Metagenome / Metatranscriptome Family F075190

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F075190
Family Type	Metagenome / Metatranscriptome
Number of Sequences	119
Average Sequence Length	61 residues
Representative Sequence	MMLNRADECRQRADECRHNAAQVADDVLRGTYLDLARRWRMMAHQAESLEQKEETKKQAGWL
Number of Associated Samples	86
Number of Associated Scaffolds	119

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	84.48 %
% of genes near scaffold ends (potentially truncated)	57.14 %
% of genes from short scaffolds (< 2000 bps)	90.76 %
Associated GOLD sequencing projects	73
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.59

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (63.025 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (26.050 % of family members)
Environment Ontology (ENVO)	Unclassified (36.134 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (47.059 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 63.33% β-sheet: 0.00% Coil/Unstructured: 36.67%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.59
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.59
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 119 Family Scaffolds
PF09917	DUF2147	19.33
PF04828	GFA	2.52
PF04234	CopC	1.68
PF00188	CAP	1.68
PF06186	DUF992	1.68
PF00072	Response_reg	0.84
PF04311	DUF459	0.84
PF13531	SBP_bac_11	0.84
PF09851	SHOCT	0.84
PF13565	HTH_32	0.84
PF04392	ABC_sub_bind	0.84
PF11752	DUF3309	0.84
PF00346	Complex1_49kDa	0.84
PF00916	Sulfate_transp	0.84
PF03595	SLAC1	0.84
PF03176	MMPL	0.84
PF13683	rve_3	0.84
PF02798	GST_N	0.84

COG ID	Name	Functional Category	% Frequency in 119 Family Scaffolds
COG3791	Uncharacterized conserved protein	Function unknown [S]	2.52
COG2340	Spore germination protein YkwD and related proteins with CAP (CSP/antigen 5/PR1) domain	Cell cycle control, cell division, chromosome partitioning [D]	1.68
COG2372	Copper-binding protein CopC (methionine-rich)	Inorganic ion transport and metabolism [P]	1.68
COG0649	NADH:ubiquinone oxidoreductase 49 kD subunit (chain D)	Energy production and conversion [C]	0.84
COG0659	Sulfate permease or related transporter, MFS superfamily	Inorganic ion transport and metabolism [P]	0.84
COG1033	Predicted exporter protein, RND superfamily	General function prediction only [R]	0.84
COG1275	Tellurite resistance protein TehA and related permeases	Defense mechanisms [V]	0.84
COG2233	Xanthine/uracil permease	Nucleotide transport and metabolism [F]	0.84
COG2252	Xanthine/guanine/uracil/vitamin C permease GhxP/GhxQ, nucleobase:cation symporter 2 ( NCS2) family	Nucleotide transport and metabolism [F]	0.84
COG2409	Predicted lipid transporter YdfJ, MMPL/SSD domain, RND superfamily	General function prediction only [R]	0.84
COG2845	Peptidoglycan O-acetyltransferase, SGNH hydrolase family	Cell wall/membrane/envelope biogenesis [M]	0.84
COG2984	ABC-type uncharacterized transport system, periplasmic component	General function prediction only [R]	0.84
COG3261	Ni,Fe-hydrogenase III large subunit	Energy production and conversion [C]	0.84

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	63.03 %
All Organisms	root	All Organisms	36.97 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	63.03 %
cellular organisms	root	All Organisms → cellular organisms	36.97 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	63.03 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	36.97 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	63.03 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	31.93 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	1.68 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	63.03 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	14.29 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	1.68 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.84 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	63.03 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	10.92 %
Candidatus Acidoferrales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales	1.68 %
Xanthomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales	0.84 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	63.03 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	4.20 %
Candidatus Acidoferrum	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum	1.68 %
Hyphomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	0.84 %
Xanthomonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae	0.84 %
Devosiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Devosiaceae	0.84 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	63.03 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	4.20 %
Candidatus Acidoferrum panamensis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	1.68 %
unclassified Xanthomonadaceae	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae → unclassified Xanthomonadaceae	0.84 %
Devosia	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Devosiaceae → Devosia	0.84 %
Rhodoplanes	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes	0.84 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	63.03 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	4.20 %
Candidatus Acidoferrum panamensis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	1.68 %
unclassified Rhodoplanes	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes	0.84 %
Xanthomonadaceae bacterium SCN 69-123	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae → unclassified Xanthomonadaceae → Xanthomonadaceae bacterium SCN 69-123	0.84 %
Devosia psychrophila	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Devosiaceae → Devosia → Devosia psychrophila	0.84 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	63.03 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	4.20 %
Candidatus Acidoferrum panamensis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	1.68 %
Rhodoplanes sp. JGI PP 4-B12	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. JGI PP 4-B12	0.84 %
Xanthomonadaceae bacterium SCN 69-123	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae → unclassified Xanthomonadaceae → Xanthomonadaceae bacterium SCN 69-123	0.84 %
Devosia psychrophila	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Devosiaceae → Devosia → Devosia psychrophila	0.84 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000655\|AF_2010_repII_A100DRAFT_1027022	Not Available	1068	Open in IMG/M
3300003351\|JGI26346J50198_1009929	All Organisms → cellular organisms → Bacteria → Proteobacteria	916	Open in IMG/M
3300003505\|JGIcombinedJ51221_10017142	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	2487	Open in IMG/M
3300004152\|Ga0062386_100735366	Not Available	811	Open in IMG/M
3300005332\|Ga0066388_102107612	Not Available	1015	Open in IMG/M
3300005436\|Ga0070713_100631876	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1019	Open in IMG/M
3300005439\|Ga0070711_100470969	Not Available	1031	Open in IMG/M
3300005468\|Ga0070707_102335960	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	502	Open in IMG/M
3300005554\|Ga0066661_10096166	Not Available	1764	Open in IMG/M
3300005598\|Ga0066706_10271592	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1326	Open in IMG/M
3300005764\|Ga0066903_101826237	Not Available	1162	Open in IMG/M
3300005764\|Ga0066903_106358001	All Organisms → cellular organisms → Bacteria	616	Open in IMG/M
3300005764\|Ga0066903_107581484	Not Available	559	Open in IMG/M
3300005764\|Ga0066903_108024254	Not Available	541	Open in IMG/M
3300005764\|Ga0066903_108584422	Not Available	520	Open in IMG/M
3300006047\|Ga0075024_100566483	All Organisms → cellular organisms → Bacteria → Proteobacteria	606	Open in IMG/M
3300006052\|Ga0075029_100288685	All Organisms → cellular organisms → Bacteria → Proteobacteria	1044	Open in IMG/M
3300006059\|Ga0075017_100326899	All Organisms → cellular organisms → Bacteria → Proteobacteria	1137	Open in IMG/M
3300006059\|Ga0075017_101458573	Not Available	539	Open in IMG/M
3300006102\|Ga0075015_100136597	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1265	Open in IMG/M
3300006162\|Ga0075030_101045222	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	643	Open in IMG/M
3300006174\|Ga0075014_100963278	All Organisms → cellular organisms → Bacteria → Proteobacteria	515	Open in IMG/M
3300009137\|Ga0066709_100898382	Not Available	1291	Open in IMG/M
3300010361\|Ga0126378_11286047	Not Available	827	Open in IMG/M
3300012198\|Ga0137364_10800609	Not Available	712	Open in IMG/M
3300012199\|Ga0137383_10637747	All Organisms → cellular organisms → Bacteria → Proteobacteria	779	Open in IMG/M
3300012200\|Ga0137382_10346723	All Organisms → cellular organisms → Bacteria → Proteobacteria	1041	Open in IMG/M
3300012211\|Ga0137377_10171075	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. JGI PP 4-B12	2084	Open in IMG/M
3300012356\|Ga0137371_10699129	Not Available	775	Open in IMG/M
3300012357\|Ga0137384_11581264	Not Available	505	Open in IMG/M
3300012359\|Ga0137385_10463640	Not Available	1075	Open in IMG/M
3300016270\|Ga0182036_10174172	Not Available	1554	Open in IMG/M
3300016270\|Ga0182036_10823578	Not Available	757	Open in IMG/M
3300016319\|Ga0182033_10295081	Not Available	1336	Open in IMG/M
3300016319\|Ga0182033_10942831	Not Available	766	Open in IMG/M
3300016319\|Ga0182033_11057642	Not Available	724	Open in IMG/M
3300016341\|Ga0182035_10119814	All Organisms → cellular organisms → Bacteria	1966	Open in IMG/M
3300016341\|Ga0182035_11335909	Not Available	642	Open in IMG/M
3300016341\|Ga0182035_11975242	Not Available	530	Open in IMG/M
3300016357\|Ga0182032_10668712	Not Available	869	Open in IMG/M
