Metagenome / Metatranscriptome Family F075550

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F075550
Family Type	Metagenome / Metatranscriptome
Number of Sequences	118
Average Sequence Length	49 residues
Representative Sequence	ALTASIDAALAAEQYASAHGLSIRFGSEDLRAMALSLFIQHARDGGVR
Number of Associated Samples	90
Number of Associated Scaffolds	118

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	7.63 %
% of genes near scaffold ends (potentially truncated)	91.53 %
% of genes from short scaffolds (< 2000 bps)	90.68 %
Associated GOLD sequencing projects	81
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.48

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (58.475 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (24.576 % of family members)
Environment Ontology (ENVO)	Unclassified (41.525 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (61.864 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 43.42% β-sheet: 0.00% Coil/Unstructured: 56.58%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.48
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.48
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 118 Family Scaffolds
PF12705	PDDEXK_1	56.78
PF02604	PhdYeFM_antitox	4.24
PF01850	PIN	2.54
PF05016	ParE_toxin	1.69
PF00106	adh_short	0.85
PF08843	AbiEii	0.85
PF02417	Chromate_transp	0.85
PF01979	Amidohydro_1	0.85
PF13814	Replic_Relax	0.85
PF00589	Phage_integrase	0.85
PF11453	DUF2950	0.85

COG ID	Name	Functional Category	% Frequency in 118 Family Scaffolds
COG2161	Antitoxin component YafN of the YafNO toxin-antitoxin module, PHD/YefM family	Defense mechanisms [V]	4.24
COG4118	Antitoxin component of toxin-antitoxin stability system, DNA-binding transcriptional repressor	Defense mechanisms [V]	4.24
COG2059	Chromate transport protein ChrA	Inorganic ion transport and metabolism [P]	0.85
COG2253	Predicted nucleotidyltransferase component of viral defense system	Defense mechanisms [V]	0.85

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	59.32 %
Unclassified	root	N/A	40.68 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	58.47 %
Unclassified	root	N/A	40.68 %
Viruses	superkingdom	All Organisms → Viruses	0.85 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	58.47 %
Unclassified	root	N/A	40.68 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	40.68 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	22.03 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	5.93 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	5.08 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	4.24 %
Nitrospirae	phylum	All Organisms → cellular organisms → Bacteria → Nitrospirae	1.69 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	40.68 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	11.02 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	5.93 %
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	5.08 %
Firmicutes	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	4.24 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2.54 %
unclassified Nitrospirae	no rank	All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae	1.69 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	1.69 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.85 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	40.68 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	11.02 %
Bryobacterales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales	5.93 %
Opitutae	class	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae	5.08 %
Firmicutes sensu stricto incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Firmicutes sensu stricto incertae sedis	4.24 %
Nitrospirae bacterium	species	All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae → Nitrospirae bacterium	1.69 %
unclassified Chloroflexi	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi	1.69 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	1.69 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.85 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.85 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	40.68 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	11.02 %
Solibacteraceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae	5.93 %
Puniceicoccales	order	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Puniceicoccales	5.08 %
Hydrogenispora	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Firmicutes sensu stricto incertae sedis → Hydrogenispora	4.24 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1.69 %
Azospirillaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Azospirillaceae	1.69 %
Nitrospirae bacterium	species	All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae → Nitrospirae bacterium	1.69 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.85 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.85 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	40.68 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	11.02 %
Candidatus Sulfopaludibacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter	5.93 %
Puniceicoccaceae	family	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Puniceicoccales → Puniceicoccaceae	5.08 %
Hydrogenispora ethanolica	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Firmicutes sensu stricto incertae sedis → Hydrogenispora → Hydrogenispora ethanolica	4.24 %
Nitrospirillum	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Azospirillaceae → Nitrospirillum	1.69 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1.69 %
Nitrospirae bacterium	species	All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae → Nitrospirae bacterium	1.69 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.85 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.85 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	40.68 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	11.02 %
unclassified Candidatus Sulfopaludibacter	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter → unclassified Candidatus Sulfopaludibacter	5.93 %
Oceanipulchritudo	genus	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Puniceicoccales → Puniceicoccaceae → Oceanipulchritudo	5.08 %
Hydrogenispora ethanolica	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Firmicutes sensu stricto incertae sedis → Hydrogenispora → Hydrogenispora ethanolica	4.24 %
Nitrospirillum amazonense	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Azospirillaceae → Nitrospirillum → Nitrospirillum amazonense	1.69 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1.69 %
Nitrospirae bacterium	species	All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae → Nitrospirae bacterium	1.69 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.85 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.85 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	40.68 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	11.02 %
Candidatus Sulfopaludibacter sp. SbA4	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter → unclassified Candidatus Sulfopaludibacter → Candidatus Sulfopaludibacter sp. SbA4	5.93 %
Oceanipulchritudo coccoides	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Puniceicoccales → Puniceicoccaceae → Oceanipulchritudo → Oceanipulchritudo coccoides	5.08 %
Hydrogenispora ethanolica	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Firmicutes sensu stricto incertae sedis → Hydrogenispora → Hydrogenispora ethanolica	4.24 %
Nitrospirillum amazonense	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Azospirillaceae → Nitrospirillum → Nitrospirillum amazonense	1.69 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1.69 %
Nitrospirae bacterium	species	All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae → Nitrospirae bacterium	1.69 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.85 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.85 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.85 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300004080\|Ga0062385_10303170	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter → unclassified Candidatus Sulfopaludibacter → Candidatus Sulfopaludibacter sp. SbA4	916	Open in IMG/M
3300004152\|Ga0062386_100583172	All Organisms → cellular organisms → Bacteria	913	Open in IMG/M
3300004152\|Ga0062386_100880194	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Puniceicoccales → Puniceicoccaceae → Oceanipulchritudo → Oceanipulchritudo coccoides	740	Open in IMG/M
3300004152\|Ga0062386_101868141	Not Available	501	Open in IMG/M
3300005764\|Ga0066903_107050390	Not Available	583	Open in IMG/M
3300006052\|Ga0075029_100039066	All Organisms → cellular organisms → Bacteria	2719	Open in IMG/M
3300009792\|Ga0126374_10745164	Not Available	742	Open in IMG/M
3300010048\|Ga0126373_10156964	All Organisms → cellular organisms → Bacteria	2168	Open in IMG/M
3300010048\|Ga0126373_10651126	All Organisms → cellular organisms → Bacteria	1109	Open in IMG/M
3300010339\|Ga0074046_10719325	All Organisms → cellular organisms → Bacteria → Acidobacteria	586	Open in IMG/M
3300010341\|Ga0074045_10036567	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	3651	Open in IMG/M
3300010341\|Ga0074045_10456129	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Puniceicoccales → Puniceicoccaceae → Oceanipulchritudo → Oceanipulchritudo coccoides	825	Open in IMG/M
3300010341\|Ga0074045_10814531	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Puniceicoccales → Puniceicoccaceae → Oceanipulchritudo → Oceanipulchritudo coccoides	590	Open in IMG/M
3300010358\|Ga0126370_10664667	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter → unclassified Candidatus Sulfopaludibacter → Candidatus Sulfopaludibacter sp. SbA4	910	Open in IMG/M
3300010358\|Ga0126370_11408884	All Organisms → cellular organisms → Bacteria	658	Open in IMG/M
3300010358\|Ga0126370_11508735	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	639	Open in IMG/M
3300010361\|Ga0126378_12887245	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Firmicutes sensu stricto incertae sedis → Hydrogenispora → Hydrogenispora ethanolica	548	Open in IMG/M
3300010366\|Ga0126379_10195973	All Organisms → cellular organisms → Bacteria → Acidobacteria	1938	Open in IMG/M
3300010366\|Ga0126379_10816548	Not Available	1032	Open in IMG/M
3300010366\|Ga0126379_13099812	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Firmicutes sensu stricto incertae sedis → Hydrogenispora → Hydrogenispora ethanolica	556	Open in IMG/M
3300010376\|Ga0126381_100399742	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1914	Open in IMG/M
3300010379\|Ga0136449_102043120	Not Available	844	Open in IMG/M
3300010379\|Ga0136449_104357215	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	522	Open in IMG/M
3300010398\|Ga0126383_10772470	Not Available	1043	Open in IMG/M
3300014151\|Ga0181539_1308629	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	579	Open in IMG/M
3300014168\|Ga0181534_10709040	Not Available	588	Open in IMG/M
3300016270\|Ga0182036_10503445	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	960	Open in IMG/M
3300016319\|Ga0182033_10564710	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	985	Open in IMG/M
3300016319\|Ga0182033_12014182	Not Available	526	Open in IMG/M
3300016341\|Ga0182035_10307114	All Organisms → cellular organisms → Bacteria	1303	Open in IMG/M
3300016357\|Ga0182032_10688708	Not Available	857	Open in IMG/M
3300016371\|Ga0182034_10356570	All Organisms → cellular organisms → Bacteria	1189	Open in IMG/M
3300016371\|Ga0182034_10689828	Not Available	867	Open in IMG/M
3300016371\|Ga0182034_10817626	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter → unclassified Candidatus Sulfopaludibacter → Candidatus Sulfopaludibacter sp. SbA4	798	Open in IMG/M
3300016387\|Ga0182040_10352385	Not Available	1142	Open in IMG/M
3300016387\|Ga0182040_11355416	Not Available	601	Open in IMG/M
3300016422\|Ga0182039_10125057	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1947	Open in IMG/M
3300016422\|Ga0182039_10266188	All Organisms → cellular organisms → Bacteria	1404	Open in IMG/M
3300016422\|Ga0182039_10744114	Not Available	867	Open in IMG/M
3300016445\|Ga0182038_10588824	Not Available	959	Open in IMG/M
3300016445\|Ga0182038_11226615	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter → unclassified Candidatus Sulfopaludibacter → Candidatus Sulfopaludibacter sp. SbA4	669	Open in IMG/M
3300017822\|Ga0187802_10160857	All Organisms → cellular organisms → Bacteria	859	Open in IMG/M
3300017930\|Ga0187825_10367764	All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae → Nitrospirae bacterium	547	Open in IMG/M
3300017933\|Ga0187801_10445971	Not Available	542	Open in IMG/M
3300017948\|Ga0187847_10635745	Not Available	598	Open in IMG/M
3300017959\|Ga0187779_10255104	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1111	Open in IMG/M
3300017961\|Ga0187778_10049558	All Organisms → cellular organisms → Bacteria → Acidobacteria	2567	Open in IMG/M
3300017972\|Ga0187781_10366351	All Organisms → cellular organisms → Bacteria	1027	Open in IMG/M
3300017972\|Ga0187781_10617913	Not Available	781	Open in IMG/M
3300017973\|Ga0187780_10003294	All Organisms → cellular organisms → Bacteria	12208	Open in IMG/M
3300018017\|Ga0187872_10408284	Not Available	574	Open in IMG/M
3300018043\|Ga0187887_10615440	Not Available	641	Open in IMG/M
3300018046\|Ga0187851_10128342	All Organisms → cellular organisms → Bacteria	1552	Open in IMG/M
3300018058\|Ga0187766_10831418	Not Available	647	Open in IMG/M
3300018090\|Ga0187770_10830447	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Firmicutes sensu stricto incertae sedis → Hydrogenispora → Hydrogenispora ethanolica	740	Open in IMG/M
3300020580\|Ga0210403_11324534	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	549	Open in IMG/M
3300021407\|Ga0210383_11387259	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	585	Open in IMG/M
3300021560\|Ga0126371_11039059	All Organisms → cellular organisms → Bacteria	960	Open in IMG/M
3300021560\|Ga0126371_11898368	Not Available	715	Open in IMG/M
3300025507\|Ga0208188_1051017	Not Available	1039	Open in IMG/M
3300025527\|Ga0208714_1070556	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Puniceicoccales → Puniceicoccaceae → Oceanipulchritudo → Oceanipulchritudo coccoides	723	Open in IMG/M
3300026927\|Ga0207744_1007262	All Organisms → cellular organisms → Bacteria	1124	Open in IMG/M
3300027783\|Ga0209448_10108115	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	932	Open in IMG/M
3300027824\|Ga0209040_10131630	All Organisms → cellular organisms → Bacteria	1373	Open in IMG/M
3300027824\|Ga0209040_10464356	Not Available	572	Open in IMG/M
3300027825\|Ga0209039_10086469	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1362	Open in IMG/M
3300027911\|Ga0209698_10586244	Not Available	858	Open in IMG/M
3300028652\|Ga0302166_10020738	All Organisms → Viruses → Predicted Viral	1284	Open in IMG/M
3300030002\|Ga0311350_10557768	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1029	Open in IMG/M
3300030847\|Ga0075405_10686094	All Organisms → cellular organisms → Bacteria	501	Open in IMG/M
3300030943\|Ga0311366_11676651	Not Available	543	Open in IMG/M
3300031231\|Ga0170824_113012333	Not Available	727	Open in IMG/M
3300031231\|Ga0170824_119336862	Not Available	1167	Open in IMG/M
3300031474\|Ga0170818_111937447	Not Available	945	Open in IMG/M
3300031521\|Ga0311364_11503331	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Puniceicoccales → Puniceicoccaceae → Oceanipulchritudo → Oceanipulchritudo coccoides	665	Open in IMG/M
3300031543\|Ga0318516_10352292	Not Available	849	Open in IMG/M
3300031668\|Ga0318542_10201425	Not Available	1004	Open in IMG/M
3300031679\|Ga0318561_10180494	All Organisms → cellular organisms → Bacteria → Acidobacteria	1141	Open in IMG/M
3300031679\|Ga0318561_10474439	All Organisms → cellular organisms → Bacteria	689	Open in IMG/M
3300031681\|Ga0318572_10178622	Not Available	1234	Open in IMG/M
3300031719\|Ga0306917_10265635	Not Available	1318	Open in IMG/M
3300031726\|Ga0302321_100174673	All Organisms → cellular organisms → Bacteria	2227	Open in IMG/M
3300031736\|Ga0318501_10230545	Not Available	976	Open in IMG/M
3300031740\|Ga0307468_102502015	All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae → Nitrospirae bacterium	506	Open in IMG/M
3300031747\|Ga0318502_10806771	Not Available	569	Open in IMG/M
3300031768\|Ga0318509_10728011	Not Available	550	Open in IMG/M
3300031771\|Ga0318546_10251558	Not Available	1216	Open in IMG/M
3300031819\|Ga0318568_10756086	Not Available	603	Open in IMG/M
3300031833\|Ga0310917_10305468	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1076	Open in IMG/M
3300031879\|Ga0306919_10365701	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1103	Open in IMG/M
3300031890\|Ga0306925_10055892	All Organisms → cellular organisms → Bacteria → Acidobacteria	4124	Open in IMG/M
3300031890\|Ga0306925_10548748	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Firmicutes sensu stricto incertae sedis → Hydrogenispora → Hydrogenispora ethanolica	1226	Open in IMG/M
3300031890\|Ga0306925_11859378	Not Available	574	Open in IMG/M
3300031893\|Ga0318536_10197183	Not Available	1025	Open in IMG/M
3300031902\|Ga0302322_100882672	All Organisms → cellular organisms → Bacteria	1071	Open in IMG/M
3300031910\|Ga0306923_11501723	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter → unclassified Candidatus Sulfopaludibacter → Candidatus Sulfopaludibacter sp. SbA4	705	Open in IMG/M
3300031912\|Ga0306921_10517986	Not Available	1385	Open in IMG/M
3300031918\|Ga0311367_11246167	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Puniceicoccales → Puniceicoccaceae → Oceanipulchritudo → Oceanipulchritudo coccoides	737	Open in IMG/M
3300031945\|Ga0310913_10704863	Not Available	714	Open in IMG/M
3300031946\|Ga0310910_11053140	All Organisms → cellular organisms → Bacteria	634	Open in IMG/M
3300031947\|Ga0310909_10451832	All Organisms → cellular organisms → Bacteria	1078	Open in IMG/M
3300031954\|Ga0306926_11453613	Not Available	793	Open in IMG/M
3300031965\|Ga0326597_10501700	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1322	Open in IMG/M
3300032039\|Ga0318559_10115149	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Azospirillaceae → Nitrospirillum → Nitrospirillum amazonense	1202	Open in IMG/M
3300032042\|Ga0318545_10089938	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Azospirillaceae → Nitrospirillum → Nitrospirillum amazonense	1069	Open in IMG/M
3300032059\|Ga0318533_10028751	All Organisms → cellular organisms → Bacteria	3585	Open in IMG/M
3300032067\|Ga0318524_10454971	Not Available	670	Open in IMG/M
3300032076\|Ga0306924_10015782	All Organisms → cellular organisms → Bacteria	7897	Open in IMG/M
3300032076\|Ga0306924_10192317	All Organisms → cellular organisms → Bacteria → Acidobacteria	2343	Open in IMG/M
3300032076\|Ga0306924_10455368	Not Available	1461	Open in IMG/M
3300032076\|Ga0306924_11025398	Not Available	904	Open in IMG/M
3300032076\|Ga0306924_11397074	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Firmicutes sensu stricto incertae sedis → Hydrogenispora → Hydrogenispora ethanolica	747	Open in IMG/M
3300032261\|Ga0306920_104435930	Not Available	502	Open in IMG/M
3300032783\|Ga0335079_10468757	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter → unclassified Candidatus Sulfopaludibacter → Candidatus Sulfopaludibacter sp. SbA4	1348	Open in IMG/M
3300032805\|Ga0335078_10155141	Not Available	3233	Open in IMG/M
3300032829\|Ga0335070_11123757	Not Available	722	Open in IMG/M
3300033289\|Ga0310914_10507946	All Organisms → cellular organisms → Bacteria → Proteobacteria	1090	Open in IMG/M
3300033417\|Ga0214471_11230457	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter → unclassified Candidatus Sulfopaludibacter → Candidatus Sulfopaludibacter sp. SbA4	569	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	83.05%
Aquatic	Environmental → Aquatic	16.95%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	77.12%
Freshwater	Environmental → Aquatic → Freshwater	15.25%
Peat	Environmental → Terrestrial → Peat	5.93%
Sediment	Environmental → Aquatic → Sediment	1.69%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	63.56%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	15.25%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	11.86%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	5.93%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	1.69%
Loam	Environmental → Terrestrial → Soil → Loam	1.69%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	47.46%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	14.41%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	11.86%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	11.86%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	5.93%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	2.54%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	1.69%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	1.69%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	0.85%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	0.85%
Uranium Contaminated	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated	0.85%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	24.58%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	19.49%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	11.86%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	6.78%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	5.93%
Fen	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Fen	5.93%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	3.39%
Bog Forest Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil	3.39%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	2.54%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	2.54%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	2.54%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	1.69%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	1.69%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	1.69%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	1.69%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland	0.85%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.85%
Arctic Peat Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil	0.85%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.85%
Soil	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated → Soil	0.85%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300004080	Coassembly of ECP04_OM1, ECP04_OM2, ECP04_OM3	Environmental	Open in IMG/M
3300004152	Coassembly of ECP12_OM1, ECP12_OM2, ECP12_OM3	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006052	Freshwater sediment microbial communities from North America - Little Laurel Run_MetaG_LLR_2013	Environmental	Open in IMG/M
3300009792	Tropical forest soil microbial communities from Panama - MetaG Plot_12	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010339	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM3	Environmental	Open in IMG/M
3300010341	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM2	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010379	Sb_50d combined assembly	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300014151	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin23_60_metaG	Environmental	Open in IMG/M
3300014168	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin17_10_metaG	Environmental	Open in IMG/M
3300016270	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080	Environmental	Open in IMG/M
3300016319	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H	Environmental	Open in IMG/M
3300016341	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170	Environmental	Open in IMG/M
3300016357	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000	Environmental	Open in IMG/M
3300016371	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172	Environmental	Open in IMG/M
3300016387	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176	Environmental	Open in IMG/M
3300016422	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111	Environmental	Open in IMG/M
3300016445	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108	Environmental	Open in IMG/M
3300017822	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_2	Environmental	Open in IMG/M
3300017930	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SourceSoil_5	Environmental	Open in IMG/M
3300017933	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_1	Environmental	Open in IMG/M
3300017948	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_4_10	Environmental	Open in IMG/M
3300017959	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP10_10_MG	Environmental	Open in IMG/M
3300017961	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP5_20_MG	Environmental	Open in IMG/M
3300017972	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0715_SJ02_MP02_20_MG	Environmental	Open in IMG/M
3300017973	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP10_20_MG	Environmental	Open in IMG/M
3300018017	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_16_40	Environmental	Open in IMG/M
3300018043	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_7_10	Environmental	Open in IMG/M
3300018046	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_6_10	Environmental	Open in IMG/M
3300018058	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP05_20_MG	Environmental	Open in IMG/M
3300018090	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP02_20_MG	Environmental	Open in IMG/M
3300020580	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M	Environmental	Open in IMG/M
3300021407	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-O	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300025507	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_8_40 (SPAdes)	Environmental	Open in IMG/M
3300025527	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 415-1 shallow-072012 (SPAdes)	Environmental	Open in IMG/M
3300026927	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 56 (SPAdes)	Environmental	Open in IMG/M
3300027783	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP14_OM2 (SPAdes)	Environmental	Open in IMG/M
3300027824	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM3 (SPAdes)	Environmental	Open in IMG/M
3300027825	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM1 (SPAdes)	Environmental	Open in IMG/M
3300027911	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2012 (SPAdes)	Environmental	Open in IMG/M
3300028652	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Fen_E3_3	Environmental	Open in IMG/M
3300030002	II_Fen_N1 coassembly	Environmental	Open in IMG/M
3300030847	Forest soil microbial communities from France for metatranscriptomics studies - Site 11 - Champenoux / Amance forest - FA10 SO (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300030943	III_Fen_N2 coassembly	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031474	Fir Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031521	III_Fen_E2 coassembly	Environmental	Open in IMG/M
3300031543	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f20	Environmental	Open in IMG/M
3300031668	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f23	Environmental	Open in IMG/M
3300031679	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f23	Environmental	Open in IMG/M
3300031681	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f20	Environmental	Open in IMG/M
3300031719	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2)	Environmental	Open in IMG/M
3300031726	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Fen_T0_1	Environmental	Open in IMG/M
3300031736	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f21	Environmental	Open in IMG/M
3300031740	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05	Environmental	Open in IMG/M
3300031747	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f22	Environmental	Open in IMG/M
3300031768	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f22	Environmental	Open in IMG/M
3300031771	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f19	Environmental	Open in IMG/M
3300031819	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f21	Environmental	Open in IMG/M
3300031833	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF178	Environmental	Open in IMG/M
3300031879	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2)	Environmental	Open in IMG/M
3300031890	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)	Environmental	Open in IMG/M
3300031893	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f28	Environmental	Open in IMG/M
3300031902	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Fen_T0_2	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental	Open in IMG/M
3300031918	III_Fen_N3 coassembly	Environmental	Open in IMG/M
3300031945	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX082	Environmental	Open in IMG/M
3300031946	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF172	Environmental	Open in IMG/M
3300031947	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.T000H	Environmental	Open in IMG/M
3300031954	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)	Environmental	Open in IMG/M
3300031965	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT100D185	Environmental	Open in IMG/M
3300032039	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f21	Environmental	Open in IMG/M
3300032042	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f26	Environmental	Open in IMG/M
3300032059	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f27	Environmental	Open in IMG/M
3300032067	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f22	Environmental	Open in IMG/M
3300032076	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300032783	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.3	Environmental	Open in IMG/M
3300032805	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.2	Environmental	Open in IMG/M
3300032829	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.3	Environmental	Open in IMG/M
3300033289	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN108	Environmental	Open in IMG/M
3300033417	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT142D155	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
Ga0062385_103031701	3300004080	Bog Forest Soil	TALRGALTASIDAALAAEQYASAHGLSIRFGSEDLRAMALSLFIQHARDGGVR*
Ga0062386_1005831723	3300004152	Bog Forest Soil	RAALTTSIDAALAAEQYASAHGLSIRFGSDDLRAMALSLFIQHARDGGVR*
Ga0062386_1008801941	3300004152	Bog Forest Soil	ALRAALTTSIDAALAAEQYASAHGLSIRFGSEDLRAMALSLFIQHARDGGVR*
Ga0062386_1018681412	3300004152	Bog Forest Soil	PAETALRAALTASIDAALAAEQYASAHGLSIRFGSEDLRAMALSLFIQTARNGGVQ*
Ga0066903_1070503902	3300005764	Tropical Forest Soil	VSHLQQALASSIDASTAAERYAAAKGFSVCFGSEDLRAMALSLFIQHAREGGLR*
Ga0075029_1000390663	3300006052	Watersheds	LRAALTASIDAALAAEQYASAHGLSIRFGSEDLRAMALSLFIQHARDGGVR*
Ga0126374_107451642	3300009792	Tropical Forest Soil	LEQALAASIDAAIAAEQYAAAKSFSARFGSEDLRAMALSLFIQHAREGGLR*
Ga0126373_101569641	3300010048	Tropical Forest Soil	AALAAEQYASAHGLSVRFGSEDLRAMALSLFIQHARDGGVR*
Ga0126373_106511261	3300010048	Tropical Forest Soil	AEQYASAHGLSIRFGSEDLRAMALSLFIQHARDGGVR*
Ga0074046_107193253	3300010339	Bog Forest Soil	LRAALRASIDAALEAEQYASAHGLSIRFGSEDLRAMALSLFIQHARDGDVR*
Ga0074045_100365674	3300010341	Bog Forest Soil	MASIDAALAAEQYASAHGLSARFGSEDLRATAVILFIQHARDGGVR*
Ga0074045_104561292	3300010341	Bog Forest Soil	AEQYASVHGLSIRFGSEDLRAMALSLFIQHARDGGVR*
Ga0074045_108145311	3300010341	Bog Forest Soil	DAALAAEQYASAHGLSIRFGSEDLRAMALSLFIQHARDGGVR*
Ga0126370_106646672	3300010358	Tropical Forest Soil	LKQALTASIDAAIAAEQYAAAKGFSVRFGSEDLRAMAPSLFIQHAREGGLR*
Ga0126370_114088842	3300010358	Tropical Forest Soil	PAETALRAALTASIDAALAAEQYASAHGLSIRFGSEDLRTMALSLFIQHARDGGVR*
Ga0126370_115087352	3300010358	Tropical Forest Soil	LRAALTASIDAALAAEQYGSVHGLSIRFGSEDLRAMALSLFIQHARDGGVR*
Ga0126378_128872452	3300010361	Tropical Forest Soil	IDAALEAERYAAEQGLSVRFGSEDLRAMALSLFIQQARNGGVR*
Ga0126379_101959731	3300010366	Tropical Forest Soil	NAETVLRAALVSSIDAALAAEQYASAHGLSVRFDSEDLRAMALSLFIQHARDGGVR*
Ga0126379_108165481	3300010366	Tropical Forest Soil	MSSIDAALAAEQYASAQGLSVRFGSEDLRAMALSLFIQHARDGGV
Ga0126379_130998121	3300010366	Tropical Forest Soil	SIDAALEAERYAAEQGLSVRFGSEDLRAMALSLFIQQARNGGVR*
Ga0126381_1003997422	3300010376	Tropical Forest Soil	LQQALTASIDAAIAAEQYAAAKGFSVRFGSEDLRAMALSLFIQGAREGGLR*
Ga0136449_1020431201	3300010379	Peatlands Soil	STPTRSGTAEAALRAALTASIDAALAAEQYASAHGLSIRFGSEDLRAMALSLFIQHARDGGVR*
Ga0136449_1043572152	3300010379	Peatlands Soil	HYATEHGLSVRFGSEDLRAMALSLFIQHARNGGAQ*
Ga0126383_107724701	3300010398	Tropical Forest Soil	ALRAALMASIDAALAAEQYALTHGLSVRFGSEDLRAMGLSLFIQHARDGGVR*
Ga0181539_13086292	3300014151	Bog	SLRSALAASIDAAIEAEHYATEHGLSVRFGSEDLRAMALSLFIQTARNGGVQ*
Ga0181534_107090402	3300014168	Bog	GHALPHLQSALASSIDAAIAAEQYAAAKGFSVRFGSEDLRAMALSLFIQHAREGGLR*
Ga0182036_105034451	3300016270	Soil	LRAALTSSIDAALAAEQYASAHGLSIRFGSEDLRAMALSLFIQHARDGGVR
Ga0182033_105647102	3300016319	Soil	TLRTALAASIDAALEAEHYAAARGLSVRFGSEDLRAMALSLFIQHARDGGVR
Ga0182033_120141821	3300016319	Soil	ATLRAALAASIDAAIEAERYASEHGLSVRFGSEDLRAMALSLFIQHARDGGVQ
Ga0182035_103071141	3300016341	Soil	TALRAALTASIDAALAAEQYASAHGLSVRFGSEDLRAMALSLFIQQARDGGMR
Ga0182032_106887081	3300016357	Soil	LGAVGAAESALRTALMTSIDAALAAELYASAHGLSIRFGSEDLRAMALSLFIQHARDGGV
Ga0182034_103565701	3300016371	Soil	SSSTAETALRAALTASIDAALAAEQYASAHGLSVRFGSEDLRAMALSLFIQQARDGGMR
Ga0182034_106898283	3300016371	Soil	IDAALAAEHYASAHGLSIRFGSEDLRAMALSLFIQHARDGGVR
Ga0182034_108176261	3300016371	Soil	VSHLEQALASSIDAAIAAEQYAATKGFSVRFGSEDLRAMALSLFIQHAREGGMR
Ga0182040_103523854	3300016387	Soil	TSIDAALAAEQYASAHGLSVRFGSEDLRAMALSLFIQHARDGGVR
Ga0182040_113554162	3300016387	Soil	GTAESALRAALMASIDAALAAEQYASAHGLSVRFGSEDLRAMALSLFIQQARDGGVR
Ga0182039_101250571	3300016422	Soil	LRAALVASIDAALAAEQNASAHGLSVRFGSEDLRAMALRLFMQHAREEVCDERRYRN
Ga0182039_102661881	3300016422	Soil	SALRTALMTSIDAALAAEQYASAHGLSVRFGSEDLRAMALSLFIQHARDGGVR
Ga0182039_107441141	3300016422	Soil	STAETALRAALTASIDAALAAEQYASAHGLSVRFGSEDLRAMALSLFIQQARDGGMR
Ga0182038_105888241	3300016445	Soil	ETALRAALTASIDAALAAEQYASAHGLSIRFGSEDLRAMALSLFIQHARDGGVR
Ga0182038_112266151	3300016445	Soil	LSSSIDAAIAAEQYAAAKGLSVRFGSEDLRAMALSLFIQHAREGGLR
Ga0187802_101608571	3300017822	Freshwater Sediment	QYASAHGLSIRFGSEDLRAMALSLFIQHARDGGVR
Ga0187825_103677642	3300017930	Freshwater Sediment	LHTALLLSIDAAIAAEHYASAKGLSVRFGSEDLRAMALSLFIQHARDGGVR
Ga0187801_104459711	3300017933	Freshwater Sediment	AVCHLQNALASSIDAAIAAEQYAATKGFSVRFGSEDLRAMALSLFIQHARDGGVR
Ga0187847_106357451	3300017948	Peatland	ETALRAALTASIDAALAAEQYASAHGLSVRFGSEDLRAMALSLFIQHARDGGVR
Ga0187779_102551043	3300017959	Tropical Peatland	VSIDAALAAEQYASAHGLSVRFGSEEMRAMALSLFIQHARAGGLR
Ga0187778_100495581	3300017961	Tropical Peatland	LRAALVASIDAALAAEQYAAAHGLSVRFGSEDLRAMALSLFIQHARDGGVR
Ga0187781_103663513	3300017972	Tropical Peatland	CVGREQYASAHGLSVRFGSEDLRAMALSLFIRHAREGGLR
Ga0187781_106179132	3300017972	Tropical Peatland	DAALAAELYASAHGLSVRFGSEDLRAMALSLFIQHARDGGVR
Ga0187780_100032949	3300017973	Tropical Peatland	VSIDAALAAEQYASAHGLSVRFGSEEMRAMALSLFIQHAREGGLR
Ga0187872_104082842	3300018017	Peatland	ERYATEHGLSVRFGSEDLRAMALSLFIQHARDGGVR
Ga0187887_106154402	3300018043	Peatland	TSIDAALAAEQYASAHGLSIRFGSEDLRAMALSLFIQHARDGGVR
Ga0187851_101283423	3300018046	Peatland	DAALAAEQYASAHGLSVRFGSEDLRAMALSLFIQHARDGGVR
Ga0187766_108314181	3300018058	Tropical Peatland	TGSGTAETALRSALMASIDAALAPEQYVSAHGLSVRFGSEDLRAMALSLFIQHTRDGGVR
Ga0187770_108304471	3300018090	Tropical Peatland	LASLRSALAASIDAAIEAERYATEHGLSIRFGSEDLRAMALSLFIQHAREGGVR
Ga0210403_113245342	3300020580	Soil	EAALRAALTASINAALAAEQYASAHGLSIRFGSEDLRAMALSLFIQHARDGGVR
Ga0210383_113872591	3300021407	Soil	AEAALRAALTASIDAALAAEQYASAHGLSIRFGSEDLRAMALSLFIQHARDGGMR
Ga0126371_110390591	3300021560	Tropical Forest Soil	SIDAALAAEQYASAHGLSIRFGSEDLRAMALSLFIQHVRDGGVR
Ga0126371_118983682	3300021560	Tropical Forest Soil	MSSIDAALAAEQYASAQGLSVRFGSEDLRAMALSLFIQ
Ga0208188_10510171	3300025507	Peatland	EQYAAAKGFSVRFGSEDLRAMALSLFIQHAREGGLR
Ga0208714_10705561	3300025527	Arctic Peat Soil	STPSSSGTAEIALRAALTASIDAALAAEQYASAHGLSIRFGSEDLRAMALSLFIQHARDGGVR
Ga0207744_10072621	3300026927	Tropical Forest Soil	ALRAALTASIDAALAAEQYASAHGLSIRFGSEDLRAMALSLFIQHARDGGVR
Ga0209448_101081152	3300027783	Bog Forest Soil	SPRNCRKALRAALTAIIDAALAAEQYASAHGLSIRFGSEDLRAMALSLFIQHAREGDVR
Ga0209040_101316301	3300027824	Bog Forest Soil	AALAAEQYASAHGLSIRFGSEDLRAMALSLFIQHARDGGVR
Ga0209040_104643562	3300027824	Bog Forest Soil	TAETALRAALTTSIDAALAAEQYASAHGLSIRFGSEDLRAMALSLFIQHARDGGVR
Ga0209039_100864693	3300027825	Bog Forest Soil	ISGTAETALRAALTASIDAALAAEQYASAHGLSIRFGSEDLRAMALSLFIQHARDGGVR
Ga0209698_105862442	3300027911	Watersheds	LRAALTASIDAALAAEQYASAHGLSIRFGSEDLRAMALSLFIQHARDGGVR
Ga0302166_100207381	3300028652	Fen	SGTAETALRAALTTSIDAALAAEQYASAHGLSIRFGSEDLRAMALSLFIQHARDGGVR
Ga0311350_105577683	3300030002	Fen	AGTPASPRTAETALRAALTTSIDAALAAEQYASAHGLSIRFGSEDLRAMALSLFIQHARDGGVR
Ga0075405_106860942	3300030847	Soil	QYASAHGLSIRFGSEDLRAMALSLFIQRARDGGVR
Ga0311366_116766512	3300030943	Fen	EQYASAHGLSIRFGSEDLRAMALSLFIQHARDGGVR
Ga0170824_1130123331	3300031231	Forest Soil	KIDAALAAERYASAHGLSIRFGSEDLRAMALSLFIQHARDGGVR
Ga0170824_1193368624	3300031231	Forest Soil	ASIDAALEAEQYASAHGLSIRFGSEDLRAMALSLFIQHARDGGVR
Ga0170818_1119374471	3300031474	Forest Soil	LRAALMASIDAALAAEKYASARGLSVRFGSENLRAMALILF
Ga0311364_115033312	3300031521	Fen	DAALAAEQYASAHGLSIRFGSEDLRAMALSLFIQHARDGGVR
Ga0318516_103522922	3300031543	Soil	PNAGIDAALAAEHYASAHGLSIRFGSEDLRAMALSLFIQHARDGGVR
Ga0318542_102014251	3300031668	Soil	VCWTLWGTRPNAGIDAALAAEHYASAHGLSIRFGSEDLRAMALSLFIQHARDGGVR
Ga0318561_101804943	3300031679	Soil	VGAAESALRSALMTSIDAALAAEQYASAHGLSVRFGSEDLRAMALSLFIQHARDGGVR
Ga0318561_104744391	3300031679	Soil	LAAEQYASAHGLSIRFGSEDLRAMALSLFIQHARDGGVR
Ga0318572_101786223	3300031681	Soil	NAPTKSGTPETALRAALTASIDAALAAEQYASAHGLSIRFGSEDLRAMALSLFIQHARDGGVR
Ga0306917_102656352	3300031719	Soil	LAAEQYASAHGLSIRFGSEDLRAMALSLFIQHARDGSVR
Ga0302321_1001746731	3300031726	Fen	AALTTSIDAALAAEQYASAHGLSIRFGSEDLRAMALSLFIQHARDGGVR
Ga0318501_102305451	3300031736	Soil	ALAAEQYASAHGLSIRFGSEDLRAMALSLFIQHARDGGVR
Ga0307468_1025020151	3300031740	Hardwood Forest Soil	EQYAATKGFSVRFGSEDLRAMALSLFIQHAREGGLR
Ga0318502_108067712	3300031747	Soil	LAASIEAAIEAERYASEHGLSVRFGSEDLRAMALSLFIQHARDGGVQ
Ga0318509_107280111	3300031768	Soil	AGTAESVLRAALISSIDAALAAEQYASAHGLSVRFGSEDLRAMALSLFIQHARDGGVR
Ga0318546_102515584	3300031771	Soil	ALTASIDAALAAEQYASAHGLSIRFGSEDLRAMALSLFIQHARDGGVR
Ga0318568_107560862	3300031819	Soil	TALRAALTASIDAALAAEQYASAYGLSIRFGSEDLRAMALSLFIQHARDGGVR
Ga0310917_103054682	3300031833	Soil	TAESVLRAALISSIDAALAAEQYASAHGLSVRFGSEDLRAMALSLFIQHARDGGVR
Ga0306919_103657012	3300031879	Soil	RTANEVTAAGTAESVLRAALISSIDAALAAEQYASAHGLSVRFGSEDLRAMALSLFIQHARDGGVR
Ga0306925_100558926	3300031890	Soil	AAEHYASAHGLSIRFGSEDLRAMALSLFIQHARDGGVR
Ga0306925_105487483	3300031890	Soil	AEQYASAHGLSVRFGSEDVRAMALSLFIQHARDGGVR
Ga0306925_118593781	3300031890	Soil	SIDAALAAEQYASAYGLSIRFGSEDLRAMALSLFIQHARDGGVR
Ga0318536_101971833	3300031893	Soil	TALMTSIDAALAAEQYASAHGLSVRFGSEDLRAMALSLFIQHARDGGVR
Ga0302322_1008826721	3300031902	Fen	RSALTASIDAALAAEQYASAHGLSIRFGSEDLRAMALSLFIQHARDGGVR
Ga0306923_115017231	3300031910	Soil	ALSSSIDAAIAAEQYAAAKGLSVRFGSEDLRAMALSLFIQHAREGGLR
Ga0306921_105179861	3300031912	Soil	EQYASAHGLSIRFGSEDLRAMAVSLFIQHARDGGVR
Ga0311367_112461672	3300031918	Fen	PTKSGTAETALRAALTTSIDAALAAEQYASAHGLSIRFGSEDLRAMALSLFIQHARDGGV
Ga0310913_107048632	3300031945	Soil	QYAATKGFSVRFGSEDLRAMALSLFIQHAREAGLR
Ga0310910_110531402	3300031946	Soil	GSGPAETALRAALTASIDAALAAEQYASAHGLSIRFGSEDLRAMALSLFIQHARDGGVR
Ga0310909_104518321	3300031947	Soil	AAEQYASALGLSIRFGSEDLRAMALSLFIQHARDGGMR
Ga0306926_114536131	3300031954	Soil	LAAEQYPYAKGLSIRFGSEDLRAMALSLFTQYALDEHACRN
Ga0326597_105017001	3300031965	Soil	IAAEHYASAKGLSVRFGSEDLRAMALSLFIQHARDGGVR
Ga0318559_101151493	3300032039	Soil	SGPAETALRAALTASIDAALAAEQYASALGLSIRFGSEDLRAMALSLFIQHARDGGMR
Ga0318545_100899383	3300032042	Soil	AEQYASAHGLSIRFGSEDLRAMALSLFIQHARDGGVR
Ga0318533_100287515	3300032059	Soil	AAEQYASAHGLSIRFGSEDLRAMALSLFIQHARDGGVR
Ga0318524_104549712	3300032067	Soil	LWVTRPNAGIDAALAAEHYASAHGLSIRFGSEDLRAMALSLFIQHARDGGVR
Ga0306924_100157827	3300032076	Soil	TLWGTRPNAGIDAALAAEHYASAHGLSIRFGSEDLRAMALSLFIQHARDGGVR
Ga0306924_101923174	3300032076	Soil	ASIDAALAAEQYASAYGLSIRFGSEDLRAMALSLFIQHARDGGVR
Ga0306924_104553683	3300032076	Soil	ANALTKSVTPETALRAALTASIDAALAAEQYASAHGLSIRFGSEDLRAMALSLFIQHARDGGVR
Ga0306924_110253983	3300032076	Soil	VLNGSNGAQAARRAALAASIEAAIEAERYASEHGLSVRFGSEDLRAMALSLFIQHARDGGVQ
Ga0306924_113970741	3300032076	Soil	LEAEQYAAAHGLSVRFGSEDLRAMALSLFIQHARDGGVR
Ga0306920_1044359302	3300032261	Soil	AEQYASALGLSIRFGSEDLRAMALSLFIQHARDGGMR
Ga0335079_104687574	3300032783	Soil	AHLQSALSSSIDAAIAAEQYAAAKGLSVRFGSEDLRAMALSLFIQHAREGGLR
Ga0335078_101551411	3300032805	Soil	ALMASIDAALAAEQYASAHGLAVRFGSEDLRAMALSLFIQHARDGGVR
Ga0335070_111237572	3300032829	Soil	ASIDAALAAEQYASAHGLSIRFGSEDLRAMALSLFIQHARDGGVR
Ga0310914_105079461	3300033289	Soil	TAESALRAALMASIDAALAAEQYASAHGLSVRFGSEDLRAMALSLFIQQARDGGVR
Ga0214471_112304572	3300033417	Soil	SALRKALVASIEAALAAEQYACAKGLSIRFGSEDLRAMALSLFIQHARDGGVR

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F075550

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences