Metagenome Family F075154

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F075154
Family Type	Metagenome
Number of Sequences	119
Average Sequence Length	45 residues
Representative Sequence	PLGIVIGLAGFVLAWSLGALLNLVAQVSDHTHARHLMMESPANAEK
Number of Associated Samples	101
Number of Associated Scaffolds	119

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	0.00 %
% of genes near scaffold ends (potentially truncated)	99.16 %
% of genes from short scaffolds (< 2000 bps)	89.92 %
Associated GOLD sequencing projects	95
AlphaFold2 3D model prediction	No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (100.000 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil (17.647 % of family members)
Environment Ontology (ENVO)	Unclassified (25.210 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (54.622 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	Yes	Secondary Structure distribution:	α-helix: 73.91% β-sheet: 0.00% Coil/Unstructured: 26.09%
Feature Viewer

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Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 119 Family Scaffolds
PF16258	DUF4912	27.73
PF00551	Formyl_trans_N	5.88
PF01467	CTP_transf_like	5.88
PF02660	G3P_acyltransf	0.84
PF00346	Complex1_49kDa	0.84
PF09335	SNARE_assoc	0.84
PF09543	DUF2379	0.84
PF07479	NAD_Gly3P_dh_C	0.84

COG ID	Name	Functional Category	% Frequency in 119 Family Scaffolds
COG0240	Glycerol-3-phosphate dehydrogenase	Energy production and conversion [C]	0.84
COG0344	Phospholipid biosynthesis protein PlsY, probable glycerol-3-phosphate acyltransferase	Lipid transport and metabolism [I]	0.84
COG0398	Uncharacterized membrane protein YdjX, related to fungal oxalate transporter, TVP38/TMEM64 family	Function unknown [S]	0.84
COG0586	Membrane integrity protein DedA, putative transporter, DedA/Tvp38 family	Cell wall/membrane/envelope biogenesis [M]	0.84
COG0649	NADH:ubiquinone oxidoreductase 49 kD subunit (chain D)	Energy production and conversion [C]	0.84
COG1238	Uncharacterized membrane protein YqaA, VTT domain	Function unknown [S]	0.84
COG3261	Ni,Fe-hydrogenase III large subunit	Energy production and conversion [C]	0.84

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	100.00 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	100.00 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	100.00 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	83.19 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	83.19 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
unclassified Verrucomicrobia	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia	68.07 %
Spartobacteria	class	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria	10.08 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	68.07 %
Chthoniobacterales	order	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales	8.40 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	68.07 %
Chthoniobacteraceae	family	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae	8.40 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	68.07 %
Candidatus Udaeobacter	genus	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter	8.40 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	68.07 %
Candidatus Udaeobacter copiosus	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter → Candidatus Udaeobacter copiosus	7.56 %
Unclassified	root	N/A	0.00 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2124908045\|KansclcFeb2_ConsensusfromContig1190698	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	824	Open in IMG/M
2199352025\|deepsgr__Contig_42194	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	557	Open in IMG/M
3300000580\|AF_2010_repII_A01DRAFT_1014823	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1250	Open in IMG/M
3300000651\|AP72_2010_repI_A10DRAFT_1036514	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	636	Open in IMG/M
3300000956\|JGI10216J12902_117413662	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	516	Open in IMG/M
3300002128\|JGI24036J26619_10008961	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1794	Open in IMG/M
3300004114\|Ga0062593_100485712	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1139	Open in IMG/M
3300004157\|Ga0062590_101418540	All Organisms → cellular organisms → Bacteria	692	Open in IMG/M
3300005181\|Ga0066678_10503741	All Organisms → cellular organisms → Bacteria	805	Open in IMG/M
3300005276\|Ga0065717_1017173	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	502	Open in IMG/M
3300005288\|Ga0065714_10093990	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1830	Open in IMG/M
3300005290\|Ga0065712_10526795	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	632	Open in IMG/M
3300005332\|Ga0066388_100613120	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1709	Open in IMG/M
3300005332\|Ga0066388_104356362	All Organisms → cellular organisms → Bacteria	721	Open in IMG/M
3300005343\|Ga0070687_100412863	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	888	Open in IMG/M
3300005364\|Ga0070673_102238443	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	519	Open in IMG/M
3300005440\|Ga0070705_101647822	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	541	Open in IMG/M
3300005451\|Ga0066681_10044553	All Organisms → cellular organisms → Bacteria	2399	Open in IMG/M
3300005540\|Ga0066697_10661762	All Organisms → cellular organisms → Bacteria	574	Open in IMG/M
3300005555\|Ga0066692_10580718	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	706	Open in IMG/M
3300005559\|Ga0066700_10449560	All Organisms → cellular organisms → Bacteria	904	Open in IMG/M
3300005560\|Ga0066670_10347062	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	905	Open in IMG/M
3300005561\|Ga0066699_10580330	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	805	Open in IMG/M
3300005574\|Ga0066694_10528835	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	549	Open in IMG/M
3300005764\|Ga0066903_104292423	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	762	Open in IMG/M
3300005841\|Ga0068863_100098774	All Organisms → cellular organisms → Bacteria	2773	Open in IMG/M
3300006046\|Ga0066652_100047228	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	3218	Open in IMG/M
3300006046\|Ga0066652_101618205	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	594	Open in IMG/M
3300006175\|Ga0070712_101669932	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	557	Open in IMG/M
3300006800\|Ga0066660_10306284	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1271	Open in IMG/M
3300006852\|Ga0075433_11228787	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	650	Open in IMG/M
3300007255\|Ga0099791_10579205	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	548	Open in IMG/M
3300009092\|Ga0105250_10193311	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	857	Open in IMG/M
3300010038\|Ga0126315_10961002	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	571	Open in IMG/M
3300010046\|Ga0126384_10857055	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	817	Open in IMG/M
3300010329\|Ga0134111_10239879	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	742	Open in IMG/M
3300010359\|Ga0126376_10246681	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1516	Open in IMG/M
3300010359\|Ga0126376_10550445	All Organisms → cellular organisms → Bacteria	1080	Open in IMG/M
3300010360\|Ga0126372_10762671	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	953	Open in IMG/M
3300010360\|Ga0126372_12320930	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	586	Open in IMG/M
3300010362\|Ga0126377_12151150	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	634	Open in IMG/M
3300010366\|Ga0126379_10976340	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	951	Open in IMG/M
3300010366\|Ga0126379_11105298	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	899	Open in IMG/M
3300010366\|Ga0126379_12335217	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	635	Open in IMG/M
3300010376\|Ga0126381_100503205	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1709	Open in IMG/M
3300010397\|Ga0134124_11572426	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	687	Open in IMG/M
3300010398\|Ga0126383_10167953	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	2069	Open in IMG/M
3300010398\|Ga0126383_11850682	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	692	Open in IMG/M
3300010398\|Ga0126383_13137894	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	540	Open in IMG/M
3300010398\|Ga0126383_13264537	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	530	Open in IMG/M
3300010403\|Ga0134123_13339798	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	518	Open in IMG/M
3300012096\|Ga0137389_10426337	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1134	Open in IMG/M
3300012199\|Ga0137383_10542469	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	851	Open in IMG/M
3300012202\|Ga0137363_10351359	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter	1220	Open in IMG/M
3300012202\|Ga0137363_11437753	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	580	Open in IMG/M
3300012205\|Ga0137362_11018253	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	705	Open in IMG/M
3300012208\|Ga0137376_10683791	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	886	Open in IMG/M
3300012285\|Ga0137370_10109229	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1565	Open in IMG/M
3300012354\|Ga0137366_11023101	All Organisms → cellular organisms → Bacteria	573	Open in IMG/M
3300012361\|Ga0137360_10531794	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1003	Open in IMG/M
3300012915\|Ga0157302_10500767	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	525	Open in IMG/M
3300012917\|Ga0137395_10673018	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	749	Open in IMG/M
3300012922\|Ga0137394_10770602	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	807	Open in IMG/M
3300012925\|Ga0137419_10746879	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	797	Open in IMG/M
3300012929\|Ga0137404_11521388	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	619	Open in IMG/M
3300012930\|Ga0137407_10120339	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter → Candidatus Udaeobacter copiosus	2280	Open in IMG/M
3300012930\|Ga0137407_11416326	All Organisms → cellular organisms → Bacteria	661	Open in IMG/M
3300012948\|Ga0126375_10104296	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter → Candidatus Udaeobacter copiosus	1688	Open in IMG/M
3300012948\|Ga0126375_11906045	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	522	Open in IMG/M
3300012958\|Ga0164299_10848594	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	657	Open in IMG/M
3300012961\|Ga0164302_10441639	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	901	Open in IMG/M
3300012971\|Ga0126369_12477797	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	604	Open in IMG/M
3300013296\|Ga0157374_11292547	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	751	Open in IMG/M
3300014150\|Ga0134081_10367795	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	532	Open in IMG/M
3300014157\|Ga0134078_10508203	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	561	Open in IMG/M
3300015372\|Ga0132256_100250497	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1840	Open in IMG/M
3300015374\|Ga0132255_100715584	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter → Candidatus Udaeobacter copiosus	1488	Open in IMG/M
3300015374\|Ga0132255_100924347	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter → Candidatus Udaeobacter copiosus	1305	Open in IMG/M
3300016294\|Ga0182041_10284776	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter → Candidatus Udaeobacter copiosus	1362	Open in IMG/M
3300016294\|Ga0182041_10916584	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	789	Open in IMG/M
3300018028\|Ga0184608_10177652	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	927	Open in IMG/M
3300018051\|Ga0184620_10293449	All Organisms → cellular organisms → Bacteria	548	Open in IMG/M
3300018054\|Ga0184621_10312141	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	554	Open in IMG/M
3300018071\|Ga0184618_10203350	All Organisms → cellular organisms → Bacteria	828	Open in IMG/M
3300018072\|Ga0184635_10108659	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1099	Open in IMG/M
3300018431\|Ga0066655_10065864	All Organisms → cellular organisms → Bacteria	1924	Open in IMG/M
3300019356\|Ga0173481_10024091	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter → Candidatus Udaeobacter copiosus	1885	Open in IMG/M
3300019880\|Ga0193712_1001551	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter → Candidatus Udaeobacter copiosus	4767	Open in IMG/M
3300019882\|Ga0193713_1204050	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	503	Open in IMG/M
3300019888\|Ga0193751_1024945	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter → Candidatus Udaeobacter copiosus	2887	Open in IMG/M
3300020001\|Ga0193731_1073694	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	892	Open in IMG/M
3300020062\|Ga0193724_1000296	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter → Candidatus Udaeobacter copiosus	12001	Open in IMG/M
3300021168\|Ga0210406_11087684	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	589	Open in IMG/M
3300021363\|Ga0193699_10321724	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	645	Open in IMG/M
3300024279\|Ga0247692_1036041	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	761	Open in IMG/M
3300024288\|Ga0179589_10025832	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	2004	Open in IMG/M
3300025918\|Ga0207662_10018451	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria	3959	Open in IMG/M
3300025960\|Ga0207651_12011494	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	519	Open in IMG/M
3300026088\|Ga0207641_11196835	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	759	Open in IMG/M
3300026322\|Ga0209687_1072088	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1124	Open in IMG/M
3300026323\|Ga0209472_1047431	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1866	Open in IMG/M
3300026331\|Ga0209267_1025293	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria	2911	Open in IMG/M
3300026331\|Ga0209267_1234405	All Organisms → cellular organisms → Bacteria	662	Open in IMG/M
3300026335\|Ga0209804_1107310	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1278	Open in IMG/M
3300026498\|Ga0257156_1073461	All Organisms → cellular organisms → Bacteria	708	Open in IMG/M
3300026538\|Ga0209056_10011911	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	8770	Open in IMG/M
3300026547\|Ga0209156_10115057	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1324	Open in IMG/M
3300026547\|Ga0209156_10184516	All Organisms → cellular organisms → Bacteria	1000	Open in IMG/M
3300026693\|Ga0208709_101204	All Organisms → cellular organisms → Bacteria	994	Open in IMG/M
3300027655\|Ga0209388_1223233	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	517	Open in IMG/M
3300031446\|Ga0170820_10231256	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	916	Open in IMG/M
3300031446\|Ga0170820_14739290	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	589	Open in IMG/M
3300031720\|Ga0307469_10135058	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1815	Open in IMG/M
3300031880\|Ga0318544_10287335	All Organisms → cellular organisms → Bacteria	638	Open in IMG/M
3300031890\|Ga0306925_11783269	All Organisms → cellular organisms → Bacteria	590	Open in IMG/M
3300031897\|Ga0318520_11063423	All Organisms → cellular organisms → Bacteria	512	Open in IMG/M
3300031941\|Ga0310912_10615394	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	845	Open in IMG/M
3300031941\|Ga0310912_10671707	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	804	Open in IMG/M
3300031954\|Ga0306926_11784148	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	699	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	89.08%
Host-Associated	Host-Associated	10.92%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	84.87%
Plants	Host-Associated → Plants	10.92%
Aquatic	Environmental → Aquatic	4.20%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	84.87%
Rhizoplane	Host-Associated → Plants → Rhizoplane	5.88%
Rhizosphere	Host-Associated → Plants → Rhizosphere	5.04%
Sediment	Environmental → Aquatic → Sediment	4.20%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	78.15%
Loam	Environmental → Terrestrial → Soil → Loam	6.72%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	4.20%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	4.20%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	2.52%
Soil	Host-Associated → Plants → Rhizosphere → Soil	2.52%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	1.68%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	43.70%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	19.33%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	13.45%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	4.20%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	4.20%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	3.36%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	2.52%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	2.52%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	2.52%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	1.68%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	1.68%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.84%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	17.65%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	15.13%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	14.29%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	8.40%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	5.88%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	4.20%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	3.36%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	3.36%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	2.52%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	2.52%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	2.52%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	1.68%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	1.68%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	1.68%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	1.68%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Miscanthus Rhizosphere	1.68%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	1.68%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	1.68%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.84%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	0.84%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.84%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Corn, Switchgrass And Miscanthus Rhizosphere	0.84%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.84%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.84%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	0.84%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.84%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.84%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.84%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2124908045	Soil microbial communities from Great Prairies - Kansas assembly 1 01_01_2011	Environmental	Open in IMG/M
2199352025	Soil microbial communities from Rothamsted, UK, for project Deep Soil - DEEP SOIL	Environmental	Open in IMG/M
3300000580	Forest soil microbial communities from Amazon forest - 2010 replicate II A01	Environmental	Open in IMG/M
3300000651	Forest soil microbial communities from Amazon forest - Pasture72 2010 replicate I A10	Environmental	Open in IMG/M
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300002128	Switchgrass rhizosphere bulk soil microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5	Environmental	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300004157	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - - Combined assembly of AARS Block 2	Environmental	Open in IMG/M
3300005181	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_127	Environmental	Open in IMG/M
3300005276	Arabidopsis rhizosphere microbial communities from the University of North Carolina - sample Mutant cpr5	Host-Associated	Open in IMG/M
3300005288	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 2: eDNA_1	Host-Associated	Open in IMG/M
3300005290	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 1: eDNA_1	Host-Associated	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005343	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG	Environmental	Open in IMG/M
3300005364	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG	Host-Associated	Open in IMG/M
3300005440	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG	Environmental	Open in IMG/M
3300005451	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_130	Environmental	Open in IMG/M
3300005540	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_146	Environmental	Open in IMG/M
3300005555	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_141	Environmental	Open in IMG/M
3300005559	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_149	Environmental	Open in IMG/M
3300005560	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_119	Environmental	Open in IMG/M
3300005561	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_148	Environmental	Open in IMG/M
3300005574	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_143	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005841	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2	Host-Associated	Open in IMG/M
3300006046	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_101	Environmental	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300006800	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109	Environmental	Open in IMG/M
3300006852	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2	Host-Associated	Open in IMG/M
3300007255	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_1	Environmental	Open in IMG/M
3300009092	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-4 metaG	Host-Associated	Open in IMG/M
3300010038	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot106	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010329	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_2_11112015	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010397	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-4	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300010403	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-3	Environmental	Open in IMG/M
3300012096	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4B metaG	Environmental	Open in IMG/M
3300012199	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_40_16 metaG	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012205	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG	Environmental	Open in IMG/M
3300012208	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_20_16 metaG	Environmental	Open in IMG/M
3300012285	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_20_16 metaG	Environmental	Open in IMG/M
3300012354	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_60_16 metaG	Environmental	Open in IMG/M
3300012361	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaG	Environmental	Open in IMG/M
3300012915	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S103-311B-2	Environmental	Open in IMG/M
3300012917	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk2.16 metaG	Environmental	Open in IMG/M
3300012922	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk1.16 metaG	Environmental	Open in IMG/M
3300012925	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012929	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012930	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012948	Tropical forest soil microbial communities from Panama - MetaG Plot_14	Environmental	Open in IMG/M
3300012958	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_221_MG	Environmental	Open in IMG/M
3300012961	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_202_MG	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300013296	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG	Host-Associated	Open in IMG/M
3300014150	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_20cm_5_24_1 metaG	Environmental	Open in IMG/M
3300014157	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_20cm_2_24_1 metaG	Environmental	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300018028	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_30_coex	Environmental	Open in IMG/M
3300018051	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_5_b1	Environmental	Open in IMG/M
3300018054	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_30_b1	Environmental	Open in IMG/M
3300018071	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_30_b1	Environmental	Open in IMG/M
3300018072	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_30_b2	Environmental	Open in IMG/M
3300018431	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_104	Environmental	Open in IMG/M
3300019356	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S073-202C-2 (version 2)	Environmental	Open in IMG/M
3300019880	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H3a1	Environmental	Open in IMG/M
3300019882	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H3a2	Environmental	Open in IMG/M
3300019888	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L1c2	Environmental	Open in IMG/M
3300020001	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1a2	Environmental	Open in IMG/M
3300020062	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2a1	Environmental	Open in IMG/M
3300021168	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-M	Environmental	Open in IMG/M
3300021363	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L3c2	Environmental	Open in IMG/M
3300024279	Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK33	Environmental	Open in IMG/M
3300024288	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_08_16fungal	Environmental	Open in IMG/M
3300025918	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG (SPAdes)	Environmental	Open in IMG/M
3300025960	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026088	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026322	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_136 (SPAdes)	Environmental	Open in IMG/M
3300026323	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_130 (SPAdes)	Environmental	Open in IMG/M
3300026331	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_137 (SPAdes)	Environmental	Open in IMG/M
3300026335	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_139 (SPAdes)	Environmental	Open in IMG/M
3300026498	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NI-49-A	Environmental	Open in IMG/M
3300026538	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114 (SPAdes)	Environmental	Open in IMG/M
3300026547	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_124 (SPAdes)	Environmental	Open in IMG/M
3300026693	Grasslands soil microbial communities from Kansas, USA, that are Nitrogen fertilized - NN595 (SPAdes)	Environmental	Open in IMG/M
3300027655	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_1 (SPAdes)	Environmental	Open in IMG/M
3300031446	Fir Summer Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300031880	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f25	Environmental	Open in IMG/M
3300031890	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)	Environmental	Open in IMG/M
3300031897	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f16	Environmental	Open in IMG/M
3300031941	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX080	Environmental	Open in IMG/M
3300031954	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
KansclcFeb2_10896720	2124908045	Soil	PGPLGIVIGLAGFVLAWSLGALLNLVAQVSDHTHARHLMMESPASVEK
deepsgr_00375590	2199352025	Soil	MEYIPGPLGIVIGAAGFVLAWSLGALLNLVAQVSDHTHARHLMMETPGES
AF_2010_repII_A01DRAFT_10148233	3300000580	Forest Soil	IGLAGFVLAWSLGALLNLVAQVSDHTHARHLMMESPSGTDK*
AP72_2010_repI_A10DRAFT_10365141	3300000651	Forest Soil	YRTEYIPGPLGIVIGLAGFVLAWSLGALLNLVAQVSDHTHARHLMMESPATAEK*
JGI10216J12902_1174136621	3300000956	Soil	EYIPGPLGIVIGAAGFVLAWSLGALLNLVAQVSDHTHARHLMMETPANHEK*
JGI24036J26619_100089611	3300002128	Corn, Switchgrass And Miscanthus Rhizosphere	AGFVLAWSLGVLLKLVAQVSNHTRARHLMMESPSAAEK*
Ga0062593_1004857123	3300004114	Soil	IVIGLAGFVLAWSLGALLNLVAQVSDHTHARHLMMESPADAEK*
Ga0062590_1014185402	3300004157	Soil	YRMDYIPGPLGIVIGAAGFVLAWSLGALLNLVAQVSDHTHARHLMMETPGESEK*
Ga0066678_105037412	3300005181	Soil	DYIPGPLGIVIGGGGFVLAWSLGALLNLVAQVSDHTHARHLMMETPGEK*
Ga0065717_10171732	3300005276	Arabidopsis Rhizosphere	IGLAGFVLAWSLGALLNLVAQVSDHTHARHLMMESPSGAEK*
Ga0065714_100939901	3300005288	Miscanthus Rhizosphere	IGLAGFVLALSLGALLNLVAQVSDHTHARHLMMESPSGADK*
Ga0065712_105267952	3300005290	Miscanthus Rhizosphere	LGIVIGAAGFVLAWSLGALLNLVAQVSDHTHARHLMMETPGESGK*
Ga0066388_1006131204	3300005332	Tropical Forest Soil	LGIVIGLAGFVLAWSLGALLNLVAQVSDHTHASHLMMESPANPEK*
Ga0066388_1043563622	3300005332	Tropical Forest Soil	VEYIPGPMGIVLGLAGFVLAWSLGALLNLVAQVSDHTHARHLMMETPGEK*
Ga0070687_1004128632	3300005343	Switchgrass Rhizosphere	ALGIVIGLAGFVLAWSLGVLLKLVAQVSNHTRARHLMMESPSAAEK*
Ga0070673_1022384432	3300005364	Switchgrass Rhizosphere	IVIGLAGFVLAWSLGVLLKLVAQVSNHTRARYLMMESPSAAEK*
Ga0070705_1016478221	3300005440	Corn, Switchgrass And Miscanthus Rhizosphere	GLAGFVLAWSLGVLLKLVAQVSNHTRARHLMMESPSAAEK*
Ga0066681_100445535	3300005451	Soil	PGALGIVIGAAGFVLAWSLGALLNLVAQVSDHTHARHLMMETPGESAK*
Ga0066697_106617622	3300005540	Soil	DYIPGALGIVIGAAGFVLAWSLGALLNLVAQVSDHTHARHLMMETPGESAK*
Ga0066692_105807182	3300005555	Soil	GVVIGAAGFVLAWSLGALLNLVAQVSDHTHARHLMMEAPSNPEK*
Ga0066700_104495602	3300005559	Soil	GFVLAWSLGALLNLVAQVSDHTHAQHLMMETSATPQK*
Ga0066670_103470621	3300005560	Soil	IGLAGFVLAWSLGALLNLVAQVSDHTHARHLMMESPTNVEK*
Ga0066699_105803302	3300005561	Soil	GFVLAWSLGALLNLVAQVSDHTHARHLMMESPTNVEK*
Ga0066694_105288351	3300005574	Soil	FVLAWSLGALLNLVAQVSDHTHARHLMMETPGESAK*
Ga0066903_1042924232	3300005764	Tropical Forest Soil	IGLAGFVLAWSLGALLNLVAQVSDHTHARHLMMESPASAEK*
Ga0068863_1000987745	3300005841	Switchgrass Rhizosphere	PLGIVIGLAGFVLALSLGALLNLVAQVSDHTHARHLMMESPSGADK*
Ga0066652_1000472285	3300006046	Soil	RMDYIPGALGIVIGAAGFVLAWSLGALLNLVAQVSDHTHARHLMMETPGESAK*
Ga0066652_1016182051	3300006046	Soil	GPLGIVIGVAGFVLAWSLGALLNLVAQVSDHTHARHLMMETPGESAK*
Ga0070712_1016699322	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	RTEYIPGPLGIVIGLAGFVLALSLGALLNLVAQVSDHTHARHLMMESPSGADK*
Ga0066660_103062843	3300006800	Soil	YRMEYIPGPLGIVIGLGGFVLAWSLGALLNLVAQVSDHTHARHLMMETLAKP*
Ga0075433_112287872	3300006852	Populus Rhizosphere	GPLGIVIGLAGFVLAWSLGALLNLVAQVSDHTHARHLMMESPADAEK*
Ga0099791_105792052	3300007255	Vadose Zone Soil	VIGAAGFVFAWSLGALLNLVAQVSDHTHARHLMMETPGESAK*
Ga0105250_101933112	3300009092	Switchgrass Rhizosphere	GALGIVIGLAGFVLAWSLGVLLKLVAQVSNHTRARHLMMESPSAAEK*
Ga0126315_109610021	3300010038	Serpentine Soil	LGIVIGLAGFVLSWSLGALLNLVAQVSDHTHARHLMMESPGSAEK*
Ga0126384_108570551	3300010046	Tropical Forest Soil	LGIVIGLAGFVLAWSLGALLNLVAQVSDHTHARHLMMESPTSAAK*
Ga0134111_102398792	3300010329	Grasslands Soil	EYIPGPLGIVIGAAGFVLAWSLGALLNLVAQVSDHTHARHLMMEAPSKPEK*
Ga0126376_102466811	3300010359	Tropical Forest Soil	FVLGWSLGALLNLVAQVSDHTHARHLMMETPTNPEK*
Ga0126376_105504452	3300010359	Tropical Forest Soil	IVIGLAGFVLAWSLGALLNLVAQVSDHTHARHLMMETPGESGN*
Ga0126372_107626712	3300010360	Tropical Forest Soil	EYIPGPLGIVIGLAGFVLAWSLGTLLNLVAQVSDHTHARHLMMESPSAVDK*
Ga0126372_123209302	3300010360	Tropical Forest Soil	GLAGFVLAWSLGALLNLVAQVSDHTHARHLMMESPANSEK*
Ga0126377_121511502	3300010362	Tropical Forest Soil	GLAGFVFAWSLGALLNLVAQVSDHTHARHLMMETPANSEK*
Ga0126379_109763402	3300010366	Tropical Forest Soil	GIVIGLAGFVLSWSLGALLNLVAQVSDHTHARHLMMESPTSAAK*
Ga0126379_111052981	3300010366	Tropical Forest Soil	VDYIPGPLGIVIGLAGFVLAWSLGALLNLVAQVSDHTHARHLMMESPANTEKS*
Ga0126379_123352171	3300010366	Tropical Forest Soil	VLAWSLGALLNLVAQVSDHTHARHLMMESPSGADK*
Ga0126381_1005032054	3300010376	Tropical Forest Soil	PGPVGIVIGLAGFLLAWSLGALLNLVAQVSDHIHAKHLMIEAPANPEK*
Ga0134124_115724262	3300010397	Terrestrial Soil	GFVLSLSLGALLNLVAQVSDHTHARHLGMESPASTD*
Ga0126383_101679531	3300010398	Tropical Forest Soil	EYIPGALGIVIGLAGFVLAWSLGALLNLVAQVSDHTHARHLMMESPTSAAK*
Ga0126383_118506821	3300010398	Tropical Forest Soil	VVIGLAGFVLAWSLGALLNLVAQVSDHTHARHLMMESPAKAEK*
Ga0126383_131378941	3300010398	Tropical Forest Soil	YRVEHIPGPLGIVIGLAGFLLAWSLGALLNLVAQVSDHTHARHLMMETRGEK*
Ga0126383_132645372	3300010398	Tropical Forest Soil	PLGIVIGLAGFVLAWSLGALLNLVAQVSDHTHARHLMMESPANAEK*
Ga0134123_133397982	3300010403	Terrestrial Soil	YIPGALGIVIGLAGFVLAWSLGVLLKLVAQVSNHTRARHLMMESPSAAEK*
Ga0137389_104263371	3300012096	Vadose Zone Soil	IPGPLGIVVGLAGFVLAWSLGALLNLVAQVSDHTHARHLMMESPASVEK*
Ga0137383_105424691	3300012199	Vadose Zone Soil	GFVLSWSLGTLLNLVAQVSDHTHARHLMMESPATAEK*
Ga0137363_103513591	3300012202	Vadose Zone Soil	IGVAGFVLAWSLGALLNLVAQVSDHTHARHLMMETPTKATSDL*
Ga0137363_114377532	3300012202	Vadose Zone Soil	LGIVVGLAGFVLAWSLGALLNLVAQVSDHTHARHLMMESPTNAEK*
Ga0137362_110182531	3300012205	Vadose Zone Soil	VGLAGFVLAWSLGALLNLVAQVSDHTHARHLMMESPTNAEK*
Ga0137376_106837912	3300012208	Vadose Zone Soil	YIPGALGIVIGLAGFVLAWSLGALLNLVAQVSDHTHARHLMMESPGNLEK*
Ga0137370_101092294	3300012285	Vadose Zone Soil	LAWSLGALLNLVAQVSDHTHARHLMLESPTNVEK*
Ga0137366_110231012	3300012354	Vadose Zone Soil	MEYIPGPLGIVIGAAGFVLAWSLGALLNLVAQVSDHTHARHLMMETPGESGK*
Ga0137360_105317942	3300012361	Vadose Zone Soil	FVLAWSLGALLNLVAQVSDHTHARHLMMESPTNAEK*
Ga0157302_105007671	3300012915	Soil	YIPGPLGIVIGAAGFVLAWSLGALLNLVAQVSDHTHARHLMMETPNDN*
Ga0137395_106730181	3300012917	Vadose Zone Soil	LGIVIGAAGFVFAWSLGALLNLVAQVSDHTHARHLMMETPGESAK*
Ga0137394_107706021	3300012922	Vadose Zone Soil	IPGPLGIVVGLAGFVLAWSLGALLNLVAQVSDHTHARHLMMESPTNAEK*
Ga0137419_107468792	3300012925	Vadose Zone Soil	TEYIPGPLGIVIGAAGFVLAWSLGALLNLVAQVSDHTHARHLMMETPGQSEK*
Ga0137404_115213881	3300012929	Vadose Zone Soil	YRMDYIPGPLGIVIGAAGFVLAWSLGALLNLVAQVSDHTHARHLMMETPGESAK*
Ga0137407_101203391	3300012930	Vadose Zone Soil	EYIPGALGIVIGAGGFVLAWSLGALLNLVAQVSDHTHARHLMMETPSEN*
Ga0137407_114163262	3300012930	Vadose Zone Soil	PLGIVIGAAGFVFAWSLGALLNLVAQVSDHTHARHLMMETPGESAK*
Ga0126375_101042961	3300012948	Tropical Forest Soil	LAWSLGALLNLVAQVSDHTHARHLMMKSPANTENS*
Ga0126375_119060451	3300012948	Tropical Forest Soil	PLGIVIGLAGFVLAWSLGALLNLVAQVSDHTHARHLMMESPSGPDK*
Ga0164299_108485942	3300012958	Soil	LAWSLGALLNLVAQVSDHTHAHHLMMESPSGAEK*
Ga0164302_104416392	3300012961	Soil	GIVIVLAGFVLAWPVGALLNLVAQVSDHTHANHLMMESPSGAEK*
Ga0126369_124777972	3300012971	Tropical Forest Soil	PGPLGIVIGLAGFVFAWSLGVLLNLVAQVSDHTHASHLMMESPGKAEK*
Ga0157374_112925472	3300013296	Miscanthus Rhizosphere	IVIGLAGFVLSLSLGALLNLVAQVSDHTHARHLGMESPASTD*
Ga0134081_103677952	3300014150	Grasslands Soil	LGIVIGLAGFVLAWSLGALLNLVAQVSDHTHARHLMMESPGNLEK*
Ga0134078_105082031	3300014157	Grasslands Soil	LAGFVLAWSLGALLNLVAQVSDHTHASHLMMESPGNLEK*
Ga0132256_1002504974	3300015372	Arabidopsis Rhizosphere	ALGIVIGLAGFVLSLSLGALLNLVAQVSDHTHARHLGMESPASTD*
Ga0132255_1007155841	3300015374	Arabidopsis Rhizosphere	IPGPLGIVIGLAGFVLAWSLGALLNLVAQVSDHTHARHLMMESPSGAEK*
Ga0132255_1009243473	3300015374	Arabidopsis Rhizosphere	RYHTEYIPGPLGIVIGLAGFVFSWSLGALLNLVAQVSDHTHARHLMMESPADAGK*
Ga0182041_102847761	3300016294	Soil	IPGPLGIVIGLAGLVLAWSLGALLNLVAQVSDHTHARHLMMEAPVDPEK
Ga0182041_109165841	3300016294	Soil	YIPGPLGIVIGLAGFVLAWSLGALLNLVAQVSDHTHARHLTMETPATPEK
Ga0184608_101776522	3300018028	Groundwater Sediment	LGIVIGLAGFVLAWSLGALLNLVAQVSDHTHARHLMMESPASVEK
Ga0184620_102934491	3300018051	Groundwater Sediment	TEYIPGALGIVIGAGGFVLAWSLGALLNLVAQVSDHTHARHLMMETPGEN
Ga0184621_103121411	3300018054	Groundwater Sediment	IPGPLGIVIGLAGFVLAWSLGALLILVAQVSDHTHARHLMMESPADAEK
Ga0184618_102033501	3300018071	Groundwater Sediment	GPLGIVIGAAGFVLAWSLGALLNLVAQVSDHTHARHLMMETPGES
Ga0184635_101086592	3300018072	Groundwater Sediment	GFVLAWSLGALLNLVAQVSDHTHARHLMMESPADAEK
Ga0066655_100658643	3300018431	Grasslands Soil	EYIPGPLGIVIGAAGFVLAWSLGALLNLVAQVSDHTHAQHLMMEAPSKPEK
Ga0173481_100240911	3300019356	Soil	GPLGIVIGTAGFVLAWSLGALLNLVAQVSDHTHARHLMMETPGESEK
Ga0193712_10015517	3300019880	Soil	WLASYRTDYIPGPLGIVIGAAGFVLAWSLGALLNLVAQVSDHTHARHLMMETPGEN
Ga0193713_12040502	3300019882	Soil	YRTDYIPGPLGIVIGAAGFVLAWSLGALLNLVAQVSDHTHARHLMMETPGES
Ga0193751_10249451	3300019888	Soil	YIPGPLGIVIGAAGFVLAWSLGALLNLVAQVSDHTHARHLMMETPGEK
Ga0193731_10736942	3300020001	Soil	LAGFVLAWSLGALLNLVAQVSDHTHARHLMMESPADAEK
Ga0193724_100029615	3300020062	Soil	GAAGFVLAWSLGALLNLVAQVSDHTHARHLMMETPGEN
Ga0210406_110876841	3300021168	Soil	VIGAAGFVFAWSLGALLNLVAQVSDHTHARHLMMETPGES
Ga0193699_103217241	3300021363	Soil	IVIGAAGFVLAWSLGALLNLVAQVSDHTHARHLMMETPGES
Ga0247692_10360412	3300024279	Soil	GIVIGLAGFVLALSLGALLNLVAQVSDHTHARHLMMESPSGADK
Ga0179589_100258324	3300024288	Vadose Zone Soil	IPGALGIVIGAAGFVLAWSLGALLNLVAQVSDHTHARHLMMETPGES
Ga0207662_100184511	3300025918	Switchgrass Rhizosphere	AGFVLAWSLGVLLKLVAQVSNHTRARHLMMESPSAAEK
Ga0207651_120114941	3300025960	Switchgrass Rhizosphere	IVIGLAGFVLAWSLGVLLKLVAQVSNHTRARHLMMESPSAAEK
Ga0207641_111968351	3300026088	Switchgrass Rhizosphere	PLGIVIGLAGFVLALSLGALLNLVAQVSDHTHARHLMMESPSGADK
Ga0209687_10720881	3300026322	Soil	EYIPGPLGIVIGLGGFVLAWSLGALLNLVAQVSDHTHARHLMMETPAKP
Ga0209472_10474311	3300026323	Soil	PGALGIVIGAAGFVLAWSLGALLNLVAQVSDHTHARHLMMETPGESAK
Ga0209267_10252931	3300026331	Soil	YRTEYIPGPLGIVIGLAGFVLAWSLGALLNLVAQVSDHTHARHLMMESPASAEK
Ga0209267_12344052	3300026331	Soil	IVIGAAGFVLAWSLGALLNLVAQVSDHTHAQHLMMETSATPQK
Ga0209804_11073101	3300026335	Soil	FVLAWSLGALLNLVAQVSDHTHARHLMMESPASAEK
Ga0257156_10734611	3300026498	Soil	YIPGPLGIVIGLGGFVLAWSLGALLNLVAQVSDHTHARHLMMETPAKPEK
Ga0209056_1001191111	3300026538	Soil	GLAGFVLAWSLGALLNLIAQVSDHTHARHLMMESPTNVEK
Ga0209156_101150574	3300026547	Soil	RYRTEYIPGALGIVIGLAGFVLAWSLGALLNLVAQVSDHTHARHLMMESPGDLEK
Ga0209156_101845162	3300026547	Soil	IGVAGFVLAWSLGALLNLVAQVSDHTHARHLMMETPGESAK
Ga0208709_1012042	3300026693	Soil	YRMEYIPGPLGIVIGTAGFVLAWSLGALLNLVAQVSDHTHARHLMMETPTGPEK
Ga0209388_12232332	3300027655	Vadose Zone Soil	VIGAAGFVFAWSLGALLNLVAQVSDHTHARHLMMETPGESAK
Ga0170820_102312562	3300031446	Forest Soil	AGFVLAWSLGALLNLVAQVSDHTHARHLMMESPASVEK
Ga0170820_147392902	3300031446	Forest Soil	GALGIVIGLAGFVLAWSLGALLNLVAQVSDHTHARHLMMESPASVEK
Ga0307469_101350584	3300031720	Hardwood Forest Soil	IGLAGFVLAWSLGALLNLVAQVSDHTHARHLMIESPADPGK
Ga0318544_102873351	3300031880	Soil	PLGIVIGLGGFVLAWSLGALLNLVAQVSDHTHARHLMMESPASSEK
Ga0306925_117832691	3300031890	Soil	LAGFVLAWSLGALLNLVAQVSDHTHARHLTMETPATPEK
Ga0318520_110634232	3300031897	Soil	VLAWSLGALLNLVAQVSDHTHARHLMMESPASSEK
Ga0310912_106153942	3300031941	Soil	PGPLGVVIGLAGFVLAWSLGALLNLVAQVSDHTHARHLMMESPATAEK
Ga0310912_106717071	3300031941	Soil	PLGIVIGLAGFVLAWSLGALLNLVAQVSDHTHARHLTMETPATPEK
Ga0306926_117841482	3300031954	Soil	RTEYIPGPLGVVIGLAGFVLAWSLGALLNLVAQVSDHTHARHLMMESPATAEK

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F075154

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences