Metagenome / Metatranscriptome Family F075815

Basic Information
Family ID	F075815
Family Type	Metagenome / Metatranscriptome
Number of Sequences	118
Average Sequence Length	79 residues
Representative Sequence	MKRMLKPAEESATGGPVQGQVPHVRVRCKEEFSADELALLQAKLEGWMRAVATKSESKRPRHQFVMKAKNAGRV
Number of Associated Samples	86
Number of Associated Scaffolds	118

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	76.27 %
% of genes near scaffold ends (potentially truncated)	27.12 %
% of genes from short scaffolds (< 2000 bps)	84.75 %
Associated GOLD sequencing projects	81
AlphaFold2 3D model prediction	No

Most Common Taxonomy
Group	Bacteria (59.322 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment (24.576 % of family members)
Environment Ontology (ENVO)	Unclassified (24.576 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Subsurface (non-saline) (27.119 % of family members)

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 40.54% β-sheet: 2.70% Coil/Unstructured: 56.76%
Feature Viewer

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Pfam ID	Name	% Frequency in 118 Family Scaffolds
PF05198	IF3_N	38.98
PF01165	Ribosomal_S21	34.75
PF00313	CSD	13.56
PF00800	PDT	5.08
PF00496	SBP_bac_5	1.69
PF02153	PDH_N	1.69
PF02738	MoCoBD_1	1.69
PF12911	OppC_N	0.85

COG ID	Name	Functional Category	% Frequency in 118 Family Scaffolds
COG0290	Translation initiation factor IF-3	Translation, ribosomal structure and biogenesis [J]	38.98
COG0828	Ribosomal protein S21	Translation, ribosomal structure and biogenesis [J]	34.75
COG0077	Prephenate dehydratase	Amino acid transport and metabolism [E]	5.08
COG0287	Prephenate dehydrogenase	Amino acid transport and metabolism [E]	1.69

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	60.17 %
Unclassified	root	N/A	39.83 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	60.17 %
Unclassified	root	N/A	39.83 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	59.32 %
Unclassified	root	N/A	39.83 %
Archaea	superkingdom	All Organisms → cellular organisms → Archaea	0.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	39.83 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	18.64 %
unclassified Bacteria	no rank	All Organisms → cellular organisms → Bacteria → unclassified Bacteria	13.56 %
DPANN group	clade	All Organisms → cellular organisms → Archaea → DPANN group	0.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	39.83 %
bacterium	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	13.56 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	9.32 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	5.08 %
Candidatus Pacearchaeota	clade	All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Pacearchaeota	0.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	39.83 %
bacterium	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	13.56 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	9.32 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	0.85 %
Candidatus Pacearchaeota archaeon CG06_land_8_20_14_3_00_35_12	species	All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Pacearchaeota → Candidatus Pacearchaeota archaeon CG06_land_8_20_14_3_00_35_12	0.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	39.83 %
bacterium	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	13.56 %
Myxococcales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales	0.85 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	0.85 %
Candidatus Pacearchaeota archaeon CG06_land_8_20_14_3_00_35_12	species	All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Pacearchaeota → Candidatus Pacearchaeota archaeon CG06_land_8_20_14_3_00_35_12	0.85 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000033\|ICChiseqgaiiDRAFT_c1633099	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	521	Open in IMG/M
3300000033\|ICChiseqgaiiDRAFT_c2007466	Not Available	891	Open in IMG/M
3300000559\|F14TC_103326196	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1421	Open in IMG/M
3300000956\|JGI10216J12902_110455948	All Organisms → cellular organisms → Bacteria	954	Open in IMG/M
3300003373\|JGI25407J50210_10020314	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1727	Open in IMG/M
3300004463\|Ga0063356_101165883	Not Available	1116	Open in IMG/M
3300005536\|Ga0070697_100869762	All Organisms → cellular organisms → Bacteria	799	Open in IMG/M
3300005937\|Ga0081455_10754133	All Organisms → cellular organisms → Bacteria	615	Open in IMG/M
3300005981\|Ga0081538_10011564	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	7142	Open in IMG/M
3300005981\|Ga0081538_10015400	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	5921	Open in IMG/M
3300005981\|Ga0081538_10029833	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	3717	Open in IMG/M
3300005981\|Ga0081538_10238298	Not Available	704	Open in IMG/M
3300005981\|Ga0081538_10301160	Not Available	589	Open in IMG/M
3300006844\|Ga0075428_101406310	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	732	Open in IMG/M
3300006845\|Ga0075421_100048161	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	5399	Open in IMG/M
3300006845\|Ga0075421_100182421	All Organisms → cellular organisms → Bacteria → Proteobacteria	2609	Open in IMG/M
3300006846\|Ga0075430_100790739	Not Available	782	Open in IMG/M
3300006846\|Ga0075430_101404877	All Organisms → cellular organisms → Bacteria	574	Open in IMG/M
3300006847\|Ga0075431_101243331	All Organisms → cellular organisms → Bacteria	707	Open in IMG/M
3300006853\|Ga0075420_100516328	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1032	Open in IMG/M
3300007004\|Ga0079218_11657743	Not Available	705	Open in IMG/M
3300009081\|Ga0105098_10805872	Not Available	507	Open in IMG/M
3300009100\|Ga0075418_10766432	Not Available	1041	Open in IMG/M
3300009146\|Ga0105091_10285202	Not Available	803	Open in IMG/M
3300009156\|Ga0111538_12469449	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales	652	Open in IMG/M
3300009157\|Ga0105092_10059858	All Organisms → cellular organisms → Bacteria → Proteobacteria	2053	Open in IMG/M
3300009168\|Ga0105104_10000981	All Organisms → cellular organisms → Bacteria	22254	Open in IMG/M
3300009837\|Ga0105058_1177444	Not Available	526	Open in IMG/M
3300010038\|Ga0126315_10875603	Not Available	596	Open in IMG/M
3300010041\|Ga0126312_10224137	All Organisms → cellular organisms → Bacteria → Proteobacteria	1317	Open in IMG/M
3300010042\|Ga0126314_10377683	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1019	Open in IMG/M
3300010043\|Ga0126380_10267363	All Organisms → cellular organisms → Bacteria → Proteobacteria	1195	Open in IMG/M
3300010046\|Ga0126384_12447619	Not Available	506	Open in IMG/M
3300010100\|Ga0127440_1009603	Not Available	534	Open in IMG/M
3300010137\|Ga0126323_1193427	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	694	Open in IMG/M
3300010145\|Ga0126321_1099114	All Organisms → cellular organisms → Bacteria	982	Open in IMG/M
3300010145\|Ga0126321_1153224	All Organisms → cellular organisms → Bacteria	1577	Open in IMG/M
3300010145\|Ga0126321_1472390	Not Available	945	Open in IMG/M
3300011333\|Ga0127502_10039654	All Organisms → cellular organisms → Bacteria	1731	Open in IMG/M
3300012212\|Ga0150985_100366829	All Organisms → cellular organisms → Bacteria	2010	Open in IMG/M
3300012212\|Ga0150985_105750170	All Organisms → cellular organisms → Bacteria	1745	Open in IMG/M
3300012360\|Ga0137375_10572362	Not Available	946	Open in IMG/M
3300012685\|Ga0137397_10952689	Not Available	634	Open in IMG/M
3300012922\|Ga0137394_10030045	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	4409	Open in IMG/M
3300012929\|Ga0137404_10201728	All Organisms → cellular organisms → Bacteria	1685	Open in IMG/M
3300012930\|Ga0137407_10417281	All Organisms → cellular organisms → Bacteria	1245	Open in IMG/M
3300017997\|Ga0184610_1020856	All Organisms → cellular organisms → Bacteria	1762	Open in IMG/M
3300018076\|Ga0184609_10017595	All Organisms → cellular organisms → Bacteria	2783	Open in IMG/M
3300018422\|Ga0190265_10791052	Not Available	1071	Open in IMG/M
3300018466\|Ga0190268_10087810	All Organisms → cellular organisms → Bacteria	1398	Open in IMG/M
3300019228\|Ga0180119_1343950	All Organisms → cellular organisms → Bacteria	1985	Open in IMG/M
3300019229\|Ga0180116_1129345	All Organisms → cellular organisms → Bacteria	1420	Open in IMG/M
3300019229\|Ga0180116_1132695	All Organisms → cellular organisms → Bacteria	1446	Open in IMG/M
3300019229\|Ga0180116_1167640	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	807	Open in IMG/M
3300019229\|Ga0180116_1274081	Not Available	2025	Open in IMG/M
3300019233\|Ga0184645_1242684	Not Available	767	Open in IMG/M
3300019233\|Ga0184645_1315697	Not Available	1470	Open in IMG/M
3300019244\|Ga0180111_1443245	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	532	Open in IMG/M
3300019248\|Ga0180117_1106358	Not Available	527	Open in IMG/M
3300019248\|Ga0180117_1144659	All Organisms → cellular organisms → Bacteria	1273	Open in IMG/M
3300019249\|Ga0184648_1216630	All Organisms → cellular organisms → Bacteria	2262	Open in IMG/M
3300019249\|Ga0184648_1240744	Not Available	2144	Open in IMG/M
3300019249\|Ga0184648_1315168	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	609	Open in IMG/M
3300019249\|Ga0184648_1377088	All Organisms → cellular organisms → Bacteria → Proteobacteria	1112	Open in IMG/M
3300019254\|Ga0184641_1111548	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	963	Open in IMG/M
3300019254\|Ga0184641_1117241	All Organisms → cellular organisms → Bacteria	1311	Open in IMG/M
3300019254\|Ga0184641_1226698	All Organisms → cellular organisms → Bacteria	804	Open in IMG/M
3300019255\|Ga0184643_1044146	Not Available	1411	Open in IMG/M
3300019255\|Ga0184643_1135916	All Organisms → cellular organisms → Bacteria	2118	Open in IMG/M
3300019259\|Ga0184646_1003065	Not Available	769	Open in IMG/M
3300019259\|Ga0184646_1218016	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1312	Open in IMG/M
3300019259\|Ga0184646_1312290	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	1336	Open in IMG/M
3300019259\|Ga0184646_1409869	Not Available	541	Open in IMG/M
3300019269\|Ga0184644_1789342	Not Available	544	Open in IMG/M
3300019279\|Ga0184642_1052225	All Organisms → cellular organisms → Bacteria	1472	Open in IMG/M
3300019279\|Ga0184642_1312292	Not Available	1488	Open in IMG/M
3300019767\|Ga0190267_10829989	Not Available	620	Open in IMG/M
3300019789\|Ga0137408_1048935	All Organisms → cellular organisms → Bacteria	1463	Open in IMG/M
3300020065\|Ga0180113_1396428	Not Available	1174	Open in IMG/M
3300020066\|Ga0180108_1242567	All Organisms → cellular organisms → Bacteria	1425	Open in IMG/M
3300020067\|Ga0180109_1251551	Not Available	706	Open in IMG/M
3300027722\|Ga0209819_10174476	Not Available	751	Open in IMG/M
3300027743\|Ga0209593_10002905	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	7208	Open in IMG/M
3300027909\|Ga0209382_10043187	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	5398	Open in IMG/M
3300030006\|Ga0299907_10868554	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	674	Open in IMG/M
3300030006\|Ga0299907_10902386	All Organisms → cellular organisms → Bacteria	657	Open in IMG/M
3300030552\|Ga0247654_1153296	Not Available	558	Open in IMG/M
3300030563\|Ga0247653_1055753	Not Available	584	Open in IMG/M
3300030571\|Ga0247652_1001310	Not Available	1383	Open in IMG/M
3300030574\|Ga0247648_1008740	All Organisms → cellular organisms → Bacteria	1218	Open in IMG/M
3300030592\|Ga0247612_1163835	Not Available	557	Open in IMG/M
3300030592\|Ga0247612_1215952	Not Available	501	Open in IMG/M
3300030619\|Ga0268386_10209137	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1458	Open in IMG/M
3300030621\|Ga0247655_10030483	Not Available	974	Open in IMG/M
3300030634\|Ga0247636_10068218	All Organisms → cellular organisms → Bacteria	907	Open in IMG/M
3300030829\|Ga0308203_1002043	All Organisms → cellular organisms → Bacteria	1757	Open in IMG/M
3300030830\|Ga0308205_1000229	All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Pacearchaeota → Candidatus Pacearchaeota archaeon CG06_land_8_20_14_3_00_35_12	2860	Open in IMG/M
3300030830\|Ga0308205_1015893	Not Available	821	Open in IMG/M
3300030830\|Ga0308205_1048206	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	562	Open in IMG/M
3300030831\|Ga0308152_101379	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1086	Open in IMG/M
3300030902\|Ga0308202_1007804	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	1411	Open in IMG/M
3300030902\|Ga0308202_1161622	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	505	Open in IMG/M
3300030903\|Ga0308206_1033828	Not Available	944	Open in IMG/M
3300030987\|Ga0308155_1023751	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	580	Open in IMG/M
3300030993\|Ga0308190_1013186	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	1247	Open in IMG/M
3300031058\|Ga0308189_10426199	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	555	Open in IMG/M
3300031081\|Ga0308185_1025822	Not Available	694	Open in IMG/M
3300031092\|Ga0308204_10035981	Not Available	1129	Open in IMG/M
3300031092\|Ga0308204_10043480	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	1060	Open in IMG/M
3300031094\|Ga0308199_1133469	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	577	Open in IMG/M
3300031124\|Ga0308151_1041550	Not Available	540	Open in IMG/M
3300031125\|Ga0308182_1015659	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	615	Open in IMG/M
3300031901\|Ga0307406_10012508	Not Available	4838	Open in IMG/M
3300031901\|Ga0307406_11221402	Not Available	653	Open in IMG/M
3300033417\|Ga0214471_10380376	Not Available	1140	Open in IMG/M
3300034643\|Ga0370545_037647	Not Available	897	Open in IMG/M
3300034659\|Ga0314780_169237	Not Available	551	Open in IMG/M
3300034680\|Ga0370541_000882	All Organisms → cellular organisms → Bacteria	1982	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	81.36%
Host-Associated	Host-Associated	18.64%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	45.76%
Aquatic	Environmental → Aquatic	35.59%
Plants	Host-Associated → Plants	18.64%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	45.76%
Freshwater	Environmental → Aquatic → Freshwater	33.90%
Rhizosphere	Host-Associated → Plants → Rhizosphere	10.17%
Roots	Host-Associated → Plants → Roots	5.08%
Rhizoplane	Host-Associated → Plants → Rhizoplane	3.39%
Sediment	Environmental → Aquatic → Sediment	1.69%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	43.22%
Sediment	Environmental → Aquatic → Freshwater → Sediment	29.66%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	10.17%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	5.08%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	4.24%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	1.69%
Loam	Environmental → Terrestrial → Soil → Loam	1.69%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	1.69%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	1.69%
Sand	Environmental → Terrestrial → Soil → Sand	0.85%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	31.36%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	29.66%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	10.17%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	6.78%
Unclassified	Host-Associated → Plants → Roots → Rhizosphere → Unclassified	5.08%
Unclassified	Environmental → Aquatic → Freshwater → Groundwater → Unclassified	4.24%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	2.54%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	1.69%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	1.69%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	1.69%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.85%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	0.85%
Uranium Contaminated	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated	0.85%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.85%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	0.85%
Unclassified	Environmental → Terrestrial → Soil → Sand → Unclassified	0.85%

Habitat	Taxonomy	Distribution
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	24.58%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	21.19%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	8.47%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	6.78%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment	5.08%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	5.08%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Unclassified → Tabebuia Heterophylla Rhizosphere	5.08%
Soil	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil	4.24%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	2.54%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	2.54%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	1.69%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	1.69%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	1.69%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	1.69%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	0.85%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.85%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	0.85%
Soil	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated → Soil	0.85%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.85%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	0.85%
Groundwater Sand	Environmental → Terrestrial → Soil → Sand → Unclassified → Groundwater Sand	0.85%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere	0.85%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	0.85%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000033	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300000559	Amended soil microbial communities from Kansas Great Prairies, USA - control no BrdU total DNA F1.4 TC clc assemly	Environmental	Open in IMG/M
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300003373	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1	Host-Associated	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300005536	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG	Environmental	Open in IMG/M
3300005937	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1	Host-Associated	Open in IMG/M
3300005981	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1	Host-Associated	Open in IMG/M
3300006844	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2	Host-Associated	Open in IMG/M
3300006845	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5	Host-Associated	Open in IMG/M
3300006846	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4	Host-Associated	Open in IMG/M
3300006847	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5	Host-Associated	Open in IMG/M
3300006853	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD4	Host-Associated	Open in IMG/M
3300007004	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Compost	Environmental	Open in IMG/M
3300009081	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 19-21cm May2015	Environmental	Open in IMG/M
3300009100	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2	Host-Associated	Open in IMG/M
3300009146	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 10-12cm March2015	Environmental	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300009157	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 19-21cm March2015	Environmental	Open in IMG/M
3300009168	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (6) Depth 19-21cm September2015	Environmental	Open in IMG/M
3300009837	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N1_20_30	Environmental	Open in IMG/M
3300010038	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot106	Environmental	Open in IMG/M
3300010041	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot104A	Environmental	Open in IMG/M
3300010042	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105B	Environmental	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010100	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Wat_20_5_0_2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010137	Soil microbial communities from California, USA to study soil gas exchange rates - SR-CA-SC1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010145	Soil microbial communities from Hawaii, USA to study soil gas exchange rates - KP-HI-INT metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300011333	Cornfield soil microbial communities from Stanford, California, USA - CI-CA-CRN metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012212	Combined assembly of Hopland grassland soil	Host-Associated	Open in IMG/M
3300012360	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_113_16 metaG	Environmental	Open in IMG/M
3300012685	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaG	Environmental	Open in IMG/M
3300012922	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk1.16 metaG	Environmental	Open in IMG/M
3300012929	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012930	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300017997	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_100_coex	Environmental	Open in IMG/M
3300018076	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_60_coex	Environmental	Open in IMG/M
3300018422	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 124 T	Environmental	Open in IMG/M
3300018466	Populus adjacent soil microbial communities from riparian zone of Blue River, Arizona, USA - 249 T	Environmental	Open in IMG/M
3300019228	Metatranscriptome of soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaT ERMLT790_16_1Ra (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019229	Metatranscriptome of soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaT ERMLT660_1_16_1Ra (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019233	Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_60 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019244	Metatranscriptome of soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaT ERMLT293_16_1Ra (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019248	Metatranscriptome of soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaT ERMLT660_2_16_1Ra (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019249	Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_32 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019254	Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_5 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019255	Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_60 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019259	Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_100 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019269	Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_5 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019279	Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_30 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019767	Populus adjacent soil microbial communities from riparian zone of Oak Creek, Arizona, USA - 239 T	Environmental	Open in IMG/M
3300019789	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300020065	Metatranscriptome of soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaT ERMLT499_16_1Ra (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300020066	Metatranscriptome of soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaT ERMLIBT45_16_1Ra (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300020067	Metatranscriptome of soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaT ERMLIBT47_16_1Ra (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300027722	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 19-21cm March2015 (SPAdes)	Environmental	Open in IMG/M
3300027743	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (6) Depth 19-21cm September2015 (SPAdes)	Environmental	Open in IMG/M
3300027909	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5 (SPAdes)	Host-Associated	Open in IMG/M
3300030006	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT152D67	Environmental	Open in IMG/M
3300030552	Metatranscriptome of soil fungal communities from truffle orchard in Rollainville, France - Db7 (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300030563	Metatranscriptome of soil fungal communities from truffle orchard in Rollainville, France - Dnb6 (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300030571	Metatranscriptome of soil fungal communities from truffle orchard in Rollainville, France - Dnb5 (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300030574	Metatranscriptome of soil fungal communities from truffle orchard in Rollainville, France - Db1 (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300030592	Metatranscriptome of soil fungal communities from truffle orchard in Rollainville, France - Ab1 (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300030619	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT150D86 (Novaseq)	Environmental	Open in IMG/M
3300030621	Metatranscriptome of soil fungal communities from truffle orchard in Rollainville, France - Db8 (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300030634	Metatranscriptome of soil fungal communities from truffle orchard in Rollainville, France - Cb1 (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300030829	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_357 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030830	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_368 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030831	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_141 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030902	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_356 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030903	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_369 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030987	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_144 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030993	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_185 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031058	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_184 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031081	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_159 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031092	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_367 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031094	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_203 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031124	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_140 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031125	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_153 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031901	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2	Host-Associated	Open in IMG/M
3300033417	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT142D155	Environmental	Open in IMG/M
3300034643	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_120 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300034659	Metatranscriptome of lab incibated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60R1 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300034680	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_116 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
ICChiseqgaiiDRAFT_16330992	3300000033	Soil	RQEASTTTGSATTPAEIGENVGRMRAGVSGLAIWKGLSMKRMVKPAEESVTRGPLPEQVPHVRVRCKEEFSADELALLQAKLEGWIRAVSTKSDSKRPRHQFVMKSKNTGRV*
ICChiseqgaiiDRAFT_20074662	3300000033	Soil	MKRMLKPAEESTAGGPVPGQVPHVRVRCKEEFSADELALLQAKLEAWMRTVATKSESKRPRHQFVMKAKNAGRV*
F14TC_1033261962	3300000559	Soil	MKRILKPAEESTTRGPVQGQVPHVRVRCKEEFSADELALLQAKLEGWMRAVATKSESKRPRHQFVMKAKNAGRV*
JGI10216J12902_1104559482	3300000956	Soil	MKRMVKPAEEAASGGPVQGQVPHVRVRCKEEFSADELALLQAKLEGWMRTVATKSEGKRPRHQFVMKAKNAGRM*
JGI25407J50210_100203143	3300003373	Tabebuia Heterophylla Rhizosphere	MKRMVKPVDESATGGPIQGQMPHVRVRCKEEFSADELALLQAKLEGWMRAVASKSENKRPRHQFVMKAKNAGRV*
Ga0063356_1011658833	3300004463	Arabidopsis Thaliana Rhizosphere	MRAGGGGPAIWKGLCMKRMVKPAEESATRGPMQEQVPHVRVRCKEEFSADELALLQAKLEGWMRAVATKSDSKRPRHQFVMKSKNTGRV*
Ga0070697_1008697622	3300005536	Corn, Switchgrass And Miscanthus Rhizosphere	MKRMLKPAEESTTGGPVQGQVPHVRVRCKEEFSADELALLQAKLEAWMRAVATKSESKRPRHQFVMRAKNAGRV*
Ga0081455_107541331	3300005937	Tabebuia Heterophylla Rhizosphere	RRECLMKRMLKPAEESTTGGPVQGQVPHVRVRCKEEFSADELALLQAKLEGWMRAVATKSESKRPRHQFVMKTKNAGRV*
Ga0081538_100115645	3300005981	Tabebuia Heterophylla Rhizosphere	MLWPYGRDCFMKRMVKPADESATRAPTQGQLPHVRVRCKEDFTADELALLQAKLEGWMRAVATKSESKRPRHQFVMKSKPAGRVCPPIHVIAP*
Ga0081538_100154002	3300005981	Tabebuia Heterophylla Rhizosphere	MKRMVKPVEESATRGPALEQMPHVRVRCKEEFTADELALLQAKLEGWIRAVATKSESKRPRHQFVMKSKNTGRA*
Ga0081538_100298332	3300005981	Tabebuia Heterophylla Rhizosphere	MKRMVKPVQESATRGPAQEQMPHVRVRCKEEFTADELALLQAKLEGWIRAVATKSEGKRPRHQFVMKSKHTGRA*
Ga0081538_102382981	3300005981	Tabebuia Heterophylla Rhizosphere	MNAGRDGLAIRKGMFMKRMVKPTEESSTRGPAQEQMPHVRVRCKEEFTADELALLQAKLEGWIRAVAT
Ga0081538_103011602	3300005981	Tabebuia Heterophylla Rhizosphere	MKRMLNPAEDTTTSGPVQGQVPHVRVRCKEEFSADELALLQAKLEGWMRAGATKAESKRPRHQFVMK
Ga0075428_1014063101	3300006844	Populus Rhizosphere	MKRMVKPAEESATRGPMPEQVPHVRVRCKEEFSADELALLQAKLEGWIRAVSTKSDSKRPRHQFVMKSKNTGRV*
Ga0075421_1000481612	3300006845	Populus Rhizosphere	MKRMVKPAEESATRGAMQEHVPHVRVRCKEEFSADELALIQAKLEGWIRAVSTKSDNKRPRHQFVMKSKHTGRV*
Ga0075421_1001824215	3300006845	Populus Rhizosphere	MKRMVKPAEESATRGPMQEQVPHVRVRCKEEFSADELALLQAKLEGWMRAVATKSDSKRPRHQFVMKSKNTGRV*
Ga0075430_1007907392	3300006846	Populus Rhizosphere	MRAGVGGLAIGKGICMKRMVKPAEESATRGAMQEHVPHVRVRCKEEFSADELALIQAKLEGWIRAVSTKSDNKRPRHQFVMKSKHTGRV*
Ga0075430_1014048771	3300006846	Populus Rhizosphere	ESATRGPMPEQVPHVRVRCKEEFSADELALLQAKLEGWIRAVSTKSDSKRPRHQFVMKSKNTGRV*
Ga0075431_1012433311	3300006847	Populus Rhizosphere	QEASTTTGGATTSPEIGENVRRIRAGVGGLAIWKGLCMKRMVKPAEESATRGPMQEQVPHVRVRCKEEFSADELALLQAKLEGWMRAVATKSDSKRPRHQFVMKSKNTGRV*
Ga0075420_1005163282	3300006853	Populus Rhizosphere	MRAGVSSLAIWKGLSMKRMVKPAEESVTRGPLPEQVPHVRVRCKEEFSADELALLQVKLEGWIRAVVTKSDNKRPRHQFVMKSKNPGRV*
Ga0079218_116577433	3300007004	Agricultural Soil	MKRMLKPAEESTTGGPVQGQVPHVRVRCKEEFSADELALLQAKLEAWMRAVATKSESKRPRHQFVMK
Ga0105098_108058722	3300009081	Freshwater Sediment	GREFSMKRMVKPAEEPVSRGPAQEQVPHVRVRCKEEFTADELALLQAKLEGWMRAVATKSENKRPRHQFVMKSKHTGRV*
Ga0075418_107664322	3300009100	Populus Rhizosphere	TAGGATTPPEIGEIVRRIRAGVGGLAIWKGLCMKRMVKPAEESATRGPMPEQVPHVRVRCKEEFSADELALLQAKLEGWIRAVSTKSDSKRPRHQFVMKSKNTGRV*
Ga0105091_102852022	3300009146	Freshwater Sediment	MKRMLKPVEESTTGGPVQGQVPHVRVRCKEEFSDDELALLQAKLEGWMRTVATKSEGKRPRHQFVMKAKNAGHL*
Ga0111538_124694491	3300009156	Populus Rhizosphere	KPAEESATRGPMPEQVPHVRVRCKEEFSADELALLQAKLEGWIRAVSTKSDSKRPRHQFVMKSKNTGRV*
Ga0105092_100598583	3300009157	Freshwater Sediment	MKRMVKPAEEPVSRGPAQEQVPHVRVRCKEEFTADELALLQAKLEGWMRAVATKSENKRPRHQFVMKSKHTGRV*
Ga0105104_1000098116	3300009168	Freshwater Sediment	MKHMLKPAEESTTGGPVQGQVPHVRVRCKEEFSADELALLQAKLEGWMRAVATKSEGKRPRHQFVMKAKNAGRV*
Ga0105058_11774441	3300009837	Groundwater Sand	MKHMLKPAEESTTGGPVQGQVPHVRVRCKEEFSADELALLQAKLEGWMRAVATKSESKRPRHQFVMKAKNAGRV*
Ga0126315_108756032	3300010038	Serpentine Soil	MKRMLKPAEASTIGGPVQGQVSHVRVRCKEEFSADELALLQAKLEAWMRAVATKSESKRPRHQFVMKAKNAGRV*
Ga0126312_102241372	3300010041	Serpentine Soil	MKRMLKPAEESTTAGPVQGQVPHVRVRCKEEFSADELALLQAKLEAWMRTVATKSESKRPRHQFVMKAKNAGRV*
Ga0126314_103776832	3300010042	Serpentine Soil	MKRMLKPAEESTIGGPVQGQVSHVRVRCKEEFSADELALLQAKLEAWMRAVATKSESKRPRHQFVMKAKNAGRV*
Ga0126380_102673632	3300010043	Tropical Forest Soil	MKRMLKPAEESATGGPVQGQVPHVRVRCKEEFSADELALLQAKLEGWMRAVATKSESKRPRHQFVMKAKNAGRV*
Ga0126384_124476191	3300010046	Tropical Forest Soil	YGRECFMKRMVKPAEESVTGGPGQGQVPQVRVRCKEEFTADELALLQAKLEGWMRAVATKSESKRPRHQFVMKTKNAGRV*
Ga0127440_10096031	3300010100	Grasslands Soil	LKPAEESTTGGPVQGQVPHVRVRCKEEFSADELALLQAKLEAWMRAVATKSESKRPRHQFVMKAKNAGRV*
Ga0126323_11934272	3300010137	Soil	MKRMVKPAEESATRGPMQEQVPHVRVRCKEEFSADELALLQAKLEGWMRAVATKSDNKRPRHQFVMKSKNTGRV*
Ga0126321_10991142	3300010145	Soil	MKRMLKPAEESTTGGPVQGQVPHVRVRCKEEFSADELALLQAKLEGWMRAVATKSESKRPRHQFVMKTKNAGRV*
Ga0126321_11532244	3300010145	Soil	MSAGFGGLAVRKEMCMKRMVKPAEESETRGPVPEQVPHVRVRCKEEFSADELALLQAKLEGWMRAVATKSDSKRPRHQFVMKSKNTGRV*
Ga0126321_14723902	3300010145	Soil	MKRMLKPAEESTTAGPVQGQVPHVRVRCKEEFSADELALLQVKLEAWMRAVATKSESKRPRHQFVMKAKNAGRV*
Ga0127502_100396542	3300011333	Soil	MRAGVGGLAIWKGLSMKRMVKPAEESATRGPMQEQVPHVRVRCKEEFSADELALLQAKLEGWIRAVATKSDSKRPRHQFVMKSKNTGRV*
Ga0150985_1003668292	3300012212	Avena Fatua Rhizosphere	MKRMLKPAEESTTGGPVQGQVPHVRVRCKEEFSADELALLQAKLEAWMRAVATKSESKRPRHQFVMKAKNAGRV*
Ga0150985_1057501703	3300012212	Avena Fatua Rhizosphere	MKRMVKPAEEAATGGPVQGQVPHVRVRCKEEFSADELALLQAKLEGWMRTVATKSEGKRPRHQFVMKAKNAGRM*
Ga0137375_105723622	3300012360	Vadose Zone Soil	MKRMLKPAEESTTAGPVQGQVPHVRVRCKEEFSADELALLQAKLEAWMRAVATKSESKRPRHQFVMKAKNAGRV*
Ga0137397_109526891	3300012685	Vadose Zone Soil	MKHMLKPAEESTPGGPVQGQVPHVRVRCKEEFSADELALLQAKLEGWMRAVATKSESKRPRHQFVMKAKNAGRV*
Ga0137394_100300456	3300012922	Vadose Zone Soil	MKRMLKPAEESTTEGPVQGQVPHVRVRCKEEFSADELALLQAKLEAWMRAVATKSESKRPRHQFVMRAKNAGRV*
Ga0137404_102017282	3300012929	Vadose Zone Soil	MKRMLKPAEESTTEGPVQGQVPHVRVRCKEEFSADELALLQAKLEAWMRAVATKSESKRPRHQFVMKAKNAGRL*
Ga0137407_104172813	3300012930	Vadose Zone Soil	LKPAEESTTEGPVQGQVPHVRVRCKEEFSADELALLQAKLEAWMRAVATKSESKRPRHQFVMKAKNAGRL*
Ga0184610_10208564	3300017997	Groundwater Sediment	MRAGVGGLAIGKGRCMKRMVKPAEESATRGPMPEQVPHVRVRCKEEFSADELALLQAKLEGWIRAVATKSDSKRPRHQFVMKSKNTGRV
Ga0184609_100175954	3300018076	Groundwater Sediment	MKRMVKPAEESATRGPMPEQVPHVRVRCKEEFSADELALLQAKLEGWIRAVATKSDSKRPRHQFVMKSKNTGRV
Ga0190265_107910522	3300018422	Soil	MRAGVGDLAIWKGMCMKRMVKPAEESATRGPMHEQVPHVRVRCKEEFSADELALIQTKLEGWIRAVATKSDSKRPRHQFVMKSKNTGRA
Ga0190268_100878103	3300018466	Soil	MKRMLKPAEESTTGGPVQGQVPHVRVRCKEEFSADELALLQAKLEAWMRAVATKSESKRPRHQFVMKAKNAGRV
Ga0180119_13439503	3300019228	Groundwater Sediment	MKRMLKPADESSTGGPVPGQVPHVRVRCKEEFSADELALLQAKLEGWMRTVATKSEGKRPRHQFVMKAKNAGRL
Ga0180116_11293452	3300019229	Groundwater Sediment	MKRMLKPADDAMTAGSLPGQVPHVRVRCKEEFSADELALLQAKLEGWMRTVATKSEGKRPRHQFVMKAKNAGRV
Ga0180116_11326952	3300019229	Groundwater Sediment	MKRMLKPVEESTTKGPVQGQVPHVRVRCKEEFSADELALLQAKLEGWMRTVATKSEGKRPRHQFVMKAKNAGRVQPPIGVIAP
Ga0180116_11676401	3300019229	Groundwater Sediment	MRARVGGLAIGKGRCMKRMVKPAEESATRGPMPEQVPHVRVRCKEEFSADELALLQAKLEGWIRAVATKSDSKRPRHQFVMKSKNTGRV
Ga0180116_12740812	3300019229	Groundwater Sediment	MKRMLKPADESSTEGPVPGQVPHVRVRCKEEFSADELALLQAKLEGWMRTVATKSGGKRPRHQFVMKAKNAGHL
Ga0184645_12426841	3300019233	Groundwater Sediment	MRAGVGGLAIWKGRCMKRMVKPAEESVTRGPMQEQVPHVRVRCKEEFSADELALLQAKLEGWIRAVATKSDSKRPRHQFVMKSKNTGRV
Ga0184645_13156973	3300019233	Groundwater Sediment	MKHMLKPAEESTTGGPVQGQVPHVRVRCKEEFSADELALLQAKLEGWMRAVATKSESKRPRHQFVMKAKNAGRV
Ga0180111_14432451	3300019244	Groundwater Sediment	AGAGGLAIGKGRCMKRMVKPAEESATRGPMPEQVPHVRVRCKEEFSADELALLQAKLEGWIRAVATKSDSKRPRHQFVMKSKNTGRV
Ga0180117_11063582	3300019248	Groundwater Sediment	MKRMLKPAEESTTGGPPQGQVPHVRVRCKEEFSADELALLQAKLEGWMRTVATKSEGKRPRHQFVMRAKNAGRV
Ga0180117_11446593	3300019248	Groundwater Sediment	MKRMLKPADDAMTAGSLPGQVPHVRVRCKEEFSVDELALLQAKLEGWMRTVATKSEGKRPRHQFVMKAKNAGRV
Ga0184648_12166303	3300019249	Groundwater Sediment	MVKPAEESATRGPMPEQVPHVRVRCKEEFSADELALLQAKLEGWIRAVATKSDSKRPRHQFVMKSKNTGRV
Ga0184648_12407443	3300019249	Groundwater Sediment	MKRMLKPAEESPTGGPIQAQVPHVRVRCKEEFSADELALLQAKLEGWMRAGATKSDSKRPRHQFVMKAKNAGRV
Ga0184648_13151681	3300019249	Groundwater Sediment	MRAGVGGLAIWKGRCMKRMVKPAEESATRGAMPEQVPHVRVRCKEEFSADELALLQAKLEGWIRAVATKSDSKRPRHQFVMKSKNTGRV
Ga0184648_13770882	3300019249	Groundwater Sediment	MKRMLKPAEESTTGGPLQGQVPHVRVRCKEEFSADELALLQAKLEGWMRTVATKSEGKRPRHQFVMKAKNAGRM
Ga0184641_11115482	3300019254	Groundwater Sediment	MKRMLKPAEESTTGGPVQGQVPHVRVRCKEEFSADELALLQAKLEAWMRAVATKSESKRPRRQFVMKAKNAGRV
Ga0184641_11172412	3300019254	Groundwater Sediment	MRAGGGGLAIWKGICMKRMVKPAEELATRGPMPEQVPHVRVRCKEEFSADELALLQAKLEGWIRAVATKSDSKRPRHQFVMKSKNTGRA
Ga0184641_12266982	3300019254	Groundwater Sediment	GREDLMKRMLKPVEEPPTGGPVQGQVPHVRVRCKEEFSADELALLQAKLEGWMRTAATKTEGKRPRHQFVMKAKNAGRV
Ga0184643_10441463	3300019255	Groundwater Sediment	MRAWVGGLALGKGRCMKRMVKPAEESATRGPMPEQVPHVRVRCKEEFSADELALLQAKLEGWIRAVATKSDSKRPRHQFVMKSKNTGRV
Ga0184643_11359163	3300019255	Groundwater Sediment	MRAGVGGLAIWKGMCMKRMVKPAEELATRGPMPEQVPHVRVRCKEEFSADELALLQAKLEGWIRAVATKSDSKRPRHQFVMKSKNTGRA
Ga0184646_10030651	3300019259	Groundwater Sediment	MRAGVGGLAIWKGRCMKRMVKPAEESATRGPMQEQVPHVRVRCKEEFSADELALLQAKLEGWIRAVATKSDSKRPRHQFVMKSKNTGRV
Ga0184646_12180162	3300019259	Groundwater Sediment	MKRMLKPVEEPPTGGPVQGQVPHVRVRCKEEFSADELALLQAKLEGWMRTAATKTEGKRPRHQFVMKAKNAGRV
Ga0184646_13122902	3300019259	Groundwater Sediment	MKRMVKPAEELATRGPMPEQVPHVRVRCKEEFSADELALLQAKLEGWIRAVATKSDSKRPRHQFVMKSKNTGRA
Ga0184646_14098692	3300019259	Groundwater Sediment	MKRMVKPADETATGGPVPGQGPHVRVRCKEEFSADELALLQAKLEGWMRAVATKSGGKRPRHQFVMKAKNAGRV
Ga0184644_17893421	3300019269	Groundwater Sediment	MKHMLKPAEESTTGGPVQGQVPHVRVRCKEEFSADELALLQAKLEAWMRAVATKSESKRPRHQFVMKAKNAGRV
Ga0184642_10522253	3300019279	Groundwater Sediment	MCMKRMVKPAEELATRGPMPEQVPHVRVRCKEEFSADELALLQAKLEGWIRAVATKSDSKRPRHQFVMKSKNTGRA
Ga0184642_13122922	3300019279	Groundwater Sediment	MKRMLKPAEESTTGGPVQGQVPHVRVRCKEEFSADELALLQAKLEGWMRAGATKSDGKRPRHQFVMKAKNAGRV
Ga0190267_108299892	3300019767	Soil	MKHMLKPAEESTTGGPVQGQVPHVRVRCKEEFSADELALLQAKLEGWMRAVATKSESKRPRHQFVMKTKNAGRV
Ga0137408_10489353	3300019789	Vadose Zone Soil	MKRILKPAEESTTEGPVQVQVPHVRVRCKEEFSADELALLQAKLEAWMRAVATKSESKRPRHQFVMKAKNAGRL
Ga0180113_13964282	3300020065	Groundwater Sediment	MKRMLKPADESSTEGPVPGQVPHVRVRCKEEFSADELALLQAKLEGWMRTVAAKSGGKRPRHQFVMKAKNAGHM
Ga0180108_12425673	3300020066	Groundwater Sediment	MKRMLKPAEESPSGGPIQGQVPHVRVRCKEEFSADELALLQAKLEGWMRAGATKSDGKRPRHQFVMKAKNAGRM
Ga0180109_12515511	3300020067	Groundwater Sediment	MKRMLKPADESSTEGPVPWQVPHVRVRCKEEFSAEERALLQAKLEGWMRTVATKSGGKRPRHQFVMKAKNAGHL
Ga0209819_101744762	3300027722	Freshwater Sediment	MKRMVKPAEEPVSRGPAQEQVPHVRVRCKEEFTADELALLQAKLEGWMRAVATKSENKRPRHQFVMKSKHTGRV
Ga0209593_100029056	3300027743	Freshwater Sediment	MKHMLKPAEESTTGGPVQGQVPHVRVRCKEEFSADELALLQAKLEGWMRAVATKSEGKRPRHQFVMKAKNAGRV
Ga0209382_100431877	3300027909	Populus Rhizosphere	MKRMVKPAEESATRGAMQEHVPHVRVRCKEEFSADELALIQAKLEGWIRAVSTKSDNKRPRHQFVMKSKHTGRV
Ga0299907_108685542	3300030006	Soil	GRDGFMKHMVKPIDESATHGPTQGQLPHVRVRCKEDFTADELALLQAKLEGWMRTVATKSEGKRSRHQFVMKSKPAGRL
Ga0299907_109023862	3300030006	Soil	VKPTDESATHGPTQGQLPHVRVRCKEDFTADELALLQAKLEGWMRAVATKSDGKRPRHQFVMKSKPAGRV
Ga0247654_11532962	3300030552	Soil	LKPADESNTGGPVPGQVPHVRVRCKEEFSADELALLQAKLEGWMRTVATKSEGKRPRHQFVMKAKNAGHL
Ga0247653_10557532	3300030563	Soil	MKHMLKPAEESTTGGPVQGQVPHVRVRCKEEFSADELALLQAKLEGWMRAGATKAESKRPRHQFVMKAKNAGRV
Ga0247652_10013102	3300030571	Soil	MKRMLKPAEDTTTGGPVQGQVPHVRVRCKEEFSADELALLQAKLEGWMRTGSTKAESKRPRHQFVMKAKNAGRV
Ga0247648_10087401	3300030574	Soil	MKRMLKPAEDTTTGGPVQGQVPHVRVRCKEEFSADELALLQAKLEGWMRAGATKAESKRPRHQFVMKTKNAGRV
Ga0247612_11638351	3300030592	Soil	MKRMLKPADESSTGGPVPGQVPHVRVRCKEEFSADELALLQAKLEGWMRTVATKSEGKRPRHQFVMKAKNAGHL
Ga0247612_12159521	3300030592	Soil	MKRMLKPAEDTTTGGPVQGQVPHVRVRCKEEFSADELALLQAKLEGWMRAVATKSESKRPRHQFVMKAKNAGRV
Ga0268386_102091372	3300030619	Soil	MKRMVKPTDESATHGPTQGQLPHVRVRCKEDFTADELALLQAKLEGWMRAVATKSDGKRPRHQFVMKSKPAGRV
Ga0247655_100304831	3300030621	Soil	RVWSHGREGSMKRMLKPAEDTTTGGPVQGQVPHVRVRCKEEFSADELALLQAKLEGWMRAGSTKAESKRPRHQFVMKAKNAGRV
Ga0247636_100682182	3300030634	Soil	PAEIRKAGSRMNARARVWSHGREGFMKRMLKPAEDTTTGGPVQGQVPHVRVRCKEEFSADELALLQAKLEGWMRAGATKAESKRPRHQFVMKAKNAGRV
Ga0308203_10020432	3300030829	Soil	MRAGVGGLAIGKGRCMKRMVKPAEESATRGAMPEQVPHVRVRCKEEFSADELALLQAKLEGWIRAVATKSDSKRPRHQFVMKSKNTGRV
Ga0308205_10002291	3300030830	Soil	MKRMLKPAEESTTGGPVQGQVPHVRVRCKEEFSADELALLQAKLEAWMRAVATKSENKRPRHQFVMKAKNAGRV
Ga0308205_10158931	3300030830	Soil	SYRRECLMKRMLKPAEESTTGGPVQGQVPHVRVRCKEEFSADELALLQAKLEGWMRTAATKTEGKRPRHQFVMKAKNAGRV
Ga0308205_10482062	3300030830	Soil	CMKRMVKPAEESATRGAMPEQVPHVRVRCKEEFSADELALLQAKLEGWIRAVATKSDSKRPRHQFVMKSKNTGRV
Ga0308152_1013792	3300030831	Soil	MRAGDGGLAIWKGMCMKRMVKPAEESATRGPMPEQVPHVRVRCKEEFSADELALLQAKLEGWIRAVATKSDSKRPRHQFVMKSKNTGRV
Ga0308202_10078044	3300030902	Soil	MKRMVKPAEESATRGAMPEQVPHVRVRCKEEFSADELALLQAKLEGWIRAVATKSDSKRPRHQFVMKSKNTGRV
Ga0308202_11616221	3300030902	Soil	MRAGGGGLAIWKGICMKRMVKPAEELATHGPMPEQVPHVRVRCKEEFSADELALLQAKLEGWIRAVATKSDSKRPRHQFVMKSKNTGRA
Ga0308206_10338281	3300030903	Soil	TTGGATTPAEIGENVSRMRAGVGGLAIWKGRCMKRMVKPAEESATRGAMPEQVPHVRVRCKEEFSADELALLQAKLEGWIRAVATKSDSKRPRHQFVMKSKNTGRV
Ga0308155_10237512	3300030987	Soil	CMKRMVKPAEELATRGPMPEQVPHVRVRCKEEFSADELALLQAKLEGWIRAVATKSDSKRPRHQFVMKSKNTGRA
Ga0308190_10131862	3300030993	Soil	MRAGVGGLAIGKGRCMKRMVKPAEESATRGPMPEQVPHVRVRGKEEFSADELALLQAKLEGWIRAVATKSDSKRPRHQFVMKSKNTGRV
Ga0308189_104261992	3300031058	Soil	EIGENVSRMRAGVGGLAIWKGMCMKRMVKPAEELATRGPMPEQVPHVRVRCKEEFSADELALLQAKLEGWIRAVATKSDSKRPRHQFVMKSKNTGRA
Ga0308185_10258221	3300031081	Soil	MRAGVGGLAIWKGMCMKRMVKPAEELATRGPMPEQVPHVRVRCKEEFSADELALLQAKLEGWIRAVATKSDSKRPRHQF
Ga0308204_100359811	3300031092	Soil	IWKGRCMKRMVKPAEESATRGPMPEQVPHVRVRCKEEFSADELALLQAKLEGWIRAVATKSDSKRPRHQFVMKSKNTGRV
Ga0308204_100434804	3300031092	Soil	MKRMVKPAEESATRGPMPEEVPHVRVRCKDEFSADELALLQAKLEGWIRAVSTKSDSKRPRHQFVMKSKNTGRV
Ga0308199_11334691	3300031094	Soil	LAIGKGRCMKRMVKPAEESATRGPMPEQVPHVRVRCKEEFSADELALLQAKLEGWIRAVATKSDSKRPRHQFVMKSKNTGRV
Ga0308151_10415502	3300031124	Soil	MKRMLKPAEESPTGGPIQGQVPHVRVRCKEEFSADELALLQAKLEAWMRAVATKSENKRPRHQFVMKAKNAGRV
Ga0308182_10156592	3300031125	Soil	MRAGVGGLAIWKGMCMKHMVKPAEESATRGPMPEQVPHVRVRCKEEFSADELALLQAKLEGWIRAVATKSDSKRPRHQFVMKSKNTGRV
Ga0307406_100125082	3300031901	Rhizosphere	MSAGFGGLAVRKGMCMKRMVKPAEESETRGPVPEQVPHVRVRCKEEFSADELALLQAKLEGWMRAVATKSDSKRPRHQFVMKSKNTGRV
Ga0307406_112214022	3300031901	Rhizosphere	MKRMLKPAEESTIGGPVQGQVSHVRVRCKEEFSADELALLQAKLEAWMRAVATKSESKRPRHQFVMKAKNAGRV
Ga0214471_103803761	3300033417	Soil	MRAGVGGLAIWKGRCMKRMVKPAEESATRGPMPEQVPHVRVRCKEEFSADELALLQAKLEGWIRAVATKSDSKRPRHQFVMKSKNTGRV
Ga0370545_037647_280_504	3300034643	Soil	MKRMLKPVEESPAGGPVQGQVPHVRVRCKEEFSADELALLQAKLEGWMRTVATKSEGKRPRHQFVMRAKNAGRV
Ga0314780_169237_253_477	3300034659	Soil	MKRMLKPADESSTGGPVPGQVPHVRVRCKEEFSADELALLQAKLEGWMRTVAAKSGGKRPRHQFVMKAKNAGHL
Ga0370541_000882_993_1217	3300034680	Soil	MKRMLKPAEESTTAGPVQGQVPHVRVRCKEEFSADELALLQAKLEAWMRAVATKSESKRPRHQFVMKAKNAGRV

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F075815

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Hidden Markov Model


Click on a Sequence Logo column to get its information.
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