3300016371\|Ga0182034_11017372	Not Available	716	Open in IMG/M
3300016371\|Ga0182034_11486600	Not Available	593	Open in IMG/M
3300016387\|Ga0182040_10134553	All Organisms → cellular organisms → Bacteria	1738	Open in IMG/M
3300016387\|Ga0182040_10343193	Not Available	1155	Open in IMG/M
3300016422\|Ga0182039_10174518	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1690	Open in IMG/M
3300016422\|Ga0182039_11466038	Not Available	621	Open in IMG/M
3300016422\|Ga0182039_11874673	Not Available	550	Open in IMG/M
3300016445\|Ga0182038_10491408	Not Available	1045	Open in IMG/M
3300016445\|Ga0182038_11399963	Not Available	626	Open in IMG/M
3300017822\|Ga0187802_10033519	All Organisms → cellular organisms → Bacteria → Proteobacteria	1833	Open in IMG/M
3300017822\|Ga0187802_10347649	Not Available	582	Open in IMG/M
3300017924\|Ga0187820_1001718	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	4976	Open in IMG/M
3300017930\|Ga0187825_10167348	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	782	Open in IMG/M
3300017932\|Ga0187814_10138399	All Organisms → cellular organisms → Bacteria → Proteobacteria	906	Open in IMG/M
3300017937\|Ga0187809_10226867	Not Available	670	Open in IMG/M
3300017942\|Ga0187808_10383040	Not Available	641	Open in IMG/M
3300017955\|Ga0187817_10207621	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Devosiaceae → Devosia → Devosia psychrophila	1248	Open in IMG/M
3300017961\|Ga0187778_10321823	All Organisms → cellular organisms → Bacteria	1003	Open in IMG/M
3300017993\|Ga0187823_10086425	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	918	Open in IMG/M
3300017995\|Ga0187816_10219860	All Organisms → cellular organisms → Bacteria → Proteobacteria	827	Open in IMG/M
3300018007\|Ga0187805_10078397	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1489	Open in IMG/M
3300018007\|Ga0187805_10577730	Not Available	530	Open in IMG/M
3300018433\|Ga0066667_10502543	All Organisms → cellular organisms → Bacteria → Proteobacteria	999	Open in IMG/M
3300020580\|Ga0210403_10103829	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	2305	Open in IMG/M
3300021560\|Ga0126371_10087969	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	3065	Open in IMG/M
3300021560\|Ga0126371_10668916	Not Available	1187	Open in IMG/M
3300025915\|Ga0207693_10973651	Not Available	649	Open in IMG/M
3300027039\|Ga0207855_1041405	Not Available	622	Open in IMG/M
3300027047\|Ga0208730_1047764	Not Available	504	Open in IMG/M
3300027783\|Ga0209448_10001294	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	7673	Open in IMG/M
3300027846\|Ga0209180_10747670	Not Available	528	Open in IMG/M
3300027898\|Ga0209067_10485870	Not Available	700	Open in IMG/M
3300027898\|Ga0209067_10676624	All Organisms → cellular organisms → Bacteria → Proteobacteria	597	Open in IMG/M
3300027911\|Ga0209698_10698181	All Organisms → cellular organisms → Bacteria → Proteobacteria	773	Open in IMG/M
3300027915\|Ga0209069_10713455	All Organisms → cellular organisms → Bacteria → Proteobacteria	590	Open in IMG/M
3300027915\|Ga0209069_10745322	Not Available	580	Open in IMG/M
3300030916\|Ga0075386_12177373	Not Available	595	Open in IMG/M
3300030935\|Ga0075401_11797446	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae → unclassified Xanthomonadaceae → Xanthomonadaceae bacterium SCN 69-123	1344	Open in IMG/M
3300030967\|Ga0075399_11329898	All Organisms → cellular organisms → Bacteria → Proteobacteria	603	Open in IMG/M
3300031057\|Ga0170834_102141605	All Organisms → cellular organisms → Bacteria → Proteobacteria	787	Open in IMG/M
3300031231\|Ga0170824_108568213	All Organisms → cellular organisms → Bacteria → Proteobacteria	1084	Open in IMG/M
3300031231\|Ga0170824_112510907	Not Available	1259	Open in IMG/M
3300031231\|Ga0170824_117213852	Not Available	566	Open in IMG/M
3300031231\|Ga0170824_119364221	Not Available	1123	Open in IMG/M
3300031446\|Ga0170820_16186334	Not Available	1468	Open in IMG/M
3300031474\|Ga0170818_102857817	Not Available	1151	Open in IMG/M
3300031474\|Ga0170818_105107429	Not Available	1345	Open in IMG/M
3300031474\|Ga0170818_106493519	Not Available	871	Open in IMG/M
3300031545\|Ga0318541_10007092	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	4834	Open in IMG/M
3300031681\|Ga0318572_10707156	Not Available	600	Open in IMG/M
3300031708\|Ga0310686_101045891	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	5533	Open in IMG/M
3300031708\|Ga0310686_102994042	Not Available	1079	Open in IMG/M
3300031708\|Ga0310686_111162797	All Organisms → cellular organisms → Bacteria → Proteobacteria	524	Open in IMG/M
3300031719\|Ga0306917_11236439	Not Available	579	Open in IMG/M
3300031724\|Ga0318500_10429744	Not Available	659	Open in IMG/M
3300031736\|Ga0318501_10428468	Not Available	717	Open in IMG/M
3300031744\|Ga0306918_10681442	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	804	Open in IMG/M
3300031748\|Ga0318492_10527002	Not Available	628	Open in IMG/M
3300031798\|Ga0318523_10362921	Not Available	721	Open in IMG/M
3300031879\|Ga0306919_10895022	Not Available	681	Open in IMG/M
3300031890\|Ga0306925_11117913	Not Available	795	Open in IMG/M
3300031890\|Ga0306925_11919823	Not Available	562	Open in IMG/M
3300031890\|Ga0306925_12276345	Not Available	501	Open in IMG/M
3300031910\|Ga0306923_11065624	All Organisms → cellular organisms → Bacteria → Proteobacteria	873	Open in IMG/M
3300031912\|Ga0306921_10939140	Not Available	979	Open in IMG/M
3300031941\|Ga0310912_11116929	Not Available	602	Open in IMG/M
3300031942\|Ga0310916_10716193	All Organisms → cellular organisms → Bacteria → Proteobacteria	846	Open in IMG/M
3300031954\|Ga0306926_12393533	Not Available	582	Open in IMG/M
3300031954\|Ga0306926_12465973	Not Available	571	Open in IMG/M
3300031981\|Ga0318531_10178790	Not Available	954	Open in IMG/M
3300031981\|Ga0318531_10259979	Not Available	784	Open in IMG/M
3300032076\|Ga0306924_12452463	Not Available	524	Open in IMG/M
3300032090\|Ga0318518_10302570	Not Available	821	Open in IMG/M
3300032205\|Ga0307472_101057611	Not Available	765	Open in IMG/M
3300032261\|Ga0306920_103199788	Not Available	613	Open in IMG/M
3300033290\|Ga0318519_10129451	Not Available	1390	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	76.47%
Aquatic	Environmental → Aquatic	23.53%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	76.47%
Freshwater	Environmental → Aquatic → Freshwater	13.45%
Sediment	Environmental → Aquatic → Sediment	10.08%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	64.71%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	13.45%
Loam	Environmental → Terrestrial → Soil → Loam	10.92%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	10.08%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	0.84%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	49.58%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	11.76%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	10.92%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	10.08%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	7.56%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	3.36%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	3.36%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	2.52%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	0.84%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	26.05%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	13.45%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	10.92%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	10.08%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	9.24%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	6.72%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	5.88%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	3.36%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	2.52%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	2.52%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	2.52%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	1.68%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	1.68%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	1.68%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.84%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	0.84%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000655	Forest soil microbial communities from Amazon forest - 2010 replicate II A100	Environmental	Open in IMG/M
3300003351	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP14_OM2	Environmental	Open in IMG/M
3300003505	Forest soil microbial communities from Harvard Forest LTER, USA - Combined assembly of forest soil metaG samples (ASSEMBLY_DATE=20140924)	Environmental	Open in IMG/M
3300004152	Coassembly of ECP12_OM1, ECP12_OM2, ECP12_OM3	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental	Open in IMG/M
3300005439	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG	Environmental	Open in IMG/M
3300005468	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG	Environmental	Open in IMG/M
3300005554	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_110	Environmental	Open in IMG/M
3300005598	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_155	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006047	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2013	Environmental	Open in IMG/M
3300006052	Freshwater sediment microbial communities from North America - Little Laurel Run_MetaG_LLR_2013	Environmental	Open in IMG/M
3300006059	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2012	Environmental	Open in IMG/M
3300006102	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2013	Environmental	Open in IMG/M
3300006162	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2012	Environmental	Open in IMG/M
3300006174	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2014	Environmental	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300012198	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_20_16 metaG	Environmental	Open in IMG/M
3300012199	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_40_16 metaG	Environmental	Open in IMG/M
3300012200	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_20_16 metaG	Environmental	Open in IMG/M
3300012211	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_40_16 metaG	Environmental	Open in IMG/M
3300012356	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_40_16 metaG	Environmental	Open in IMG/M
3300012357	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_60_16 metaG	Environmental	Open in IMG/M
3300012359	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_80_16 metaG	Environmental	Open in IMG/M
3300016270	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080	Environmental	Open in IMG/M
3300016319	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H	Environmental	Open in IMG/M
3300016341	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170	Environmental	Open in IMG/M
3300016357	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000	Environmental	Open in IMG/M
3300016371	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172	Environmental	Open in IMG/M
3300016387	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176	Environmental	Open in IMG/M
3300016422	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111	Environmental	Open in IMG/M
3300016445	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108	Environmental	Open in IMG/M
3300017822	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_2	Environmental	Open in IMG/M
3300017924	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_5	Environmental	Open in IMG/M
3300017930	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SourceSoil_5	Environmental	Open in IMG/M
3300017932	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW-S_4	Environmental	Open in IMG/M
3300017937	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_4	Environmental	Open in IMG/M
3300017942	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_3	Environmental	Open in IMG/M
3300017943	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_4	Environmental	Open in IMG/M
3300017955	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_2	Environmental	Open in IMG/M
3300017961	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP5_20_MG	Environmental	Open in IMG/M
3300017993	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SourceSoil_3	Environmental	Open in IMG/M
3300017995	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_1	Environmental	Open in IMG/M
3300018007	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_5	Environmental	Open in IMG/M
3300018433	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116	Environmental	Open in IMG/M
3300020580	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300025915	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300027039	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 14 (SPAdes)	Environmental	Open in IMG/M
3300027047	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF042 (SPAdes)	Environmental	Open in IMG/M
3300027783	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP14_OM2 (SPAdes)	Environmental	Open in IMG/M
3300027846	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027898	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2013 (SPAdes)	Environmental	Open in IMG/M
3300027911	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2012 (SPAdes)	Environmental	Open in IMG/M
3300027915	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2013 (SPAdes)	Environmental	Open in IMG/M
3300030916	Forest soil microbial communities from France for metatranscriptomics studies - Site 11 - Champenoux / Amance forest - FA12 EcM (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300030935	Forest soil microbial communities from France for metatranscriptomics studies - Site 11 - Champenoux / Amance forest - OA7 SO (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300030967	Forest soil microbial communities from France for metatranscriptomics studies - Site 11 - Champenoux / Amance forest - FA11 Emin (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300031057	Oak Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031446	Fir Summer Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031474	Fir Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031545	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f26	Environmental	Open in IMG/M
3300031681	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f20	Environmental	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300031719	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2)	Environmental	Open in IMG/M
3300031724	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f20	Environmental	Open in IMG/M
3300031736	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f21	Environmental	Open in IMG/M
3300031744	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)	Environmental	Open in IMG/M
3300031748	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f22	Environmental	Open in IMG/M
3300031798	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f19	Environmental	Open in IMG/M
3300031879	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2)	Environmental	Open in IMG/M
3300031890	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental	Open in IMG/M
3300031941	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX080	Environmental	Open in IMG/M
3300031942	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF176	Environmental	Open in IMG/M
3300031954	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)	Environmental	Open in IMG/M
3300031981	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f25	Environmental	Open in IMG/M
3300032076	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)	Environmental	Open in IMG/M
3300032090	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f22	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300033290	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f15	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
AF_2010_repII_A100DRAFT_10270221	3300000655	Forest Soil	MVPNRASECRQRADECRRGAAQAADDVLRVTYLDLARRWRKMAHEAESLER
JGI26346J50198_10099292	3300003351	Bog Forest Soil	MMVNRADECRQRADECRRNAGQEVDDVLRGTYLDLARLWRMMAHQAESLEQKEETKKQAGWLEIAKTNLLAIVR*
JGIcombinedJ51221_100171423	3300003505	Forest Soil	MMLNHADECRKRADECLRDAAQVADDVLRETYLDLARRWRMMAHKAELFEQKKERKKQVSWLYVAKTNLFALVR*
Ga0062386_1007353662	3300004152	Bog Forest Soil	TKRVKMDADQCAAWGTTTMMLNSADECRQRADECRRKAAQVADDALRGTYLDLARRWHMMAHQAESLEQKEETKKQADWLQIAKTNLLAIVR*
Ga0066388_1021076123	3300005332	Tropical Forest Soil	MALNRPDECRQRADECRRSAAQVADDVLRETYLDLARRWRMMAHEAE
Ga0070713_1006318761	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	MMLNRADECRKRADECRRNAAQVADDVLRGTYLDLARRWRM
Ga0070711_1004709692	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	MMLNHADECRKRADECLRDAAQVADDVLRETYLDLARRWRMMAHQVEPLEQKEETKKQSG
Ga0070707_1023359601	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	SKAAWGRSTMMVNRADEYRQMADECRRNAAQAADDVLRGTYLDLARRWRMMANQAESLEQKVETKKQAGWL*
Ga0066661_100961664	3300005554	Soil	MMLNRADEYRQRADECRRNAAQAADDVLRGTYLDLARRWRMMANQAE
Ga0066706_102715922	3300005598	Soil	MMLNRADECRQRADECRHNAAQVADDVLRGTYLDLARRWRMMANQAESLEQKEETKKQAGWL*
Ga0066903_1018262373	3300005764	Tropical Forest Soil	MILNGADECRQKADECRRNAAQVADDVLRATYLDLARRWCMMAHQAESLEQKVPRLKTNAPR*
Ga0066903_1063580012	3300005764	Tropical Forest Soil	MALNRADECRQRADECRRCAAETADDVLRVTYIDLARLWRMMAQEAESMERKAVGPTKPILRGLAPAEPRRRRPF*
Ga0066903_1075814841	3300005764	Tropical Forest Soil	MVLNRADECRQRADECRRSAAQVADEVLRVTYLDLARRWRKMAHEAELLERKAV
Ga0066903_1080242542	3300005764	Tropical Forest Soil	MVLNRADECRQRADECRRGAARAADDVLRITYLDLARRWRKMAHEAESLERKALAPTKPI
Ga0066903_1085844222	3300005764	Tropical Forest Soil	MVLNRADECRQRADECRRGAVQAADDVLRVTYLDLARRWRKMAHEAESLERKA
Ga0075024_1005664832	3300006047	Watersheds	MMLNRADECWRRADECRRSAAEVADDVLRGTYLDLARRWRMMAHQAESLEQKEETKKQAGWL*
Ga0075029_1002886852	3300006052	Watersheds	MMLNRADECRQRADECRHNAAQVADDVLRGMYLDLAHRWRMMAHQAEQKEETK*
Ga0075017_1003268992	3300006059	Watersheds	MMLNRADECRQRADECRHNAAEVADDVLRGTYLDLARRWRMMAHQAEALEQKKQAGWL*
Ga0075017_1014585733	3300006059	Watersheds	MMFNRADEYRRRAEECRRNATQVADDVLRGTYLDLARRWRMMAH
Ga0075015_1001365972	3300006102	Watersheds	MYGLGGRTTMMLNRADEYRQRADECRRNAAQAADDVLRGTYLDLARRWGMMANQAESLEQKEETKKQAGWL*
Ga0075030_1010452222	3300006162	Watersheds	MVNRADEYRQRADECRRNAAQAADDVLRGTYLDLARRWRMMANQAESLEQKEETKKQAGWL*
Ga0075014_1009632782	3300006174	Watersheds	RSTMMLNRADECRQRADECRHNAAEVADDVLRGTYLDLARRWRMMAHQAEALEQKKQAGWL*
Ga0066709_1008983821	3300009137	Grasslands Soil	MMLNRADECRQRADECRHNAAQVTDDVLRGTYLDLAHRWRTMAQQAESLEQKEETKKASLLAVN
Ga0126378_112860471	3300010361	Tropical Forest Soil	MVLNRADECRQRADECRRGAAQAADDVLRVTYLDLARRWRKMAHEAES
Ga0137364_108006091	3300012198	Vadose Zone Soil	MMLNRADECRQRADECRHNAAQVTDDVLRGTYLDLAHRWRTMAQQAESLEQKKERQKKQADWL*
Ga0137383_106377473	3300012199	Vadose Zone Soil	MMPNRADECRQRADECRRKAAQVADDVLRGTYLDLARRWRMMAHQAESLEQKEETKKQAGWL*
Ga0137382_103467232	3300012200	Vadose Zone Soil	MMLNRADECRQRADECRHNAAQVADDVLRGTYLDLARRWRMMAHQAESLEQKEETKKQAGWL*
Ga0137377_101710754	3300012211	Vadose Zone Soil	MFGRSPGGLVMSDSELNRADECRQRADECRHNAAQVADDVLRGTYLDLARRWRMMAHQAESLEQKEETKKQAGWL*
Ga0137371_106991291	3300012356	Vadose Zone Soil	MAAWGRSTMMLNRADECRQRADECRRNAAQVADDVLRGTYLDLARRWRMMAHQAESLEQKKERQKKQADWL*
Ga0137384_115812641	3300012357	Vadose Zone Soil	MLNRADECRRRADECRRNAAEVTDDVLRGTYLDLAHRWRTMAQQAESLEQKEETKKASLLAVNGEDQFAR
Ga0137385_104636402	3300012359	Vadose Zone Soil	MLNRADECRRRADECRRNAAEVTDDVLRGTYLDLAHRWRTIAQQAESLKQKEETKKASLLAV
Ga0182036_101741723	3300016270	Soil	MVLNRADECRQRADECRRGDARAADDVLRVTYLDLARRWREMAHKAESLERNAMAPNETN
Ga0182036_108235781	3300016270	Soil	MVLNRADECRQRADECRRGAAQAADDVLRVTYLDLARRWRKMAHEAESLERKAM
Ga0182033_102950813	3300016319	Soil	MVLNRADECRQRADECRSGAAQAADDVLRVTYLDLARRWRKMAHE
Ga0182033_109428312	3300016319	Soil	MVLNPADECRQRADECRRSAAQVTDDVLRVTYLDLARRWRMMAHQAES
Ga0182033_110576422	3300016319	Soil	MVLNRADECRQRADECRRGAAQAADDVLRVTYLDLARRWRKMAHEAESLERKAMAPTK
Ga0182035_101198142	3300016341	Soil	MMLNRSDECRQRANECRHNAAQLADDALRGTYLDLARRWSMMAHQAESLEKKGETKKT
Ga0182035_113359091	3300016341	Soil	MVRNRADECRQRADECRRSAAQVADDVLRVTYLDLARRWRTMAHEAESLERKAMGPTK
Ga0182035_119752421	3300016341	Soil	MVLNRADECRQRADECRRGAAQAADDVLRVTYLDLAHRWRKMAHEAESLERKAAGP
Ga0182032_106687122	3300016357	Soil	MVLNRADECRQRADECRRGAAQAADDVLRVTYLDLARRWRKMAHEAESLERKAMAPTKRI
Ga0182034_110173721	3300016371	Soil	MVLNRADECRQRADECRRGAAQAADDVLRVTYLDLARRWRKMAHEAE
Ga0182034_114866001	3300016371	Soil	MMLNRADECRQRANECRREAAQVADHVLRLTYLDLAHRWRMMAHQAESLE
Ga0182040_101345534	3300016387	Soil	MVLNRADECRQRADECRRGAAQAVDDVLRVTYLDLARRWRKMAHEAESLER
Ga0182040_103431931	3300016387	Soil	MVLNRADECRQRADECRRNAAQLVADDALRGAYLDLARLWRKMAHEAESLERKAAGQT
Ga0182039_101745184	3300016422	Soil	MVLNRADECRQRAEECRRGAAQAADDVLRVTYLDLARRWRKMAHEAESLERKAM
Ga0182039_102371623	3300016422	Soil	MVLNRADECRQRADECRSGAAQAADDVLRVTYLDLARRWRKMA
Ga0182039_114660381	3300016422	Soil	MVLNRADECRQRADECRRNAAQLLADDVLREAYLDLARLWRKMAHQAQQKEFGSN
Ga0182039_118746732	3300016422	Soil	MVLNRADECRQRADECRRAAAQAADDVLRVTYLDLARRWRKMAHEAESLERKAMAPTKPI
Ga0182038_104914084	3300016445	Soil	MVLNRADECRRRADECRRGAAQAADDVLRVTYLDLARRWRKMAHEAESLERK
Ga0182038_113999631	3300016445	Soil	MVRNRADECRQRADECRRSAAHVADDVLRETYLDLARRWRTMAHEAESLERKAMGPT
Ga0187802_100335192	3300017822	Freshwater Sediment	MPLNVLPGGRSNMRVNRADEYRQRADECRRNAGQVADNVLRGTYLDLARRWRMMAHQVESLEQKEETKKQAGWLEIAKTNLLAIVR
Ga0187802_103476491	3300017822	Freshwater Sediment	MMLNADEYRQRADECRRNAAQAADDVLRGTYLDLARRWCMMANQAESLEQKEETKKQAGW
Ga0187820_10017182	3300017924	Freshwater Sediment	MRVNRADEYRQRADECRRNAGQVADNVLRGTYLDLARRWRMMAHQVESLEQKEETKKQAGWLEIAKTNLLAIVR
Ga0187825_101673481	3300017930	Freshwater Sediment	MRVNRADEYRQRADECRRNAGQVADNVLRGTYLDLARRWRMMAYQAESLEQKEETKKQAGWLEIAKTNLLAIVR
Ga0187814_101383992	3300017932	Freshwater Sediment	MMVNRADEYRQRADECRRNAAQAADDVLRGTYLDLARRWRMMANQAESLEQKEETKKQAGWLQIAKTRSAF
Ga0187809_102268671	3300017937	Freshwater Sediment	MMLNRADECRQRADECRRNAAQVVADDVLRGAYLDLARLWRKMARQAEQKEIGSNT
Ga0187808_103830401	3300017942	Freshwater Sediment	MPLNVLPGGRSNMRVNRADEYRQRAEECRRNAGQVADNVLRGTYLDLARRWRMMAHQVESLEQKEETKKQAGWLEIAKTNLLAIVR
Ga0187819_101380181	3300017943	Freshwater Sediment	MMLNRADECRQRADECRHNAAQVADDVLRGTYLDLARRWRMIAHQAGSLEQKEGTKKTRGFRIRLL
Ga0187817_102076212	3300017955	Freshwater Sediment	MLNADEYRQRADECRRNAAQAADDVLRGTYLDLARRWCMMANQAESLEQKEETKKQAGWL
Ga0187778_103218232	3300017961	Tropical Peatland	MMLNHADECRQRADECRRNASQLDDDVLRGAYLDLARRWRKMAHQAQQKE
Ga0187823_100864252	3300017993	Freshwater Sediment	MRVNRADEYRQRADECRRNAGQVADNVLRGTYLDLARRWRMMAHQ
Ga0187816_102198602	3300017995	Freshwater Sediment	MRVNRADEYRQRAEECRRNAGQVADNVLRGTYLDLARRWRMMAHQVESLEQKEETKKQAGWLEIAKTNLLAIVR
Ga0187805_100783972	3300018007	Freshwater Sediment	MMVNRADEYRQRADECRRNAAQAADDVLRGTYLDLARRWCMMANQAESLEQKEETKKQAGWLQIAKTRSAF
Ga0187805_105777302	3300018007	Freshwater Sediment	MLNRADECRRRADECRRNAAQVAEDVLPGTYLDLARRWRMMAHQAETLEQKVLGSNDVPH
Ga0066667_105025432	3300018433	Grasslands Soil	MVVGSGLPGETCENGCPIDVRPGGRTTMMLNRADEYRQRADECRRNAAQAADDVLRGTYLDLARRWRMMANQAEPLEQKEETKKQAGWL
Ga0210403_101038293	3300020580	Soil	MMLNHADECRKRADECLRDAAQVADDVLRETYLDLARRWRMMAHKAELFEQKKERKKQVSWLYVAKTNLFALVR
Ga0126371_100879692	3300021560	Tropical Forest Soil	MALNRADECRQRADECRRCAAETADDVLRVTYIDLARLWRMMAQEAESMERKAVGPTKPILRGLAPAEPRRRRPF
Ga0126371_106689161	3300021560	Tropical Forest Soil	MVPNRASECRQRADECRRGAAQAADDVLRVTYLDLARRWRKMAHEAE
Ga0207693_109736511	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	MMLNHADECRKRADECLRDAAQVADDVLRETYLDLARRWRMMAHKAELFEQKKERKKQVSWLYVAKTNLSALVR
Ga0207855_10414052	3300027039	Tropical Forest Soil	MVLNRADECRQRADECRRSAAQAADDVLRVTYLDLARRWRMMAHEAESMERKPMGPTKP
Ga0208730_10477641	3300027047	Forest Soil	MAGDSSLPSQTCKNGCGGRSTMMLNHADECRKRADECLRDAAQVADDVLRETYLDLARRWRMMAHKAELFEQKKERKKQVSWLYVAKTNLFALVR
Ga0209448_100012948	3300027783	Bog Forest Soil	MMVNRADECRQRADECRRNAGQEVDDVLRGTYLDLARLWRMMAHQAESLEQKEETKKQAGWLEIAKTNLLAIVR
Ga0209180_107476701	3300027846	Vadose Zone Soil	MMLNRADECRQRADECRHNAAQVADDVLRGTYLDLARRWRMMAHQANSLEQKEETK
Ga0209067_104858701	3300027898	Watersheds	MMLNRADECRQRADECRHNAAQVADDVLRGMYLDLAHRWRMMAHQAEQKEETK
Ga0209067_106766242	3300027898	Watersheds	MMLNRADECRQRADECRHNAAEVADDVLRGTYLDLARRWRMMAHQAEALEQKKQAGWL
Ga0209698_106981812	3300027911	Watersheds	MMVNRADEYRQRADECRRNAAQAADDVLRGTYLDLARRWRMMANQAESLEQKEETKKQAGWL
Ga0209069_107134552	3300027915	Watersheds	MTVNRADEYRQRADECRRNAAQAADDVLRGTYLDLARRWRMMAHQAESLEQKEETKKQAGWL
Ga0209069_107453221	3300027915	Watersheds	VVLNRADECRQRADECRCSAAQVADDVLRVTYLDLARRWRIMAHEAESLERKA
Ga0075386_121773731	3300030916	Soil	MMLNRADECRQRADECRHNAAQVADDVLRGTYLDLARRWRMMANQAESLEQKEETKKQAGWL
Ga0075401_117974461	3300030935	Soil	MMLNRADEYRQRADECRRNAAQAADDVLRGTYLDLARRWRMMANQAEVLEQKEETKN
Ga0075399_113298981	3300030967	Soil	MMLNRADECRQRADECRHNAAQVADDVLRGTYLDLARRWRMMAHQAESLEQKEETKKQAGWL
Ga0170834_1021416052	3300031057	Forest Soil	MMLNRADEYRQRADECRRNAAQAADDVLRGTYLDLARRWRMMANQAEPLKQKEETKKQAGWL
Ga0170824_1085682131	3300031231	Forest Soil	MMLNRADEYRQRADECRRNAAQAADDVLRGTYLDLARRWRMMASQAESLEQKEETKKQAGWL
Ga0170824_1125109073	3300031231	Forest Soil	MPIDVRPGGRTTMMLNRADEYRQRADECRRNAAQAADDVLRGTYLDLARRWRMMANQAEPLKQKEETKKQAGWL
Ga0170824_1172138521	3300031231	Forest Soil	MMLNRADECRQRADECRHNAAQVADDVLRGTYLDLARRWRMMANQAESL
Ga0170824_1193642211	3300031231	Forest Soil	MMPNRADECRQRADECRRNAAQVADDVLRGTYLDLARRWRMLAHKAELLEQKK
Ga0170820_161863341	3300031446	Forest Soil	MPIDVRPGGRTTMMLNRADEYRQRADECRRNAAQAADDVLRGTYLDLARRWRMMASQAESLEQKEETKKQAGWL
Ga0170818_1028578172	3300031474	Forest Soil	MMLNRADECRQRADECRHNAAQVADDVLRGTYLDLARRWRMMAHQANSLEQKEETKKASLLAVNGEDQFARRCP
Ga0170818_1051074293	3300031474	Forest Soil	MMLNRADEYRQRADECRRNAAQAADDVLRGTYLDLARRWRMMANQAEP
Ga0170818_1064935191	3300031474	Forest Soil	MMLNRADECWRRADECRRNAAQVADDVLRGTYLDLARRWRMMAHQAGSR
Ga0170818_1120815641	3300031474	Forest Soil	MDGINAAWGRSTMMPNRADECRQRADECRQNAAQVTDDVLRGAYLDLARRWRMMANQAEA
Ga0318541_100070921	3300031545	Soil	MMLNRADECRRRANECRRNAAQLADAVLRGTYLDLARRWSMMTHQAETPEKEGETKRTRAFQMRLL
Ga0318572_107071561	3300031681	Soil	MVLNRADECRQRADECRRSATQVADDVLRVTYLDLARRWRMMAHEAELLERKAVGPPKS
Ga0310686_1010458917	3300031708	Soil	MILNTADECRQKADECRRNAAQVADDVLRGTYLDLACRWRMMAHQAESLEQRGETKKQAGWLKIATAR
Ga0310686_1029940422	3300031708	Soil	MTLNRADECRKRADECRLNAGQVADDMLRGRYLDLARRWRMLAYQAESLEQKEETKKQGGWLEIAKTNLFAIVR
Ga0310686_1111627972	3300031708	Soil	MRVNRADEYRQRADECRRNAAQAADDVLRGTYLDLARRWRMMAHQAESLEQKEETKKQAGWLEIAKTNLLAIVR
Ga0306917_112364391	3300031719	Soil	MVRNRADECRQRADECRRSAAQVADDVLRVTYLDLARRWRTMAHEAESLERKAMGPTKPIPRT
Ga0318500_104297441	3300031724	Soil	MVLNRADECRQRADECRRSATQVADDVLRVTYLDLARRWRMMAHEAELLERKAVGPPKSPKKVAAAVALRIDH
Ga0318501_104284681	3300031736	Soil	MVLNRADECRQRADECRRSAAQAADDVLRVTYLDLARRWRMMAHE
Ga0306918_106814421	3300031744	Soil	MVLNRADECRQRADECRRGAAQAADEVLRVTYLDLARRWRKMAHEAELLERKAT
Ga0318492_105270022	3300031748	Soil	MVLNRADECRQRADECRRSAVQAADEVLRVTYLDLARRWRMMAHEAESM
Ga0318523_103629212	3300031798	Soil	MVPNRASECRQRADECRRGAAQAADDVLRVTYLDLARRWRKMAHEAESLERK
Ga0306919_108950221	3300031879	Soil	MVRNRADECRQRADECRRSAAQVADDVLRVTYLDLARRWRTMAHEAE
Ga0306925_111179133	3300031890	Soil	MVLNRAAECRQRADECRRGAAQAADDVLRVTYLDLARRWRKMAHEAELLERKAASPTKAIPR
Ga0306925_119198232	3300031890	Soil	MVLNRADECRQRADECRRSAAQATDDVLRATYLDLARRWRMMAHEAESMERKAMGLTKPIPRT
Ga0306925_122763451	3300031890	Soil	MPVCTFTEVAWGTTMVLNRADECRQRADECRRSAVQAADEVLRVTYLDLARRWRMMAHEAESMERKAMGPTK
Ga0306923_110656243	3300031910	Soil	MALNRPDECRQRADECRRSAAQVADDVLRETYLDLARRWRMMAHEAELLERKAVGP
Ga0306921_109391401	3300031912	Soil	MVPNRASECRQRADECRRGAAQAADDVLRVTYLDLARRWRKMAHEAESLERKAMA
Ga0310912_111169292	3300031941	Soil	MALNRPDECRQRADECRRSAAQVADDVLRETYLDLARRWRMMAHEAELLERKAVGPPKPTPRT
Ga0310916_107161932	3300031942	Soil	MLNRADECRQRADECRRNAAQVADDVLRVTYLDLARRWRVMGYQAESLERKEETKKQAGWLQIARTNLLAIVR
Ga0306926_123935331	3300031954	Soil	MALNRPDECRQRADECRRSAAQVADDVLRETYLDLARRWRMMAHEAELLERKAVGPPK
Ga0306926_124659731	3300031954	Soil	MPVCTFTEVAWGTTMVLNRADVCRQRADECRRSAVQAADEVLRVTYLDLARRWRMMAHEAESMERKAMGPTKPIP
Ga0318531_101787902	3300031981	Soil	MVLNRADECRRRADECRRGAAQAADDVLRVTYLDLARRWRKMAHEAES
Ga0318531_102599792	3300031981	Soil	MVLNRADECRRRADECRRGAAQAADDMLRATYLDLARRWRKMAHEAESLERKAAGPT
Ga0306924_124524631	3300032076	Soil	MVLNRADECRQRADECRRSAAQVADDVLRVTYLDLARRWRMMAHEAELLERKAVGPPKSTSRTAE
Ga0318518_103025702	3300032090	Soil	MVPNRASECRQRADECRRGAAQAADDVLRVTYLDLARRWRKMAHEAESLERKA
Ga0307472_1010576112	3300032205	Hardwood Forest Soil	MTPNDYRQRADECRRNAAQVTDDVLRGTYLDLARRWRMMAHQVEPLEQKEETKKQSG
Ga0306920_1031997882	3300032261	Soil	MVLNRADECRQRADECRRSAAQATDDVLRATYLDLARRWRMMAHEAESMERKAMGLTKPIPR
Ga0318519_101294514	3300033290	Soil	MVLNRADECRRRADECRRGAAQAADDMLRATYLDLARRWRKMAHEAESLER

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F075190

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences