Metagenome / Metatranscriptome Family F074370

Basic Information
Family ID	F074370
Family Type	Metagenome / Metatranscriptome
Number of Sequences	119
Average Sequence Length	49 residues
Representative Sequence	MADELAKKLAEAKKKMFGAQQPSGKTIILVKGDALIKSADPKVEVRQQE
Number of Associated Samples	42
Number of Associated Scaffolds	119

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	89.74 %
% of genes near scaffold ends (potentially truncated)	14.29 %
% of genes from short scaffolds (< 2000 bps)	81.51 %
Associated GOLD sequencing projects	38
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.35

Most Common Taxonomy
Group	Unclassified (100.000 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Groundwater (51.261 % of family members)
Environment Ontology (ENVO)	Unclassified (51.261 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Subsurface (non-saline) (61.345 % of family members)

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 19.48% β-sheet: 0.00% Coil/Unstructured: 80.52%
Feature Viewer

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Pfam ID	Name	% Frequency in 119 Family Scaffolds
PF12728	HTH_17	0.84
PF13392	HNH_3	0.84
PF02768	DNA_pol3_beta_3	0.84

COG ID	Name	Functional Category	% Frequency in 119 Family Scaffolds
COG0592	DNA polymerase III sliding clamp (beta) subunit, PCNA homolog	Replication, recombination and repair [L]	0.84

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	100.00 %

Scaffold	Taxonomy	Length	IMG/M Link
3300003141\|Ga0052246_1023422	Not Available	797	Open in IMG/M
3300003141\|Ga0052246_1032960	Not Available	719	Open in IMG/M
3300003143\|Ga0052245_1038092	Not Available	628	Open in IMG/M
3300005918\|Ga0075116_10285776	Not Available	603	Open in IMG/M
3300005935\|Ga0075125_10069923	Not Available	1545	Open in IMG/M
3300005935\|Ga0075125_10235801	Not Available	742	Open in IMG/M
3300005935\|Ga0075125_10371070	Not Available	555	Open in IMG/M
3300005939\|Ga0075123_10284965	Not Available	609	Open in IMG/M
3300008470\|Ga0115371_10020599	Not Available	936	Open in IMG/M
3300008470\|Ga0115371_10083157	Not Available	707	Open in IMG/M
3300008470\|Ga0115371_10432453	Not Available	700	Open in IMG/M
3300008516\|Ga0111033_1233544	Not Available	1666	Open in IMG/M
3300008517\|Ga0111034_1169232	Not Available	1555	Open in IMG/M
3300009149\|Ga0114918_10000628	Not Available	30641	Open in IMG/M
3300009488\|Ga0114925_10033455	Not Available	3021	Open in IMG/M
3300009488\|Ga0114925_10603367	Not Available	777	Open in IMG/M
3300009499\|Ga0114930_10009378	Not Available	7479	Open in IMG/M
3300009499\|Ga0114930_10018431	Not Available	4898	Open in IMG/M
3300010242\|Ga0136484_1005045	Not Available	571	Open in IMG/M
3300010242\|Ga0136484_1005873	Not Available	550	Open in IMG/M
3300012931\|Ga0153915_10714428	Not Available	1158	Open in IMG/M
3300013089\|Ga0163203_1004355	Not Available	3937	Open in IMG/M
3300013089\|Ga0163203_1020078	Not Available	1907	Open in IMG/M
(restricted) 3300013127\|Ga0172365_10103641	Not Available	1813	Open in IMG/M
(restricted) 3300013129\|Ga0172364_10494435	Not Available	775	Open in IMG/M
3300014613\|Ga0180008_1026340	Not Available	2383	Open in IMG/M
3300014613\|Ga0180008_1038188	Not Available	1942	Open in IMG/M
3300014613\|Ga0180008_1065248	Not Available	1444	Open in IMG/M
3300014613\|Ga0180008_1072068	Not Available	1367	Open in IMG/M
3300014613\|Ga0180008_1074002	Not Available	1346	Open in IMG/M
3300014613\|Ga0180008_1082427	Not Available	1267	Open in IMG/M
3300014613\|Ga0180008_1252507	Not Available	672	Open in IMG/M
3300014613\|Ga0180008_1298979	Not Available	610	Open in IMG/M
3300014613\|Ga0180008_1316639	Not Available	591	Open in IMG/M
3300014656\|Ga0180007_10065668	Not Available	2525	Open in IMG/M
3300014656\|Ga0180007_10121289	Not Available	1723	Open in IMG/M
3300014656\|Ga0180007_10127686	Not Available	1669	Open in IMG/M
3300014656\|Ga0180007_10143127	Not Available	1557	Open in IMG/M
3300014656\|Ga0180007_10152987	Not Available	1495	Open in IMG/M
3300014656\|Ga0180007_10172063	Not Available	1392	Open in IMG/M
3300014656\|Ga0180007_10187496	Not Available	1322	Open in IMG/M
3300014656\|Ga0180007_10188356	Not Available	1318	Open in IMG/M
3300014656\|Ga0180007_10195421	Not Available	1288	Open in IMG/M
3300014656\|Ga0180007_10278456	Not Available	1040	Open in IMG/M
3300014656\|Ga0180007_10355110	Not Available	898	Open in IMG/M
3300014656\|Ga0180007_10361201	Not Available	889	Open in IMG/M
3300014656\|Ga0180007_10368128	Not Available	878	Open in IMG/M
3300014656\|Ga0180007_10376330	Not Available	867	Open in IMG/M
3300014656\|Ga0180007_10382392	Not Available	859	Open in IMG/M
3300014656\|Ga0180007_10384582	Not Available	856	Open in IMG/M
3300014656\|Ga0180007_10396973	Not Available	839	Open in IMG/M
3300014656\|Ga0180007_10412774	Not Available	820	Open in IMG/M
3300014656\|Ga0180007_10430159	Not Available	800	Open in IMG/M
3300014656\|Ga0180007_10489338	Not Available	741	Open in IMG/M
3300014656\|Ga0180007_10574363	Not Available	674	Open in IMG/M
3300014656\|Ga0180007_10663883	Not Available	620	Open in IMG/M
3300014656\|Ga0180007_10834860	Not Available	543	Open in IMG/M
3300014656\|Ga0180007_10886207	Not Available	525	Open in IMG/M
3300014656\|Ga0180007_10906392	Not Available	518	Open in IMG/M
3300015370\|Ga0180009_10104597	Not Available	1473	Open in IMG/M
3300015370\|Ga0180009_10116154	Not Available	1360	Open in IMG/M
3300015370\|Ga0180009_10121908	Not Available	1311	Open in IMG/M
3300015370\|Ga0180009_10143221	Not Available	1160	Open in IMG/M
3300015370\|Ga0180009_10150877	Not Available	1114	Open in IMG/M
3300015370\|Ga0180009_10179652	Not Available	978	Open in IMG/M
3300015370\|Ga0180009_10217828	Not Available	847	Open in IMG/M
3300015370\|Ga0180009_10253417	Not Available	758	Open in IMG/M
3300015370\|Ga0180009_10412393	Not Available	534	Open in IMG/M
3300020171\|Ga0180732_1006979	Not Available	4836	Open in IMG/M
3300020171\|Ga0180732_1009312	Not Available	4027	Open in IMG/M
3300020171\|Ga0180732_1024930	Not Available	2146	Open in IMG/M
3300020171\|Ga0180732_1036904	Not Available	1672	Open in IMG/M
3300020171\|Ga0180732_1051153	Not Available	1359	Open in IMG/M
3300020171\|Ga0180732_1053713	Not Available	1319	Open in IMG/M
3300020171\|Ga0180732_1060216	Not Available	1229	Open in IMG/M
3300020171\|Ga0180732_1077239	Not Available	1053	Open in IMG/M
3300020171\|Ga0180732_1090103	Not Available	957	Open in IMG/M
3300020171\|Ga0180732_1092017	Not Available	945	Open in IMG/M
3300020171\|Ga0180732_1117169	Not Available	817	Open in IMG/M
3300020171\|Ga0180732_1130343	Not Available	767	Open in IMG/M
3300020171\|Ga0180732_1142113	Not Available	728	Open in IMG/M
3300020171\|Ga0180732_1153738	Not Available	695	Open in IMG/M
3300020171\|Ga0180732_1180553	Not Available	632	Open in IMG/M
3300020171\|Ga0180732_1223167	Not Available	559	Open in IMG/M
3300022553\|Ga0212124_10073926	Not Available	1954	Open in IMG/M
3300023256\|Ga0222703_1051338	Not Available	762	Open in IMG/M
3300024262\|Ga0210003_1000383	Not Available	40124	Open in IMG/M
3300024353\|Ga0209979_1025368	Not Available	3318	Open in IMG/M
3300024353\|Ga0209979_1112109	Not Available	1092	Open in IMG/M
3300024432\|Ga0209977_10021919	Not Available	3056	Open in IMG/M
3300025736\|Ga0207997_1051196	Not Available	1507	Open in IMG/M
3300025736\|Ga0207997_1148449	Not Available	742	Open in IMG/M
3300025736\|Ga0207997_1238157	Not Available	534	Open in IMG/M
3300028299\|Ga0268276_1146345	Not Available	746	Open in IMG/M
3300028619\|Ga0257136_1014167	Not Available	1563	Open in IMG/M
3300028620\|Ga0257139_1017038	Not Available	1328	Open in IMG/M
3300031227\|Ga0307928_10347703	Not Available	714	Open in IMG/M
3300031278\|Ga0307431_1018391	Not Available	2480	Open in IMG/M
3300031280\|Ga0307428_1003056	Not Available	7329	Open in IMG/M
3300031280\|Ga0307428_1084455	Not Available	861	Open in IMG/M
3300031379\|Ga0307434_1140279	Not Available	667	Open in IMG/M
3300031539\|Ga0307380_10112132	Not Available	2786	Open in IMG/M
3300031539\|Ga0307380_10198635	Not Available	1939	Open in IMG/M
3300031551\|Ga0315548_1109858	Not Available	1055	Open in IMG/M
3300031551\|Ga0315548_1148166	Not Available	824	Open in IMG/M
3300031565\|Ga0307379_11081878	Not Available	675	Open in IMG/M
3300031565\|Ga0307379_11470171	Not Available	545	Open in IMG/M
3300031565\|Ga0307379_11656817	Not Available	501	Open in IMG/M
3300031578\|Ga0307376_10018053	Not Available	5614	Open in IMG/M
3300031586\|Ga0315541_1000757	Not Available	33253	Open in IMG/M
3300031586\|Ga0315541_1148725	Not Available	701	Open in IMG/M
3300031643\|Ga0315533_1013106	Not Available	3950	Open in IMG/M
3300031643\|Ga0315533_1039339	Not Available	1645	Open in IMG/M
3300031643\|Ga0315533_1047210	Not Available	1430	Open in IMG/M
3300031673\|Ga0307377_11078801	Not Available	534	Open in IMG/M
3300031949\|Ga0214473_10006344	Not Available	14147	Open in IMG/M
3300032062\|Ga0315551_10080082	Not Available	1570	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	93.28%
Terrestrial	Environmental → Terrestrial	6.72%

Habitat	Taxonomy	Distribution
Freshwater	Environmental → Aquatic → Freshwater	56.30%
Marine	Environmental → Aquatic → Marine	23.53%
Non-Marine Saline And Alkaline	Environmental → Aquatic → Non-Marine Saline And Alkaline	9.24%
Soil	Environmental → Terrestrial → Soil	6.72%
Sediment	Environmental → Aquatic → Sediment	4.20%

Habitat	Taxonomy	Distribution
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	51.26%
Intertidal Zone	Environmental → Aquatic → Marine → Intertidal Zone	10.08%
Oceanic	Environmental → Aquatic → Marine → Oceanic	9.24%
Saline	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline	9.24%
Clay	Environmental → Terrestrial → Soil → Clay	5.88%
Lake	Environmental → Aquatic → Freshwater → Lake	4.20%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	4.20%
Neritic Zone	Environmental → Aquatic → Marine → Neritic Zone	2.52%
Coastal	Environmental → Aquatic → Marine → Coastal	1.68%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	0.84%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	0.84%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Aquatic → Freshwater → Groundwater → Unclassified	51.26%
Salt Marsh	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh	10.08%
Unclassified	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified	9.24%
Sediment	Environmental → Aquatic → Marine → Oceanic → Sediment	7.56%
Unclassified	Environmental → Terrestrial → Soil → Clay → Unclassified	5.88%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	4.20%
Unclassified	Environmental → Aquatic → Freshwater → Lake → Unclassified	2.52%
Unclassified	Environmental → Aquatic → Marine → Neritic Zone → Unclassified	2.52%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment	1.68%
Unclassified	Environmental → Aquatic → Marine → Oceanic → Unclassified	1.68%
Sediment	Environmental → Aquatic → Marine → Coastal → Sediment	1.68%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	0.84%
Uranium Contaminated	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated	0.84%

Habitat	Taxonomy	Distribution
Groundwater	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Groundwater	51.26%
Deep Subsurface	Environmental → Aquatic → Marine → Oceanic → Sediment → Deep Subsurface	7.56%
Salt Marsh Sediment	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh Sediment	6.72%
Saline Lake	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Lake	6.72%
Soil	Environmental → Terrestrial → Soil → Clay → Unclassified → Soil	5.88%
Salt Marsh	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh	3.36%
Freshwater	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater	2.52%
Marine Sediment	Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine Sediment	2.52%
Saline Water	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water	2.52%
Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Sediment	2.52%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment	1.68%
Marine	Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine	1.68%
Marine Sediment	Environmental → Aquatic → Marine → Coastal → Sediment → Marine Sediment	1.68%
Marine Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Marine Sediment	1.68%
Freshwater Wetlands	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Freshwater Wetlands	0.84%
Soil	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated → Soil	0.84%

Visualization

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Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300003141	Marine sediment microbial communities from deep subseafloor of Shimokita Peninsula, Japan - 107 mbsf	Environmental	Open in IMG/M
3300003143	Marine sediment microbial communities from deep subseafloor - Sample from 48.5 mbsf	Environmental	Open in IMG/M
3300005918	Saline lake microbial communities from Ace Lake, Antarctica- Antarctic Ace Lake Metagenome 02UKC	Environmental	Open in IMG/M
3300005935	Saline lake microbial communities from Ace Lake, Antarctica - Antarctic Ace Lake Metagenome 02UKN	Environmental	Open in IMG/M
3300005939	Saline lake microbial communities from Ace Lake, Antarctica - Antarctic Ace Lake Metagenome 02UKX	Environmental	Open in IMG/M
3300008470	Sediment core microbial communities from Adelie Basin, Antarctica. Combined Assembly of Gp0136540, Gp0136562, Gp0136563	Environmental	Open in IMG/M
3300008516	Marine sediment microbial communities from Aarhus Bay station M5, Denmark - 125 cmbsf. Combined Assembly of MM3PM3	Environmental	Open in IMG/M
3300008517	Marine sediment microbial communities from Aarhus Bay station M5, Denmark - 175 cmbsf. Combined Assembly of Gp0128389 and Gp0131431 MM4PM4	Environmental	Open in IMG/M
3300009149	Deep subsurface microbial communities from Baltic Sea to uncover new lineages of life (NeLLi) - Landsort_02402 metaG	Environmental	Open in IMG/M
3300009488	Deep subsurface microbial communities from Indian Ocean to uncover new lineages of life (NeLLi) - Sumatra_00607 metaG	Environmental	Open in IMG/M
3300009499	Deep subsurface microbial communities from Anholt, Denmark to uncover new lineages of life (NeLLi) - Anholt_01485 metaG	Environmental	Open in IMG/M
3300010242	Marine sediment microbial community from turbidite sediment within the South China Sea	Environmental	Open in IMG/M
3300012931	Freshwater wetland microbial communities from Ohio, USA - Open water 3 Core 3 Depth 3 metaG	Environmental	Open in IMG/M
3300013089	Freshwater microbial communities from Powell Lake, British Columbia, Canada to study Microbial Dark Matter (Phase II) - PL_2010_330m	Environmental	Open in IMG/M
3300013127 (restricted)	Sediment microbial communities from Lake Kivu, Rwanda - Sediment site 48cm	Environmental	Open in IMG/M
3300013129 (restricted)	Sediment microbial communities from Lake Kivu, Rwanda - Sediment site 10cm	Environmental	Open in IMG/M
3300014613	Groundwater microbial communities from the Aspo Hard Rock Laboratory (HRL) deep subsurface site, Sweden - MM_PW_MetaG	Environmental	Open in IMG/M
3300014656	Groundwater microbial communities from the Aspo Hard Rock Laboratory (HRL) deep subsurface site, Sweden - MM_PC_MetaG	Environmental	Open in IMG/M
3300015370	Groundwater microbial communities from the Aspo Hard Rock Laboratory (HRL) deep subsurface site, Sweden - OS_PC_MetaG	Environmental	Open in IMG/M
3300020171	Groundwater microbial communities from the Olkiluoto Island deep subsurface site, Finland - KR11_0.1 MetaG	Environmental	Open in IMG/M
3300022553	Powell_combined assembly	Environmental	Open in IMG/M
3300023256	Saline water microbial communities from Ace Lake, Antarctica - #1506	Environmental	Open in IMG/M
3300024262	Deep subsurface microbial communities from Baltic Sea to uncover new lineages of life (NeLLi) - Landsort_02402 metaG (SPAdes)	Environmental	Open in IMG/M
3300024353	Deep subsurface microbial communities from Anholt, Denmark to uncover new lineages of life (NeLLi) - Anholt_01485 metaG (SPAdes)	Environmental	Open in IMG/M
3300024432	Deep subsurface microbial communities from Indian Ocean to uncover new lineages of life (NeLLi) - Sumatra_00607 metaG (SPAdes)	Environmental	Open in IMG/M
3300025736	Saline lake microbial communities from Ace Lake, Antarctica - Antarctic Ace Lake Metagenome 02UKN (SPAdes)	Environmental	Open in IMG/M
3300028299	Saline water microbial communities from Sakinaw Lake, British Columbia, Canada - sak_2010_1_5_45m	Environmental	Open in IMG/M
3300028619	Metatranscriptome of saline water microbial communities from Sakinaw Lake, British Columbia, Canada - sak_2010_1_5_45m (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300028620	Metatranscriptome of saline water microbial communities from Sakinaw Lake, British Columbia, Canada - sak_2010_1_5_80m (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031227	Saline water microbial communities from Ace Lake, Antarctica - #232	Environmental	Open in IMG/M
3300031278	Salt marsh sediment microbial communities from the Plum Island Ecosystem LTER, Massachusetts, United States - WE1603-170	Environmental	Open in IMG/M
3300031280	Salt marsh sediment microbial communities from the Plum Island Ecosystem LTER, Massachusetts, United States - WE1603-240	Environmental	Open in IMG/M
3300031379	Salt marsh sediment microbial communities from the Plum Island Ecosystem LTER, Massachusetts, United States - WE1603-220	Environmental	Open in IMG/M
3300031539	Soil microbial communities from Risofladan, Vaasa, Finland - UN-3	Environmental	Open in IMG/M
3300031551	Salt marsh sediment microbial communities from the Plum Island Ecosystem LTER, Massachusetts, United States - Salt Marsh Sediment SW1601-110	Environmental	Open in IMG/M
3300031565	Soil microbial communities from Risofladan, Vaasa, Finland - UN-2	Environmental	Open in IMG/M
3300031578	Soil microbial communities from Risofladan, Vaasa, Finland - TR-2	Environmental	Open in IMG/M
3300031586	Salt marsh sediment microbial communities from the Plum Island Ecosystem LTER, Massachusetts, United States - Salt Marsh Sediment SW1601-190	Environmental	Open in IMG/M
3300031643	Salt marsh sediment microbial communities from the Plum Island Ecosystem LTER, Massachusetts, United States - Salt Marsh Sediment SW1601-30	Environmental	Open in IMG/M
3300031673	Soil microbial communities from Risofladan, Vaasa, Finland - TR-3	Environmental	Open in IMG/M
3300031949	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT98D197	Environmental	Open in IMG/M
3300032062	Salt marsh sediment microbial communities from the Plum Island Ecosystem LTER, Massachusetts, United States - Salt Marsh Sediment SW1602-90	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID	Sample Taxon ID	Habitat	Sequence
Ga0052246_10234222	3300003141	Marine Sediment	MADEMAEKLAEAKKKMFGAQQPAGKVIILVKGDSLIQSKDPKVEVRQLE*
Ga0052246_10329603	3300003141	Marine Sediment	MADEMAEKLAEAKKKMFGAQQPAGKVIILVKGDSLIQSKDPKVEV*
Ga0052245_10380921	3300003143	Marine Sediment	MADKMAEKLAEAKKKMFGAQQPSGKVIILVKGDALIKSTDPKVEVRKQE*
Ga0075116_102857762	3300005918	Saline Lake	MADEMAEKLAEAKKKMFGAQQPSGKIIILVKGDALIKCADPKVEVRQQQ*
Ga0075125_100699233	3300005935	Saline Lake	MADELAEKLAEAKKKMFGAQQPSGKIIILVKGDALIKCADPKVEVRQQQ*
Ga0075125_102358012	3300005935	Saline Lake	MADELAKALADATKKMFGNLQPSGGKIVILSKGDAEVKSSDPRVEVRKVT*
Ga0075125_103710702	3300005935	Saline Lake	MADELAEKLAEAKKKMFGAQRPSGKIIILVKGDALIKCADPKVEVRQQE*
Ga0075123_102849651	3300005939	Saline Lake	MADELAEKLAEAKKKMFGAQQPSGKIIILVKGDAL
Ga0115371_100205992	3300008470	Sediment	MADEVAEKIAEAKAIMFKNLQPSGGKIVLLSKGDAEVKSSDPRVEVRKIT*
Ga0115371_100831571	3300008470	Sediment	MADELAEKLAEAKKKMFGTQRPSGKIIILVKGDALIKCADPKVEVRQQE*
Ga0115371_104324531	3300008470	Sediment	MADELAEKLAEAKKKMFGAQQPSRKIIILVKGEALIKSTDSKVEVRQLE*
Ga0111033_12335443	3300008516	Marine Sediment	MADELAEKLAEAKKKMFGAQQPSGKTIILVKGDALIKSADPKVEVRQQE*
Ga0111034_11692323	3300008517	Marine Sediment	MADELAEKLAEAKKKMFGVQQSSGKTIILVKGDALIKSADPKVEVRKQE*
Ga0114918_1000062822	3300009149	Deep Subsurface	MADDVAQKIEEAKKKMFGNLQPSGGKIVILSKGDAEVKSSDPRVEVRKVT*
Ga0114925_100334555	3300009488	Deep Subsurface	MADELAEKLAEAKKKMFGAQQPSGKVIILVKGDSLIQSKDPKVEVRQLE*
Ga0114925_106033672	3300009488	Deep Subsurface	MADELAERIAEAKKAMFGTQPPSGGKVLLLVKGQAKVTCSDPKVEVRPA*
Ga0114930_100093789	3300009499	Deep Subsurface	MADESAKKLAEAKKKMFGAQQPSGKIIILVKGDTLFKSTDPKVEVRQLE*
Ga0114930_100184315	3300009499	Deep Subsurface	MADELAEKLAEAKKKMFGAQQPSGKIIVLVKGDALIESKDPKVEVRQQE*
Ga0136484_10050452	3300010242	Marine Sediment	MADELAKKLAEAKKKMLGAQQPSGKIIILVKGDSLIKSADPKVEVRQLE*
Ga0136484_10058732	3300010242	Marine Sediment	MADKMAEKLAEAKKKMFGAQQPSGKIIILVKGDSLIQCKDPKVEVRQLE*
Ga0153915_107144282	3300012931	Freshwater Wetlands	MTDDLAKKLAEAKQKMFGPPKPSATKIVLIVKGHARVKTSNPNTMVKQ*
Ga0163203_10043557	3300013089	Freshwater	MSDELAKKLAEAKKKMFGNFQPYSGNVVLLVSGDARVESSDKKIEIRKVSS*
Ga0163203_10200782	3300013089	Freshwater	MVDELAKALADARKKMFGNLQPSGGKIVILSKGDAEVKSSDPRVEVRKVT*
(restricted) Ga0172365_101036413	3300013127	Sediment	MADELAKKIAEAKAKMFQGQHPYGGKIILLSKGDAQVKSSDPKIEVRVVT*
(restricted) Ga0172364_104944353	3300013129	Sediment	MADELAQKLAEAKKKMFGEQKPHGGKVIVTVKGEAKVESPDKNVEIKKIGMSDKG*
Ga0180008_10263404	3300014613	Groundwater	MADELAKKLAEAKKKMLGAQQPSGRIIILVKGDALIKSTDSKVEVRKQE*
Ga0180008_10381883	3300014613	Groundwater	MADELAKKLAEARKKMFGTLQPSGGKTIVLVRGDARVESSDPNVQVRKG*
Ga0180008_10652482	3300014613	Groundwater	MADELAEKLAEAKKKMFGNLQPYGGKSVILVAGDARVESSDKKIEIRKVSL*
Ga0180008_10720683	3300014613	Groundwater	MAEEVAKKIAEAKAKMFGNQQPYGGKIILLSRGDAEVRSSDPKVEVRKVT*
Ga0180008_10740023	3300014613	Groundwater	MADELAKKIAEAKEKMLGAQQPSSKIIILVKGDSLIKSADPKVEVRQLE*
Ga0180008_10824273	3300014613	Groundwater	MADEVAQKIEEAKKKMFGNLQPSGGKIVILSKGDAEVKSSDPRVEVRKVT*
Ga0180008_12525072	3300014613	Groundwater	MADELAKALADATKKMFGNLQPSGGKTVVLVKGDANFRSPDKNVEIRKVS*
Ga0180008_12989791	3300014613	Groundwater	MSDELAKKIAEAKEKMLGSQQSSGKIIILVKGDSLIKSADPKVEVRQLE*
Ga0180008_13166392	3300014613	Groundwater	VVDELAKKIAEAKAKMFGNLQPSGGKSILIVSGDVKVESPDKKVVVRKSTR*
Ga0180007_100656685	3300014656	Groundwater	MADELAKKLAEAKEKMFGNLQPAGGKTLILVKGNARVESKDPKVEVRKA*
Ga0180007_101212893	3300014656	Groundwater	MADELAKKIAEAKEKMLGSLQPYGGKTLIIVKGEARVESKDPKVEVRKA*
Ga0180007_101276865	3300014656	Groundwater	MSDELAKKLAEAKKKMFGNHPSSGGKVVVLVKGDVNFRSPDKNVEIRKVS*
Ga0180007_101431272	3300014656	Groundwater	MADELAKKLAEAKKKMFGAQQPSGKTIILVKGDALIKSADPKVEVRQQE*
Ga0180007_101529873	3300014656	Groundwater	MADELAKKLAEAKQKMFGDRQPYGGKIILFVKGDAEVKSDDPKVEVRRIA*
Ga0180007_101720632	3300014656	Groundwater	MADEVATKIAEAKEKMFKNLQPSGGKIVVLFKGDVRIKASDANVEVRKMQ*
Ga0180007_101874963	3300014656	Groundwater	MADELAKKLAEAREKMFGKQQPSGGKTLVLFKGEARFTSPDKNVEIRKVS*
Ga0180007_101883563	3300014656	Groundwater	MADEVSQKIEEAKKKMFGNLQPSGGKIVILSKGDAEVKSSDPRVEVRKVT*
Ga0180007_101954213	3300014656	Groundwater	MADELAQKLAEAKKKMFGDLQPYGGKTVLIVTGDAEVKSDDKKVEVRKE*
Ga0180007_102784562	3300014656	Groundwater	MADELAEKLAEARAKMFGTLQPSGGNVVLLVSGDARVESSDKKIEIRKVSS*
Ga0180007_103551103	3300014656	Groundwater	MSDELAEKIAEAKAKMLGAQQSSGKIIILVKGDSLIKSADPKVEVR
Ga0180007_103612012	3300014656	Groundwater	MADELAKKIAEAKEKMLGTQQPSGKIIVLVKGDSLIKSADPKVEVRQLE*
Ga0180007_103681282	3300014656	Groundwater	MSDELAKKLAEAKKKMFGNFQPHSGKTVLLVSGDVKVESSDKKIDIRKVA*
Ga0180007_103763303	3300014656	Groundwater	LAKKLAEAKKKMFGNFQPYSGNVVLLVSGDARVESTDKKIEIRKVSL*
Ga0180007_103823922	3300014656	Groundwater	MANELEEKLAEAKKKMFGNLQPSGGKTVVLVEGDARITCSNPKFVVRKVNA*
Ga0180007_103845822	3300014656	Groundwater	MANELANKLAEAKEKMFGDIQPFGGNVVLLVSGDARVESPDKKVEVRKAE*
Ga0180007_103969732	3300014656	Groundwater	MSDELAKKIAEAKEKMFGAQQPSGKIIILVKGDSLIKSADPRVEVRQLE*
Ga0180007_104127743	3300014656	Groundwater	MDDELAKKIAEAKKKMFGDLQPSSGKIVLLVKGDARVESSDPK
Ga0180007_104301592	3300014656	Groundwater	MADELAKKLAEAKEKMFGGRQPSGGKIVLLVKGDARVETSDKRIEVRKGE*
Ga0180007_104893382	3300014656	Groundwater	MADELAKKLAEARKKMFGNQQPSGGKTIVLVRGEADFTSPNKNVEIRKV*
Ga0180007_105743632	3300014656	Groundwater	MADELAKKLAEAKKKMFGNLQPYGGKSVILVAGDAKVESSDKKIEIRNVT
Ga0180007_106638832	3300014656	Groundwater	MADELAKALAEAKKKMFGNLQPSGGKTVVLVKGDANFRSPDKNVEIRKVS*
Ga0180007_108348602	3300014656	Groundwater	MADELAKALAEAKKKMLGDLKPYGGKTMILVKGDGRVESSDPKVEVRKA*
Ga0180007_108456811	3300014656	Groundwater	MADELAKKLAEAKAKMFGSQPPSGSKIVLLVKGEVRVESSDPRVEVRKIET*
Ga0180007_108862071	3300014656	Groundwater	MADEVAEKLAEAKKKMFGNLQPDGGKTVLLFKGDATVRSKDPKVEV
Ga0180007_109063921	3300014656	Groundwater	MADELEKKLAEAREKMFGNLQPAGGKTLILVKGDA
Ga0180009_101045973	3300015370	Groundwater	MADNELAKKIAEAKKKMFGDLQPYGGTTILLVKGNARVESSDPKIEVRKAE*
Ga0180009_101161543	3300015370	Groundwater	MADELAKALAEDKKKMFGNLQPSGGKIVILSKGDAEVKSSDPRVEVRKVT*
Ga0180009_101219082	3300015370	Groundwater	MSDELAKKLAEAKKKMFGNFQPHSGKTVLLVSGDVKVESADKKIDIRKVA*
Ga0180009_101432211	3300015370	Groundwater	MADELAKKIAEAKKKMFGDLQPSVKIVLLVKGDAEVKSSDPKVEVRKI*
Ga0180009_101508772	3300015370	Groundwater	MADTELAQKIAEAQKKMLGDLEASGGKIILLVKGEAQVKSSDPKVDIRKTA*
Ga0180009_101796522	3300015370	Groundwater	MDDELAKKIAEAKKKMFGDLQPSGGKIVLLVKGDARVESSDPKVEVRKVG*
Ga0180009_102178282	3300015370	Groundwater	MADELAKALAEAKKKMFGNLQPSGGKVLLLATGDARIESTDPKIQVRKG*
Ga0180009_102534172	3300015370	Groundwater	MSDELAEKIAEAKAKMLGAQQSSGKIIILVKGDSLIKSADPKVEVRQLE*
Ga0180009_104123932	3300015370	Groundwater	MADELAEKIAEAKEKMLGTQQPSGKIIVLVKGDSLIKSADPKVEVRQLE*
Ga0180732_10069795	3300020171	Groundwater	MADEVATKIAEAKEKMFKNLQPSGGKIVVLFKGDVRIKASDANVEVRKMQ
Ga0180732_10093126	3300020171	Groundwater	MADELAEKLAEAKKKMFGNLQPYGGKSVILVAGDARVESSDKKIEIRKVSL
Ga0180732_10231554	3300020171	Groundwater	MADELATKIAEAKTKMFGSQQPSGSKIVLLFKGEARVQSSDPRVQVRKIE
Ga0180732_10249305	3300020171	Groundwater	MADELANKLAEAKKKMFGNQQPSGGKVVLLVKGDAKVESSDKRVQVRKV
Ga0180732_10369042	3300020171	Groundwater	MDDELAKKIAEAKKKMFGDLQPSGGKIVLLVKGDARVESSDPKVEVRKVG
Ga0180732_10511533	3300020171	Groundwater	MADELAKALAEAKKKMFGNLQPSGGKIVLLSKGDAEVKSSDPRVEVRKVT
Ga0180732_10537132	3300020171	Groundwater	MADELAKKIAEAKEKMLGTQQPSGKIIVLVKGDSLIKSADPKVEVRQLE
Ga0180732_10602163	3300020171	Groundwater	MADELAKKLAEARKKMFGTLQPSGGKTIVLVRGDARVESSDPNVQVRKG
Ga0180732_10772393	3300020171	Groundwater	MADELAQKLAEAKEKMFGDLQPYGGKSVILVAGDARVESSDKKIEIRKASS
Ga0180732_10901031	3300020171	Groundwater	MANELEEKLAEAKKKMFGNLQPSGGKTVVLVEGDARITCSNPKFVVRKVNA
Ga0180732_10920171	3300020171	Groundwater	MADELAEKLAEAKKKMFGDLQPYGGKNVILVAGDARVESSDKKIEIRKVSL
Ga0180732_11171692	3300020171	Groundwater	MSDELAKKIAEAKAKMFGNQQPSGGKIIVLVKGEGRVESRDKNVEVRKVT
Ga0180732_11303432	3300020171	Groundwater	MADELAKKLAEAKEKMFGDLQPFGGNIVLLVSGEAKVESSDKKVEVRKVE
Ga0180732_11421132	3300020171	Groundwater	MSDELAKKLAEAKKKMFGNFQPYSGNVVLLVSGDARVESSDKKIEIRKVSS
Ga0180732_11537382	3300020171	Groundwater	SRRRIMADEVATKIAEAKEKMFKNLQPSGGKIVMLSSGDAEVKSSDPRVEVKKVT
Ga0180732_11805532	3300020171	Groundwater	MADEVAQKIDEAKKKMFGNLQPSGGKIVLLSKGDAEVKSSDPRVEVRKVT
Ga0180732_12231671	3300020171	Groundwater	LAKKLAEAKKKMFGNFQPHSGKTVLLVSGDVKVESADKKIDIRKVA
Ga0212124_100739263	3300022553	Freshwater	MVDELAKALADARKKMFGNLQPSGGKIVILSKGDAEVKSSDPRVEVRKVT
Ga0222703_10513382	3300023256	Saline Water	ADELAEKLAEAKKKMFGAQQPSGKIIILVKGDALIKCADPKVEVRQQQ
Ga0210003_100038370	3300024262	Deep Subsurface	MADDVAQKIEEAKKKMFGNLQPSGGKIVILSKGDAEVKSSDPRVEVRKVT
Ga0209979_10253683	3300024353	Deep Subsurface	MADESAKKLAEAKKKMFGAQQPSGKIIILVKGDTLFKSTDPKVEVRQLE
Ga0209979_11121092	3300024353	Deep Subsurface	MADELAEKLAEAKKKMFGAQQPSGKIIVLVKGDALIESKDPKVEVRQQE
Ga0209977_100219192	3300024432	Deep Subsurface	MADELAEKLAEAKKKMFGAQQPSGKVIILVKGDSLIQSKDPKVEVRQLE
Ga0207997_10511963	3300025736	Saline Lake	MADELAEKLAEAKKKMFGAQQPSGKIIILVKGDALIKCADPKVEVRQQQ
Ga0207997_11484492	3300025736	Saline Lake	MADELAKALADATKKMFGNLQPSGGKIVILSKGDAEVKSSDPRVEVRKVT
Ga0207997_12381571	3300025736	Saline Lake	DELAEKLAEAKKKMFGAQRPSGKIIILVKGDALIKCADPKVEVRQQE
Ga0268276_11463453	3300028299	Saline Water	MADELAKKLAEAREKMFGKQQPSGGKTLVLFKGEASFTSPDKNVEIRKV
Ga0257136_10141673	3300028619	Marine	MADELAKKLAEAKKKMFGAQQPSGKIIILVKGDSLIKSADPKVEVRQQE
Ga0257139_10170383	3300028620	Marine	MADKMAEKLAEAKKKMFGAQQPSGKIIILVKGDSLIKSADPKVEVRQQE
Ga0307928_103477031	3300031227	Saline Water	MADELAEKLAEAKKKMFGAQQPSGKIIILVKGDALIKCADPKVEVRQQE
Ga0307431_10183912	3300031278	Salt Marsh	MSDELAKKLAEAKKKMFGDRQPSYGKTIVLVKGDANFKSPDKNVEIRKVG
Ga0307428_10030565	3300031280	Salt Marsh	MADELAKALADAKKKMFGNLQPSGGKTVVLVKGDANFRSPDKNVEIRKVS
Ga0307428_10844552	3300031280	Salt Marsh	MADELAEKLAEAKKKMLGAQQPSGKIIILVKGDSLIKSADPKVEVRQME
Ga0307434_11402792	3300031379	Salt Marsh	MADELAKKLAEAKKKMLGAQQPSGKIIILVKGDSLIKSADPKVEVRQME
Ga0307380_101121322	3300031539	Soil	MADELAKKLAEAKKKMFGAQQPSGKIIVLVKGDALIKSADPNVEVRQQE
Ga0307380_101986353	3300031539	Soil	MADELAEKLAEAKKKMFGAQQSSGKTIILVKGDARIESKDPKVEVRKQE
Ga0315548_11098583	3300031551	Salt Marsh Sediment	LAEAREKMFGDRQPSYGKTIVLVKGDANFKSPDKNVEIRKVG
Ga0315548_11481663	3300031551	Salt Marsh Sediment	MADELAKALADAKKKMFGNLQPSGGKTVVLVKGDANFRSPD
Ga0307379_110818781	3300031565	Soil	MADELAKKLAEAKKKMFGAQQPSGKTIILVKGDALIKSADPKVEVRQQE
Ga0307379_114701711	3300031565	Soil	RRCPMADELAKKLAEAREKMFGKQQPSGGKTLVLFKGEARFTSPDKNVEIRKVS
Ga0307379_116568172	3300031565	Soil	MADELAKKLAEARKEMFGKQQPSSRKTLVLFKGEASFTSPDKNVEIRKIS
Ga0307376_100180538	3300031578	Soil	MADEMAKKLAEAKKKMLGAQQPSGKIIILVKGDAVIKSSDPKVEVRQQP
Ga0315541_100075749	3300031586	Salt Marsh Sediment	MADEMAEKLAEAKKKMFGAQQPSGKIIMLVKGDTLFKCADPKVEVRQQE
Ga0315541_11487251	3300031586	Salt Marsh Sediment	AEAKKKMFGDRQPSYGKTIVLVKGDANFKSPDKNVEIRKVG
Ga0315533_10131065	3300031643	Salt Marsh Sediment	MSDELAKKLAEAREKMFGDRQPSYGKTIVLVKGDANFKSPDKNVEIRKVG
Ga0315533_10393393	3300031643	Salt Marsh Sediment	MSDELVKKLAEAKKKMFGNFQPSSGKTVLLVSGDVKVESSDKKIDIRKVT
Ga0315533_10472102	3300031643	Salt Marsh Sediment	MANELAKALAEAKKKMIGNLQPSGGKVIVFVKGEIHLESLSKNVEVREA
Ga0307377_110788012	3300031673	Soil	MGDELAKALAEAKKKMFGNLQPSGGKIVILSKGDAEVKSSDPRV
Ga0214473_1000634413	3300031949	Soil	MADDELARKIAEAKKKMFGNLQPSGGNITMFVKGDCKVESGDKKIQIRNMK
Ga0315551_100800822	3300032062	Salt Marsh Sediment	MSDELAKKLAEAKKKMFGNFQPYSGNVVLLVSGDARVESTDKKIEIRKVSL

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.35
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.35
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NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F074370

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Hidden Markov Model


Click on a Sequence Logo column to get its information.
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