTVDDDMSVHGLMRRLAALFGRSAISFDHSHNEVRVESEWESRALVGVIEAVEAWIDEVGGKGARLSIGEHSY
Ga0079219_1206865113300006954Agricultural SoilDDMGVHALMRRLAALFGRAAISFDRSRSEVRVESEWESRALVEVIETVEAWIAEVGCKGARLSIGEHSYYLETEGDPRPLQVGR*
Ga0066710_10264178413300009012Grasslands SoilMVELRVGVEDATRALGLMRRLSALFGRSAISFDRSRNEVRVESEWESRAVVRALDAVDAWSDEDGGKGATLAIGNRDAIRLWRAPMLRAAG
Ga0066709_10065164613300009137Grasslands SoilVVELRIAVDDAIHAHGLMRRLSALFGRSAISFDRSRNEVRVESEWESRAVVRALDAVDAWSDEDGGKGATLAIGNRDAIRLWRADATSGGGGIKTL
Ga0075423_1117581323300009162Populus RhizosphereMVGIRVAVDDDTSVHGLMRRLAALFGRSAISFDRSCNEVRIVSEWESQGVVRVIDAVEAWINEDGGEGATLWIGEHSYSLAGPPLLPAGR*
Ga0126313_1036273623300009840Serpentine SoilMVEIRVGIDDATRVHGLMRRLVALFERSAISFDRSRKEIRVESEWESRGIVTVIDAIEAWIEEDGGTCAMLSIGDRSYTLNAPPPLAASG*
Ga0127486_103058113300010128Grasslands SoilMVELRVGVDDATRALGLMRRLSALFGRSAISFDRSRNEVRVESEWESRAVVHVFDALQAWIDEDGGKGATLSIGNREAIPLW*
Ga0134067_1006737523300010321Grasslands SoilMVEICVKVDDATRVHGLMRRLAALFGRSAISFDGSRNEVRVESEWESRGVVQVIDAVETWFEEDGGTWAKLSIGRNKYLLPPPIAIGG*
Ga0134080_1025406313300010333Grasslands SoilMVEIRVKVDDATRVHGLMRRLAALFGRAAISFDGSRNEVRVESEWESRGVVQVIDAVEAWFEEDGGTWAKLSIGRNTYLLPPPIAIGG*
Ga0134063_1071307323300010335Grasslands SoilMVEIRVEVDEGTGVHGLMRRLAALFGRSAISFDRSRNQVRVESEWESRAVVGVLDAVEAWIDEEGGTGATLSIGENSYLVAGRSSPARASSW*
Ga0134128_1150956913300010373Terrestrial SoilMVEIRVTVDDDMGVHALMRRLAALFGRSAISFDRSRSEVRVESEWESRALVEVIETVEAWIAEVGCKGATLSIGEHSYHLEAEGDPRPLQVGR*
Ga0138513_10000508333300011000SoilMVEIRVAVDDATRIHGLIRRLGALFDRSAVSFDRSRKEIRVESEWESRGVVTVIDAVEAWIEEDGGRCAMLSIGDRSYTLPAPRPLAASH*
Ga0138514_10000293223300011003SoilMVEIRVAVDDATRVHGLMRRLVALFGRSSISFDRSRNEVRVESEWESRGVVHVIDAVEAWIDEDGGKQVTLKIGKHSYTYMLGEPPTLSVGR*
Ga0137364_1036596613300012198Vadose Zone SoilMVEIRVKVDDDTRVHGLMRRLAALFGRSAISFDGSRNEVRVESEWESRGVVHVIDAVEAWIEEDGGTWAKLSIGRNSYLLAPPIASGG*
Ga0137364_1054339913300012198Vadose Zone SoilMVEIRVAVGDATQALGLMRRLGELFGRSAISFDRSRKELKVTSEWESRAVVQVVDAVEAWIEEEGSAQAVLWIGDRSYSLPALPSLAASR*
Ga0137365_1005115323300012201Vadose Zone SoilMVEIRVKVDDDTRVHGLMRRLAALFGRSAISFDGSRNEVRVESEWESRGVVHVIDAVEAWIEEDGGTWAKLSIGRNTYLLPPPIAIGG*
Ga0137365_1116273823300012201Vadose Zone SoilSSREDLMVEIRVKVDDATRVHGLMRRLATLFGRSAISFDRSRNEVRVESEWESRGVVQVIDAVEAWIGEDGGTRAMLSIGRNSYLLAPPIASGG*
Ga0137374_1021257223300012204Vadose Zone SoilMVEIRVAVDEDTGVHGLMRRLAALFGRSAISFDRSRNEVRVESEWESRAVVGVLDAVEAWIDEEGGTGATLSIGENSYLVAGRCSPARASSW*
Ga0137380_1095731713300012206Vadose Zone SoilLVGDDASSREDLMVEIRVKVDDDTRVHGLMRRLAALFGRSAISFDGSRNEVRVESEWESRAVVGVFEAVEAWIDEEGGKSARLSIGKHSYLVAGQGSLPAGR*
Ga0137376_1036785423300012208Vadose Zone SoilMVEIRVKVDDATRVHRLMRRLAALFGRSAISFDGSRNEVRVESEWESRGVVHVIDAVEAWIEEDGGTWAKLSIGRNSYLLPPPIAMGG*
Ga0137366_1002387943300012354Vadose Zone SoilLVGDDASSREDLMVEIRVKVDDDTRVHGLMRRLAALFGRSAISFDGSRNEVRVESEWESRGVVHVIDAVEAWIEEDGGTWAKLSIGRNTYLLPPPIAIGG*
Ga0137369_1031790623300012355Vadose Zone SoilLVEICVAVDDGTSVHGLMRRLAALFGRSAISFDRSRNEIRVESEWESRSVVGVIDAVEAWINEDGAVGARLSIGEQSYTLAGPPLRSAGR*
Ga0137371_1041170033300012356Vadose Zone SoilMVEIRVAVDDATRVHGLMRRLVALFGRSSISFDRSRNEVRVESEWESRGVVHVIDAVEAWIDEDGGKGAMLSIGAHSYTVAAPPFALRR*
Ga0137375_1093569213300012360Vadose Zone SoilMVEIRVAVDEDTGVHGLMRRLAALFGRSAISFDRSRNEVRVESEWESRAVVGVLDAVEAWIDEEGGTGATLSIGENSYLVAGRSSPARASSW*
Ga0134047_122531713300012380Grasslands SoilMVEIRVAVGDATKALGLMRRLGEMFGRSAISFDGSRKEVKVTSEWESRAVVQVIDAVEEWIEEDDGTQAVLWIGDRSYSLPALPSLAASR*
Ga0134060_104154513300012410Grasslands SoilMVELRVGVEDATRALGLMRRLSALFGRSAISFDRSRNEVRVESEWESRAVVHVFDALQAWIDEDGGKGATLSIGNRDAIPLW*
Ga0157302_1008065023300012915SoilMVEIRVIVDDDVSVHGLMRRLAALFGRSAISFDQSCNEVRVDSEWESRALVAVIEAVQTWIDEVGGQGVRMSIGEHSYYLEAGPRPLPARL*
Ga0164305_1068575813300012989SoilVNVPGLMWRLAALFGSSAISFDQSCNEVRVDAEWESRAVVSVTDAVQAWIDEAGVQGANLWIGEHSYRLEAARPLPAAR*
Ga0134081_1031028123300014150Grasslands SoilLRLVGDDASSREDPMVEIRVKVDDATRVHRLMRRLAALFGRSAISFDGSRNEVRVEAEWESRGVVHVIDAVEAWIEEDGGTWAKLSIGRNTYLLPPPIAIGG*
Ga0163163_1059680213300014325Switchgrass RhizosphereIRVGVDDATRAYGLMRRLAVLFDRSAISFDRSRTEVRVTSEWESRGVVQVIDAVEAWIEEDGGTRAVLSIGSRSYVLPAAPFAVSR*
Ga0182008_1058919813300014497RhizosphereMVEIRVTVDDDMGVHALMRRLAALFGRSAISFDHSRSEVRVESEWESRALVEVIETVEAWIAEVDGKGARLSIGEHSYYLEAVADPRPLQVGR*
Ga0182008_1071732713300014497RhizosphereHGLMRRLAVLFDRSAVSFDRSRKEVRVASEWDSRGVVQVIDAVEAWIEEDGDTSAVLSIGARSYVLAKSPPLAAG*
Ga0157376_1130075213300014969Miscanthus RhizosphereLVEIRVGVDDATRAYGLMRRLAVLFDRSAISFDRSRTEVRVTSEWESRGVVQVIDAVEAWIEEDGGTRAVLSIGSR
Ga0134072_1041058313300015357Grasslands SoilMVEIRVKVDDDTRVHGLMRRLAALFGRSAISFDGSRNEVRVESEWESRGVVHVIDAVEAWIEEDGGTWARLSIGRNSYLLPSDCDGRMIAGASSSITSTRRSRGPA
Ga0134089_1051294113300015358Grasslands SoilMRAPNEEDPMVELRVGVDDATRAHGLMRRLSALFGRSAISFDRSQNEVRIQSEWESRSVVYVFDALQAWIDEDGGKGATLSIGNREAIPLW*
Ga0132256_10006225233300015372Arabidopsis RhizosphereMVEIRVAIGDGTNLHGLVRRLAALFGQSAISFERSRNEVLIVSEWESRGVVAVIDAVEAWIDEDAGQGARLSIGEHSYMLAGRPLLPAG*
Ga0132255_10029560623300015374Arabidopsis RhizosphereMVEIRVAIGDDTNLHGLVRRLAARFGQSAISFERSRNEVLIVSEWESRGVVAVIDAVEAWIDEDGGKGARLSIGEHSYMLAGRPLLPAG*
Ga0184605_10000533103300018027Groundwater SedimentMVEIRVAVDDATRVHGLIRRLRALFDRSAVSFDRSRKEIRVESEWESRGVVTVIDAIEAWIEEDGGRCAMLSIGDRSYTLPAPSPLAASH
Ga0184605_1000787913300018027Groundwater SedimentMVEIRVAVEDGTGVHGLMRRLAALFGRSAISFDGSRNEVRVESEWESRAVVGVFEAVEAWIDEEGGKSARLSIGKHSYLVAGRRSLPAGG
Ga0184605_1001723713300018027Groundwater SedimentAVDDETRVHGLMRRLAALFDRSAISFDRSRKEVRVKSEWESRGVVHVIDAVEAWIEEDGGTWAKLSIGRNSYLLPPPIAMGG
Ga0184605_1034337513300018027Groundwater SedimentMVEIRVAVDDATRVHGLMRRLRALFDRSAVSFDRSRKEIKVESEWESRGVVTVIDAVEAWIEEDGGRCAMLSI
Ga0184619_1000166973300018061Groundwater SedimentMVEIRVKVDDATRVHGLMRRLAALFGRSAISFDGSRNEVRVESEWESRGVVHVIDAVEAWIEEDGGTWAKLSIGRNSYLLPPPIAMGG
Ga0066667_1001487053300018433Grasslands SoilMVEIRVKVDDATRVHRLMRRLAALFGRSAISFDGSRNEVRVESEWESRGVVHVIDAVEAWIEEDGGTWARLSIGRNSYLLPPPIAMGG
Ga0066667_1023175713300018433Grasslands SoilMVELRVGVEDATRALGLMRRLSALFGRSAISFDRSRNEVRVESEWESRAVVHVFDALQAWIDEDGGKGATLSIGNREAIPLW
Ga0190269_1033691623300018465SoilMVEIRVAVDDATRIHGLIRRLGALFDRSAVSFDRSRKEIRVESEWESRGVVTVIDAVEAWIEEDGGRCAMLSIGDRSYTLPAPRPLAASH
Ga0066669_1057140123300018482Grasslands SoilMVEIRVAVGDATQALGLMRRLGEMFGRSAISFDGSRKEVKVTSEWESRAVVQVIDAVEEWIEEEDGTQAVLWIGDRSYSLPALPSLAASR
Ga0066669_1077118523300018482Grasslands SoilMVEIRVKVDDATRVHRLMRRLAALFGRSAISFDGSRNEVRVESEWESRGVVHVIDAVEAWIEEDGGTWAKLSIGRNTYLLPPPIAIGG
Ga0184642_114819513300019279Groundwater SedimentMVEIRVAVDDATRVHGLMRRLAARFDRSAISFDRSRKEVRVKSEWESRGVVHVIDAVEGWIEEDGGTWALLSIGSRSYALPASPPLAVSR
Ga0184642_141538523300019279Groundwater SedimentMVEIRVGVDDATSVHGLMRRLAALFGRSAISFDHSRNEVRVESEWESRGVVGVIDAVEAWIDEDGGEGAILSIGKHSYMLAGPHPLAAGR
Ga0184642_155921823300019279Groundwater SedimentVAVDDATRVHGLMRRLRALFDRSAVSFDRSRKEIKVESEWESRGVVTVIDAVEAWIEEDGGRCAMLSIGDRSYTLPAPRPLAASH
Ga0193701_102592813300019875SoilMVEIRVTVDDDMGVHGLMRRLAALFGRSAISFDHSCNEVRVESEWESRGVVTVIDAIEAWIEEDGGRCAMLSIGDRSYTLPAPRPLAASH
Ga0193715_107133123300019878SoilMVEIRVAVDDATRVHGLMRRLAALFDRSAISFDRSRKEVRVRSEWESRGVVHVIDAVEGWIEEDGGTWAVLSIGSRSYALPASPPLAVSR
Ga0193728_109275023300019890SoilMVEIRVAVADDTSVHGLMRRLADIFDRSAISFERSCNEVRVESEWESRAVMGVIDAVKAWIDEEGGGTGARLSIGAHSYQLEGARPLRAVR
Ga0207684_1021482723300025910Corn, Switchgrass And Miscanthus RhizosphereMVEIRVAVDEGAGVHGLMRRLAALFGRAAVSFDGSRNEVRVESEWESRAIVGVIDAVEAWVDEQGGTGATLSIGENSYLVAGPRSLPAGG
Ga0207684_1152936123300025910Corn, Switchgrass And Miscanthus RhizosphereMVEIRVAVDDATRVHGLMRRLAALFERSAISFDPSRKEVRVTSEWESRGVVQVIDAVEAWIEEDDGGCAVLSIGDRSHLLPASAPLAVSR
Ga0207646_1039229223300025922Corn, Switchgrass And Miscanthus RhizosphereMVEIRVAVDEGAGVHGLMRRLAALFGRAAVSFDGSRNEVRVESEWESRAIVGVIDAVEAWVDEQGGTGATLSIGENSYLVAGPHSLPAGG
Ga0207661_1001116663300025944Corn RhizosphereLVEIRVGVDDATRAYGLMRRLAVLFDRSAISFDRSRTEVRVTSEWESRGVVQVIDAVEAWIEEDGGTRAVLSIGSRSYVLPAAPFAVSR
Ga0207702_1005045033300026078Corn RhizosphereMVEIRVIVEDDVNVHGLMRSLAALFGSSAISFDRSCNEVRVDAEWESRAVVSVTDAVQAWIGEAGVRGASLWIGEDSYQLEAASPLPVGR
Ga0209058_114684713300026536SoilMVEIRVEVDEGTGVHGLMRRLAALFGRSAISFNRTRNEVRVESEWESRAVVGVLDAVEAWIDEEGGTGATLSIGENSYLVAGRSSPARASSW
Ga0209156_1009847023300026547SoilAVDDATRAHGLMRRLAALFDRSAISFDRSRKEVRVKSEWESRGVVHVVDAVEAWIEEDGGNWAVLSIGSRSYQLPSSPSLAVSR
Ga0209474_1063460213300026550SoilMVEIRVAVDDATRAHGLMRRLAALFDRSAISFDRSRKEVRVKSEWESRGVVHVVDAVEAWIEEDGGNWAVLSIGSRSYQLPSSPSLAVSR
Ga0209577_1027021723300026552SoilMVEIRVKVDDAMRVHGLMRRLAALFGRSAISFDRSRNEVRVESEWESRGVVQVIDAVETWFEEDGGTWAKLSIGKNTYLLPPPIAIGG
Ga0209074_1020093433300027787Agricultural SoilMVEIRVTVDDDMGVHALMRRLAALFGRAAISFDRSRSEVRVESEWESRALVEVIETVEAWIAEVGCKGARLSIGEHSYYLETEGDPRPLQVGR
Ga0209382_1096938023300027909Populus RhizosphereMVGIRVAVDDDTSVHGLMRRLAALFGRSAISFDRSCNEVRIVSEWESQGVVRVIDAVEAWINEDGGEGAALWIGEHSYSLAGPPLLPAGR
Ga0307313_1001563023300028715SoilMVEIRVTVDDDMGVHWLMRRLAALFGRSAISFDHSCNEVRVESEWESRGVVEVIEAVEAWIDEVGGKGARLSIGEHSYFLEAGPRPLPAGR
Ga0307307_1000037323300028718SoilMVEIRVTVDDDMGVHGLMRRLAALFGRSAISFDHSCNEVRVESEWESRGVVEVIEAVEAWIDEVGGKGARLSIGEHSYFLEAGPRPLPAGR
Ga0307282_1054669523300028784SoilIRVAVDDATRIHGLIRRLGALFDRSAVSFDRSRKEIRVESEWESRGVVTVIDAVEAWIEEDGGRCAMLSIGDRSYTLPAPRPLAASH
Ga0307290_1003692113300028791SoilMVEIRVAVDDATRIHGLIRRLGALFDRSAVSFDRSRKEIRVESEWESRGVVTVIDAIEAWIEEDGGRCAMLSIGDRSYTLPAPSPLAASH
Ga0307305_1000490083300028807SoilATRVHGLMRRLAALFDRSAISFDRSRKEVRVRSEWESRGVVHVIDAVEGWIEEDGGTWAVLSIGSRSYALPASPPLAVSR
Ga0307305_1028340223300028807SoilMVEIRVAVDDATRVHGLMRRLVALFGRSSISFDRSRNEVRVESEWESRGVVHVIDAVEAWIDEDGGKQVTLKIGKHSYMLGEPPTLSVSR
Ga0307292_1019926113300028811SoilMVEIRVAVDDATRIHGLIRRLGALFDRSAVSFDRSRKEIRVESEWESRGVVTVIDAVEAWIEEDGGRCAMLSIGDRSYTLPAPSPLAASH
Ga0307302_1000473643300028814SoilMVEIRVAVDDARRVHGLVRRLAALFDRSAVSFDRSRKEIRVESEWESRGVVTVIDAIEAWIDEDGGRCAMLSIGDRSYTLPAPPPLAVSR
Ga0307302_1036929613300028814SoilMVEIRVGVDDATRVHGLMRRLAALFDRSAISFDRSRKEVRVESEWESRGVVHVIDAVEGWIEEDGGTWAVLSIGSRSYVLPASPPLAVSR
Ga0307312_1095764523300028828SoilMVEIRVAVDEGSGVHGLMRRLAALFGRSAISFDRSHNEVRVESEWESRAIVGVLDAVEARIDEEGGTGATLSIGENSYLVAGRSSTARASSW
Ga0307277_10000080333300028881SoilMVEIRVAVDEGAGVHGLMRRLAALFGRSAISFDRSRNEVRVESEWESRAVVEVIDAVEAWVDEEGGTGATLSIGENSYLVAGRRSLRAGG
Ga0307308_1034538723300028884SoilMVEIRVAVADDTSVHGLMRRLADIFDRSAISFERSCNEVRVESEWESRAVMGVIDAVKAWIDEEAGGTGARLSIGAHSYQLEGARPLRAVR
Ga0307304_1018380023300028885SoilMVEIRVAVDDATRIHGLIRRLGALLDRSAVSFDRSRKEIRVESEWESRGVVTVIDAVEAWIEEDGGRCAMLSIGDRSYTLPAPRPLAASH
Ga0307469_1206271613300031720Hardwood Forest SoilIRVAVDEGAGVHGLMRRLAALFGRSAISFNRSRNEVRVESEWESRGIVGVIDAVEAWIDEEGGTGATLSIGEKSYLLAGRRSVPAGP

 ⦗Top⦘


Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.