Metagenome / Metatranscriptome Family F075300

Basic Information
Family ID	F075300
Family Type	Metagenome / Metatranscriptome
Number of Sequences	119
Average Sequence Length	41 residues
Representative Sequence	VKARNHSRVASALPHSEGIAYKPPCGEIAMCLRVGRMGPIK
Number of Associated Samples	105
Number of Associated Scaffolds	119

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	37.29 %
% of genes near scaffold ends (potentially truncated)	90.76 %
% of genes from short scaffolds (< 2000 bps)	90.76 %
Associated GOLD sequencing projects	101
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.14

Most Common Taxonomy
Group	Unclassified (51.261 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (17.647 % of family members)
Environment Ontology (ENVO)	Unclassified (25.210 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (57.143 % of family members)

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Predicted Topology & Secondary Structure
Classification:	Fibrous	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 0.00% β-sheet: 0.00% Coil/Unstructured: 100.00%
Feature Viewer

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Pfam ID	Name	% Frequency in 119 Family Scaffolds
PF00078	RVT_1	4.20
PF01548	DEDD_Tnp_IS110	1.68
PF08388	GIIM	1.68
PF07505	DUF5131	0.84
PF01996	F420_ligase	0.84
PF04392	ABC_sub_bind	0.84
PF00665	rve	0.84
PF02371	Transposase_20	0.84
PF02899	Phage_int_SAM_1	0.84
PF03928	HbpS-like	0.84
PF00872	Transposase_mut	0.84
PF13358	DDE_3	0.84
PF13683	rve_3	0.84
PF09361	Phasin_2	0.84
PF08714	Fae	0.84

COG ID	Name	Functional Category	% Frequency in 119 Family Scaffolds
COG3547	Transposase	Mobilome: prophages, transposons [X]	2.52
COG1478	F420-0:Gamma-glutamyl ligase (F420 biosynthesis)	Coenzyme transport and metabolism [H]	0.84
COG1795	Formaldehyde-activating enzyme (5,6,7,8-tetrahydromethanopterin hydrolyase)	Energy production and conversion [C]	0.84
COG2801	Transposase InsO and inactivated derivatives	Mobilome: prophages, transposons [X]	0.84
COG2826	Transposase and inactivated derivatives, IS30 family	Mobilome: prophages, transposons [X]	0.84
COG2984	ABC-type uncharacterized transport system, periplasmic component	General function prediction only [R]	0.84
COG3316	Transposase (or an inactivated derivative), DDE domain	Mobilome: prophages, transposons [X]	0.84
COG3328	Transposase (or an inactivated derivative)	Mobilome: prophages, transposons [X]	0.84
COG4422	Bacteriophage protein gp37	Mobilome: prophages, transposons [X]	0.84
COG4584	Transposase	Mobilome: prophages, transposons [X]	0.84
COG4973	Site-specific recombinase XerC	Replication, recombination and repair [L]	0.84
COG4974	Site-specific recombinase XerD	Replication, recombination and repair [L]	0.84

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	51.26 %
All Organisms	root	All Organisms	48.74 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	51.26 %
cellular organisms	root	All Organisms → cellular organisms	48.74 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	51.26 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	48.74 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	51.26 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	22.69 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	18.49 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.84 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	51.26 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	22.69 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	13.45 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.84 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.84 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	51.26 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	22.69 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	10.08 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	2.52 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	0.84 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.84 %
Chloroflexia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia	0.84 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	51.26 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	22.69 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	9.24 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2.52 %
environmental samples	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia → environmental samples	0.84 %
Burkholderiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	0.84 %
Acetobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	0.84 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	51.26 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	22.69 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	9.24 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2.52 %
uncultured Chloroflexia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia → environmental samples → uncultured Chloroflexia bacterium	0.84 %
Acidisphaera	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Acidisphaera	0.84 %
Burkholderia	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Burkholderia	0.84 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	51.26 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	22.69 %
Bradyrhizobium centrolobii	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium centrolobii	8.40 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2.52 %
Bradyrhizobium neotropicale	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium neotropicale	0.84 %
uncultured Chloroflexia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia → environmental samples → uncultured Chloroflexia bacterium	0.84 %
Acidisphaera	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Acidisphaera	0.84 %
Burkholderia	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Burkholderia	0.84 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000816\|AF_2010_repII_A10DRAFT_1002847	All Organisms → cellular organisms → Bacteria	1755	Open in IMG/M
3300001160\|JGI12654J13325_1009274	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	677	Open in IMG/M
3300001213\|JGIcombinedJ13530_105329910	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium centrolobii	549	Open in IMG/M
3300005166\|Ga0066674_10259480	Not Available	822	Open in IMG/M
3300005174\|Ga0066680_10887635	Not Available	530	Open in IMG/M
3300005332\|Ga0066388_100494303	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1860	Open in IMG/M
3300005563\|Ga0068855_102373025	Not Available	530	Open in IMG/M
3300005578\|Ga0068854_100065637	All Organisms → cellular organisms → Bacteria → Proteobacteria	2639	Open in IMG/M
3300005591\|Ga0070761_10770277	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Burkholderia	605	Open in IMG/M
3300005618\|Ga0068864_102069571	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	576	Open in IMG/M
3300005947\|Ga0066794_10136640	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	736	Open in IMG/M
3300006046\|Ga0066652_100690352	Not Available	971	Open in IMG/M
3300006052\|Ga0075029_101239297	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	522	Open in IMG/M
3300006055\|Ga0097691_1014328	All Organisms → cellular organisms → Bacteria	3712	Open in IMG/M
3300006169\|Ga0082029_1719468	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	541	Open in IMG/M
3300006173\|Ga0070716_101650911	Not Available	527	Open in IMG/M
3300006174\|Ga0075014_100858333	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	540	Open in IMG/M
3300006796\|Ga0066665_10917912	Not Available	677	Open in IMG/M
3300006796\|Ga0066665_11280178	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	562	Open in IMG/M
3300006797\|Ga0066659_11708498	Not Available	531	Open in IMG/M
3300006950\|Ga0075524_10170613	Not Available	945	Open in IMG/M
3300006954\|Ga0079219_10446556	All Organisms → cellular organisms → Bacteria	880	Open in IMG/M
3300009036\|Ga0105244_10509698	Not Available	554	Open in IMG/M
3300009519\|Ga0116108_1260313	Not Available	506	Open in IMG/M
3300009548\|Ga0116107_1110210	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	805	Open in IMG/M
3300009617\|Ga0116123_1034114	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1523	Open in IMG/M
3300009665\|Ga0116135_1036326	Not Available	1696	Open in IMG/M
3300009824\|Ga0116219_10528882	Not Available	651	Open in IMG/M
3300010046\|Ga0126384_12374864	Not Available	513	Open in IMG/M
3300010047\|Ga0126382_11007937	Not Available	730	Open in IMG/M
3300010049\|Ga0123356_12551563	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia → environmental samples → uncultured Chloroflexia bacterium	640	Open in IMG/M
3300010112\|Ga0127458_1071949	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	828	Open in IMG/M
3300010366\|Ga0126379_11493069	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	781	Open in IMG/M
3300010366\|Ga0126379_12065998	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	672	Open in IMG/M
3300010376\|Ga0126381_100314110	All Organisms → cellular organisms → Bacteria	2151	Open in IMG/M
3300010376\|Ga0126381_104667719	Not Available	528	Open in IMG/M
3300010376\|Ga0126381_104872122	Not Available	516	Open in IMG/M
3300010399\|Ga0134127_12727516	Not Available	574	Open in IMG/M
3300011089\|Ga0138573_1045140	Not Available	602	Open in IMG/M
3300012210\|Ga0137378_11803897	Not Available	516	Open in IMG/M
3300012285\|Ga0137370_10681572	All Organisms → cellular organisms → Bacteria	638	Open in IMG/M
3300012357\|Ga0137384_10884257	Not Available	720	Open in IMG/M
3300012363\|Ga0137390_11186538	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Acidisphaera	711	Open in IMG/M
3300012381\|Ga0134026_1038543	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	551	Open in IMG/M
3300012397\|Ga0134056_1341400	Not Available	858	Open in IMG/M
3300012399\|Ga0134061_1281282	Not Available	651	Open in IMG/M
3300012961\|Ga0164302_11925208	Not Available	504	Open in IMG/M
3300012971\|Ga0126369_11697227	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium centrolobii	721	Open in IMG/M
3300013307\|Ga0157372_10118342	Not Available	3040	Open in IMG/M
3300013308\|Ga0157375_12810137	Not Available	582	Open in IMG/M
3300014501\|Ga0182024_10942678	Not Available	1036	Open in IMG/M
3300016270\|Ga0182036_11055572	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium centrolobii	671	Open in IMG/M
3300016270\|Ga0182036_11480477	Not Available	569	Open in IMG/M
3300016357\|Ga0182032_10062004	All Organisms → cellular organisms → Bacteria → Proteobacteria	2483	Open in IMG/M
3300016357\|Ga0182032_11241204	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	642	Open in IMG/M
3300016357\|Ga0182032_11868464	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	525	Open in IMG/M
3300016404\|Ga0182037_11594209	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium centrolobii	580	Open in IMG/M
3300016422\|Ga0182039_10677213	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	908	Open in IMG/M
3300016445\|Ga0182038_11585477	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium centrolobii	589	Open in IMG/M
3300016445\|Ga0182038_12189636	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium centrolobii	501	Open in IMG/M
3300017947\|Ga0187785_10347523	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	697	Open in IMG/M
3300017959\|Ga0187779_11041562	Not Available	569	Open in IMG/M
3300018033\|Ga0187867_10004046	All Organisms → cellular organisms → Bacteria → Proteobacteria	11481	Open in IMG/M
3300018465\|Ga0190269_11261355	Not Available	587	Open in IMG/M
3300018465\|Ga0190269_11810595	Not Available	521	Open in IMG/M
3300019881\|Ga0193707_1170074	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	588	Open in IMG/M
3300020082\|Ga0206353_11503239	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	688	Open in IMG/M
3300020580\|Ga0210403_11226650	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	576	Open in IMG/M
3300021168\|Ga0210406_10963332	Not Available	637	Open in IMG/M
3300021168\|Ga0210406_11328544	Not Available	516	Open in IMG/M
3300021168\|Ga0210406_11381964	Not Available	503	Open in IMG/M
3300021406\|Ga0210386_11683616	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	524	Open in IMG/M
3300022527\|Ga0242664_1137308	Not Available	531	Open in IMG/M
3300022531\|Ga0242660_1129470	Not Available	644	Open in IMG/M
3300022886\|Ga0247746_1140285	Not Available	612	Open in IMG/M
3300025481\|Ga0208079_1097864	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	543	Open in IMG/M
3300025891\|Ga0209585_10305608	Not Available	638	Open in IMG/M
3300025915\|Ga0207693_10059550	Not Available	2991	Open in IMG/M
3300025927\|Ga0207687_11371168	All Organisms → cellular organisms → Bacteria	608	Open in IMG/M
3300025972\|Ga0207668_10054432	Not Available	2777	Open in IMG/M
3300026121\|Ga0207683_11167492	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	714	Open in IMG/M
3300026271\|Ga0209880_1121607	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	517	Open in IMG/M
3300026272\|Ga0209913_1105954	Not Available	581	Open in IMG/M
3300026309\|Ga0209055_1241577	Not Available	557	Open in IMG/M
3300026868\|Ga0207818_1021158	Not Available	572	Open in IMG/M
3300027094\|Ga0208094_109321	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	512	Open in IMG/M
3300027324\|Ga0209845_1040664	Not Available	739	Open in IMG/M
3300027884\|Ga0209275_10880093	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	516	Open in IMG/M
3300028381\|Ga0268264_11921894	All Organisms → cellular organisms → Bacteria	601	Open in IMG/M
3300028710\|Ga0307322_10233361	Not Available	508	Open in IMG/M
3300030007\|Ga0311338_12011317	Not Available	513	Open in IMG/M
3300030688\|Ga0311345_11145979	Not Available	570	Open in IMG/M
3300030831\|Ga0308152_113683	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium centrolobii	531	Open in IMG/M
3300031094\|Ga0308199_1122920	Not Available	593	Open in IMG/M
3300031423\|Ga0308177_1023774	Not Available	557	Open in IMG/M
3300031561\|Ga0318528_10632416	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium centrolobii	573	Open in IMG/M
3300031561\|Ga0318528_10701649	Not Available	541	Open in IMG/M
3300031573\|Ga0310915_10567140	Not Available	805	Open in IMG/M
3300031640\|Ga0318555_10516121	Not Available	647	Open in IMG/M
3300031668\|Ga0318542_10108673	All Organisms → cellular organisms → Bacteria → Proteobacteria	1346	Open in IMG/M
3300031679\|Ga0318561_10362969	Not Available	794	Open in IMG/M
3300031719\|Ga0306917_11277644	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	568	Open in IMG/M
3300031720\|Ga0307469_10652420	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	948	Open in IMG/M
3300031748\|Ga0318492_10243596	Not Available	928	Open in IMG/M
3300031751\|Ga0318494_10677227	Not Available	603	Open in IMG/M
3300031753\|Ga0307477_10016828	All Organisms → cellular organisms → Bacteria	4992	Open in IMG/M
3300031860\|Ga0318495_10465659	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium centrolobii	553	Open in IMG/M
3300031890\|Ga0306925_10107281	All Organisms → cellular organisms → Bacteria → Proteobacteria	2976	Open in IMG/M
3300031894\|Ga0318522_10368203	Not Available	544	Open in IMG/M
3300031954\|Ga0306926_10432638	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium neotropicale	1622	Open in IMG/M
3300031954\|Ga0306926_12099693	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	632	Open in IMG/M
3300032001\|Ga0306922_10768336	Not Available	1009	Open in IMG/M
3300032001\|Ga0306922_11551793	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	660	Open in IMG/M
3300032060\|Ga0318505_10535695	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium centrolobii	551	Open in IMG/M
3300032064\|Ga0318510_10431945	Not Available	564	Open in IMG/M
3300032075\|Ga0310890_11529338	Not Available	550	Open in IMG/M
3300032076\|Ga0306924_12567263	Not Available	509	Open in IMG/M
3300033290\|Ga0318519_10234357	Not Available	1057	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	90.76%
Host-Associated	Host-Associated	9.24%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	84.03%
Plants	Host-Associated → Plants	8.40%
Aquatic	Environmental → Aquatic	6.72%
Arthropoda	Host-Associated → Arthropoda	0.84%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	82.35%
Freshwater	Environmental → Aquatic → Freshwater	4.20%
Rhizoplane	Host-Associated → Plants → Rhizoplane	4.20%
Rhizosphere	Host-Associated → Plants → Rhizosphere	4.20%
Sediment	Environmental → Aquatic → Sediment	1.68%
Peat	Environmental → Terrestrial → Peat	1.68%
Marine	Environmental → Aquatic → Marine	0.84%
Digestive System	Host-Associated → Arthropoda → Digestive System	0.84%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	69.75%
Loam	Environmental → Terrestrial → Soil → Loam	6.72%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	5.04%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	4.20%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	3.36%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	3.36%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	1.68%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	1.68%
Wetlands	Environmental → Aquatic → Marine → Wetlands	0.84%
Sand	Environmental → Terrestrial → Soil → Sand	0.84%
Gut	Host-Associated → Arthropoda → Digestive System → Gut	0.84%
Soil	Host-Associated → Plants → Rhizoplane → Soil	0.84%
Soil	Host-Associated → Plants → Rhizosphere → Soil	0.84%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	33.61%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	24.37%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	5.88%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	5.04%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	3.36%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	3.36%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	3.36%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	3.36%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	3.36%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	1.68%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	1.68%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	1.68%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	1.68%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	1.68%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	0.84%
Sediment	Environmental → Aquatic → Marine → Wetlands → Sediment	0.84%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	0.84%
Unclassified	Environmental → Terrestrial → Soil → Sand → Unclassified	0.84%
Unclassified	Host-Associated → Arthropoda → Digestive System → Gut → Unclassified	0.84%
Unclassified	Host-Associated → Plants → Rhizoplane → Soil → Unclassified	0.84%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	0.84%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	17.65%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	13.45%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	6.72%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	6.72%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	5.88%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland	3.36%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	3.36%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	3.36%
Arctic Peat Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil	3.36%
Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Soil	2.52%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	1.68%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	1.68%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	1.68%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	1.68%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	1.68%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	1.68%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	1.68%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	1.68%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	1.68%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	1.68%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.68%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	0.84%
Wetland	Environmental → Aquatic → Marine → Wetlands → Sediment → Wetland	0.84%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.84%
Termite Nest	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Termite Nest	0.84%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	0.84%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.84%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.84%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.84%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	0.84%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost	0.84%
Groundwater Sand	Environmental → Terrestrial → Soil → Sand → Unclassified → Groundwater Sand	0.84%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	0.84%
Bog	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog	0.84%
Termite Gut	Host-Associated → Arthropoda → Digestive System → Gut → Unclassified → Termite Gut	0.84%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere	0.84%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.84%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.84%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	0.84%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000816	Forest soil microbial communities from Amazon forest - 2010 replicate II A10	Environmental	Open in IMG/M
3300001160	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM3H0_M2	Environmental	Open in IMG/M
3300001213	Combined assembly of wetland microbial communities from Twitchell Island in the Sacramento Delta (Jan 2013 JGI Velvet Assembly)	Environmental	Open in IMG/M
3300005166	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_123	Environmental	Open in IMG/M
3300005174	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_129	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005563	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2	Host-Associated	Open in IMG/M
3300005578	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2	Host-Associated	Open in IMG/M
3300005591	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF1	Environmental	Open in IMG/M
3300005618	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2	Host-Associated	Open in IMG/M
3300005947	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Permafrost soil replicate 2 DNA2013-190	Environmental	Open in IMG/M
3300006046	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_101	Environmental	Open in IMG/M
3300006052	Freshwater sediment microbial communities from North America - Little Laurel Run_MetaG_LLR_2013	Environmental	Open in IMG/M
3300006055	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 210-1 deep-072012	Environmental	Open in IMG/M
3300006169	Termite nest microbial communities from Madurai, India	Environmental	Open in IMG/M
3300006173	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG	Environmental	Open in IMG/M
3300006174	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2014	Environmental	Open in IMG/M
3300006796	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114	Environmental	Open in IMG/M
3300006797	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_108	Environmental	Open in IMG/M
3300006950	Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE Permafrost154B-one	Environmental	Open in IMG/M
3300006954	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control	Environmental	Open in IMG/M
3300009036	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG	Host-Associated	Open in IMG/M
3300009519	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_6_150	Environmental	Open in IMG/M
3300009548	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_6_100	Environmental	Open in IMG/M
3300009617	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_13_100	Environmental	Open in IMG/M
3300009665	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_20_10	Environmental	Open in IMG/M
3300009824	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_6_BS metaG	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010049	Embiratermes neotenicus P3 segment gut microbial communities from Petit-Saut dam, French Guiana - Emb289 P3	Host-Associated	Open in IMG/M
3300010112	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Wat_40_5_4_2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010399	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3	Environmental	Open in IMG/M
3300011089	Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 58 (Metagenome Metatranscriptome) (version 2)	Environmental	Open in IMG/M
3300012210	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_60_16 metaG	Environmental	Open in IMG/M
3300012285	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_20_16 metaG	Environmental	Open in IMG/M
3300012357	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_60_16 metaG	Environmental	Open in IMG/M
3300012363	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4A metaG	Environmental	Open in IMG/M
3300012381	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_20cm_2_24_1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012397	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_40cm_5_24_1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012399	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_40cm_5_24_2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012961	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_202_MG	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300013307	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG	Host-Associated	Open in IMG/M
3300013308	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG	Host-Associated	Open in IMG/M
3300014501	Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300016270	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080	Environmental	Open in IMG/M
3300016357	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000	Environmental	Open in IMG/M
3300016404	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082	Environmental	Open in IMG/M
3300016422	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111	Environmental	Open in IMG/M
3300016445	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108	Environmental	Open in IMG/M
3300017947	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0815_BV2_4_20_MG	Environmental	Open in IMG/M
3300017959	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP10_10_MG	Environmental	Open in IMG/M
3300018033	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_13_10	Environmental	Open in IMG/M
3300018465	Populus adjacent soil microbial communities from riparian zone of Blue River, Arizona, USA - 249 IS	Environmental	Open in IMG/M
3300019881	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U3c2	Environmental	Open in IMG/M
3300020082	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-4 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300020580	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M	Environmental	Open in IMG/M
3300021168	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-M	Environmental	Open in IMG/M
3300021406	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-O	Environmental	Open in IMG/M
3300022527	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-4-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022531	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-28-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022886	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S079-202R-5	Environmental	Open in IMG/M
3300025481	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 210-2 deep-092012 (SPAdes)	Environmental	Open in IMG/M
3300025891	Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE Permafrost154B-one (SPAdes)	Environmental	Open in IMG/M
3300025915	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025927	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025972	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026121	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026271	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Permafrost soil replicate 2 DNA2013-191 (SPAdes)	Environmental	Open in IMG/M
3300026272	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Permafrost soil leachate replicate DNA2013-203 (SPAdes)	Environmental	Open in IMG/M
3300026309	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_110 (SPAdes)	Environmental	Open in IMG/M
3300026868	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 32 (SPAdes)	Environmental	Open in IMG/M
3300027094	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF022 (SPAdes)	Environmental	Open in IMG/M
3300027324	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S2_50_60 (SPAdes)	Environmental	Open in IMG/M
3300027884	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2 (SPAdes)	Environmental	Open in IMG/M
3300028381	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300028710	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_380	Environmental	Open in IMG/M
3300030007	I_Palsa_E1 coassembly	Environmental	Open in IMG/M
3300030688	II_Bog_N2 coassembly	Environmental	Open in IMG/M
3300030831	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_141 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031094	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_203 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031423	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_148 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031561	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f26	Environmental	Open in IMG/M
3300031573	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111	Environmental	Open in IMG/M
3300031640	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f23	Environmental	Open in IMG/M
3300031668	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f23	Environmental	Open in IMG/M
3300031679	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f23	Environmental	Open in IMG/M
3300031719	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2)	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300031748	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f22	Environmental	Open in IMG/M
3300031751	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f24	Environmental	Open in IMG/M
3300031753	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_515	Environmental	Open in IMG/M
3300031835	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f21	Environmental	Open in IMG/M
3300031860	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f25	Environmental	Open in IMG/M
3300031890	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)	Environmental	Open in IMG/M
3300031894	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f18	Environmental	Open in IMG/M
3300031954	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)	Environmental	Open in IMG/M
3300032001	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)	Environmental	Open in IMG/M
3300032060	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f18	Environmental	Open in IMG/M
3300032064	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f17	Environmental	Open in IMG/M
3300032075	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D3	Environmental	Open in IMG/M
3300032076	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)	Environmental	Open in IMG/M
3300033290	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f15	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
AF_2010_repII_A10DRAFT_10028471	3300000816	Forest Soil	VKARNHLRVASALPHSEGIAYKPLCGEIAMCPRVGRMGSIK*
JGI12654J13325_10092742	3300001160	Forest Soil	KEWSAKARNHPRVASALPHSEGIAYKPLCGEIAMCSRVGRMGSIK*
JGIcombinedJ13530_1053299101	3300001213	Wetland	MECAVKARNCSRVASALPHSEGITYKPPCGEIAMCLRVGR
Ga0066674_102594801	3300005166	Soil	MVAKARNHPRVASALPHSEGIAYKPPCGEIAMCSRVGRMGSIK*
Ga0066680_108876351	3300005174	Soil	AKARNHPRVASALPHSEGIAYKPPCGEIAMCSRVGRMGSIK*
Ga0066388_1004943031	3300005332	Tropical Forest Soil	AKARNRSRVASALPHSEGSTYKSPCDEVVLCPRVGADGAE*
Ga0068855_1023730251	3300005563	Corn Rhizosphere	VKARNHSRVASALPHSEGIAYKPPCGEIAMCLRVG
Ga0068854_1000656371	3300005578	Corn Rhizosphere	VKARNHSRVASALPHSEGIAYKPPCGEVAMCRRVGRM
Ga0070761_107702771	3300005591	Soil	RVASALPHSEGIAYKPLCGEIAMCPRVGRMGPIK*
Ga0068864_1020695711	3300005618	Switchgrass Rhizosphere	NHSRVASALPHSEGIAYKPPCGEIAMCARVGRMGSIK*
Ga0066794_101366401	3300005947	Soil	KECAVKARNHSRVASALPHSEGIAYKPPCGEIAMCLRVGRMRPIK*
Ga0066652_1006903523	3300006046	Soil	AAKARNHSRVASALPHSEGIAYKPNGEIAMCPRVGRMGPIK*
Ga0075029_1012392971	3300006052	Watersheds	HSRVAEALPHSEGVTHKPPCGEIVTCLRVGQMGSIK*
Ga0097691_10143286	3300006055	Arctic Peat Soil	VKARNHSRVASALPHSEGIAYKPLCGEIAMCLRVGRMGPIK*
Ga0082029_17194681	3300006169	Termite Nest	QDGIGAKARNHARVASALPHSEGIASKAPCGEVAMCSRVGRMGSIK*
Ga0070716_1016509112	3300006173	Corn, Switchgrass And Miscanthus Rhizosphere	MVSEARNHPRVASALPHSEGIAYKPLCGEIAMCSRVGRMGSIK*
Ga0075014_1008583332	3300006174	Watersheds	AKKEWSAKARNHPRVASALPHSEGIAYKPLCGEIAMCSRVGRMGSIK*
Ga0066665_109179121	3300006796	Soil	EGMVAKARNHPRVASALPHSEGIAYKPPCGEIAMCSRVGRMGSIK*
Ga0066665_112801782	3300006796	Soil	MVAKARNHPRVASALPHSEGIAYKPPCGEIAMCSRVGR
Ga0066659_117084981	3300006797	Soil	RKEWTAKARNHPRVASALPHSEGIAYKPPSSEVAMCSRVERMGSIK*
Ga0075524_101706132	3300006950	Arctic Peat Soil	VKARNHSRVASALPHSEGIAYKPPCGEIAMCLRVGRM
Ga0079219_104465561	3300006954	Agricultural Soil	VAKARNHAWVASALPHSEGIAYKPSYGEVAMRPRVGRMGPVRAVSG*
Ga0105244_105096981	3300009036	Miscanthus Rhizosphere	MGVKARNHARVASALPHSEGIAYKPPCGEVAMCRRV
Ga0116108_12603131	3300009519	Peatland	VKARNHSRVASALPHSEGIAYKPPCGEIAMRLRVG
Ga0116107_11102101	3300009548	Peatland	TAKAGNQSRVAEAETHSEGMAYKPQSGEIAMCPRVGRMRPNK*
Ga0116123_10341141	3300009617	Peatland	RVAEAETHSEGMAYKPQSGEIAMCPRVGRMRPNKLGWFGTA*
Ga0116135_10363261	3300009665	Peatland	RNHSRVASALPHSEGIAYKPPCGEIAMCLRVGRMGSIK*
Ga0116219_105288821	3300009824	Peatlands Soil	VKARNHSRAASALPHSEGIAYKPLCGEIAMCPRVGRMG
Ga0126384_123748641	3300010046	Tropical Forest Soil	ECAAKARNHSRVASALPHSEGIAYKPLCGEIAMCPRVARMGSIKW*
Ga0126382_110079372	3300010047	Tropical Forest Soil	RNHPRVASALPHSEGIAYKPPCGEIAMCSRVGRMGSIK*
Ga0123356_125515631	3300010049	Termite Gut	DKEEWSAKARNHSRVALALPHSEGIAYKLPCGEIAMCLRAGRMGPSK*
Ga0127458_10719491	3300010112	Grasslands Soil	CQDGMVAKARNHSRVASALPHSEGIAYKPPCGEIAMCPRVGRMGPIK*
Ga0126379_114930691	3300010366	Tropical Forest Soil	KKEWSAKARNHPRVASALPHSEGIAYKPLCGEIAMRSRVGRMGSIK*
Ga0126379_120659981	3300010366	Tropical Forest Soil	ARNHSRVASALPHSEGIAYKPLCGEIAMCRRVGRMGSIKW*
Ga0126381_1003141101	3300010376	Tropical Forest Soil	SRVASALPHSEGIAYKPLRGEIAMCLRVGRMGSIK*
Ga0126381_1046677192	3300010376	Tropical Forest Soil	VKARNHSRVAEALPHSEGIAYKPLCGEIAMCLRVGRMGPIK*
Ga0126381_1048721221	3300010376	Tropical Forest Soil	SRVASALLHSEGIAYKPPCGEIAMCLRVGRMGSVK*
Ga0134127_127275162	3300010399	Terrestrial Soil	MVAKARNHSRVASALPHSEGIAYKPSYGEVAMCLRVGRMGPVKRGRT
Ga0138573_10451401	3300011089	Peatlands Soil	VKARNHSRAASALPHSEGIAYKPPCGEIAMCLRVGRMG
Ga0137378_118038971	3300012210	Vadose Zone Soil	RVASALPHSEGIAYKPPCGEIAVCPRVGRMGSIK*
Ga0137370_106815721	3300012285	Vadose Zone Soil	KARNRSRVAPALPHSEGIAYKPPCGEIAMCPRVGRMGPIK*
Ga0137384_108842571	3300012357	Vadose Zone Soil	VKARNHSRVAKALPYSEDIAYKPPCGEIAVCLRVGRMRPIS
Ga0137390_111865382	3300012363	Vadose Zone Soil	AKARNHSRVASALPHSEDIAYKPLRGEIAMCLRVGRMGSIK*
Ga0134026_10385431	3300012381	Grasslands Soil	TACQDGMVAKARNHSRVASALPHSEGIAYKPSYGEVAMCPRVGRMGPVK*
Ga0134056_13414002	3300012397	Grasslands Soil	RNRSRVASALPHSEGIAYKPPCGEIAMCPRVGRMGPIK*
Ga0134061_12812822	3300012399	Grasslands Soil	VKARNHSRVASALPHSEGIAYKPPCGEVAMCRRVGRMGPAKR
Ga0164302_119252081	3300012961	Soil	SRVASALPHSEGIAYKPPCGEIAMCLRVGRMGPIK*
Ga0126369_116972271	3300012971	Tropical Forest Soil	ARIHSRVASALPHSEGIAYKPLCGEIAMCLRVGRMRSIK*
Ga0157372_101183422	3300013307	Corn Rhizosphere	VKARNHSRVASALPHSEGIAYKPPCGEIAMCLRVGRMGPIK*
Ga0157375_128101371	3300013308	Miscanthus Rhizosphere	VKARNHSRVASALPHSEGIAYKPPCGEIAMCPRVGRMGPI
Ga0182024_109426782	3300014501	Permafrost	KARNHSWVASALPHSEGIAYKPLCGEIAMCPRVGRMGPIKR*
Ga0182036_110555721	3300016270	Soil	VKARIHSRVASALPHSEDIAYKPPSGGIEMCSRVRRLGKTK
Ga0182036_114804771	3300016270	Soil	ARNHPRVASALPHSEGIAYKPPCGEIAMCSRVGRMGSIK
Ga0182032_100620041	3300016357	Soil	MECAVKAGNHSRVASALPHSEGIAYKPPCGEIAVCLRAGRMG
Ga0182032_112412041	3300016357	Soil	AKARNHSRVASALPHSEGIAYKPPCGEIAMCLRVGRMRPTK
Ga0182032_118684641	3300016357	Soil	HSRVASALPHSEGIAYKPPCGEIAMCLRVGRMGSVK
Ga0182037_115942091	3300016404	Soil	VKARIHSRVASALPHSEDIAYKPPSGEIAMCSRVGRMGST
Ga0182039_106772131	3300016422	Soil	KARNHPRVASALPHSEGIAFKPPCGEIAMCSRVGRMGSIK
Ga0182038_115854772	3300016445	Soil	MVAKARNHPRVASALPHSEGIAYKPPCGEIAMCSRVGRMGSI
Ga0182038_121896361	3300016445	Soil	VKARNHPRVASALPHSEGIAYKPPCGEIAMCLRVGRMGS
Ga0187785_103475231	3300017947	Tropical Peatland	AEKEWSAKARNHPRVASALPHSEGIAYKTQCGEIAMCSRVGRMGSIK
Ga0187779_110415621	3300017959	Tropical Peatland	AKARNRARVASALPHSEGIAYKPLCGEIAVCPRVGRMGSIK
Ga0187867_1000404618	3300018033	Peatland	VKARNHSRVASALPRSEGIAYKPPCGEIAMYLRVGRMRPIK
Ga0190269_112613551	3300018465	Soil	RTECQDGMTAKARNYSRVASALPHSEGIAYKLPCSEIAMCSRVGRMGSTK
Ga0190269_118105951	3300018465	Soil	MTAKARNYSRVASALPHSEGLAYKPSYGEVAMCRRVGRMGPV
Ga0193707_11700741	3300019881	Soil	SAKARNHPRVASALPHSEGIAYKPLCGEIAMCSRVGRMGSIK
Ga0206353_115032391	3300020082	Corn, Switchgrass And Miscanthus Rhizosphere	VKARNHSRVASALPHSEGIAYKPPCGEVAMCRRVG
Ga0210403_112266501	3300020580	Soil	RHAKKEWSAKARNHPRVASALPHSEGIAYKPLCGEIAMCSRVGRMGSIK
Ga0210406_109633321	3300021168	Soil	VKARNHLRVASALPHSEGIAYKPPCGEIAMCLRVGRM
Ga0210406_113285441	3300021168	Soil	VKARNHSRVASALLHSEGIAYKPPCGEIAMCPRVGR
Ga0210406_113819641	3300021168	Soil	VKARNHSWVASALPHSEGNAYKPQCGEIALCPSQRRPD
Ga0210386_116836161	3300021406	Soil	HRERHAKKEWSAKARNHPRVASALPHSEGIAYKPLCGEIAMCSRVGRMGSIK
Ga0242664_11373081	3300022527	Soil	VKARNHSRVASALLRSEGIAYKPPCGEIAMCLRVGRMRP
Ga0242660_11294702	3300022531	Soil	ALPHSEGIAYKPLCGEIAMCSRVGRMGSITIVSAD
Ga0247746_11402851	3300022886	Soil	MVAKARNHSRVASALPHSEGIAYKPPCGEVAMCRRVGRMGP
Ga0208079_10978641	3300025481	Arctic Peat Soil	HSRVASALPHSEGIAYKPFYGEIAMCLRVGRMGPSK
Ga0209585_103056081	3300025891	Arctic Peat Soil	VKARNHSRVASALPHSEGIAYKPPCGEIAMCLRVGR
Ga0207693_100595502	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	VKARNHSRVASALPHSEGIAYKPPCGEIAMCLRVGRMRPIK
Ga0207687_113711681	3300025927	Miscanthus Rhizosphere	MGVKARNHSRVASALPHSEGIAYKPPCGEVAMCLRVGRM
Ga0207668_100544322	3300025972	Switchgrass Rhizosphere	VKARNHSRVASALPHSEGIAYKPPCGEIAMCLRVGRMGPIK
Ga0207683_111674921	3300026121	Miscanthus Rhizosphere	KKEWSAKARNHPRVASALPHSEGIAYKPLCGEIAMCSRVGRMGSSK
Ga0209880_11216071	3300026271	Soil	KECAVKARNHLRVASALPHSEGIAYKPPCGEIAMCLRVGRMRPIK
Ga0209913_11059541	3300026272	Soil	VKARNHSRVASALPHSEGIAYKPPCGEIAMCLRVGRMG
Ga0209055_12415771	3300026309	Soil	PRVASALPHSEGIAYKPPSSEVAMCSRVERMGSIK
Ga0207818_10211581	3300026868	Tropical Forest Soil	VKARNRSRVAEALPHSEGIAYKPPCGEITMCLRAGRMGPIK
Ga0208094_1093211	3300027094	Forest Soil	ARNHPRVASALPHSEGIAYKPLCGEIAMCSRVGRMGSIK
Ga0209845_10406641	3300027324	Groundwater Sand	ETEQAVKARNHSSVAEALPHSEGSAYKPLCGEIALCRQVGRMGPGKR
Ga0209275_108800931	3300027884	Soil	KEWSAKARNHPRVASALPHSEGIAYKPLCGEIAMCSRVGRMGSIK
Ga0268264_119218941	3300028381	Switchgrass Rhizosphere	VKARNHSRVASALPHSEGIAYKPPCGEVAMCRRVGRMGPVKRGR
Ga0307322_102333611	3300028710	Soil	AKARNHPRIASALPHSEGIAYKLPSSEIAMCPRVGRMGSIK
Ga0311338_120113171	3300030007	Palsa	VKARNRSRVASALPHSEGIAYKPLCGEIAMCLRAGRMGP
Ga0311345_111459792	3300030688	Bog	ARNHSRVASALPHSEDIAYKPPRGEIAMCLRVGRMGSIK
Ga0308152_1136831	3300030831	Soil	VKARNHSRVASALPHSEGIAYKPPCGEVAMCRRVGRMGPVK
Ga0308199_11229201	3300031094	Soil	KKEWSAKARNHPRVASALPHSEGIAYKPLCGEIAMCSRVGRMGSIK
Ga0308177_10237741	3300031423	Soil	MVAKARNHSRVASALPHSEGIAYKPPCGEVAMCPRVGRMGPV
Ga0318528_106324161	3300031561	Soil	MVAKARNHPRVASALPHSEGIAYKPPCGEIAMCSRVG
Ga0318528_107016491	3300031561	Soil	GHRERHAKKEWSAKARNHPRVASALPHSEGIAYKLLCSEIAMCPRVGRMGSIK
Ga0310915_105671401	3300031573	Soil	VKARNHSRVAEALPHSEGIAYKPLCGEIAMCLRVGRMGPIK
Ga0318555_105161212	3300031640	Soil	KERAVKARNHSRVAEALPHSEGIAYKPLCGEITMCPRVGRMGPIKW
Ga0318542_101086731	3300031668	Soil	VRKEWAAKARNHSRVASALPHSEGIAYKPLCGEIAMCPQVGRRSIK
Ga0318561_103629691	3300031679	Soil	ECTAKARNHSGVAEALPHSEGIAYKPPCGEIAVCPRVGRMGSIK
Ga0306917_112776441	3300031719	Soil	RHAKKVWSVKARNHPRVASALPHSEGIAYKLPCSEIAMCSRVGRMGSVK
Ga0307469_106524202	3300031720	Hardwood Forest Soil	MVAKARNHPRVASALPHSEGIAYKPPCGEIAMCSRVGRMGSIK
Ga0318492_102435961	3300031748	Soil	RMECAVKARNHSRVASALPHSEGIAYKPPCGEIAVCLRVGRMGSIK
Ga0318494_106772271	3300031751	Soil	RERHAKKEWSAKARNHPRVASALPHSEGIAYKLLCSEIAMCPRVGRMGSIK
Ga0307477_100168286	3300031753	Hardwood Forest Soil	CLGIGAHALMHSEDISYKPPSGEVELCLRVGRMGSIK
Ga0318517_105151341	3300031835	Soil	PRGHRERHAKKEWSAKARNHPRVASALPHSEGIAYKLLCSEIAMCPRVGRMGSIK
Ga0318495_104656591	3300031860	Soil	MVAKARNHPRVASALPHSEGIAYKPPCGEIAMCSRVGRMG
Ga0306925_101072814	3300031890	Soil	VKARNHLRVASALPHSEGIAYKPLCGEIAMCPQVGRMGSIK
Ga0318522_103682031	3300031894	Soil	AKARNHSRVAEALPHSEGIAYKPLCGEIAMCLRVGRMGPIK
Ga0306926_104326381	3300031954	Soil	KARNRSRVADALPHSEGIAYKPPCGEIAVCLRAGRMGSIK
Ga0306926_120996931	3300031954	Soil	RHAKKEWSAKARNHPRVASALPHSEGIAYKPLCGEIVMCSRVGRMGSIK
Ga0306922_107683361	3300032001	Soil	RNHSRVASALPHSEGIAYKPPCGEIAVCLRVGRMGSIK
Ga0306922_115517931	3300032001	Soil	KARNHPRVASALPHSEGIAYKPPCGEIAMCSRVGRMGSIK
Ga0318505_105356951	3300032060	Soil	VKARNRSRVAEALPHSEGIAYKPPCGEITMCLRAGRMGPTK
Ga0318510_104319451	3300032064	Soil	IHSRVASALPHSEDIAYKPPSGEVAMCPRVGRMGSIK
Ga0310890_115293381	3300032075	Soil	VKARNHSRVASALPHSEGIAYKPPCGEIAMYLRVGRM
Ga0306924_125672631	3300032076	Soil	MECAVKARNHSRVASALPHSEGIAYKPPCGEIAVCLRVGRMGS
Ga0318519_102343572	3300033290	Soil	VKARNHLRVASALPHSEGIAYKPLCGEIAMCPRVGRMG

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.14
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.14
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NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F075300

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Hidden Markov Model


Click on a Sequence Logo column to get its information.
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