Metagenome / Metatranscriptome Family F074164

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F074164
Family Type	Metagenome / Metatranscriptome
Number of Sequences	120
Average Sequence Length	55 residues
Representative Sequence	MTTDAGSGFDNQAAGRDAGDERLEEETRHLGDDAGEDAVEELERKQSRDSVNDAF
Number of Associated Samples	92
Number of Associated Scaffolds	120

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	79.66 %
% of genes near scaffold ends (potentially truncated)	34.17 %
% of genes from short scaffolds (< 2000 bps)	78.33 %
Associated GOLD sequencing projects	87
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.26

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (81.667 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (33.333 % of family members)
Environment Ontology (ENVO)	Unclassified (36.667 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (32.500 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 49.40% β-sheet: 0.00% Coil/Unstructured: 50.60%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.26
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.26
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 120 Family Scaffolds
PF01546	Peptidase_M20	29.17
PF07883	Cupin_2	27.50
PF13560	HTH_31	20.00
PF04107	GCS2	4.17
PF00892	EamA	4.17
PF11272	DUF3072	2.50
PF03992	ABM	2.50
PF05899	Cupin_3	0.83
PF10978	DUF2785	0.83
PF01596	Methyltransf_3	0.83

COG ID	Name	Functional Category	% Frequency in 120 Family Scaffolds
COG2518	Protein-L-isoaspartate O-methyltransferase	Posttranslational modification, protein turnover, chaperones [O]	0.83
COG4122	tRNA 5-hydroxyU34 O-methylase TrmR/YrrM	Translation, ribosomal structure and biogenesis [J]	0.83
COG4123	tRNA1(Val) A37 N6-methylase TrmN6	Translation, ribosomal structure and biogenesis [J]	0.83

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	81.67 %
Unclassified	root	N/A	18.33 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	81.67 %
Unclassified	root	N/A	18.33 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	81.67 %
Unclassified	root	N/A	18.33 %

Name	Rank	Taxonomy	Distribution
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	75.83 %
Unclassified	root	N/A	18.33 %

Name	Rank	Taxonomy	Distribution
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	74.17 %
Unclassified	root	N/A	18.33 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.83 %

Name	Rank	Taxonomy	Distribution
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	18.33 %
Unclassified	root	N/A	18.33 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	18.33 %
Micromonosporales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales	0.83 %
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	0.83 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.83 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	18.33 %
Micromonosporaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae	0.83 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	0.83 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.83 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	18.33 %
Catenuloplanes	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Catenuloplanes	0.83 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	0.83 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.83 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	18.33 %
Catenuloplanes japonicus	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Catenuloplanes → Catenuloplanes japonicus	0.83 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	0.83 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.83 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.83 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001431\|F14TB_100156663	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	566	Open in IMG/M
3300003373\|JGI25407J50210_10110713	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	677	Open in IMG/M
3300003373\|JGI25407J50210_10191175	Not Available	505	Open in IMG/M
3300005347\|Ga0070668_100035672	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	3794	Open in IMG/M
3300005536\|Ga0070697_100768041	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	852	Open in IMG/M
3300005562\|Ga0058697_10194218	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	915	Open in IMG/M
3300005719\|Ga0068861_100493363	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1106	Open in IMG/M
3300005981\|Ga0081538_10009500	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	8108	Open in IMG/M
3300005981\|Ga0081538_10011091	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	7327	Open in IMG/M
3300005981\|Ga0081538_10082393	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1706	Open in IMG/M
3300006572\|Ga0074051_11392325	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	868	Open in IMG/M
3300006844\|Ga0075428_100140517	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2626	Open in IMG/M
3300006845\|Ga0075421_100256552	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2142	Open in IMG/M
3300009100\|Ga0075418_10714458	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1081	Open in IMG/M
3300009147\|Ga0114129_10661320	Not Available	1347	Open in IMG/M
3300009156\|Ga0111538_12666610	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	626	Open in IMG/M
3300009553\|Ga0105249_10075837	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	3115	Open in IMG/M
3300009789\|Ga0126307_10153083	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1846	Open in IMG/M
3300009840\|Ga0126313_10011543	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	5603	Open in IMG/M
3300010038\|Ga0126315_10052305	All Organisms → cellular organisms → Bacteria	2221	Open in IMG/M
3300010039\|Ga0126309_10235637	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1030	Open in IMG/M
3300010042\|Ga0126314_10125433	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1770	Open in IMG/M
3300010042\|Ga0126314_10434651	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	948	Open in IMG/M
3300010044\|Ga0126310_10034980	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2669	Open in IMG/M
3300010145\|Ga0126321_1225342	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	661	Open in IMG/M
3300010145\|Ga0126321_1273829	Not Available	649	Open in IMG/M
3300010166\|Ga0126306_10012497	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	5425	Open in IMG/M
3300010166\|Ga0126306_11805985	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	512	Open in IMG/M
3300010399\|Ga0134127_10504444	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1222	Open in IMG/M
3300010999\|Ga0138505_100007146	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1209	Open in IMG/M
3300010999\|Ga0138505_100075636	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	501	Open in IMG/M
3300012938\|Ga0162651_100002368	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1795	Open in IMG/M
3300012938\|Ga0162651_100018071	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	943	Open in IMG/M
3300013307\|Ga0157372_10793999	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1100	Open in IMG/M
3300014487\|Ga0182000_10104030	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	958	Open in IMG/M
3300014488\|Ga0182001_10008466	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2168	Open in IMG/M
3300017997\|Ga0184610_1009040	All Organisms → cellular organisms → Bacteria → Terrabacteria group	2455	Open in IMG/M
3300018000\|Ga0184604_10080917	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	970	Open in IMG/M
3300018000\|Ga0184604_10175385	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	721	Open in IMG/M
3300018027\|Ga0184605_10031081	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2201	Open in IMG/M
3300018053\|Ga0184626_10239656	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	763	Open in IMG/M
3300018054\|Ga0184621_10006349	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3264	Open in IMG/M
3300018054\|Ga0184621_10079939	Not Available	1135	Open in IMG/M
3300018066\|Ga0184617_1012691	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1724	Open in IMG/M
3300018066\|Ga0184617_1034689	All Organisms → cellular organisms → Bacteria	1215	Open in IMG/M
3300018066\|Ga0184617_1207870	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	583	Open in IMG/M
3300018071\|Ga0184618_10239123	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	767	Open in IMG/M
3300018072\|Ga0184635_10419642	Not Available	504	Open in IMG/M
3300018073\|Ga0184624_10090629	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1298	Open in IMG/M
3300018074\|Ga0184640_10073655	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1450	Open in IMG/M
3300018422\|Ga0190265_10116259	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2544	Open in IMG/M
3300018432\|Ga0190275_10963649	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	923	Open in IMG/M
3300018465\|Ga0190269_10377753	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	866	Open in IMG/M
3300018465\|Ga0190269_10928311	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	647	Open in IMG/M
3300018466\|Ga0190268_10220286	All Organisms → cellular organisms → Bacteria	1058	Open in IMG/M
3300018466\|Ga0190268_11284220	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	616	Open in IMG/M
3300019254\|Ga0184641_1452176	Not Available	537	Open in IMG/M
3300019269\|Ga0184644_1008141	Not Available	570	Open in IMG/M
3300019356\|Ga0173481_10281815	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	764	Open in IMG/M
3300019377\|Ga0190264_10419019	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	877	Open in IMG/M
3300019767\|Ga0190267_10121318	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1084	Open in IMG/M
3300019867\|Ga0193704_1026867	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1166	Open in IMG/M
3300021078\|Ga0210381_10180967	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	728	Open in IMG/M
3300021951\|Ga0222624_1189172	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1005	Open in IMG/M
3300022195\|Ga0222625_1489864	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	676	Open in IMG/M
3300022195\|Ga0222625_1555897	Not Available	506	Open in IMG/M
3300022195\|Ga0222625_1798048	Not Available	1070	Open in IMG/M
3300025961\|Ga0207712_10206101	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1563	Open in IMG/M
3300025972\|Ga0207668_10500567	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1045	Open in IMG/M
3300026118\|Ga0207675_100001301	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	25034	Open in IMG/M
3300027718\|Ga0209795_10133341	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Catenuloplanes → Catenuloplanes japonicus	703	Open in IMG/M
3300027809\|Ga0209574_10043954	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1116	Open in IMG/M
3300027809\|Ga0209574_10269903	Not Available	570	Open in IMG/M
3300028380\|Ga0268265_11256333	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	740	Open in IMG/M
3300028589\|Ga0247818_10286496	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1093	Open in IMG/M
3300028589\|Ga0247818_10670342	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	717	Open in IMG/M
3300028608\|Ga0247819_10192644	Not Available	1092	Open in IMG/M
3300028608\|Ga0247819_10214131	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1042	Open in IMG/M
3300028704\|Ga0307321_1044378	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	834	Open in IMG/M
3300028704\|Ga0307321_1122230	Not Available	540	Open in IMG/M
3300028708\|Ga0307295_10009435	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2290	Open in IMG/M
3300028710\|Ga0307322_10023011	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1444	Open in IMG/M
3300028712\|Ga0307285_10025234	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1392	Open in IMG/M
3300028715\|Ga0307313_10217335	Not Available	594	Open in IMG/M
3300028722\|Ga0307319_10032438	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1620	Open in IMG/M
3300028722\|Ga0307319_10223836	Not Available	617	Open in IMG/M
3300028744\|Ga0307318_10006511	All Organisms → cellular organisms → Bacteria	3766	Open in IMG/M
3300028744\|Ga0307318_10288428	Not Available	574	Open in IMG/M
3300028754\|Ga0307297_10014884	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2119	Open in IMG/M
3300028771\|Ga0307320_10058785	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1426	Open in IMG/M
3300028796\|Ga0307287_10026907	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2034	Open in IMG/M
3300028812\|Ga0247825_10075363	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2262	Open in IMG/M
3300028819\|Ga0307296_10312554	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	857	Open in IMG/M
3300028824\|Ga0307310_10267001	All Organisms → cellular organisms → Bacteria	825	Open in IMG/M
3300028876\|Ga0307286_10001531	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	6710	Open in IMG/M
3300028884\|Ga0307308_10085159	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1500	Open in IMG/M
3300028884\|Ga0307308_10374181	Not Available	682	Open in IMG/M
3300030903\|Ga0308206_1122906	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	602	Open in IMG/M
3300030903\|Ga0308206_1138410	Not Available	577	Open in IMG/M
3300030905\|Ga0308200_1184767	All Organisms → cellular organisms → Bacteria	500	Open in IMG/M
3300031091\|Ga0308201_10026605	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1272	Open in IMG/M
3300031092\|Ga0308204_10065498	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	923	Open in IMG/M
3300031092\|Ga0308204_10209704	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	612	Open in IMG/M
3300031092\|Ga0308204_10242089	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	581	Open in IMG/M
3300031092\|Ga0308204_10288774	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	545	Open in IMG/M
3300031093\|Ga0308197_10134449	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	776	Open in IMG/M
3300031114\|Ga0308187_10152953	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	771	Open in IMG/M
3300031548\|Ga0307408_101181765	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	713	Open in IMG/M
3300031731\|Ga0307405_10945074	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	732	Open in IMG/M
3300031740\|Ga0307468_100050906	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2162	Open in IMG/M
3300031901\|Ga0307406_12062505	Not Available	510	Open in IMG/M
3300031995\|Ga0307409_102607091	Not Available	534	Open in IMG/M
3300032004\|Ga0307414_10136315	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1914	Open in IMG/M
3300032080\|Ga0326721_10090998	All Organisms → cellular organisms → Bacteria	1436	Open in IMG/M
3300032159\|Ga0268251_10102986	Not Available	1020	Open in IMG/M
3300034172\|Ga0334913_021476	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1436	Open in IMG/M
3300034174\|Ga0334932_001195	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	4069	Open in IMG/M
3300034402\|Ga0334960_029916	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	735	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	76.67%
Host-Associated	Host-Associated	23.33%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	57.50%
Plants	Host-Associated → Plants	23.33%
Aquatic	Environmental → Aquatic	19.17%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	54.17%
Rhizosphere	Host-Associated → Plants → Rhizosphere	12.50%
Sediment	Environmental → Aquatic → Sediment	11.67%
Freshwater	Environmental → Aquatic → Freshwater	7.50%
Roots	Host-Associated → Plants → Roots	4.17%
Phylloplane	Host-Associated → Plants → Phylloplane	4.17%
Agricultural Field	Environmental → Terrestrial → Agricultural Field	3.33%
Rhizoplane	Host-Associated → Plants → Rhizoplane	2.50%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	52.50%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	11.67%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	10.83%
Sediment	Environmental → Aquatic → Freshwater → Sediment	5.83%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	4.17%
Unclassified	Host-Associated → Plants → Phylloplane → Unclassified	4.17%
Unclassified	Environmental → Terrestrial → Agricultural Field → Unclassified	3.33%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	2.50%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	1.67%
Loam	Environmental → Terrestrial → Soil → Loam	1.67%
Soil	Host-Associated → Plants → Rhizosphere → Soil	1.67%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	44.17%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	11.67%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	10.83%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	5.83%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	4.17%
Unclassified	Host-Associated → Plants → Roots → Rhizosphere → Unclassified	4.17%
Unclassified	Host-Associated → Plants → Phylloplane → Unclassified → Unclassified	4.17%
Desert	Environmental → Terrestrial → Soil → Unclassified → Desert	3.33%
Unclassified	Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified	3.33%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	2.50%
Unclassified	Environmental → Aquatic → Freshwater → Groundwater → Unclassified	1.67%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	1.67%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	0.83%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.83%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	0.83%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	33.33%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	11.67%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	7.50%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	5.83%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	4.17%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Unclassified → Tabebuia Heterophylla Rhizosphere	4.17%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	4.17%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	4.17%
Agave	Host-Associated → Plants → Phylloplane → Unclassified → Unclassified → Agave	4.17%
Sub-Biocrust Soil	Environmental → Terrestrial → Soil → Unclassified → Desert → Sub-Biocrust Soil	3.33%
Soil	Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified → Soil	3.33%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	2.50%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	2.50%
Soil	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil	1.67%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	1.67%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	1.67%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.83%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.83%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.83%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	0.83%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.83%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001431	Amended soil microbial communities from Kansas Great Prairies, USA - BrdU F1.4TB clc assemly	Environmental	Open in IMG/M
3300003373	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1	Host-Associated	Open in IMG/M
3300005347	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG	Host-Associated	Open in IMG/M
3300005536	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG	Environmental	Open in IMG/M
3300005562	Agave microbial communities from Guanajuato, Mexico - As.Ma.e	Host-Associated	Open in IMG/M
3300005719	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2	Host-Associated	Open in IMG/M
3300005981	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1	Host-Associated	Open in IMG/M
3300006572	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHPB (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006844	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2	Host-Associated	Open in IMG/M
3300006845	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5	Host-Associated	Open in IMG/M
3300009100	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2	Host-Associated	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300009553	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG	Host-Associated	Open in IMG/M
3300009789	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot28	Environmental	Open in IMG/M
3300009840	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105A	Environmental	Open in IMG/M
3300010038	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot106	Environmental	Open in IMG/M
3300010039	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot56	Environmental	Open in IMG/M
3300010042	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105B	Environmental	Open in IMG/M
3300010044	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot60	Environmental	Open in IMG/M
3300010145	Soil microbial communities from Hawaii, USA to study soil gas exchange rates - KP-HI-INT metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010166	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot27	Environmental	Open in IMG/M
3300010399	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3	Environmental	Open in IMG/M
3300010999	Agricultural soil microbial communities from Tamara ranch near Red Deer, Alberta, Canada - d1t3i015	Environmental	Open in IMG/M
3300012938	Agricultural soil microbial communities from Tamara ranch near Red Deer, Alberta, Canada - d1t2i015	Environmental	Open in IMG/M
3300013307	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG	Host-Associated	Open in IMG/M
3300014487	Bulk soil microbial communities from Mexico - Magueyal (Ma) metaG	Environmental	Open in IMG/M
3300014488	Bulk soil microbial communities from Mexico - San Felipe (SF) metaG	Environmental	Open in IMG/M
3300017997	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_100_coex	Environmental	Open in IMG/M
3300018000	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_5_coex	Environmental	Open in IMG/M
3300018027	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_30_coex	Environmental	Open in IMG/M
3300018053	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_60_b1	Environmental	Open in IMG/M
3300018054	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_30_b1	Environmental	Open in IMG/M
3300018066	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_5_b1	Environmental	Open in IMG/M
3300018071	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_30_b1	Environmental	Open in IMG/M
3300018072	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_30_b2	Environmental	Open in IMG/M
3300018073	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_5_b1	Environmental	Open in IMG/M
3300018074	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_200_b2	Environmental	Open in IMG/M
3300018422	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 124 T	Environmental	Open in IMG/M
3300018432	Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 550 T	Environmental	Open in IMG/M
3300018465	Populus adjacent soil microbial communities from riparian zone of Blue River, Arizona, USA - 249 IS	Environmental	Open in IMG/M
3300018466	Populus adjacent soil microbial communities from riparian zone of Blue River, Arizona, USA - 249 T	Environmental	Open in IMG/M
3300019254	Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_5 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019269	Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_5 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019356	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S073-202C-2 (version 2)	Environmental	Open in IMG/M
3300019377	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 112 T	Environmental	Open in IMG/M
3300019767	Populus adjacent soil microbial communities from riparian zone of Oak Creek, Arizona, USA - 239 T	Environmental	Open in IMG/M
3300019867	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U3m1	Environmental	Open in IMG/M
3300021078	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_5_coex redo	Environmental	Open in IMG/M
3300021951	Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_30 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300022195	Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300025961	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025972	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026118	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300027718	Agave microbial communities from Guanajuato, Mexico - Or.Ma.rz (SPAdes)	Host-Associated	Open in IMG/M
3300027809	Agave microbial communities from Guanajuato, Mexico - Mg.Ma.rz (SPAdes)	Host-Associated	Open in IMG/M
3300028380	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300028589	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Glucose_Day1	Environmental	Open in IMG/M
3300028608	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Xylose_Day6	Environmental	Open in IMG/M
3300028704	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_379	Environmental	Open in IMG/M
3300028708	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_152	Environmental	Open in IMG/M
3300028710	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_380	Environmental	Open in IMG/M
3300028712	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_139	Environmental	Open in IMG/M
3300028715	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_203	Environmental	Open in IMG/M
3300028717	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_158	Environmental	Open in IMG/M
3300028722	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_368	Environmental	Open in IMG/M
3300028744	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_367	Environmental	Open in IMG/M
3300028754	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_157	Environmental	Open in IMG/M
3300028771	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_369	Environmental	Open in IMG/M
3300028796	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_141	Environmental	Open in IMG/M
3300028812	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Vanillin_Day48	Environmental	Open in IMG/M
3300028819	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_153	Environmental	Open in IMG/M
3300028824	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_197	Environmental	Open in IMG/M
3300028876	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_140	Environmental	Open in IMG/M
3300028884	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_195	Environmental	Open in IMG/M
3300030903	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_369 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030905	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_204 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031091	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_355 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031092	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_367 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031093	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_198 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031114	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_182 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031548	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3	Host-Associated	Open in IMG/M
3300031731	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1	Host-Associated	Open in IMG/M
3300031740	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05	Environmental	Open in IMG/M
3300031901	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2	Host-Associated	Open in IMG/M
3300031995	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2	Host-Associated	Open in IMG/M
3300032004	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3	Host-Associated	Open in IMG/M
3300032080	Soil microbial communities from Southern Great Plains, Lamont, Oklahoma, United States - SGP_1_2016	Environmental	Open in IMG/M
3300032159	Agave microbial communities from Guanajuato, Mexico - As.Ma.e (v2)	Host-Associated	Open in IMG/M
3300034172	Sub-biocrust soil microbial communities from Mojave Desert, California, United States - 9HMS	Environmental	Open in IMG/M
3300034174	Sub-biocrust soil microbial communities from Mojave Desert, California, United States - 28HNS	Environmental	Open in IMG/M
3300034402	Sub-biocrust soil microbial communities from Mojave Desert, California, United States - 56SNS	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
F14TB_1001566631	3300001431	Soil	MSTDAGSGFDNQAAGRDTGDAGLEDLEEETTHLGDEDLEEDLERK
JGI25407J50210_101107132	3300003373	Tabebuia Heterophylla Rhizosphere	VTPVTTDAGSEFDSKAAGRDAGDERLEEESRHLLGEDTDDGALAEERERKQSRDSVNDAF
JGI25407J50210_101911751	3300003373	Tabebuia Heterophylla Rhizosphere	MTTDAGSGFDNQAAGRDAGDDRLEEESRHVIGEDAGDSALEEDRERKQVEDQXNDAF*
Ga0070668_1000356723	3300005347	Switchgrass Rhizosphere	MSTDAGSGFDNQAAGRDTGDERLEEETRRLGDDAGEDALEELERKQSRDSVNDAF*
Ga0070697_1007680411	3300005536	Corn, Switchgrass And Miscanthus Rhizosphere	DAGSSFDNQAAGRDTGDERLEEETRRLGDDAGEDALEELERKQARDSVNDAF*
Ga0058697_101942182	3300005562	Agave	MSTDAGSGFDNQAAARDAGDDRLEEESRHVIGEDAGDAALEEDRERQQVEDQVNDAF*
Ga0068861_1004933633	3300005719	Switchgrass Rhizosphere	MSTDAGSGFDNQAAGRDTGDERLEEETSRLGDDAGEDALEELERKQARDSVNDAF*
Ga0081538_100095002	3300005981	Tabebuia Heterophylla Rhizosphere	MTTDAGSGFDNQAAGRDAGDDRLEEESRHVIGEDAGDSALEEDRERKQVEDQVNDAF*
Ga0081538_100110913	3300005981	Tabebuia Heterophylla Rhizosphere	VTTDAGSEFDSKAAGRDAGDERLEEESRHLLGEDTDDGALAEERERKQSRDSVNDAF*
Ga0081538_100823932	3300005981	Tabebuia Heterophylla Rhizosphere	MSTDAGSGFDDQAAGRDAGDERVVEEESRHLLGEDAGDGTLEERREREQSQDQVNDAF*
Ga0074051_113923252	3300006572	Soil	MSTDAGSGFDNQAAGRDTGDERLEEETRRLGDDAGEDALEELERKQSRDNVNDAF*
Ga0075428_1001405172	3300006844	Populus Rhizosphere	MTTDAGSGFDRQAAGRDAGDERLEEETRPSGDDDAGDGAVEEKRERKHSHDSVNDAFGGSGGA*
Ga0075421_1002565524	3300006845	Populus Rhizosphere	MTTDAGSGFDDQAAARDAGDELLEEESRHLIGEDAGDDALEEERERKQSHDNVNDAF*
Ga0075418_107144582	3300009100	Populus Rhizosphere	MTTDAGSGFDDQAAARDAGDELLEEESRHLIGDDAGDDALEEERERKQSHDNVNDAF*
Ga0114129_106613202	3300009147	Populus Rhizosphere	MSTDAGSSFDNQAAGRDSGDERLEEETRRLGDDAGEDALEELERK
Ga0111538_126666102	3300009156	Populus Rhizosphere	VSGGDLMSTDAGSGFDNQAAGRDTGDERLEEETSRLGDDAGEDALEELERKQARDSVNDAF*
Ga0105249_100758373	3300009553	Switchgrass Rhizosphere	MSTDAGSSFDNQAAGRDSGDERLEEETRRLGDDAGEDALEELERKQSRDSVNDAF*
Ga0126307_101530832	3300009789	Serpentine Soil	MTTDAGSGFDNQSAGRDAGDEILEEESRHLLGEDAGDGAFEEDRERKQSQDSVNDAF*
Ga0126313_100115438	3300009840	Serpentine Soil	MTTDAGSGFDNQAAGRDVGDERLEEEARHLGDDAGEDALGEDALEELERKRSQDSVNDAF
Ga0126315_100523054	3300010038	Serpentine Soil	MTTDAGSGFDNQAAARDVGDDRLEEESRHVIGEDAGDAALEEDRERQQVEDQVNDAF*
Ga0126309_102356371	3300010039	Serpentine Soil	AAGRDAGDERLEEEARHLGDDAGEDALGEDTLEEFERKRSQDSVNDAF*
Ga0126314_101254333	3300010042	Serpentine Soil	MTTDAGSGFDNQAAGRDVGDERLEEEARHLGDDAGEDALGEDTLEEFERKRSQDSVNDAF
Ga0126314_104346511	3300010042	Serpentine Soil	DPMTTDAGSGFDNQAAGRDAGDSRLEEESRHLIGDDADDRALEEDRERQQVEDQVNDAF*
Ga0126310_100349802	3300010044	Serpentine Soil	MTTDAGSGFDNQAAARDVGDDRLEEESRHVIGEDVGDAALEEDRERQQVEDQVNDAF*
Ga0126321_12253422	3300010145	Soil	MSTDAGSGFDNQAAARDAGDDRLEEESRHLIGEDAGDAALEEDRERQQVEDQVNDAF*
Ga0126321_12738292	3300010145	Soil	PMTTDAGSGFDNQAAGRDAGDDRLEEESRHLVGDDAGDADLEEDRERQQVEDQINDAF*
Ga0126306_100124979	3300010166	Serpentine Soil	MTTDAGSGFDNQSAGRDAGDEILEEESRHLLGEDAGDGALEEDRERKQSQDSVNDAF*
Ga0126306_118059852	3300010166	Serpentine Soil	MTTDAGSGFDNQAAGRDVGDERLEEEARHLGDDAGEDALGEDALEDFERKRSHDSVNDAF
Ga0134127_105044441	3300010399	Terrestrial Soil	VSGGDLMSTDAGSGFDNQAAGRDTGDERLEEETSRLGDDAGEDALEELERKRSRDS
Ga0138505_1000071461	3300010999	Soil	MTTDAGSGFDNQAAGRDAGDDRLEEETRHLFGEDAGDGALEEERERKRSQDNINDAF*
Ga0138505_1000756361	3300010999	Soil	MSTDAGSGFDNQAAGRDTGDARLEDLEEETTHLGDEDLEDDLERKQSQD
Ga0162651_1000023682	3300012938	Soil	MTTDAGSGFDNQAAGRDAGDERLEEEPRHLGDDAGEDALDELERKRSQDSVNDAF*
Ga0162651_1000180711	3300012938	Soil	SGFDNQAAGRDAGDDRLEEETRHLLSEDAGDPAVDQEARERKQAEDQVNEAF*
Ga0157372_107939992	3300013307	Corn Rhizosphere	VSGGDLMSTDAGSGFDNQAAGRDTGDERLEEETSRLGDDAGEDALEELERKQSRDSVNDAF*
Ga0182000_101040302	3300014487	Soil	MTTDAGSGFDNQAAARDAGDDRLEEESRHVIGEDAGDAALEEDRERQQVEDQVNDAF*
Ga0182001_100084664	3300014488	Soil	MTTDAGSGFDNQAAGRDAGDDRLEEESRHLLSEDAGDDVLEEDRERKQTQDNVNDAF*
Ga0184610_10090402	3300017997	Groundwater Sediment	MSTDAGSGFDNQAAGRDTGDERLEEETRRLGDDAGEDALEELERKQSRDSVNEAF
Ga0184604_100809171	3300018000	Groundwater Sediment	MTTDAGSGFDNQAASRDTGDDRLEDESRHILAEDADDELLEEARERKQSQDDLNDAF
Ga0184604_101753852	3300018000	Groundwater Sediment	MTTDAGSGFDNQAAGRDAGDERLEEEPRHLGDDAGEDALDELGRKRSQDS
Ga0184605_100310811	3300018027	Groundwater Sediment	MTTDAGSGFDNQAAGRDAGDERLEEEPRHLGDDAGEDALDELGRKRSQDSVND
Ga0184626_102396562	3300018053	Groundwater Sediment	MSTDAGSGFDNQAAGRDAGDERLDEATHHLGDDAGEDAPEEELERKQSRD
Ga0184621_100063492	3300018054	Groundwater Sediment	MSTDAGSGFDNQAAGRDTGDERLEEETRRLGDDAGEDAMEELEQKQARDSVNDAF
Ga0184621_100799392	3300018054	Groundwater Sediment	MTTDAGSGFDNQAASRDTGDDRLEDESRHILAEDADDELLEEARERKRSQADLNDAF
Ga0184617_10126912	3300018066	Groundwater Sediment	MTTDAGSGFDNQAAGRDAGDERLEEETRHLGDDAGEDAVEELERKQSRDSVNDAF
Ga0184617_10346892	3300018066	Groundwater Sediment	MTTDAGSGFDNQAAGRDAGDDRLEEASRHLIADDADAEALEEDRERQQVEDQINDAF
Ga0184617_12078702	3300018066	Groundwater Sediment	MSTDAGSGFDNQAAGRDAGEERLEEETRHLGDDAGEDALEELERKRSQDSVNDAF
Ga0184618_102391232	3300018071	Groundwater Sediment	MTTDAGSGFDNRAAGRDAGEERLEEETRHLGDDAGEDALEELERKRSQDSV
Ga0184635_104196421	3300018072	Groundwater Sediment	PMTTDAGSGFDNQAAGRDAGDERLDEETRHLGDDAGEDALEELERKRSQDSVNDAF
Ga0184624_100906291	3300018073	Groundwater Sediment	GDPMSTDAGSGFDNQAAGRDAGDERLEEATCHLGDDVGEDAPEEELERKQSRDSVNDAF
Ga0184640_100736551	3300018074	Groundwater Sediment	MSTDAGSGFDNQAAGRDTGDERLEEETRRLGDDAGEDALEELERKRSQDSVNDAF
Ga0190265_101162593	3300018422	Soil	MTTDAGSGFDNQSAGRDAGDEILEEESRHLLGEDAGDGALVEDRERKQSQDKVNDAF
Ga0190275_109636492	3300018432	Soil	MTTDAGSGFDNQAAGRDAGDDRLEEESRHVVAEDAGDEVLEGERERKRVQDEVNDAF
Ga0190269_103777532	3300018465	Soil	MTTDAGSGFDNQAASRDTGDDRLEDKSRQILAEDADDELLEEARERKQSQDDLNDAF
Ga0190269_109283112	3300018465	Soil	MTTDAGSGFDNQAAGRDAGDDRLEEETRHLLGEDAGNDAHEEDRERKQSQENVNDAF
Ga0190268_102202863	3300018466	Soil	DNQAAGRDAGDDRLEEETRHLLGEDAGNDAHEEDRERKQSQENVNDAF
Ga0190268_112842202	3300018466	Soil	MTTDAGSGFDNQAAGRDAGDEILEEESRHLLGEDAGDGALEEDRERKQSQDKVNDAF
Ga0184641_14521761	3300019254	Groundwater Sediment	PMTTDAGSGFDNQAASRDTGDDRLEDESRHILAEDADDELLEEARERKQSQDDLNDAF
Ga0184644_10081412	3300019269	Groundwater Sediment	FDNQAAGRDTGDERLEEETRRLGDDAGEDALEELERKQSRDSVNDAF
Ga0173481_102818151	3300019356	Soil	MTSDAGSGFDDQAAGRDAGEDRLQEESRHVIADDAGDEALQEARQRQQVEDQINDAF
Ga0190264_104190192	3300019377	Soil	MTTDAGSGFDNQSAGRDAGDEILEEESRHLLGEDAGDGALEEDRERKQSQDKVNDAF
Ga0190267_101213182	3300019767	Soil	MSTDAGSSFDNQAAGRDTGDERLEEETRRLGDDAGEDALEELERKQSRDSVNDAF
Ga0193704_10268672	3300019867	Soil	MSTDAGSGFDNQAAGRDTGDERLEEETRRLGDDAGEDALEELERKQSRDSVNDAF
Ga0210381_101809672	3300021078	Groundwater Sediment	MTTDAGSGFDHQAASRDTGDDRLEDESRHILAEDADDELLEEARERKQSQDDLNDAF
Ga0222624_11891722	3300021951	Groundwater Sediment	MTTDAGSGFDNQAAGRDTGDERLEEETRRLGDDAGEDALEELERKQSRDSVNDAF
Ga0222625_14898642	3300022195	Groundwater Sediment	MTTDAGSGFDNQAASRDTGDDRLEGESRHILGEDADDELLEEARERKRSQADLNDAF
Ga0222625_15558971	3300022195	Groundwater Sediment	SGFDNQAAGRDAGDERLEEETRHLGDDAGEDAVEELERKQSRDSVNDAF
Ga0222625_17980482	3300022195	Groundwater Sediment	MSTDAGSGFDNQAAGRDTGDERLEEETRRLGDDAGEDALEELERKQSR
Ga0207712_102061014	3300025961	Switchgrass Rhizosphere	MSTDAGSSFDNQAAGRDSGDERLEEETRRLGDDAGEDALEELERKQSRDSVNDAF
Ga0207668_105005672	3300025972	Switchgrass Rhizosphere	MSTDAGSGFDNQAAGRDTGDERLEEETRRLGDDAGEDALEELERKQARDSVNDAF
Ga0207675_10000130112	3300026118	Switchgrass Rhizosphere	MSTDAGSSFDNQAAGRDSGDERLEEETRRLGDDAGEDALEELERKQARDSVNDAF
Ga0209795_101333412	3300027718	Agave	MTTDAGSGFDNQAAARDAGDDRLEEESRHVIGEDAGDAALEEDRERQQVEDQINDAF
Ga0209574_100439542	3300027809	Agave	MTTDAGSGFDDRAAARDAGDDRLEEESRHLLGEDAGDAALEEDRERQQVEDQINDAF
Ga0209574_102699032	3300027809	Agave	MSTDAGSGFDNQAAGRDTGDARLDDLEEETTHLGDEDLEEELERKQSQDNVNDAF
Ga0268265_112563332	3300028380	Switchgrass Rhizosphere	MSTDAGSSFDNQAAGRDTGDERLEEETRRLGDDAGEDALEELERKQSRDSVNDA
Ga0247818_102864962	3300028589	Soil	MSTDAGSGFDNQAAGRDTGDERLEEETSRLGDDAGEDALEELERKQARDSVNDAF
Ga0247818_106703421	3300028589	Soil	MTTDAGSGFDDQAAARDAGDELLEEESRHLIGEDAGDDALEEERERKQSHDNVNDAF
Ga0247819_101926441	3300028608	Soil	MSTDAGSGFDNQAAGRDTGDERLEEETSRLGDDAGEDALEELERKQARDSVND
Ga0247819_102141311	3300028608	Soil	FDNRAAGRDTGDERLEEETSRLGDDAGEDALEELERKQARDSVNDAF
Ga0307321_10443782	3300028704	Soil	MTTDAGSGFDNQAASRDTGDDRLDDESRHTLAEDADDELLEEARERKQTQD
Ga0307321_11222301	3300028704	Soil	MSTDAGSGFDNQAAGRDAGDERLEEETRHLGDDAGEDALEELERKRSQDSVNDAF
Ga0307295_100094351	3300028708	Soil	MTTDAGSGFDNQAAGRDAGDERLEEETRHLGDDAGEDALEVLERKRSQDSVNDAL
Ga0307322_100230112	3300028710	Soil	MTTDAGSGFDNQAASRDTGDDRLEDESRHILAEDADDELLEEARERKQSRDDLNDAF
Ga0307285_100252341	3300028712	Soil	MTTDAGSGFDNQAAGRDAGEERLEEETRHLGDDAGEDALEELERKRSQDSVNDAF
Ga0307313_102173352	3300028715	Soil	MTTDAGSGFDHQAASRDTGDDRLEDESRHILAEDADDELLEEARERKKSQGDLNDAF
Ga0307298_101415561	3300028717	Soil	SRDTGDDRLEDESRHILAEDADDELLEEARERKQSQDDLNDAF
Ga0307319_100324384	3300028722	Soil	MTTDAGSGFDNQAAGRDAGDERLEEEPRHLGDDAGEDALDELERKRSQDSVNDAF
Ga0307319_102238362	3300028722	Soil	MTTDAGSGFDNQAAGRDAGDERLEEEARHLGDDAGEDALGEDALEDFERKRSQDSVNDAF
Ga0307318_100065117	3300028744	Soil	MSTDAGSGFDNQAAGRDAGDERLDEETRHLGDDAGEDALEELERKRSQDSVNDAF
Ga0307318_102884281	3300028744	Soil	MTTDAGSGFDNQAAGRDAGDERLEEEPRHLGDDAGEDALDELGRKRSQDSVNDAF
Ga0307297_100148842	3300028754	Soil	MTTDAGSGFDNQAAGRDVGDERLEEETRHLGDDAGEDALEELERKRSQDSVNDAF
Ga0307320_100587852	3300028771	Soil	MSTDAGSGFDNQAAGRDTGDARLEDLEEETTHLGDEDLEEDLERKQSQDSVNDAF
Ga0307287_100269072	3300028796	Soil	MTTDAGSGFDNQAASRDTGDDRLEGESRHILGEDADDELLEEARERKQSRDDLNDAF
Ga0247825_100753632	3300028812	Soil	MTTEAGSGFDDQAAARDAGDELLEEESRHLIGEDAGDDALEEERERKQSHDNVNDAF
Ga0307296_103125541	3300028819	Soil	GGDPMTTDAGSGFDNQAAGRDAGDERLEEETRHLGDDAGEDAVEELERKQSRDSVNDAF
Ga0307310_102670011	3300028824	Soil	DPMTTDAGSGFDNQAAGRDAGDDRLEEASRHLIADDADAEALEEDRERQQVEDQINDAF
Ga0307286_100015311	3300028876	Soil	MTTDAGSGFDNQAAGRDAGDDRLEEASRHLIADDADAEALEEDRERQQVEDKI
Ga0307308_100851593	3300028884	Soil	MTTDAGSGFDNQAASRDTGDDRLEDESRHILAEDADDELLEEARERKQSQDDLND
Ga0307308_103741812	3300028884	Soil	DHQAASRDTGDDRLEDESRHILAEDADDELLEEARERKQSQDDLNDAF
Ga0308206_11229061	3300030903	Soil	TDAGSGFDNQAAGRDAGDERLDEATHHLGDDAGEDAPEEELERKQSRDSVNDAF
Ga0308206_11384101	3300030903	Soil	GFDNQAASRDTGDDRLEGESRHILGEDADDELLEEARERKQSRDDLNDAF
Ga0308200_11847671	3300030905	Soil	TTDAGSGFDNQAAGRDAGEERLEEETRHLGDDAGEDAVEELERKQSRDSVNDAF
Ga0308201_100266051	3300031091	Soil	MTTDAGSGFDNQAAGRDAGDERLEEETRHLGDDAGEDALGEDAVEELERKQSRDSVNDAF
Ga0308204_100654982	3300031092	Soil	MTTDAGSGFDNQAASRDTGDDRLDDESRHILAEDADDELLEEARERKQTQDDVNDAF
Ga0308204_102097041	3300031092	Soil	PMTTDAGSGFDNQAAGRDAGDERLEEETRHLGDDAGEDAVEELERKQSRDSVNDAF
Ga0308204_102420892	3300031092	Soil	MTTDAGSGFDNQAAGRDAGDERLDEATHHLGDDAGEDAPEEELERKQSRDSVNDAF
Ga0308204_102887741	3300031092	Soil	PMSTDAGSGFDNQAAGRDTGDERLEEETRRLGDDAGEDALEELERKQSRDSVNDAF
Ga0308197_101344491	3300031093	Soil	GSGGDPMTTDAGSGFDNQAAGRDAGDDRLEEASRHLIADDADAEALEEDRERQQVEDQINDAF
Ga0308187_101529532	3300031114	Soil	MTTDAGSGFDHQAASRDTGDDRLEDESRHILAEDADDELLEEARERKQSRDDLNDAF
Ga0307408_1011817652	3300031548	Rhizosphere	MTTDAGSGFDNQAAGRDAGDERLEEEARHLGDDAGEDALGEDTLEEFERKRSQDSVNDAF
Ga0307405_109450742	3300031731	Rhizosphere	MTNDAGSGFDNQAAGCDAGDERLEEETRHLGDDAGEDALGEDALEDFERKRSHDSVNDAF
Ga0307468_1000509064	3300031740	Hardwood Forest Soil	DPMSTDAGSSFDNQAAGRDTGDERLEEETRRLGDDAGEDALEELERKQARDSVNDAF
Ga0307406_120625052	3300031901	Rhizosphere	MTTDAGSGFDNQAAGRDAGDSRLEEESRHLIGDDADDSALEEDRERQQVEDQVNDAF
Ga0307409_1026070911	3300031995	Rhizosphere	MTTDAGSGFDNQAAARDVGDDRLEEESRHVIGEDAGDAALEEDRERQQVEDQVNDAF
Ga0307414_101363151	3300032004	Rhizosphere	MTTDAGSGFDNQAAGRDAGDERLEEEARHLGDDAGEDALGEDTLEELERKRSQDSVNDAF
Ga0326721_100909984	3300032080	Soil	MSNDAGSGFDNQAGGRDAGDEILEEESRHLLGEDAGDGALEEDRERKQSQDNVNDAF
Ga0268251_101029862	3300032159	Agave	MTTDAGSGFDNQAAGRDAGDDRLEGLEEESRHLPAEDAGDPDADEARERQQVEDQVNDAF
Ga0334913_021476_1164_1337	3300034172	Sub-Biocrust Soil	MTTDAGSGFDNQAGGRDAGDDRLEEESRHVIGEDAGDSALEEDRERKQVEDQVNDAF
Ga0334913_141846_377_511	3300034172	Sub-Biocrust Soil	ASRDTGDDRLEDESRHLTPDDPDDEVLEEARERKQSQDNVNDAF
Ga0334932_001195_1627_1800	3300034174	Sub-Biocrust Soil	MTTDAGSGFDNQAAGRDAGDDRLEEESRHVIGEDAGDSALEEDRERKQVEDQVNDAF
Ga0334960_029916_584_733	3300034402	Sub-Biocrust Soil	MTTDAGSGFDNQAAGRDAGDDRLEEESRHLLSEDAGDDVLEEERERKQTQ

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F074164

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences