Metagenome / Metatranscriptome Family F074665

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F074665
Family Type	Metagenome / Metatranscriptome
Number of Sequences	119
Average Sequence Length	47 residues
Representative Sequence	PLGPIALVAHRVANGRVTSVGLRLAEDDAPATLPAKLKKAARDLWSRLG
Number of Associated Samples	97
Number of Associated Scaffolds	119

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	2.56 %
% of genes near scaffold ends (potentially truncated)	95.80 %
% of genes from short scaffolds (< 2000 bps)	92.44 %
Associated GOLD sequencing projects	94
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.29

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (93.277 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (26.050 % of family members)
Environment Ontology (ENVO)	Unclassified (30.252 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (50.420 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 24.68% β-sheet: 22.08% Coil/Unstructured: 53.25%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.29
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.29
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 119 Family Scaffolds
PF14478	DUF4430	24.37
PF04909	Amidohydro_2	8.40
PF01497	Peripla_BP_2	5.88
PF13193	AMP-binding_C	5.04
PF12681	Glyoxalase_2	2.52
PF00005	ABC_tran	1.68
PF13669	Glyoxalase_4	0.84
PF03720	UDPG_MGDP_dh_C	0.84
PF00111	Fer2	0.84
PF03480	DctP	0.84

COG ID	Name	Functional Category	% Frequency in 119 Family Scaffolds
COG0614	ABC-type Fe3+-hydroxamate transport system, periplasmic component	Inorganic ion transport and metabolism [P]	5.88
COG4558	ABC-type hemin transport system, periplasmic component	Inorganic ion transport and metabolism [P]	5.88
COG4592	ABC-type Fe2+-enterobactin transport system, periplasmic component	Inorganic ion transport and metabolism [P]	5.88
COG4594	ABC-type Fe3+-citrate transport system, periplasmic component	Inorganic ion transport and metabolism [P]	5.88
COG4607	ABC-type enterochelin transport system, periplasmic component	Inorganic ion transport and metabolism [P]	5.88

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	93.28 %
Unclassified	root	N/A	6.72 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	93.28 %
Unclassified	root	N/A	6.72 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	93.28 %
Unclassified	root	N/A	6.72 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	79.83 %
Unclassified	root	N/A	6.72 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	56.30 %
Unclassified	root	N/A	6.72 %

Name	Rank	Taxonomy	Distribution
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	33.61 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	17.65 %
Unclassified	root	N/A	6.72 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	33.61 %
unclassified Hyphomicrobiales	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales	13.45 %
Unclassified	root	N/A	6.72 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	3.36 %
Hyphomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	0.84 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	33.61 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	13.45 %
Unclassified	root	N/A	6.72 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2.52 %
Rhodoplanes	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes	0.84 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	33.61 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	13.45 %
Unclassified	root	N/A	6.72 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2.52 %
unclassified Rhodoplanes	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes	0.84 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	33.61 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	13.45 %
Unclassified	root	N/A	6.72 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2.52 %
Rhodoplanes sp. Z2-YC6860	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	0.84 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000597\|AF_2010_repII_A1DRAFT_10068227	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	903	Open in IMG/M
3300000793\|AF_2010_repII_A001DRAFT_10087768	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	661	Open in IMG/M
3300001978\|JGI24747J21853_1034966	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	583	Open in IMG/M
3300002917\|JGI25616J43925_10067689	All Organisms → cellular organisms → Bacteria	1514	Open in IMG/M
3300005332\|Ga0066388_106044873	All Organisms → cellular organisms → Bacteria → Proteobacteria	611	Open in IMG/M
3300005332\|Ga0066388_106563811	All Organisms → cellular organisms → Bacteria → Proteobacteria	586	Open in IMG/M
3300005332\|Ga0066388_108431744	All Organisms → cellular organisms → Bacteria → Proteobacteria	513	Open in IMG/M
3300005363\|Ga0008090_15904717	All Organisms → cellular organisms → Bacteria → Proteobacteria	1048	Open in IMG/M
3300005365\|Ga0070688_100459870	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	953	Open in IMG/M
3300005434\|Ga0070709_11582343	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	533	Open in IMG/M
3300005445\|Ga0070708_101849417	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	560	Open in IMG/M
3300005540\|Ga0066697_10250526	All Organisms → cellular organisms → Bacteria → Proteobacteria	1049	Open in IMG/M
3300005549\|Ga0070704_101072976	All Organisms → cellular organisms → Bacteria → Proteobacteria	731	Open in IMG/M
3300005713\|Ga0066905_100097235	All Organisms → cellular organisms → Bacteria → Proteobacteria	1988	Open in IMG/M
3300005713\|Ga0066905_100166849	All Organisms → cellular organisms → Bacteria → Proteobacteria	1607	Open in IMG/M
3300005713\|Ga0066905_100514519	All Organisms → cellular organisms → Bacteria → Proteobacteria	998	Open in IMG/M
3300005764\|Ga0066903_101057454	All Organisms → cellular organisms → Bacteria → Proteobacteria	1491	Open in IMG/M
3300005764\|Ga0066903_101407562	All Organisms → cellular organisms → Bacteria	1310	Open in IMG/M
3300005764\|Ga0066903_102487839	All Organisms → cellular organisms → Bacteria → Proteobacteria	1002	Open in IMG/M
3300005764\|Ga0066903_102647568	All Organisms → cellular organisms → Bacteria → Proteobacteria	972	Open in IMG/M
3300005764\|Ga0066903_106578573	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	605	Open in IMG/M
3300005764\|Ga0066903_107052158	All Organisms → cellular organisms → Bacteria → Proteobacteria	582	Open in IMG/M
3300005764\|Ga0066903_107798133	All Organisms → cellular organisms → Bacteria → Proteobacteria	550	Open in IMG/M
3300005981\|Ga0081538_10332793	All Organisms → cellular organisms → Bacteria	552	Open in IMG/M
3300006794\|Ga0066658_10623446	All Organisms → cellular organisms → Bacteria → Proteobacteria	589	Open in IMG/M
3300006797\|Ga0066659_10592889	All Organisms → cellular organisms → Bacteria → Proteobacteria	899	Open in IMG/M
3300006844\|Ga0075428_101056403	All Organisms → cellular organisms → Bacteria	859	Open in IMG/M
3300006845\|Ga0075421_100207269	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2423	Open in IMG/M
3300006853\|Ga0075420_101312076	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	621	Open in IMG/M
3300006953\|Ga0074063_10121418	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1823	Open in IMG/M
3300006953\|Ga0074063_10135545	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	574	Open in IMG/M
3300006969\|Ga0075419_10230848	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1232	Open in IMG/M
3300009094\|Ga0111539_13459644	Not Available	507	Open in IMG/M
3300009553\|Ga0105249_10751101	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	1038	Open in IMG/M
3300009792\|Ga0126374_10129033	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1494	Open in IMG/M
3300009840\|Ga0126313_11499944	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	560	Open in IMG/M
3300010043\|Ga0126380_11459152	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	604	Open in IMG/M
3300010045\|Ga0126311_11272407	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	610	Open in IMG/M
3300010046\|Ga0126384_11553662	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	622	Open in IMG/M
3300010047\|Ga0126382_11341488	Not Available	649	Open in IMG/M
3300010047\|Ga0126382_12067377	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	544	Open in IMG/M
3300010048\|Ga0126373_12003159	Not Available	641	Open in IMG/M
3300010360\|Ga0126372_12094200	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	614	Open in IMG/M
3300010361\|Ga0126378_13112729	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	528	Open in IMG/M
3300010366\|Ga0126379_10444078	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1357	Open in IMG/M
3300010366\|Ga0126379_11289420	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	837	Open in IMG/M
3300010366\|Ga0126379_13064258	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	559	Open in IMG/M
3300010376\|Ga0126381_101850712	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	871	Open in IMG/M
3300010398\|Ga0126383_11201207	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	848	Open in IMG/M
3300010398\|Ga0126383_11518483	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	759	Open in IMG/M
3300012198\|Ga0137364_10231809	All Organisms → cellular organisms → Bacteria → Proteobacteria	1360	Open in IMG/M
3300012199\|Ga0137383_11267739	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	527	Open in IMG/M
3300012200\|Ga0137382_10036087	All Organisms → cellular organisms → Bacteria → Proteobacteria	2997	Open in IMG/M
3300012201\|Ga0137365_11253342	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	528	Open in IMG/M
3300012359\|Ga0137385_11450389	Not Available	550	Open in IMG/M
3300012972\|Ga0134077_10321031	All Organisms → cellular organisms → Bacteria → Proteobacteria	654	Open in IMG/M
3300013306\|Ga0163162_10275732	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1814	Open in IMG/M
3300014968\|Ga0157379_10781159	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	900	Open in IMG/M
3300015077\|Ga0173483_10302969	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	783	Open in IMG/M
3300015371\|Ga0132258_10563623	All Organisms → cellular organisms → Bacteria → Proteobacteria	2856	Open in IMG/M
3300016357\|Ga0182032_10455696	All Organisms → cellular organisms → Bacteria	1044	Open in IMG/M
3300016371\|Ga0182034_11178663	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	666	Open in IMG/M
3300021339\|Ga0193706_1103479	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	775	Open in IMG/M
3300021418\|Ga0193695_1042257	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	988	Open in IMG/M
3300021478\|Ga0210402_10767770	All Organisms → cellular organisms → Bacteria → Proteobacteria	889	Open in IMG/M
3300025918\|Ga0207662_10758972	All Organisms → cellular organisms → Bacteria	682	Open in IMG/M
3300025941\|Ga0207711_11061921	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	750	Open in IMG/M
3300025942\|Ga0207689_10369184	Not Available	1194	Open in IMG/M
3300026326\|Ga0209801_1169809	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	905	Open in IMG/M
3300026846\|Ga0208273_102082	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	651	Open in IMG/M
3300027523\|Ga0208890_1028432	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	834	Open in IMG/M
3300027703\|Ga0207862_1210636	All Organisms → cellular organisms → Bacteria → Proteobacteria	575	Open in IMG/M
3300027874\|Ga0209465_10183697	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1042	Open in IMG/M
3300027909\|Ga0209382_11861663	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	583	Open in IMG/M
3300028711\|Ga0307293_10195513	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	644	Open in IMG/M
3300028712\|Ga0307285_10125075	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	692	Open in IMG/M
3300028712\|Ga0307285_10212890	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	543	Open in IMG/M
3300028714\|Ga0307309_10026864	All Organisms → cellular organisms → Bacteria	1157	Open in IMG/M
3300028771\|Ga0307320_10435781	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	527	Open in IMG/M
3300028778\|Ga0307288_10341507	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	602	Open in IMG/M
3300028885\|Ga0307304_10456002	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	582	Open in IMG/M
3300031545\|Ga0318541_10063588	All Organisms → cellular organisms → Bacteria → Proteobacteria	1920	Open in IMG/M
3300031564\|Ga0318573_10056192	All Organisms → cellular organisms → Bacteria → Proteobacteria	1935	Open in IMG/M
3300031573\|Ga0310915_10335569	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1070	Open in IMG/M
3300031680\|Ga0318574_10079406	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1787	Open in IMG/M
3300031680\|Ga0318574_10515339	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	701	Open in IMG/M
3300031719\|Ga0306917_10312600	All Organisms → cellular organisms → Bacteria → Proteobacteria	1215	Open in IMG/M
3300031720\|Ga0307469_10918807	All Organisms → cellular organisms → Bacteria	812	Open in IMG/M
3300031736\|Ga0318501_10075213	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1640	Open in IMG/M
3300031736\|Ga0318501_10213810	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1012	Open in IMG/M
3300031744\|Ga0306918_10185985	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1558	Open in IMG/M
3300031747\|Ga0318502_10217535	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1108	Open in IMG/M
3300031765\|Ga0318554_10803659	All Organisms → cellular organisms → Bacteria → Proteobacteria	526	Open in IMG/M
3300031769\|Ga0318526_10056229	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1511	Open in IMG/M
3300031771\|Ga0318546_10068443	All Organisms → cellular organisms → Bacteria → Proteobacteria	2260	Open in IMG/M
3300031782\|Ga0318552_10065550	All Organisms → cellular organisms → Bacteria	1746	Open in IMG/M
3300031793\|Ga0318548_10066380	All Organisms → cellular organisms → Bacteria	1681	Open in IMG/M
3300031796\|Ga0318576_10076399	All Organisms → cellular organisms → Bacteria	1497	Open in IMG/M
3300031796\|Ga0318576_10149188	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1089	Open in IMG/M
3300031798\|Ga0318523_10112053	All Organisms → cellular organisms → Bacteria	1344	Open in IMG/M
3300031798\|Ga0318523_10329103	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	761	Open in IMG/M
3300031831\|Ga0318564_10105618	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1252	Open in IMG/M
3300031879\|Ga0306919_10032334	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	3312	Open in IMG/M
3300031893\|Ga0318536_10633167	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	534	Open in IMG/M
3300031894\|Ga0318522_10124068	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	966	Open in IMG/M
3300031941\|Ga0310912_10739346	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	761	Open in IMG/M
3300031942\|Ga0310916_11185327	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	632	Open in IMG/M
3300032001\|Ga0306922_10207001	All Organisms → cellular organisms → Bacteria	2105	Open in IMG/M
3300032025\|Ga0318507_10072525	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1398	Open in IMG/M
3300032041\|Ga0318549_10053428	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1673	Open in IMG/M
3300032041\|Ga0318549_10059979	All Organisms → cellular organisms → Bacteria	1591	Open in IMG/M
3300032059\|Ga0318533_11229548	All Organisms → cellular organisms → Bacteria → Proteobacteria	548	Open in IMG/M
3300032064\|Ga0318510_10044858	All Organisms → cellular organisms → Bacteria	1544	Open in IMG/M
3300032075\|Ga0310890_10177535	Not Available	1438	Open in IMG/M
3300032090\|Ga0318518_10165128	All Organisms → cellular organisms → Bacteria	1128	Open in IMG/M
3300032091\|Ga0318577_10147850	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1117	Open in IMG/M
3300033290\|Ga0318519_10010046	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	3838	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	88.24%
Host-Associated	Host-Associated	11.76%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	88.24%
Plants	Host-Associated → Plants	11.76%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	88.24%
Rhizosphere	Host-Associated → Plants → Rhizosphere	7.56%
Rhizoplane	Host-Associated → Plants → Rhizoplane	3.36%
Roots	Host-Associated → Plants → Roots	0.84%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	70.59%
Loam	Environmental → Terrestrial → Soil → Loam	17.65%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	7.56%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	2.52%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.84%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.84%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	33.61%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	31.09%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	13.45%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	7.56%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	4.20%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	4.20%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	2.52%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	0.84%
Tropical Rainforest	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest	0.84%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.84%
Unclassified	Host-Associated → Plants → Roots → Rhizosphere → Unclassified	0.84%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	26.05%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	13.45%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	11.76%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	8.40%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	5.04%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	5.04%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	5.04%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	3.36%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	3.36%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	2.52%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	1.68%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	1.68%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	1.68%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	1.68%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	0.84%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.84%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.84%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	0.84%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.84%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	0.84%
Corn, Switchgrass And Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	0.84%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.84%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Unclassified → Tabebuia Heterophylla Rhizosphere	0.84%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.84%
Tropical Rainforest Soil	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest → Tropical Rainforest Soil	0.84%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000597	Forest soil microbial communities from Amazon forest - 2010 replicate II A1	Environmental	Open in IMG/M
3300000793	Forest soil microbial communities from Amazon forest - 2010 replicate II A001	Environmental	Open in IMG/M
3300001978	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6	Host-Associated	Open in IMG/M
3300002917	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_100cm	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005363	Tropical rainforest soil microbial communities from the Amazon Forest, Brazil, analyzing deforestation - Metatranscriptome F II A100 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300005365	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3H metaG	Environmental	Open in IMG/M
3300005434	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG	Environmental	Open in IMG/M
3300005445	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG	Environmental	Open in IMG/M
3300005540	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_146	Environmental	Open in IMG/M
3300005549	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG	Environmental	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005981	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1	Host-Associated	Open in IMG/M
3300006794	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_107	Environmental	Open in IMG/M
3300006797	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_108	Environmental	Open in IMG/M
3300006844	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2	Host-Associated	Open in IMG/M
3300006845	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5	Host-Associated	Open in IMG/M
3300006853	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD4	Host-Associated	Open in IMG/M
3300006953	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHMB (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006969	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD3	Host-Associated	Open in IMG/M
3300009094	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)	Host-Associated	Open in IMG/M
3300009553	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG	Host-Associated	Open in IMG/M
3300009792	Tropical forest soil microbial communities from Panama - MetaG Plot_12	Environmental	Open in IMG/M
3300009840	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105A	Environmental	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010045	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot61	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300012198	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_20_16 metaG	Environmental	Open in IMG/M
3300012199	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_40_16 metaG	Environmental	Open in IMG/M
3300012200	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_20_16 metaG	Environmental	Open in IMG/M
3300012201	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_40_16 metaG	Environmental	Open in IMG/M
3300012356	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_40_16 metaG	Environmental	Open in IMG/M
3300012359	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_80_16 metaG	Environmental	Open in IMG/M
3300012972	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_40cm_5_24_1 metaG	Environmental	Open in IMG/M
3300013306	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG	Host-Associated	Open in IMG/M
3300014968	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG	Host-Associated	Open in IMG/M
3300015077	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S178-409R-2 (version 2)	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300016357	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000	Environmental	Open in IMG/M
3300016371	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172	Environmental	Open in IMG/M
3300021339	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U3c1	Environmental	Open in IMG/M
3300021418	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L3s2	Environmental	Open in IMG/M
3300021478	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M	Environmental	Open in IMG/M
3300025918	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG (SPAdes)	Environmental	Open in IMG/M
3300025941	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025942	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026326	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_127 (SPAdes)	Environmental	Open in IMG/M
3300026846	Soil and rhizosphere microbial communities from Laval, Canada - mgHMA (SPAdes)	Environmental	Open in IMG/M
3300027523	Soil and rhizosphere microbial communities from Laval, Canada - mgHPA (SPAdes)	Environmental	Open in IMG/M
3300027703	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 81 (SPAdes)	Environmental	Open in IMG/M
3300027874	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio (SPAdes)	Environmental	Open in IMG/M
3300027909	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5 (SPAdes)	Host-Associated	Open in IMG/M
3300028711	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_150	Environmental	Open in IMG/M
3300028712	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_139	Environmental	Open in IMG/M
3300028714	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_196	Environmental	Open in IMG/M
3300028771	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_369	Environmental	Open in IMG/M
3300028778	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_142	Environmental	Open in IMG/M
3300028885	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_185	Environmental	Open in IMG/M
3300031545	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f26	Environmental	Open in IMG/M
3300031564	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f21	Environmental	Open in IMG/M
3300031573	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111	Environmental	Open in IMG/M
3300031680	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f22	Environmental	Open in IMG/M
3300031719	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2)	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300031736	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f21	Environmental	Open in IMG/M
3300031744	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)	Environmental	Open in IMG/M
3300031747	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f22	Environmental	Open in IMG/M
3300031765	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f22	Environmental	Open in IMG/M
3300031769	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f24	Environmental	Open in IMG/M
3300031771	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f19	Environmental	Open in IMG/M
3300031782	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f20	Environmental	Open in IMG/M
3300031793	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f21	Environmental	Open in IMG/M
3300031796	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f24	Environmental	Open in IMG/M
3300031798	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f19	Environmental	Open in IMG/M
3300031831	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f20	Environmental	Open in IMG/M
3300031879	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2)	Environmental	Open in IMG/M
3300031893	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f28	Environmental	Open in IMG/M
3300031894	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f18	Environmental	Open in IMG/M
3300031941	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX080	Environmental	Open in IMG/M
3300031942	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF176	Environmental	Open in IMG/M
3300032001	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)	Environmental	Open in IMG/M
3300032025	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f20	Environmental	Open in IMG/M
3300032041	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f22	Environmental	Open in IMG/M
3300032059	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f27	Environmental	Open in IMG/M
3300032064	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f17	Environmental	Open in IMG/M
3300032075	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D3	Environmental	Open in IMG/M
3300032090	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f22	Environmental	Open in IMG/M
3300032091	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f25	Environmental	Open in IMG/M
3300033290	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f15	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
AF_2010_repII_A1DRAFT_100682273	3300000597	Forest Soil	AHRVTGGRVASIGLRLAEDDAPATLPAKLKKAARDLWSRLG*
AF_2010_repII_A001DRAFT_100877681	3300000793	Forest Soil	GGRVASIGLRLAEDDAPATLPAKLKKAARDLWSRLG*
JGI24747J21853_10349661	3300001978	Corn, Switchgrass And Miscanthus Rhizosphere	LVAHRMASGRVTSVGLRLAEDDTPPATISGRIKKRARDLWKRFG*
JGI25616J43925_100676891	3300002917	Grasslands Soil	LVAHRVVNGRVTSVGLRLAEDDAPATLPAKLKKAARDLWSRLG*
Ga0066388_1011502943	3300005332	Tropical Forest Soil	PIALLAHRVTDGRVTSVGLRLPEDEAAPTTLAARLKKVARDLWALWG*
Ga0066388_1060448732	3300005332	Tropical Forest Soil	KRRPKQGDIVPLGPIALVAHRVTGGRVASIGLRLAEDDALPATLPAKLKKAARDLWSRLG
Ga0066388_1065638112	3300005332	Tropical Forest Soil	PLGPIALVAHRVVNGRVTSVGLRLAEDEAPATLPAKLKKAARDLWSRLG*
Ga0066388_1084317442	3300005332	Tropical Forest Soil	AHRVTGGRVASIGLRLAEDDAPPATLPAKLKKAARDLWSRLG*
Ga0008090_159047173	3300005363	Tropical Rainforest Soil	VAHRVANGRVTSVGLRLAEDDAPPATLPAKLKKAARDLWSRLW*
Ga0070688_1004598701	3300005365	Switchgrass Rhizosphere	ALVAHRVADGRVSSVGLRLAEDDTPPATVSARLKKLARDLWRRFG*
Ga0070709_115823432	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	MASGRVTSVGLRLAEDDTPPATISGRIKKLARDLWKRFG*
Ga0070708_1018494172	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	GPIALLAHQVANGRVTSVGLRLPEDDEEPTTVPARLRLAARNLWQRIR*
Ga0066697_102505261	3300005540	Soil	GPIALVAHRVTDGRLSNVGLRLAQEEEPPATLAAKIKKTARELWSRLG*
Ga0070704_1010729761	3300005549	Corn, Switchgrass And Miscanthus Rhizosphere	PLGPIALVAHRVANGRVTSVGLRLAEDDAPATLPAKLKKAARDLWSRLG*
Ga0066905_1000972354	3300005713	Tropical Forest Soil	PLGPIALVAHRVTGGRVASIGLRLAEDDAPPATLPAKLKRAARDLWSRLG*
Ga0066905_1001668491	3300005713	Tropical Forest Soil	ALVAHRVANGRVVSIGLRLAEDDAPPATLPAKLKKAARDLWSRLG*
Ga0066905_1005145191	3300005713	Tropical Forest Soil	VVPLGPIALVAHRVTDGRLASVGLRLAQADEPPATLAAKLKKAARDLWSRLG*
Ga0066903_1010574545	3300005764	Tropical Forest Soil	IALVAHRVANGRVASIGLRLAEDEAPPATLPAKLKKAARDLWSRLG*
Ga0066903_1014075622	3300005764	Tropical Forest Soil	RVTGGRVASIGLRLAEDDAPATLPAKLKKAARDLWSRLG*
Ga0066903_1024878391	3300005764	Tropical Forest Soil	PLGPIALVAHRVANGRVASIGLRLAEDEAPPATLPAKLKRAARDLWSRLG*
Ga0066903_1026475683	3300005764	Tropical Forest Soil	GPIALVAHRVTGGRVASIGLRLAEDDAPPATLPAKLKRAARDLWSRLG*
Ga0066903_1065785731	3300005764	Tropical Forest Soil	AHRVNRGRVTSVGLRLAEDEELAATIAGKLRKAARDLWARLG*
Ga0066903_1070521581	3300005764	Tropical Forest Soil	IALVAHRVTGGRVASIGLRLAEDDAPPATLPAKLKKAARDLWSRLG*
Ga0066903_1077981332	3300005764	Tropical Forest Soil	AHRVTDGRVTSVGLRLPEDDAEPATLAAKLKKAARDLWTRLS*
Ga0081538_103327931	3300005981	Tabebuia Heterophylla Rhizosphere	AHRVANGRVSSVGLRLADDDAAPTTLAARLKNAARDLWAWWG*
Ga0066658_106234461	3300006794	Soil	LMIIPGHADLACDVVPLGPIALVAHRVTDGRLSNVGLRLAQEEEPPATLAAKIKKTARELWSRLG*
Ga0066659_105928893	3300006797	Soil	ALVAHRVTDGRLASVGLRLAQEEELPATLAAKIKKTARDLWLRLG*
Ga0075428_1010564032	3300006844	Populus Rhizosphere	GDIVPLGPIALLAHRVTDGRVTSVGLRLAEDDAGPTTLATRLKKVARDLWARWG*
Ga0075421_1002072691	3300006845	Populus Rhizosphere	DIVPLGPIALLAHRVTDGRVTSVGLRLAEDDAGPTTLATRLKKVARDLWARWG*
Ga0075420_1013120762	3300006853	Populus Rhizosphere	QLGPIALVAHRVADGRVSSVGLRLAEDDTPPATVSARLKKLARDLWRRFG*
Ga0074063_101214181	3300006953	Soil	QLGPIALVAHRMASGRVTSVGLRLAEDDTPPATISGRIKKRARDLWKRFG*
Ga0074063_101355452	3300006953	Soil	QLGPIALVAHRMASGRVTSVGLRLAEDDTPPATISGRIKKLARDLWKRFG*
Ga0075419_102308482	3300006969	Populus Rhizosphere	RPRQDDIVPLGPIALLAHRVTDGRVTSVGLRLAEDDAGPTTLATRLKKVARDLWARWG*
Ga0111539_134596442	3300009094	Populus Rhizosphere	LGPIALVAHRVANGRLASVGLRLAQDEEPATLAAKLKKAARDLWSRLE*
Ga0105249_107511011	3300009553	Switchgrass Rhizosphere	GPIALVAHRMASGRVTSVGLRLAEDDTPPATISGRIKKLARDLWKRFG*
Ga0126374_101290334	3300009792	Tropical Forest Soil	VASIGLRLAEDEAPPATLPAKLKRAARDLWSRLG*
Ga0126313_114999441	3300009840	Serpentine Soil	HRVASGRVTNVGVRLAEDDTPPATISGRIKKLARDLWKRFG*
Ga0126380_114591522	3300010043	Tropical Forest Soil	VPLGPIALVAHRVTGGRVASIGLRLAEDDAPATLPAKLKKAARDLWSRLG*
Ga0126311_112724072	3300010045	Serpentine Soil	ASGRVTNVGLRLAEDDTPPATISGRIKKLARDLWKRFG*
Ga0126384_115536622	3300010046	Tropical Forest Soil	GRVASIGLRLAEDDAPPATLPAKLKRAARDLWSRLG*
Ga0126382_113414882	3300010047	Tropical Forest Soil	PLGPIALVAHRVADGRLASVGLRLAQDEEPATLAAKLKKAARDLWSRLG*
Ga0126382_120673771	3300010047	Tropical Forest Soil	LGPIALVAHRVTGGRVASIGLRLAEDDAPPATLPAKLKRAARDLWSRLG*
Ga0126373_120031591	3300010048	Tropical Forest Soil	PLGPIALVAHRVANGRLASVGLRLAQDEEPTTLAAKLKKAASDLWSRLG*
Ga0126372_120942001	3300010360	Tropical Forest Soil	KQGDIVPLGPIAFVAHRVTGGRVVSIGLRLAEDDAPATLPAKLKKAARDLWSRLG*
Ga0126378_131127291	3300010361	Tropical Forest Soil	KQGDIVPLGPIALVAHRVTGGRVASIGLRLAEDDVPATLPAKLKKAARDLWSRLG*
Ga0126379_104440781	3300010366	Tropical Forest Soil	LVAHRVANGRLASVGLRLAQDEEPATLAAKLKKAARDLWARLG*
Ga0126379_112894202	3300010366	Tropical Forest Soil	LGPIALVAHRVVNGRVTSVGLRLAEDEAPATLPAKLKKAARDLWSRLG*
Ga0126379_130642581	3300010366	Tropical Forest Soil	PIALVAHRVTGGRVASIGLRLAEDDAPPATLPAKLKKAARDLWSRLG*
Ga0126381_1018507121	3300010376	Tropical Forest Soil	VPLGPIALVAHRVANGRVASIGLRLAEDEAPPATLPAKLKKAARDLWSRLG*
Ga0126383_112012072	3300010398	Tropical Forest Soil	VPLGPIALVAHRVTGGRVASIGLRLAEDDAPPATLPAKLKRAARDLWSRLG*
Ga0126383_115184832	3300010398	Tropical Forest Soil	VPLGPIALVAHRVTGGRVASIGLRLAEDDAPPATLPAKLKKAVRDLWSRLG*
Ga0137364_102318093	3300012198	Vadose Zone Soil	PLGPIALVAHRVTDGRLASVGLRLAQDEEPATLVAKVKKAARDLWARLG*
Ga0137383_112677391	3300012199	Vadose Zone Soil	HRVVNGRVTSVGLRLAEEEVPATLPAKLKKAARDLWSRFG*
Ga0137382_100360874	3300012200	Vadose Zone Soil	ALVAHRVTAGRLASVGLRLAQDEEPATLAAKLKKAARDLWARLG*
Ga0137365_112533422	3300012201	Vadose Zone Soil	GAIALVAHRDTDGRLMSVGLRLAQDEEPPANLVAKLKKAARDLWTRLG*
Ga0137371_103767161	3300012356	Vadose Zone Soil	HRVTEGRLASVGLRLAREEELPATLAAKIKKTARELWSRLG*
Ga0137385_114503891	3300012359	Vadose Zone Soil	PLGPIALLAHQVVNGRVTSVGLRLPEDDEEPTTVMARLKQAARKLWKRIG*
Ga0134077_103210311	3300012972	Grasslands Soil	VPLGPIALVAHRVTDGRLANVGLRLAQEEEPPATLAAKIKKTARELWSRLG*
Ga0163162_102757324	3300013306	Switchgrass Rhizosphere	LVAHRVANGRLASVGLRLAQDEEPATLAAKLKKAARDLWSHLG*
Ga0157379_107811592	3300014968	Switchgrass Rhizosphere	VVQLGPIALVAHRMASGRVTSVGLRLAEDDTPPATISGRIKKRARDLWKRFG*
Ga0173483_103029692	3300015077	Soil	GPIALVAHRVADGRVSSVGLRLAEDDTPPATVSARLKKLARDLWRRFG*
Ga0132258_105636236	3300015371	Arabidopsis Rhizosphere	LVAHRVADGRLASVGLRLAQDEEPATLAAKLKKAARDLWSRLG*
Ga0182032_104556963	3300016357	Soil	PLGPIALVAHRVADGRLASVGLRLAEDEESPATLAAKIKKAVRDVWSFLG
Ga0182034_111786631	3300016371	Soil	PIALVAHRVANGRVTSVGLRLAEDDAPATLPAKLKKVARDLWSRLG
Ga0193706_11034792	3300021339	Soil	VASGRVTNVGLRLAEDDTPPATISGRIKKLARDLWKRFG
Ga0193695_10422571	3300021418	Soil	VVQLGPIALVAHRVANGRVSSVGLRLAEDDAPPTTISGRLKKLAWDLWKRFG
Ga0210402_107677702	3300021478	Soil	VVPLGPIALLVHQVTSGRVTSVGLRLPEDDEQPATTLARLKQVARNLWKRLG
Ga0207662_107589722	3300025918	Switchgrass Rhizosphere	VAHRVADGRVSSVGLRLAEDDTPPATVSARLKKLARDLWRRFG
Ga0207711_110619212	3300025941	Switchgrass Rhizosphere	VQLGPIALVAHRMASGRVTSVGLRLAEDDTPPATISGRIKKLARDLWKRFG
Ga0207689_103691841	3300025942	Miscanthus Rhizosphere	ALVAHRVANGRLASVGLRLAQDEEPATLVAKLKKAARDLWSRLE
Ga0209801_11698093	3300026326	Soil	ALVAHRVANGRVTSVGLRLAEDDAPATLPAKLKKAARDLWSRLG
Ga0208273_1020822	3300026846	Soil	RVTSVGLRLAEDDTPPATISGRIKKVARDLWKRFG
Ga0208890_10284321	3300027523	Soil	GPIALVAHRVANGRVSSVGLRLAEDDAPPTTMSGRLKKLASDLWKRFG
Ga0207862_12106361	3300027703	Tropical Forest Soil	VVPLGPIALIAHRVTDGRVTSIGLRLAEEDVEPTTIVARLKKSVRDLWSAIG
Ga0209465_101836971	3300027874	Tropical Forest Soil	ALVAHRVTGGRVASIGLRLAVDDAPATLPAKLKKAARDLWSRLG
Ga0209382_118616632	3300027909	Populus Rhizosphere	PIALVAHRVANGRLASVGLRLAQDEEPATLAAKLKKAARDLWARWG
Ga0307293_101955132	3300028711	Soil	RVTSVGLRLPEDDEEPATVVARLKKAARDLRKRLG
Ga0307285_101250751	3300028712	Soil	QGDVVQLGPIALVAHRMASGRVTSVGLRLAEDDTPPATISGKIKKLARDLWKRFG
Ga0307285_102128901	3300028712	Soil	VVQLGPIALVAHRVANGRVISVGLRLADDDAPPTTMSGRLKKLAWDLWKRFG
Ga0307309_100268641	3300028714	Soil	DVVQLGPIALVAHRMASGRVTSVGLRLAEDDTPPATISGKIKKLARDLWKRFG
Ga0307320_104357812	3300028771	Soil	ANGRVSSVGLRLADDDAPPTTMSGRLKKLAWDLWKRFG
Ga0307288_103415072	3300028778	Soil	ASGRVTSVGLRLAEDDTPPATISGKIKKLARDLWKRFG
Ga0307304_104560021	3300028885	Soil	LGPIALVAHRVANGRVSSVGLRLADDDAPPTTMSGRLKKLAWDLWKRFG
Ga0318541_100635885	3300031545	Soil	LLSLAGSVASVGLRLAEDDAPATLPAKLKRAARDLWSRLG
Ga0318573_100561922	3300031564	Soil	GDIVPLGPIALVAHRVTGGRVASIGLRLAEDDAPATLAAKLKKAARDLWSRLG
Ga0310915_103355693	3300031573	Soil	PKQGDIVPLGPIALVAHRVTGGRVASIGLRLAEDDAQPATLPAKLKKAARDLWARLG
Ga0318574_100794064	3300031680	Soil	LGPIALVAHRVANGRITSVGLRLAEDDAPTTLPAKLKRAARDLWSRLG
Ga0318574_105153391	3300031680	Soil	ASYLADELKRKPKQGDVMPLGPIALIAHRVTDGRVTSIGLRLAEEEIEPTTFVARLKKSMRDLWSVIG
Ga0306917_103126003	3300031719	Soil	KQGDVVPLGPIALVAHRVANGRVTSVGLRLAEDDAPATLPAKLKKVARDLWSRLG
Ga0307469_109188071	3300031720	Hardwood Forest Soil	GPIALLAHRVTDGRVTSVGLRLPEDDAEPTTLATRLKKAARDLWALWG
Ga0318501_100752134	3300031736	Soil	PLGPIALVAHRVTGGRVASIGLRLAEDDAQPATLPAKLKKAARDLWARLG
Ga0318501_102138102	3300031736	Soil	LGPIALVAHRVVNGRVTSVGLRLAEDEAPATLAAKLKKAARDLWSRLG
Ga0306918_101859854	3300031744	Soil	LGPIALVAHRVANGRVTSVGLRLAEDDAPATLPAKLKKVARDLWSRLG
Ga0318502_102175351	3300031747	Soil	KRRPKQGDIVPLGPIALVAHRVTGGRVASIGLRLAEDDAQPATLPAKLKKAARDLWARLG
Ga0318554_108036592	3300031765	Soil	AIGPSGTIALLAHQVANGRVTSVGLRLPEDDEEPATAVARLKLGARKLWQHIK
Ga0318526_100562294	3300031769	Soil	LVTRPIALVAHRVANGRVTNVGLRLAEDDAPATLPAKLKKVARDLWSRLG
Ga0318546_100684435	3300031771	Soil	LGPIALVAHRVANGRVASVGLRLAEDDAPATLPAKLKRAARDLWSRLG
Ga0318552_100655502	3300031782	Soil	AHRVTGGRVASIGLRLAEDDAPATLPAKLKKAARDLWSRLG
Ga0318548_100663804	3300031793	Soil	VANGRVTSVGLRLAEDDAPATLPAKLKKAARDLWSRLG
Ga0318576_100763994	3300031796	Soil	HRVANGRVTSVGLRLAEDDAPATLPAKLKKAARDLWSRLG
Ga0318576_101491881	3300031796	Soil	GDIVPLGPIALVAHRVTGGRVASIGLRLAEDDAQPATLPAKLMKAARDLWARLG
Ga0318523_101120533	3300031798	Soil	QGDVVPLGPIALVTHRVANGRVTSVGLRLAEDDAPATLPAKLKKAARDLWSRLG
Ga0318523_103291032	3300031798	Soil	IKHRPKQGDIVPLGPIALVAHRVTGGRVASIGLRLAEDDAQPATLPAKLKKAARDLWARL
Ga0318564_101056183	3300031831	Soil	KQGDIVPLGPIALVAHRVTGGRVASIGLRLAEDDAPATLPAKLKKAARDLWSRLW
Ga0306919_100323341	3300031879	Soil	GRVTSVGLRLAEDDAPATLPAKLKKAARDLWSRLG
Ga0318536_106331672	3300031893	Soil	LVAHRVANGRVASVGLRLAEDDAPATLPAKLKKAARDLWSRLG
Ga0318522_101240683	3300031894	Soil	VPLGPIALVAHRVTGGRVASIGLRLAEDDAQPATLPAKLKKAARDLWARLG
Ga0310912_107393461	3300031941	Soil	HRPKQGDIVPLGPIALVAHRVTGGRVASIGLRLAEDDAQPATLPAKLKKAARDLWARLG
Ga0310916_111853272	3300031942	Soil	LVAHRVVNGRVTSMGLRLAEDEAPATLPAKLKRVARDLWSRLG
Ga0306922_102070014	3300032001	Soil	NGRVTSVGLRLAEDDAPATLPAKLKKAARDLWSRLG
Ga0318507_100725254	3300032025	Soil	DIVPLGPIALVAHRVTGGRVASIGLRLAEDDAQPATLPAKLKKAARDLWARLG
Ga0318549_100534284	3300032041	Soil	PLGPIALVAHRVANGRVTNVGLRLAEDDAPATLPAKLKKVARDLWSRLG
Ga0318549_100599791	3300032041	Soil	VPLGPIALVAHRVTGGRVASIGLRLAEDDAPATLAAKLKKAARDLWSRLG
Ga0318533_112295481	3300032059	Soil	GTIALVAHRVTDGRASTIGLRLAGEEEKPASLVGKVKKTVHDLWSAFG
Ga0318510_100448582	3300032064	Soil	KQGDIVPLGPIALVAHRVTGGRVASIGLRLAEDDAPATLPAKLKKAARDLWSRLG
Ga0310890_101775352	3300032075	Soil	VVQLGPIALVAHRMASGRVTSVGLRLAEDDTPPATISGRIKKLARDLWKRFG
Ga0318518_101651281	3300032090	Soil	VADGRLASVGLRLAEDEESPATLAAKIKKAVRDVWSFLG
Ga0318577_101478503	3300032091	Soil	NGRVTNVGLRLAEDDAPATLPAKLKKVARDLWSRLG
Ga0318519_100100464	3300033290	Soil	IALVAHRVTGGRVASIGLRLAEDDAPATLPAKLKKAARDLWSRLG

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F074665

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences