Metagenome / Metatranscriptome Family F075229

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F075229
Family Type	Metagenome / Metatranscriptome
Number of Sequences	119
Average Sequence Length	52 residues
Representative Sequence	MQSHGITLSFHREMADSSRELVGPDFSAAVIFESYPRFIKGGFQDYEGLGI
Number of Associated Samples	102
Number of Associated Scaffolds	119

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	8.47 %
% of genes near scaffold ends (potentially truncated)	94.96 %
% of genes from short scaffolds (< 2000 bps)	92.44 %
Associated GOLD sequencing projects	97
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.24

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (99.160 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (26.891 % of family members)
Environment Ontology (ENVO)	Unclassified (30.252 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (54.622 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 11.39% β-sheet: 0.00% Coil/Unstructured: 88.61%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.24
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.24
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 119 Family Scaffolds
PF00072	Response_reg	10.92
PF04392	ABC_sub_bind	4.20
PF00571	CBS	3.36
PF07750	GcrA	2.52
PF11154	DUF2934	1.68
PF05860	TPS	1.68
PF00501	AMP-binding	0.84
PF13561	adh_short_C2	0.84
PF13586	DDE_Tnp_1_2	0.84
PF08483	Obsolete Pfam Family	0.84
PF06808	DctM	0.84
PF00872	Transposase_mut	0.84
PF01936	NYN	0.84
PF13581	HATPase_c_2	0.84
PF00067	p450	0.84
PF01695	IstB_IS21	0.84
PF02518	HATPase_c	0.84
PF03979	Sigma70_r1_1	0.84
PF00590	TP_methylase	0.84
PF11994	DUF3489	0.84
PF01370	Epimerase	0.84

COG ID	Name	Functional Category	% Frequency in 119 Family Scaffolds
COG2984	ABC-type uncharacterized transport system, periplasmic component	General function prediction only [R]	4.20
COG5352	Uncharacterized conserved protein	Function unknown [S]	2.52
COG3210	Large exoprotein involved in heme utilization or adhesion	Intracellular trafficking, secretion, and vesicular transport [U]	1.68
COG0568	DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)	Transcription [K]	0.84
COG1432	NYN domain, predicted PIN-related RNAse, tRNA/rRNA maturation	General function prediction only [R]	0.84
COG1484	DNA replication protein DnaC	Replication, recombination and repair [L]	0.84
COG2124	Cytochrome P450	Defense mechanisms [V]	0.84
COG3328	Transposase (or an inactivated derivative)	Mobilome: prophages, transposons [X]	0.84

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	99.16 %
Unclassified	root	N/A	0.84 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	99.16 %
Unclassified	root	N/A	0.84 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	99.16 %
Unclassified	root	N/A	0.84 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	92.44 %
Unclassified	root	N/A	0.84 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	89.92 %
Unclassified	root	N/A	0.84 %

Name	Rank	Taxonomy	Distribution
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	70.59 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3.36 %
Unclassified	root	N/A	0.84 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	70.59 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	2.52 %
Unclassified	root	N/A	0.84 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	70.59 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2.52 %
Unclassified	root	N/A	0.84 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2040502001\|FACENC_GAMC6GA01CB3CR	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	500	Open in IMG/M
3300000597\|AF_2010_repII_A1DRAFT_10152180	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	556	Open in IMG/M
3300004156\|Ga0062589_102268455	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	557	Open in IMG/M
3300004267\|Ga0066396_10031839	All Organisms → cellular organisms → Bacteria	772	Open in IMG/M
3300005171\|Ga0066677_10533714	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	673	Open in IMG/M
3300005172\|Ga0066683_10111530	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1664	Open in IMG/M
3300005332\|Ga0066388_101493210	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1181	Open in IMG/M
3300005332\|Ga0066388_101520164	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1172	Open in IMG/M
3300005437\|Ga0070710_10077155	All Organisms → cellular organisms → Bacteria → Proteobacteria	1935	Open in IMG/M
3300005454\|Ga0066687_10526237	All Organisms → cellular organisms → Bacteria	700	Open in IMG/M
3300005468\|Ga0070707_101273460	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	701	Open in IMG/M
3300005552\|Ga0066701_10878514	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	532	Open in IMG/M
3300005553\|Ga0066695_10137807	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1514	Open in IMG/M
3300005560\|Ga0066670_10545427	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	709	Open in IMG/M
3300005713\|Ga0066905_101643557	All Organisms → cellular organisms → Bacteria	589	Open in IMG/M
3300005764\|Ga0066903_101782018	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1175	Open in IMG/M
3300005764\|Ga0066903_105066349	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	698	Open in IMG/M
3300006034\|Ga0066656_10227705	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1193	Open in IMG/M
3300006046\|Ga0066652_100420698	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1222	Open in IMG/M
3300006046\|Ga0066652_100443125	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1193	Open in IMG/M
3300006173\|Ga0070716_100782893	All Organisms → cellular organisms → Bacteria → Proteobacteria	737	Open in IMG/M
3300006175\|Ga0070712_101359448	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	619	Open in IMG/M
3300006844\|Ga0075428_102686055	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	508	Open in IMG/M
3300006845\|Ga0075421_101801623	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	658	Open in IMG/M
3300006871\|Ga0075434_102333245	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	538	Open in IMG/M
3300006914\|Ga0075436_100600670	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	811	Open in IMG/M
3300009012\|Ga0066710_102081650	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	836	Open in IMG/M
3300009012\|Ga0066710_103113597	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	641	Open in IMG/M
3300009137\|Ga0066709_102785921	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	649	Open in IMG/M
3300009162\|Ga0075423_10465862	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1328	Open in IMG/M
3300009162\|Ga0075423_11946994	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	636	Open in IMG/M
3300010043\|Ga0126380_10163998	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1442	Open in IMG/M
3300010046\|Ga0126384_11050830	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	744	Open in IMG/M
3300010303\|Ga0134082_10074368	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1325	Open in IMG/M
3300010303\|Ga0134082_10493453	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	533	Open in IMG/M
3300010304\|Ga0134088_10403253	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	667	Open in IMG/M
3300010336\|Ga0134071_10506903	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	624	Open in IMG/M
3300010358\|Ga0126370_11869832	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	583	Open in IMG/M
3300010358\|Ga0126370_12385711	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	525	Open in IMG/M
3300010359\|Ga0126376_12543326	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	560	Open in IMG/M
3300010361\|Ga0126378_13467236	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	500	Open in IMG/M
3300010366\|Ga0126379_13859575	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	502	Open in IMG/M
3300010376\|Ga0126381_104095262	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	566	Open in IMG/M
3300012202\|Ga0137363_10455601	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1071	Open in IMG/M
3300012207\|Ga0137381_11162061	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	663	Open in IMG/M
3300012209\|Ga0137379_10622813	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	985	Open in IMG/M
3300012209\|Ga0137379_10670409	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	943	Open in IMG/M
3300012211\|Ga0137377_11453833	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	613	Open in IMG/M
3300012350\|Ga0137372_11114836	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	540	Open in IMG/M
3300012356\|Ga0137371_10126054	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2002	Open in IMG/M
3300012356\|Ga0137371_10944685	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	655	Open in IMG/M
3300012359\|Ga0137385_10850682	All Organisms → cellular organisms → Bacteria	756	Open in IMG/M
3300012361\|Ga0137360_10454873	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1085	Open in IMG/M
3300012362\|Ga0137361_11371498	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	631	Open in IMG/M
3300012917\|Ga0137395_10906832	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	637	Open in IMG/M
3300012948\|Ga0126375_11124519	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	649	Open in IMG/M
3300012951\|Ga0164300_10703440	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	612	Open in IMG/M
3300012958\|Ga0164299_10870166	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	650	Open in IMG/M
3300012988\|Ga0164306_10993415	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	691	Open in IMG/M
3300014157\|Ga0134078_10169095	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	872	Open in IMG/M
3300016341\|Ga0182035_10830824	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	812	Open in IMG/M
3300016387\|Ga0182040_10701943	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	827	Open in IMG/M
3300016404\|Ga0182037_11286650	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	644	Open in IMG/M
3300016422\|Ga0182039_11082607	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	721	Open in IMG/M
3300018433\|Ga0066667_10765060	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	817	Open in IMG/M
3300018468\|Ga0066662_10997351	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	829	Open in IMG/M
3300018482\|Ga0066669_10166525	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1644	Open in IMG/M
3300020580\|Ga0210403_11087406	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	622	Open in IMG/M
3300021168\|Ga0210406_10048274	All Organisms → cellular organisms → Bacteria → Proteobacteria	3738	Open in IMG/M
3300021168\|Ga0210406_11377626	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	504	Open in IMG/M
3300021178\|Ga0210408_10459094	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1014	Open in IMG/M
3300021478\|Ga0210402_10730007	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	914	Open in IMG/M
3300021560\|Ga0126371_10303006	All Organisms → cellular organisms → Bacteria	1725	Open in IMG/M
3300021560\|Ga0126371_10628177	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1223	Open in IMG/M
3300021560\|Ga0126371_13585268	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	524	Open in IMG/M
3300022726\|Ga0242654_10338964	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	563	Open in IMG/M
3300025915\|Ga0207693_10522946	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	926	Open in IMG/M
3300026490\|Ga0257153_1066622	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	728	Open in IMG/M
3300026550\|Ga0209474_10047847	All Organisms → cellular organisms → Bacteria	3075	Open in IMG/M
3300027903\|Ga0209488_10663805	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	750	Open in IMG/M
3300027909\|Ga0209382_11692003	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	621	Open in IMG/M
3300028536\|Ga0137415_10551224	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	962	Open in IMG/M
3300028811\|Ga0307292_10294929	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	679	Open in IMG/M
3300028875\|Ga0307289_10163609	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	915	Open in IMG/M
3300031544\|Ga0318534_10188784	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1190	Open in IMG/M
3300031545\|Ga0318541_10098490	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1567	Open in IMG/M
3300031545\|Ga0318541_10212524	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1071	Open in IMG/M
3300031546\|Ga0318538_10315891	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	842	Open in IMG/M
3300031564\|Ga0318573_10085659	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1598	Open in IMG/M
3300031564\|Ga0318573_10596615	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	595	Open in IMG/M
3300031573\|Ga0310915_10722744	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	702	Open in IMG/M
3300031668\|Ga0318542_10165114	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1106	Open in IMG/M
3300031681\|Ga0318572_10267287	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1007	Open in IMG/M
3300031736\|Ga0318501_10630235	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	589	Open in IMG/M
3300031768\|Ga0318509_10686930	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	568	Open in IMG/M
3300031771\|Ga0318546_10421232	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	933	Open in IMG/M
3300031792\|Ga0318529_10258912	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	810	Open in IMG/M
3300031835\|Ga0318517_10305534	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	719	Open in IMG/M
3300031835\|Ga0318517_10420723	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	603	Open in IMG/M
3300031890\|Ga0306925_11525554	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	653	Open in IMG/M
3300031912\|Ga0306921_10776431	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1096	Open in IMG/M
3300031942\|Ga0310916_10046340	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	3300	Open in IMG/M
3300031946\|Ga0310910_11053189	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	634	Open in IMG/M
3300031954\|Ga0306926_10344030	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1844	Open in IMG/M
3300031954\|Ga0306926_10402466	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1689	Open in IMG/M
3300031954\|Ga0306926_11695823	All Organisms → cellular organisms → Bacteria	721	Open in IMG/M
3300032001\|Ga0306922_10073533	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	3576	Open in IMG/M
3300032010\|Ga0318569_10594032	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	515	Open in IMG/M
3300032025\|Ga0318507_10477538	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	543	Open in IMG/M
3300032042\|Ga0318545_10318420	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	559	Open in IMG/M
3300032051\|Ga0318532_10363556	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	514	Open in IMG/M
3300032066\|Ga0318514_10668707	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	552	Open in IMG/M
3300032068\|Ga0318553_10015093	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3488	Open in IMG/M
3300032090\|Ga0318518_10154055	All Organisms → cellular organisms → Bacteria	1168	Open in IMG/M
3300032174\|Ga0307470_10058183	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2021	Open in IMG/M
3300032180\|Ga0307471_100013131	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	5690	Open in IMG/M
3300032261\|Ga0306920_103875890	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	545	Open in IMG/M
3300033290\|Ga0318519_11031256	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	511	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	94.12%
Host-Associated	Host-Associated	5.88%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	94.12%
Plants	Host-Associated → Plants	5.88%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	94.12%
Rhizosphere	Host-Associated → Plants → Rhizosphere	5.88%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	84.03%
Loam	Environmental → Terrestrial → Soil → Loam	10.08%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	5.88%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	38.66%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	31.93%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	12.61%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	5.88%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	5.04%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	4.20%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.84%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.84%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	26.89%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	12.61%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	10.08%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	9.24%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	7.56%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	5.88%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	5.04%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	5.04%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	4.20%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	4.20%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	4.20%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	1.68%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.84%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.84%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.84%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.84%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2040502001	Soil microbial communities from sample at FACE Site 2 North Carolina CO2+	Environmental	Open in IMG/M
3300000597	Forest soil microbial communities from Amazon forest - 2010 replicate II A1	Environmental	Open in IMG/M
3300004156	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 1	Environmental	Open in IMG/M
3300004267	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 6 MoBio	Environmental	Open in IMG/M
3300005171	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_126	Environmental	Open in IMG/M
3300005172	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_132	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005437	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG	Environmental	Open in IMG/M
3300005454	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_136	Environmental	Open in IMG/M
3300005468	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG	Environmental	Open in IMG/M
3300005552	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_150	Environmental	Open in IMG/M
3300005553	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_144	Environmental	Open in IMG/M
3300005560	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_119	Environmental	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006034	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_105	Environmental	Open in IMG/M
3300006046	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_101	Environmental	Open in IMG/M
3300006173	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG	Environmental	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300006844	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2	Host-Associated	Open in IMG/M
3300006845	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5	Host-Associated	Open in IMG/M
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated	Open in IMG/M
3300006914	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5	Host-Associated	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010303	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_09182015	Environmental	Open in IMG/M
3300010304	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_09182015	Environmental	Open in IMG/M
3300010336	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_09082015	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012207	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_115_16 metaG	Environmental	Open in IMG/M
3300012209	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_80_16 metaG	Environmental	Open in IMG/M
3300012211	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_40_16 metaG	Environmental	Open in IMG/M
3300012285	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_20_16 metaG	Environmental	Open in IMG/M
3300012350	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_60_16 metaG	Environmental	Open in IMG/M
3300012356	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_40_16 metaG	Environmental	Open in IMG/M
3300012359	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_80_16 metaG	Environmental	Open in IMG/M
3300012361	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaG	Environmental	Open in IMG/M
3300012362	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaG	Environmental	Open in IMG/M
3300012917	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk2.16 metaG	Environmental	Open in IMG/M
3300012948	Tropical forest soil microbial communities from Panama - MetaG Plot_14	Environmental	Open in IMG/M
3300012951	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_226_MG	Environmental	Open in IMG/M
3300012958	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_221_MG	Environmental	Open in IMG/M
3300012988	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_242_MG	Environmental	Open in IMG/M
3300014157	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_20cm_2_24_1 metaG	Environmental	Open in IMG/M
3300016341	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170	Environmental	Open in IMG/M
3300016387	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176	Environmental	Open in IMG/M
3300016404	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082	Environmental	Open in IMG/M
3300016422	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111	Environmental	Open in IMG/M
3300018433	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116	Environmental	Open in IMG/M
3300018468	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111	Environmental	Open in IMG/M
3300018482	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_118	Environmental	Open in IMG/M
3300020580	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M	Environmental	Open in IMG/M
3300021168	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-M	Environmental	Open in IMG/M
3300021178	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-M	Environmental	Open in IMG/M
3300021478	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300022726	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-30-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300025915	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300026490	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DW-10-A	Environmental	Open in IMG/M
3300026550	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_145 (SPAdes)	Environmental	Open in IMG/M
3300027903	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2 (SPAdes)	Environmental	Open in IMG/M
3300027909	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5 (SPAdes)	Host-Associated	Open in IMG/M
3300028536	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300028811	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_149	Environmental	Open in IMG/M
3300028875	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_143	Environmental	Open in IMG/M
3300031544	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f26	Environmental	Open in IMG/M
3300031545	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f26	Environmental	Open in IMG/M
3300031546	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f23	Environmental	Open in IMG/M
3300031564	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f21	Environmental	Open in IMG/M
3300031573	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111	Environmental	Open in IMG/M
3300031668	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f23	Environmental	Open in IMG/M
3300031681	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f20	Environmental	Open in IMG/M
3300031736	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f21	Environmental	Open in IMG/M
3300031768	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f22	Environmental	Open in IMG/M
3300031771	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f19	Environmental	Open in IMG/M
3300031792	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f23	Environmental	Open in IMG/M
3300031835	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f21	Environmental	Open in IMG/M
3300031890	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)	Environmental	Open in IMG/M
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental	Open in IMG/M
3300031942	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF176	Environmental	Open in IMG/M
3300031946	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF172	Environmental	Open in IMG/M
3300031954	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)	Environmental	Open in IMG/M
3300032001	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)	Environmental	Open in IMG/M
3300032010	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f22	Environmental	Open in IMG/M
3300032025	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f20	Environmental	Open in IMG/M
3300032042	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f26	Environmental	Open in IMG/M
3300032051	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f26	Environmental	Open in IMG/M
3300032066	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f18	Environmental	Open in IMG/M
3300032068	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f21	Environmental	Open in IMG/M
3300032090	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f22	Environmental	Open in IMG/M
3300032174	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_05	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300033290	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f15	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
FACENCE_1242670	2040502001	Soil	MQSPGITLSFHREMANSSRELVGPDVSAAVTFESYPRFIKGGFQDYEGLGIKRS
AF_2010_repII_A1DRAFT_101521802	3300000597	Forest Soil	MQSHGITLSFHREMADSSRELVGPDVSAAVSFESYPRFIKRGF
Ga0062589_1022684553	3300004156	Soil	MQSHGITLSFHREMANSSRELVGLDVSAAVTFESYPRFIKGGFQDYEGLGIKRSTAYSKHVPSVTLEVARKQ
Ga0066396_100318391	3300004267	Tropical Forest Soil	MQSHGITLSFHREMADSSRELVGPDFSAAVIFESYPRFIKGGFQDYEGLGI
Ga0066677_105337142	3300005171	Soil	MQSHGITLSFHREMADSSRELVGPDGSAAVTLESYPRFIKGGFQDYEG
Ga0066683_101115304	3300005172	Soil	MQSHGITLSFHREMADASRELVGPDITAAVSFESYPRFVKGGFQDYEGLG
Ga0066388_1014932101	3300005332	Tropical Forest Soil	MQSHGITLSFHREMADSARELVRLDGSAAVTLESYPRFIKGGFQDYEGLG
Ga0066388_1015201641	3300005332	Tropical Forest Soil	MQLHGITLAFHRKMADSSREFVGPDVIAAISLESYPRFIKGG
Ga0070710_100771551	3300005437	Corn, Switchgrass And Miscanthus Rhizosphere	MQSHGITLSFHREMANSSRELVGPDASAAVTLESYPRFIKGGFQDYEGLGIKRST
Ga0066687_105262372	3300005454	Soil	MQTHGVTLSFHREMTDSSRELVGPDITAAVSFESYPRFIKGGFQDYEGLGIKRSTA
Ga0070707_1012734602	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	MQSHGITLSFHREMADSSGELGGPDITAAVRFESYPRFIKGGFENYEG
Ga0066701_108785141	3300005552	Soil	MQSHGITLSFHREMADSSSELAGPDVTDAVNFESYPRFIKGGFQDYEGLG
Ga0066695_101378074	3300005553	Soil	MQTHGVTLSFHREMADSSRELVGPDITAAVSFESYPRFIKGGFQDYEGLGIKRSTADSK
Ga0066670_105454271	3300005560	Soil	VQSHGIPLPFHREMADSSCELVGPDVTAAITFESYPGFIKGCFEDYEGLGIK*
Ga0066905_1016435571	3300005713	Tropical Forest Soil	MQSLGITLSFHREMADLSRELVGPDGSAAGSFESYP
Ga0066903_1017820182	3300005764	Tropical Forest Soil	MQSHGITLSFHREMADSSRELGGPDSTAAFILERYPRFIKGSFQDYEGLSG*
Ga0066903_1050663493	3300005764	Tropical Forest Soil	MQSPGITLSFHREMANSSRELVGPDVSAAVTFESYP
Ga0066656_102277051	3300006034	Soil	MQSHGITLSFHREMADSSRELVGPDVSAAVTFESYPRFIKGGFQDYEGLGIKRSTADSKHVPS
Ga0066652_1004206984	3300006046	Soil	MQSHGITLSFHREMADSSRELVGPDGSAAVTLESYPRF
Ga0066652_1004431251	3300006046	Soil	MQSHGITLSFHREMADSSRELVGPDVSAAVTFESYPRFIKGG
Ga0070716_1007828931	3300006173	Corn, Switchgrass And Miscanthus Rhizosphere	MQSQGITLSFYREMADSSRELVGPDIAAAVILERYPRFIKGGFQDYDGFGIKRSTADSKHVPS
Ga0070712_1013594482	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	MQSYGVTLPFHREMADSSRELVGPDGSAAASFESYPRFIKGGFQDDQG
Ga0075428_1026860551	3300006844	Populus Rhizosphere	MQTHGITLSFHREMADSSRELVGPDISAAVTLESYPRFIKGGFQDYEGLGIKGSTAD
Ga0075421_1018016232	3300006845	Populus Rhizosphere	MQTHGITLSFHREMADSSRELVGPDISAAVTLESYPRFIKGGFQDYEGLGIK
Ga0075434_1023332451	3300006871	Populus Rhizosphere	MQSQGITLSFYREMADSSRELVGPDIAAAVILERYPRFIKGGFQDY
Ga0075436_1006006702	3300006914	Populus Rhizosphere	MQSHGITLSFHREMADSSRELVRLDGSAAVTLESYPRFIKGGFQDYEGLGIKRSTA
Ga0066710_1020816502	3300009012	Grasslands Soil	MQSHGITLSFHREMADSSGELGGPDITAAVTLESYPRFIKGGFQDYEGLGIKRSTADSKHVP
Ga0066710_1031135971	3300009012	Grasslands Soil	MQSHGITLSFHREMADSSRELAGPDVTDAVSFESYPRF
Ga0066709_1027859211	3300009137	Grasslands Soil	MQSHGITLSFHREMADSSSELAGPDVTDAVNFESYPRFIKGGFQDYEGL
Ga0075423_104658622	3300009162	Populus Rhizosphere	MQSHGITLAFHREMADSSRELVGPDITAAATLERYPRFIKGGFQDYERLGVKRSTASPSMFPPYG*
Ga0075423_119469941	3300009162	Populus Rhizosphere	MQSHGITLSFHREMADSSGELGGPDIAAAVRFESYPRFIKGGFQDYKSLGIKRSTADSKHVPSPRSRL
Ga0126380_101639981	3300010043	Tropical Forest Soil	MQSDGITLSFHREMADSSRELVGPDVSAAVSFESYPRFIKCGFQDYEG
Ga0126384_110508301	3300010046	Tropical Forest Soil	VQSHGITLSFNRKMADSSRELVGPDVIIAVSFESYPRFIKGGFQDYEG
Ga0134082_100743681	3300010303	Grasslands Soil	MQTHGVTLSFHREMADSSREFVGPDITAAVSFESYPRFIKGGFQDYEGLGIKRSTADSKHVPSLRSR
Ga0134082_104934531	3300010303	Grasslands Soil	MQSHGITLSFHREMADSSGELVGSDGSAAVTFETYPRFIKGGFQDYEGFGIKRSTADFKHVPSI*
Ga0134088_104032532	3300010304	Grasslands Soil	MQTHGVTLSFHREMADSSREFVGPDITAAVSFESYPRFIKGGFQDYEGFGIKRSTADSK
Ga0134071_105069032	3300010336	Grasslands Soil	MQSHGITLSFHREMADASRELVGPDITAAVSFESYPRFVKGGFQDYEGLGIK
Ga0126370_118698322	3300010358	Tropical Forest Soil	MQSHGITLSFHREMADSSRELVGFDFTAAVILESYPRFIEGGFQDYEGL
Ga0126370_123857111	3300010358	Tropical Forest Soil	MQSHGITLSFHREMADSTRELVRLDGSAAVTLKSY
Ga0126376_125433261	3300010359	Tropical Forest Soil	PVMQSHGITLSFHREMADSARELVRLDGSAAVTLESYPRFIKGGFQDYEGLGIKRSTADSKHVPSI*
Ga0126378_134672362	3300010361	Tropical Forest Soil	MQSRGITLSFHREMAYSSRELVGPDGSAAVTLESYPRFIKGGFQDY
Ga0126379_138595752	3300010366	Tropical Forest Soil	MQSSGITLSFHREMANSSSELVGPDVSAAVAFESYPRFIKGGFQDYKGLGIKRSTA
Ga0126381_1040952622	3300010376	Tropical Forest Soil	MQSLGITLSFHREMADSSRELVRLDGSAAVTLESYP
Ga0137363_104556011	3300012202	Vadose Zone Soil	MQSHGITLSFHREMADSSRELVGPDITAAVSFESYPRFIKGGFQDYEGLGIKRSTADSKH
Ga0137381_111620611	3300012207	Vadose Zone Soil	MQSHGITLSFHREMADASRELVGPNVTAAGSLESYPRFIKGGFQDYEGLGIKRSTADSK
Ga0137379_106228131	3300012209	Vadose Zone Soil	VQSHGITLSFHREMADSSRELGGPDITAAVRFESYPRFIKGG
Ga0137379_106704093	3300012209	Vadose Zone Soil	MQAHGITLSFHREMADSSRELGGPDVTDAVNFESYPRFIKGGFQDYEGLGIKRSTADS
Ga0137377_114538331	3300012211	Vadose Zone Soil	MQSHGITLSFHREMADSSRELAGPDVTDAVNFESYPRFIKGGFQDYEGLG
Ga0137370_101050521	3300012285	Vadose Zone Soil	MQTHGVTLSFHREMADSSREFVGPDITAAVSFESYPRFIQGGFNDYERLGIKRSTADSKHVTSLRSRLLGNKVFGVSPRK
Ga0137372_111148361	3300012350	Vadose Zone Soil	MQSHGITLSFHREMADSSGELGGPDVTDAVNFESYPRFIKGGFQDYE
Ga0137371_101260545	3300012356	Vadose Zone Soil	MQTHGVTLSFHREMADSSREFVGPDITAAVSFESYPRFIKGGFQDYEGLGIKRSTADSKHVPSLRS
Ga0137371_109446851	3300012356	Vadose Zone Soil	MQSHGITLSFHREMADSSRELVGPDITAAVPFESYPRFIKGGFQDYEGLGIKRSTADS
Ga0137385_108506821	3300012359	Vadose Zone Soil	HKRPVVQSHGITLSFNREMADSSRELVGPDVSAAVSFESYPRFIKGGFQDYEGLGIK*
Ga0137360_104548731	3300012361	Vadose Zone Soil	MQSHGITLSFHREMADSSRELVGPDITAAVSFESYPRFIKG
Ga0137361_113714981	3300012362	Vadose Zone Soil	MPTPFHREMADSSRELVGPDITAAVTFESYPRFIKGG
Ga0137395_109068321	3300012917	Vadose Zone Soil	MQSHGITLSFHREMADSSGELGGPDITAAVRFESYPRFIKGGFENYEGLGIKRSTADSKH
Ga0126375_111245191	3300012948	Tropical Forest Soil	VMQSHGITLSFHREMADSTRELVRLDGSAAVTLESYPRFIKGGFQDPAQEQR*
Ga0164300_107034403	3300012951	Soil	MQSHGITLSFHREMANSSRELVGPDASAAVTLESYPRFIKGGFQDYKCFGIKRSTAYSKHVPSVRSRLR
Ga0164299_108701661	3300012958	Soil	MQAHGITLPFHREMADSSRELVGPDITAAATLERDPRFIKGGFQDYEGLGIKRSTADSKHVPSV
Ga0164306_109934153	3300012988	Soil	MQPLGITLTFHREMANSSRELVGSDGSGAGSFESYPRFIKGGF
Ga0134078_101690951	3300014157	Grasslands Soil	MQTHGVTLSFHREMADSSREFVGPDITAAVSFESYPRFIKGGFQDYEGLGIKRSTADSKHVPSVRSRLPGNKVF
Ga0182035_108308242	3300016341	Soil	VQSHGITLSFHREMTDSSRELVGPDISATVTFEGYPRFIKGGFEDYEGLGIKRCTADSKHVPLSMIEVARKQRVLES
Ga0182040_107019432	3300016387	Soil	MQSHGITLSFHREMADSTRELVRLDGSAAVTLESYPRFIKGGFQDYEGLGI
Ga0182037_112866501	3300016404	Soil	MQSHGITLSFHREMADSSRELGGPDITAAVSLESYPRFVKGGFQDYEGLG
Ga0182039_110826072	3300016422	Soil	MQSHGITLSFHREMADSSRELGGPDITAAVSLESYPRFVKGGF
Ga0066667_107650602	3300018433	Grasslands Soil	MQPHGITLSFHREMADSSGELGGPDITAAVRFERYPRFIKGGFQDYERLGVKRS
Ga0066662_109973512	3300018468	Grasslands Soil	MQSHGITLSFHREMADSSGELGGPDITAAVRFESYPRFIKGGFKDYKGLGIKRSTADSKHVPSPRSRLLG
Ga0066669_101665251	3300018482	Grasslands Soil	MQLHGITLSFHREMADSSRELVRPDGSAAVTLESYPRFIKGGFQDY
Ga0210403_110874061	3300020580	Soil	MQSHGIALSFHREMTDSSRELIGPDITGAVSFESYPRFIK
Ga0210406_100482741	3300021168	Soil	MQSHGITLTFHREMADSSRELVGPDITAAATLESYPRFIKGGFQDYER
Ga0210406_113776261	3300021168	Soil	MQLNGITLSFHREMADSSRELVGSDTSAAGGLESYPRFIEGGFQDYEGLGIKRSTADSKNVPSPR
Ga0210408_104590943	3300021178	Soil	MQSHGITLTFHREMADSSRELVGPDITAAATLESYPRFIKGGFQDYEGLGIKRSTADSKHVPSLR
Ga0210402_107300072	3300021478	Soil	MQSHGITLAFHREMADSSRELVGPDITAAVAFERYPRFIKGGFQDYEGL
Ga0126371_103030061	3300021560	Tropical Forest Soil	MQSHGITLSFHREMADSSRELVGPDITAAVSLESY
Ga0126371_106281773	3300021560	Tropical Forest Soil	MQPRGITLSFHREMADSSRELVGPDVSAAVSFESYPRFIK
Ga0126371_135852681	3300021560	Tropical Forest Soil	MQSLGITLSFHREMADSSRELVRLDGSAAVTLESYPSFIKGG
Ga0242654_103389641	3300022726	Soil	MQSQGITLSFYREMADSSRELVGPDIAAAVILERYPRFIKGGFQDYDGFGIKRSTADSKHVPSHD
Ga0207693_105229462	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	MQAHGITLPFHREMADSSRELVGPDGSAAASFESYPRFIK
Ga0257153_10666222	3300026490	Soil	MQSHGITLSFHREMADSSRELVGPDITAAVSFESYPRFIK
Ga0209474_100478474	3300026550	Soil	MQSHGITLSFHREMADSSRELVRPDITAAVSFESYPRFIKGGFQDYEGLGIKRSTADSKH
Ga0209488_106638051	3300027903	Vadose Zone Soil	MQSYGITLAFHREMADSSRELVGPDASAAVTFESYPRFIKGGFQDYEGLGIKRSTAYSK
Ga0209382_116920031	3300027909	Populus Rhizosphere	MQTHGITLSFHREMADSSRELVGPDISAAVTLKSYPRFIKGGFQDYE
Ga0137415_105512241	3300028536	Vadose Zone Soil	MQSHGITLSFHREMADSSGELGGPDITAAVRFESYPR
Ga0307292_102949293	3300028811	Soil	MQAHGITLPFHREMADSSRELVGPDITAAATLERD
Ga0307289_101636091	3300028875	Soil	MQSHGITLSFHREMADSSRELVGPDVSAAVSFESYPRFIKGGFQDYEGLGIKRSTADSKH
Ga0318534_101887843	3300031544	Soil	MQSRGITLSFHREMADSSRELVGPDVSAAVIFESYPRFI
Ga0318541_100984901	3300031545	Soil	MQSRGITLSFHREMADSSRELVGPDVSAAVIFESYPRFIKGGFQDYEGLGIKRSTADSKHVPSVRSR
Ga0318541_102125241	3300031545	Soil	MQSHGITLSFHREMADSARELVRLDGSAAVTLESYPRFIKGGFQDYEGLGIKRSTADSKHVPSI
Ga0318538_103158911	3300031546	Soil	MQSRGITLSFHCEMADSSRELVRLDGSAAVTLESYPRFIKGSFQDYEGLGIKRSTANSLALRLAVPR
Ga0318573_100856594	3300031564	Soil	MQSRGITLSFHREMADSSRELVGPDVSAAVIFESY
Ga0318573_105966151	3300031564	Soil	MQSHGITLSFHREMADSARELARLDGSAAVTLESYPRF
Ga0310915_107227441	3300031573	Soil	MQSRGITLSFHREMADSSRELVGPDVSAAVSFESYPRFIKGAFQDYEGLGIKRSTAD
Ga0318542_101651143	3300031668	Soil	MQSRGITLSFHREMADSSRELVGPDVSAAVIFESYPRFIKGGFQDYEGLGIKRSAADSKH
Ga0318572_102672871	3300031681	Soil	MQSRGITLSFHREMADSSRELVGPDVSAAVIFESYPRFIKGGFQDYEGLGIKRSTADSK
Ga0318501_106302351	3300031736	Soil	MQSHGITLAFHRKMADSSREFVGPDVIAAISLESYPRFIKGGFQD
Ga0318509_106869301	3300031768	Soil	MQSHGITLSFHREMADSARELVRLDGSAAVTLESYP
Ga0318546_104212321	3300031771	Soil	MQSRGITLSFHREMADSSRELVGPDVSAAVIFESYPRFIKGGFQDYEGLGIKRSAADSSHVP
Ga0318529_102589121	3300031792	Soil	MQSHGITLSFHREMADSARELVRLDGSAAVTLESYPRFIK
Ga0318517_103055341	3300031835	Soil	MQSHGITLAFHRKMADSSREFVGPDVIAAVSFESYPRFIKGRFQDCEGLGIERSTADSK
Ga0318517_104207231	3300031835	Soil	MQSHGITLSFHRKMADSSREFVGLDITAAVSLESYPRFIKGGFQDYE
Ga0306925_115255541	3300031890	Soil	MQSHGITLSFHREMADSSRELVGSDITAAVSLESYPRFIKGGFQD
Ga0306921_107764311	3300031912	Soil	MQSRGITLAFHRKMADSSREFVGPDVIAAISLESYPRFIKGGFQDYEGLWIKRSIADSKHVPSPRSRL
Ga0310916_100463401	3300031942	Soil	MQSRGITLSFHREMADSSRELVGPDVSAAVSFESYPRFIKGGFQDYEG
Ga0310910_110531893	3300031946	Soil	MQSHGITLSFHREMADSARELVRLDGSAAVTLESYPR
Ga0306926_103440304	3300031954	Soil	MQSHGITLSFHREMADSSRELGGPDITAAVSLESYPRFVKGGFQDYEGLGIKRPTADSKHFPYPRSR
Ga0306926_104024661	3300031954	Soil	MQSHGITLAFHRKMADSSREFVGPDVIAAVSLESYPRFIKGGFQDYEGLWIKRFIA
Ga0306926_116958231	3300031954	Soil	MQSHGITLSFHREMADSSRELVGSDFTAAVGLESYPRFIKSGFQDY
Ga0306922_100735331	3300032001	Soil	MQSHRITLSFHREMADSSRQLVWLDGSAAVTLESYPRFIKGGFQDYEGLGIKRST
Ga0318569_105940321	3300032010	Soil	MQSRGITLSFHREMADSSRELVGPDVSAAVIFESYPRFIKGGFQDYEGLGIK
Ga0318507_104775381	3300032025	Soil	MQSLGITLSFHREMADSSRELVRLDGSAAVTLESYPSFIKGGFQDYEGLG
Ga0318545_103184201	3300032042	Soil	MQSRGITLSFHREMADSSRELVGPDVSAAVIFESYPRFIKGGFQDYEGLGIKRSTADSKHVP
Ga0318532_103635562	3300032051	Soil	MQSHGITLSFHRKMADSSREFVGLDITAAVSLESYPRFIKGGFQDYEGL
Ga0318514_106687071	3300032066	Soil	MQSRGITLSFHREMADSSRELVGPDVSAAVIFESYPRFIKGGFQDYEGLGIKRSIADSKHVPSVRSRLPGQRLLEPPP
Ga0318553_100150934	3300032068	Soil	MQSRGITLSFHREMADSSRELVGPDVSAAVIFESYPRFIKGGFQDYEGLGIKRSTAD
Ga0318518_101540551	3300032090	Soil	MQSHGITLSFHRKMADSSREFVGLDITAAVSLESYPRFIKGGFQDYEGLWIKRPTADSKHVPSPR
Ga0307470_100581834	3300032174	Hardwood Forest Soil	MQSLGITLSFHREMADSSRELVGSDITAAVSLESYPRFIKGGFQDYEGLWI
Ga0307471_1000131317	3300032180	Hardwood Forest Soil	MQTHGITLSLHREMADSSRELGGSDITAAATLESYPRFIKGGFQDYEGLGIKRSTAD
Ga0306920_1038758901	3300032261	Soil	MQSRGITLSFHREMADSSRELVGPDVSAAVIFESYPRFIKGGFQDYEGLGIKRS
Ga0318519_110312561	3300033290	Soil	MQSHGITLSFHREMADSSRELVGSDISAAVGLESYPRFIEGGFQDYEGLRIKRSTAD

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F075229

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences