Metagenome / Metatranscriptome Family F073889

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F073889
Family Type	Metagenome / Metatranscriptome
Number of Sequences	120
Average Sequence Length	56 residues
Representative Sequence	MRTLRIARPAQLALTGGLPACHREVWAGLPEAARRQALALLARMIAKGVLDTGIRGEES
Number of Associated Samples	99
Number of Associated Scaffolds	120

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	79.17 %
% of genes near scaffold ends (potentially truncated)	28.33 %
% of genes from short scaffolds (< 2000 bps)	81.67 %
Associated GOLD sequencing projects	93
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.42

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (64.167 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (25.833 % of family members)
Environment Ontology (ENVO)	Unclassified (30.833 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (30.833 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	Yes	Secondary Structure distribution:	α-helix: 31.03% β-sheet: 0.00% Coil/Unstructured: 68.97%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.42
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.42
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 120 Family Scaffolds
PF00239	Resolvase	42.50
PF13408	Zn_ribbon_recom	15.00
PF07508	Recombinase	6.67
PF08281	Sigma70_r4_2	0.83
PF00589	Phage_integrase	0.83
PF13613	HTH_Tnp_4	0.83
PF00665	rve	0.83
PF00296	Bac_luciferase	0.83
PF02452	PemK_toxin	0.83

COG ID	Name	Functional Category	% Frequency in 120 Family Scaffolds
COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	Replication, recombination and repair [L]	49.17
COG2452	Predicted site-specific integrase-resolvase	Mobilome: prophages, transposons [X]	42.50
COG2141	Flavin-dependent oxidoreductase, luciferase family (includes alkanesulfonate monooxygenase SsuD and methylene tetrahydromethanopterin reductase)	Coenzyme transport and metabolism [H]	0.83
COG2337	mRNA-degrading endonuclease MazF, toxin component of the MazEF toxin-antitoxin module	Defense mechanisms [V]	0.83
COG2801	Transposase InsO and inactivated derivatives	Mobilome: prophages, transposons [X]	0.83
COG2826	Transposase and inactivated derivatives, IS30 family	Mobilome: prophages, transposons [X]	0.83
COG3316	Transposase (or an inactivated derivative), DDE domain	Mobilome: prophages, transposons [X]	0.83
COG4584	Transposase	Mobilome: prophages, transposons [X]	0.83

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	64.17 %
Unclassified	root	N/A	35.83 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	64.17 %
Unclassified	root	N/A	35.83 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	64.17 %
Unclassified	root	N/A	35.83 %

Name	Rank	Taxonomy	Distribution
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	38.33 %
Unclassified	root	N/A	35.83 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.83 %

Name	Rank	Taxonomy	Distribution
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	36.67 %
Unclassified	root	N/A	35.83 %
Firmicutes	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	0.83 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	35.83 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	22.50 %
Acidimicrobiia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia	3.33 %
Bacilli	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli	0.83 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	35.83 %
Corynebacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales	5.83 %
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	5.00 %
Acidimicrobiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales	3.33 %
Bacillales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales	0.83 %
Micromonosporales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales	0.83 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	35.83 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	5.00 %
Acidimicrobiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Acidimicrobiaceae	3.33 %
Mycobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae	3.33 %
Alicyclobacillaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Alicyclobacillaceae	0.83 %
Micromonosporaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae	0.83 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	35.83 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	5.00 %
Acidiferrimicrobium	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Acidimicrobiaceae → Acidiferrimicrobium	3.33 %
Mycobacterium	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium	3.33 %
Salinispora	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Salinispora	0.83 %
Alicyclobacillus	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Alicyclobacillaceae → Alicyclobacillus	0.83 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	35.83 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	5.00 %
unclassified Acidiferrimicrobium	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Acidimicrobiaceae → Acidiferrimicrobium → unclassified Acidiferrimicrobium	3.33 %
Mycobacterium kansasii	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium → Mycobacterium kansasii	1.67 %
Salinispora pacifica	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Salinispora → Salinispora pacifica	0.83 %
Alicyclobacillus tolerans	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Alicyclobacillaceae → Alicyclobacillus → Alicyclobacillus tolerans	0.83 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	35.83 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	5.00 %
Acidiferrimicrobium sp. IK	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Acidimicrobiaceae → Acidiferrimicrobium → unclassified Acidiferrimicrobium → Acidiferrimicrobium sp. IK	3.33 %
Mycobacterium kansasii	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium → Mycobacterium kansasii	1.67 %
Salinispora pacifica	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Salinispora → Salinispora pacifica	0.83 %
Alicyclobacillus tolerans	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Alicyclobacillaceae → Alicyclobacillus → Alicyclobacillus tolerans	0.83 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.83 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000956\|JGI10216J12902_106385209	Not Available	653	Open in IMG/M
3300005167\|Ga0066672_10391660	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium → Mycobacterium kansasii	909	Open in IMG/M
3300005172\|Ga0066683_10020200	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	3710	Open in IMG/M
3300005329\|Ga0070683_101906642	Not Available	571	Open in IMG/M
3300005332\|Ga0066388_100170711	All Organisms → cellular organisms → Bacteria	2774	Open in IMG/M
3300005332\|Ga0066388_102173586	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium	1001	Open in IMG/M
3300005435\|Ga0070714_100109701	All Organisms → cellular organisms → Bacteria	2442	Open in IMG/M
3300005445\|Ga0070708_100013811	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	6629	Open in IMG/M
3300005445\|Ga0070708_100030015	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales	4695	Open in IMG/M
3300005524\|Ga0070737_10035868	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2961	Open in IMG/M
3300005559\|Ga0066700_10319854	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1095	Open in IMG/M
3300005561\|Ga0066699_10613627	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	781	Open in IMG/M
3300005764\|Ga0066903_101850819	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales	1155	Open in IMG/M
3300006059\|Ga0075017_100581731	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	855	Open in IMG/M
3300006162\|Ga0075030_101004072	Not Available	657	Open in IMG/M
3300006174\|Ga0075014_100186018	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1038	Open in IMG/M
3300006796\|Ga0066665_10702995	All Organisms → cellular organisms → Bacteria	800	Open in IMG/M
3300006796\|Ga0066665_11126247	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium → Mycobacterium kansasii	598	Open in IMG/M
3300006806\|Ga0079220_10407092	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	891	Open in IMG/M
3300006854\|Ga0075425_101721122	Not Available	705	Open in IMG/M
3300007076\|Ga0075435_101311422	Not Available	634	Open in IMG/M
3300009038\|Ga0099829_10152335	Not Available	1846	Open in IMG/M
3300009038\|Ga0099829_10483404	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1027	Open in IMG/M
3300009090\|Ga0099827_10072329	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Acidimicrobiaceae → Acidiferrimicrobium → unclassified Acidiferrimicrobium → Acidiferrimicrobium sp. IK	2667	Open in IMG/M
3300009090\|Ga0099827_10602527	Not Available	947	Open in IMG/M
3300009090\|Ga0099827_10752412	Not Available	843	Open in IMG/M
3300009137\|Ga0066709_100141343	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Acidimicrobiaceae → Acidiferrimicrobium → unclassified Acidiferrimicrobium → Acidiferrimicrobium sp. IK	3056	Open in IMG/M
3300010048\|Ga0126373_10743829	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1040	Open in IMG/M
3300010360\|Ga0126372_10837779	Not Available	915	Open in IMG/M
3300010361\|Ga0126378_12021673	Not Available	657	Open in IMG/M
3300010361\|Ga0126378_12186533	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	631	Open in IMG/M
3300010366\|Ga0126379_10178649	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2015	Open in IMG/M
3300010376\|Ga0126381_100250318	Not Available	2400	Open in IMG/M
3300010379\|Ga0136449_102173479	Not Available	811	Open in IMG/M
3300011269\|Ga0137392_10524934	All Organisms → cellular organisms → Bacteria	983	Open in IMG/M
3300012199\|Ga0137383_11105133	All Organisms → cellular organisms → Bacteria	574	Open in IMG/M
3300012201\|Ga0137365_10056790	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2957	Open in IMG/M
3300012201\|Ga0137365_10251347	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1315	Open in IMG/M
3300012201\|Ga0137365_10409669	Not Available	1000	Open in IMG/M
3300012201\|Ga0137365_10968693	Not Available	618	Open in IMG/M
3300012202\|Ga0137363_10075909	Not Available	2489	Open in IMG/M
3300012204\|Ga0137374_10791113	All Organisms → cellular organisms → Bacteria	704	Open in IMG/M
3300012206\|Ga0137380_10073451	Not Available	3129	Open in IMG/M
3300012208\|Ga0137376_10637075	All Organisms → cellular organisms → Bacteria	921	Open in IMG/M
3300012211\|Ga0137377_10159617	All Organisms → cellular organisms → Bacteria	2161	Open in IMG/M
3300012211\|Ga0137377_11841294	All Organisms → cellular organisms → Bacteria	524	Open in IMG/M
3300012285\|Ga0137370_10729892	Not Available	615	Open in IMG/M
3300012349\|Ga0137387_10504422	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium	878	Open in IMG/M
3300012350\|Ga0137372_10177315	All Organisms → cellular organisms → Bacteria	1722	Open in IMG/M
3300012351\|Ga0137386_10157643	Not Available	1625	Open in IMG/M
3300012356\|Ga0137371_10873186	All Organisms → cellular organisms → Bacteria	684	Open in IMG/M
3300012361\|Ga0137360_11884142	Not Available	504	Open in IMG/M
3300012362\|Ga0137361_11657376	Not Available	560	Open in IMG/M
3300016319\|Ga0182033_10080514	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2329	Open in IMG/M
3300016422\|Ga0182039_11402941	Not Available	635	Open in IMG/M
3300017821\|Ga0187812_1106765	All Organisms → cellular organisms → Bacteria	913	Open in IMG/M
3300017926\|Ga0187807_1021102	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	2010	Open in IMG/M
3300017926\|Ga0187807_1126025	Not Available	812	Open in IMG/M
3300017932\|Ga0187814_10187662	All Organisms → cellular organisms → Bacteria → Terrabacteria group	776	Open in IMG/M
3300017932\|Ga0187814_10205530	Not Available	741	Open in IMG/M
3300017966\|Ga0187776_10152612	All Organisms → cellular organisms → Bacteria	1422	Open in IMG/M
3300018482\|Ga0066669_11257071	Not Available	669	Open in IMG/M
3300019885\|Ga0193747_1010922	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Acidimicrobiaceae → Acidiferrimicrobium → unclassified Acidiferrimicrobium → Acidiferrimicrobium sp. IK	2193	Open in IMG/M
3300021086\|Ga0179596_10043105	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1827	Open in IMG/M
3300021560\|Ga0126371_10301691	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1729	Open in IMG/M
3300021560\|Ga0126371_12814886	Not Available	590	Open in IMG/M
3300021860\|Ga0213851_1603551	Not Available	997	Open in IMG/M
3300025910\|Ga0207684_10124870	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2207	Open in IMG/M
3300025915\|Ga0207693_10070643	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2732	Open in IMG/M
3300025928\|Ga0207700_10060548	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Acidimicrobiaceae → Acidiferrimicrobium → unclassified Acidiferrimicrobium → Acidiferrimicrobium sp. IK	2868	Open in IMG/M
3300025928\|Ga0207700_10437489	All Organisms → cellular organisms → Bacteria	1151	Open in IMG/M
3300026327\|Ga0209266_1040382	Not Available	2383	Open in IMG/M
3300026360\|Ga0257173_1050778	Not Available	587	Open in IMG/M
3300026538\|Ga0209056_10483785	All Organisms → cellular organisms → Bacteria	662	Open in IMG/M
3300027882\|Ga0209590_10027065	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2980	Open in IMG/M
3300027882\|Ga0209590_10199580	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1264	Open in IMG/M
3300027911\|Ga0209698_10175920	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1743	Open in IMG/M
3300027968\|Ga0209061_1052322	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Alicyclobacillaceae → Alicyclobacillus → Alicyclobacillus tolerans	1677	Open in IMG/M
3300028884\|Ga0307308_10322905	All Organisms → cellular organisms → Bacteria	739	Open in IMG/M
3300028906\|Ga0308309_11643890	Not Available	546	Open in IMG/M
3300031543\|Ga0318516_10334197	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	875	Open in IMG/M
3300031544\|Ga0318534_10194837	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1170	Open in IMG/M
3300031544\|Ga0318534_10372020	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	822	Open in IMG/M
3300031544\|Ga0318534_10426048	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	761	Open in IMG/M
3300031549\|Ga0318571_10411222	Not Available	530	Open in IMG/M
3300031561\|Ga0318528_10458169	Not Available	685	Open in IMG/M
3300031572\|Ga0318515_10259902	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	931	Open in IMG/M
3300031681\|Ga0318572_10322343	Not Available	915	Open in IMG/M
3300031681\|Ga0318572_10693961	Not Available	606	Open in IMG/M
3300031713\|Ga0318496_10342348	All Organisms → cellular organisms → Bacteria	826	Open in IMG/M
3300031724\|Ga0318500_10642551	Not Available	539	Open in IMG/M
3300031747\|Ga0318502_10240553	Not Available	1055	Open in IMG/M
3300031748\|Ga0318492_10465603	Not Available	669	Open in IMG/M
3300031751\|Ga0318494_10447329	All Organisms → cellular organisms → Bacteria	751	Open in IMG/M
3300031765\|Ga0318554_10102639	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales	1608	Open in IMG/M
3300031765\|Ga0318554_10265259	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Salinispora → Salinispora pacifica	978	Open in IMG/M
3300031793\|Ga0318548_10138114	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1185	Open in IMG/M
3300031796\|Ga0318576_10491505	Not Available	579	Open in IMG/M
3300031798\|Ga0318523_10077748	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1603	Open in IMG/M
3300031833\|Ga0310917_10089077	Not Available	1969	Open in IMG/M
3300031845\|Ga0318511_10346604	All Organisms → cellular organisms → Bacteria	676	Open in IMG/M
3300031859\|Ga0318527_10300247	All Organisms → cellular organisms → Bacteria	684	Open in IMG/M
3300031880\|Ga0318544_10214367	All Organisms → cellular organisms → Bacteria	744	Open in IMG/M
3300031893\|Ga0318536_10225881	All Organisms → cellular organisms → Bacteria	953	Open in IMG/M
3300031897\|Ga0318520_10147140	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1363	Open in IMG/M
3300031910\|Ga0306923_11331015	All Organisms → cellular organisms → Bacteria	760	Open in IMG/M
3300031912\|Ga0306921_11820687	Not Available	654	Open in IMG/M
3300031954\|Ga0306926_10683158	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1247	Open in IMG/M
3300031962\|Ga0307479_11463905	Not Available	640	Open in IMG/M
3300032060\|Ga0318505_10111881	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1244	Open in IMG/M
3300032068\|Ga0318553_10178736	All Organisms → cellular organisms → Bacteria	1104	Open in IMG/M
3300032076\|Ga0306924_10725147	All Organisms → cellular organisms → Bacteria	1114	Open in IMG/M
3300032089\|Ga0318525_10317860	All Organisms → cellular organisms → Bacteria	799	Open in IMG/M
3300032091\|Ga0318577_10338061	Not Available	720	Open in IMG/M
3300032094\|Ga0318540_10261266	All Organisms → cellular organisms → Bacteria	836	Open in IMG/M
3300032261\|Ga0306920_100839529	All Organisms → cellular organisms → Bacteria	1346	Open in IMG/M
3300032828\|Ga0335080_10774503	All Organisms → cellular organisms → Bacteria	994	Open in IMG/M
3300032828\|Ga0335080_11185871	All Organisms → cellular organisms → Bacteria	768	Open in IMG/M
3300032896\|Ga0335075_11238884	Not Available	643	Open in IMG/M
3300033486\|Ga0316624_11344046	Not Available	653	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	98.33%
Host-Associated	Host-Associated	1.67%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	90.00%
Aquatic	Environmental → Aquatic	8.33%
Plants	Host-Associated → Plants	1.67%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	90.00%
Freshwater	Environmental → Aquatic → Freshwater	5.00%
Sediment	Environmental → Aquatic → Sediment	3.33%
Rhizosphere	Host-Associated → Plants → Rhizosphere	1.67%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	75.83%
Loam	Environmental → Terrestrial → Soil → Loam	10.00%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	4.17%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	4.17%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	3.33%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	1.67%
Sediment	Environmental → Aquatic → Freshwater → Sediment	0.83%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	33.33%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	32.50%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	9.17%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	6.67%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	4.17%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	4.17%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	3.33%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	3.33%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	1.67%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	0.83%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.83%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	25.83%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	22.50%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	7.50%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	6.67%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	5.83%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	5.00%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	4.17%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	3.33%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	3.33%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	2.50%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.67%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	1.67%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	1.67%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	1.67%
Watersheds	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Watersheds	0.83%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	0.83%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.83%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.83%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	0.83%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	0.83%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	0.83%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	0.83%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300005167	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_121	Environmental	Open in IMG/M
3300005172	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_132	Environmental	Open in IMG/M
3300005329	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005435	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG	Environmental	Open in IMG/M
3300005445	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG	Environmental	Open in IMG/M
3300005524	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen10_05102014_R1	Environmental	Open in IMG/M
3300005559	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_149	Environmental	Open in IMG/M
3300005561	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_148	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006059	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2012	Environmental	Open in IMG/M
3300006162	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2012	Environmental	Open in IMG/M
3300006174	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2014	Environmental	Open in IMG/M
3300006796	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114	Environmental	Open in IMG/M
3300006806	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100	Environmental	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300007076	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4	Host-Associated	Open in IMG/M
3300009038	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG	Environmental	Open in IMG/M
3300009090	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG	Environmental	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010379	Sb_50d combined assembly	Environmental	Open in IMG/M
3300011269	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4A metaG	Environmental	Open in IMG/M
3300012199	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_40_16 metaG	Environmental	Open in IMG/M
3300012201	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_40_16 metaG	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012204	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_100_16 metaG	Environmental	Open in IMG/M
3300012206	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_100_16 metaG	Environmental	Open in IMG/M
3300012208	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_20_16 metaG	Environmental	Open in IMG/M
3300012211	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_40_16 metaG	Environmental	Open in IMG/M
3300012285	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_20_16 metaG	Environmental	Open in IMG/M
3300012349	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Sage2_R_115_16 metaG	Environmental	Open in IMG/M
3300012350	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_60_16 metaG	Environmental	Open in IMG/M
3300012351	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_100_16 metaG	Environmental	Open in IMG/M
3300012356	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_40_16 metaG	Environmental	Open in IMG/M
3300012361	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaG	Environmental	Open in IMG/M
3300012362	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaG	Environmental	Open in IMG/M
3300016319	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H	Environmental	Open in IMG/M
3300016422	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111	Environmental	Open in IMG/M
3300017821	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW-S_2	Environmental	Open in IMG/M
3300017926	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_2	Environmental	Open in IMG/M
3300017932	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW-S_4	Environmental	Open in IMG/M
3300017966	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP12_20_MG	Environmental	Open in IMG/M
3300018482	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_118	Environmental	Open in IMG/M
3300019885	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L1m2	Environmental	Open in IMG/M
3300021086	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300021860	Metatranscriptome of freshwater sediment microbial communities from post-fracked creek in Pennsylvania, United States - ABR_2014 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300025910	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025915	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025928	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300026327	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_132 (SPAdes)	Environmental	Open in IMG/M
3300026360	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NI-19-B	Environmental	Open in IMG/M
3300026538	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114 (SPAdes)	Environmental	Open in IMG/M
3300027882	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027911	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2012 (SPAdes)	Environmental	Open in IMG/M
3300027968	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen10_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300028884	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_195	Environmental	Open in IMG/M
3300028906	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5 (v2)	Environmental	Open in IMG/M
3300031543	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f20	Environmental	Open in IMG/M
3300031544	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f26	Environmental	Open in IMG/M
3300031549	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f24	Environmental	Open in IMG/M
3300031561	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f26	Environmental	Open in IMG/M
3300031572	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f19	Environmental	Open in IMG/M
3300031681	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f20	Environmental	Open in IMG/M
3300031713	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f22	Environmental	Open in IMG/M
3300031724	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f20	Environmental	Open in IMG/M
3300031747	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f22	Environmental	Open in IMG/M
3300031748	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f22	Environmental	Open in IMG/M
3300031751	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f24	Environmental	Open in IMG/M
3300031765	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f22	Environmental	Open in IMG/M
3300031793	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f21	Environmental	Open in IMG/M
3300031796	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f24	Environmental	Open in IMG/M
3300031798	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f19	Environmental	Open in IMG/M
3300031833	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF178	Environmental	Open in IMG/M
3300031845	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f18	Environmental	Open in IMG/M
3300031859	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f25	Environmental	Open in IMG/M
3300031880	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f25	Environmental	Open in IMG/M
3300031893	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f28	Environmental	Open in IMG/M
3300031897	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f16	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental	Open in IMG/M
3300031954	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)	Environmental	Open in IMG/M
3300031962	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515	Environmental	Open in IMG/M
3300032060	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f18	Environmental	Open in IMG/M
3300032068	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f21	Environmental	Open in IMG/M
3300032076	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)	Environmental	Open in IMG/M
3300032089	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f23	Environmental	Open in IMG/M
3300032091	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f25	Environmental	Open in IMG/M
3300032094	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f25	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300032828	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.4	Environmental	Open in IMG/M
3300032896	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.4	Environmental	Open in IMG/M
3300033486	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_N3_C1_D5_A	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI10216J12902_1063852092	3300000956	Soil	MRTIRIARPAQMACTGLPARHREVWTSLPEAARRRALALLARMIARGVLDAGMPGEES*
Ga0066672_103916602	3300005167	Soil	TLRIARPALAGGSPAPHREVWAGLPEAARRQALALLARMIARGVIDTGIRGEES*
Ga0066683_100202003	3300005172	Soil	MRTLRIARPALAGGSPAPHREVWAGLPEAARRQALALLARMIARGVIDTGIRGEES*
Ga0070683_1019066421	3300005329	Corn Rhizosphere	MRTLRIARPAQMAAGGLPACHREVWAGLPEAARRRALALLARMIARGVI
Ga0066388_1001707112	3300005332	Tropical Forest Soil	MRTLRIARPAQLARAGGMPAHRREVWAGLPEAARRQALALLARMIARGVLDTGMPGEES*
Ga0066388_1021735863	3300005332	Tropical Forest Soil	MRTLRIARPARLALTGGSPAHREVWAGLPQAARRQALALLARMIAKGVLDTGIRGEES*
Ga0070714_1001097012	3300005435	Agricultural Soil	MRTLRIARPARPGLADGSPSLYREVWAGLPEAARRQALALLARMIARGVIDTGIRGEES*
Ga0070708_1000138117	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	MRTLRIARPAQLALTGGLSARHREVWAGLPEAARGRALTLLARMIARGVLDTGIRGEES*
Ga0070708_1000300153	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	MRTLRIARPARLAVAGGQAPHREVWAGLPEAARRRALTLLARMIARGVIDTGIRGEES*
Ga0070737_100358684	3300005524	Surface Soil	MRTLRIARPAQLALTGGLPAPHDEVWAGLPEVARRRALTLLARMIARGVIGTGIRGEES*
Ga0066700_103198541	3300005559	Soil	MRTLRIARPARLALAGGWAAPHREVWAGLPEAARRQALALLARMIAKDVLDTGTPEEES*
Ga0066699_106136272	3300005561	Soil	MRTLRIARPARLALTGGSPPGPHREVWAGLPEAARRQALALLARMIAK
Ga0066903_1018508192	3300005764	Tropical Forest Soil	MRTLRIAQTTLTGGLSACHREVWAGLPEAARRQALALLARMIAKGVIDTGIRGEES*
Ga0075017_1005817311	3300006059	Watersheds	MRTLRIARPAQLALAGGLPARHREVWAGLPEAARRRALTLLARMIARGVLDTGFWGEES*
Ga0075030_1010040721	3300006162	Watersheds	MRTLRIARPAQLALTGGLPARHREVWAGLPEAARRRVLTLLARMIARGVLDTGIGGEES*
Ga0075014_1001860182	3300006174	Watersheds	MRTLRIARPAQLALAGGLPARHREVWAGLPEAARRRALTLLARMIARGVLDTGMPGEES*
Ga0066665_107029953	3300006796	Soil	MRTLRIARPAPLAVTGGSPASRREVWAGLPEAARRRALTLLARMIARGVLDTGIGGVES*
Ga0066665_111262472	3300006796	Soil	RPALAGGSPAPHREVWAGLPEAARRQALALLARMIARGVIDTGIRGEES*
Ga0079220_104070922	3300006806	Agricultural Soil	MRTLRIARPAQLALTGGLPARHREVWAGLPEDARRRAFTLLARMIARGVVDTGIRGEG
Ga0075425_1017211221	3300006854	Populus Rhizosphere	MRTLRIARPAQLALTGGLPARHREVWAGLPEDARRRAFTLLARMIARGVVDTGIRGEGS*
Ga0075435_1013114221	3300007076	Populus Rhizosphere	MRTLRIARPAQLALTGGLPARHREVWAGLPEDARRRAFTLLARMIARGVVDTGIRGEGS
Ga0099829_101523352	3300009038	Vadose Zone Soil	MRTLRIARPARLALAGGSPAPHREVWAGLPEAARRQALALLARMIARGMLDTGIRGEES*
Ga0099829_104834041	3300009038	Vadose Zone Soil	MRTLRIARPAPLALTGGLPACHREVWAGLPEAARRRALTLLARMIARGVLDTGIRGEES*
Ga0099827_100723292	3300009090	Vadose Zone Soil	MRTLRIARPAQLALAGGFPARHREVWASLPEAARRRALALLARMIARGVLDTGIRGEES*
Ga0099827_106025272	3300009090	Vadose Zone Soil	MRTLRIARPAQLALAGGSPTPHREVWAGLPEAARRQALALLARMIARGMLDTGIRGEES*
Ga0099827_107524122	3300009090	Vadose Zone Soil	MRTLRIARPAQLALTGGLPACHREVWAGLPEAARRRALTLLARMIARGVLDTGIRGEES*
Ga0066709_1001413433	3300009137	Grasslands Soil	MRALRIARPALAGGSPAPHREVWAGLPEAARRQALALLARMIARGVIDTGIRGEES*
Ga0126373_107438292	3300010048	Tropical Forest Soil	MRTLRIARPARLALTGGSPAPHREVWAGLPEAARRQALALLARMIAKGVIDTGIRGEES*
Ga0126372_108377792	3300010360	Tropical Forest Soil	MRTLRIARPARLTLTGGSPAHREVWAGLPQAARRQALALLARMIAKGVLDTGIRGEES*
Ga0126378_120216732	3300010361	Tropical Forest Soil	MRTLRIAQTTLTGGLSACHREVWAGLPEAARRQALALLARMIAKGVIDTGIGGEES*
Ga0126378_121865331	3300010361	Tropical Forest Soil	MRTLRIARSAGTVLPARHREVWAGLPEAARRRALTLLARMIARGVLD
Ga0126379_101786493	3300010366	Tropical Forest Soil	MRTLRIARPARLTLAGGSPAHREVWAGLPQAARRQALALLARMIAKGVLDTGIRGEES*
Ga0126381_1002503182	3300010376	Tropical Forest Soil	MRTLRIAQTTLTGGLSACHREVWAGLPEAARRQALALLARMIAKGVLDTGIRGEES*
Ga0136449_1021734792	3300010379	Peatlands Soil	MSTLRIARPAQLALTGGLPARHREVWAGLPEAARRRALTLLARMIARGVLDTGIRGEGS*
Ga0137392_105249342	3300011269	Vadose Zone Soil	MRTLRIARPAQLALAGGSPAPHREVWAGLPEAARRQALALLARMIARGMLDTGIRGEES*
Ga0137383_111051332	3300012199	Vadose Zone Soil	MRTLRIARPAQLALTGGLPARHREVWAGLPEAARRRAVTLLARMIARGVLDTGIGEVES*
Ga0137365_100567902	3300012201	Vadose Zone Soil	MRTLRIARPTRPALADGSPAPYREVWAGLPEAARRQALALLARMIARGVIDTGIRGEES*
Ga0137365_102513472	3300012201	Vadose Zone Soil	MRTLRIARPAQLALTGGLPARHREVWAGLPEAARRRALTLLARMIARGVLDTGIGGVES*
Ga0137365_104096692	3300012201	Vadose Zone Soil	MRTLRIARPAQLALTGGLPAPHREVWAGLPEAARRRALTLLARMIARGVLDTGIGGEES*
Ga0137365_109686932	3300012201	Vadose Zone Soil	MRTLRIARPAQLALTGGLPARHREVWAGLPEAARGRALTLLARMIARGVLDTGIRGEES*
Ga0137363_100759092	3300012202	Vadose Zone Soil	MRTLRIAGPAQLALTGGLPASYREVWAGLPEAARRRAVTLLARMIARSVLDTGIRGEES*
Ga0137374_107911131	3300012204	Vadose Zone Soil	RPALADGSPAPYREVWAGLPEAARRQALALLARMIARGVIDTGIRGEES*
Ga0137380_100734514	3300012206	Vadose Zone Soil	MRTLRIARPAQLARTGGLPARHREVWAGLPEAARRRALTLLARMIARGVLDTGIGGEES*
Ga0137376_106370751	3300012208	Vadose Zone Soil	MRTLRIARPARLALAGGWAAPHREVWAGLPEAARRQALALLARMIARGVIDTGIRGEES*
Ga0137377_101596171	3300012211	Vadose Zone Soil	MRTLRIARPALAGGSPAPHREVWAGLPEAARRQALALLARMIARGVIDT
Ga0137377_118412941	3300012211	Vadose Zone Soil	ALAGGSPAPHREVWAGLPEAARRQALALLARMIARGVIDTGIRGEES*
Ga0137370_107298922	3300012285	Vadose Zone Soil	MRTLRIARPAQLARAGGMPAPHREVWAGLPEAARRQALALLARMIARGVIDTGIRGEES*
Ga0137387_105044222	3300012349	Vadose Zone Soil	MRTLRIARPALAGGSPAPHREVWAGLPEAARRQALALLARMIAKGMLDTGIRGEES*
Ga0137372_101773153	3300012350	Vadose Zone Soil	MRTLRIARPARPALAGGSPPGPHREVRAGLPEAARRQALALLARMIARGVIDTGIRGEES
Ga0137386_101576432	3300012351	Vadose Zone Soil	MRTLRIARPAQLALTGGLPARHREVWAGLPEAARRRALTLLARMIARGVLDTGIGGEES*
Ga0137371_108731861	3300012356	Vadose Zone Soil	MRTLRIARPTRPALADGSPAPYREVWAGLPEAARRQALALLARMIARGV
Ga0137360_118841421	3300012361	Vadose Zone Soil	MAFTGLPAREVWAGLPEVASRRALTLLARMIARGVIDVGIREEEAGAK
Ga0137361_116573762	3300012362	Vadose Zone Soil	MRTLRIAGPAQLALTGGLPACHREVWAGLPEAARRRALTLLARMIARSVLDTGIRGEES*
Ga0182033_100805144	3300016319	Soil	MRTLRIARPARLALAGGSPAPHREVWAGLPEAARRQALALLARMIARGVLDTGIRGEES
Ga0182039_114029412	3300016422	Soil	MRTLRIAQTTLTSGLPACHREVRAGLPEAARRQALALLARMIAKGVLDTGI
Ga0187812_11067651	3300017821	Freshwater Sediment	IARSAQMAAAGGLPACHREVWAGLPEAARRRALALLARMIAKGVIDTGTPGEES
Ga0187807_10211021	3300017926	Freshwater Sediment	MRTLRIAQPALTRGFPACHREVWAGLPEAARRQALALLARMIARGVLDTGTRGEES
Ga0187807_11260252	3300017926	Freshwater Sediment	MRTLRIARPAQMACTGLPARHRQVWAGLPEAARRRALALLARMIARGVIDTGMPGEES
Ga0187814_101876621	3300017932	Freshwater Sediment	MRTLRIARPAQLALTSGPAPHREVWAGLPEAARRQALALLARMVARGVLDTGTRGAEA
Ga0187814_102055301	3300017932	Freshwater Sediment	TLRIARPAQLALTGGSPAPHREVWAGLPQTARRQALALLARMIARGVLDTGIRGEES
Ga0187776_101526121	3300017966	Tropical Peatland	MRMLRIARPAPLALTGGASARHREVWAGLPEAARWRALTLLAQMIARGVLDTGMWGEES
Ga0066669_112570712	3300018482	Grasslands Soil	ARLALTGGSPPGPHREVWAGLPEAARRQALALLARMIAKGVIDTGIRGEES
Ga0193747_10109222	3300019885	Soil	MRTLRIARPARLALTGGSPPGPHREVWAGLPEAARRQALALLARMIAKGVIDTGIRGEES
Ga0179596_100431052	3300021086	Vadose Zone Soil	MRTLRIARPARLALAGGSPAPHREVWAGLPEAARRQALALLARMIARGMLDTGIRGEES
Ga0126371_103016912	3300021560	Tropical Forest Soil	MRTLRIAQTTLTGGLSACHREVRAGLPEAARRQALALLARMIAKGVLDTGIRGEES
Ga0126371_128148861	3300021560	Tropical Forest Soil	MRTLRIARPARLTLAGGSPAHREVWAGLPQAARRQALALLARMIAKGVLDTGIRGEES
Ga0213851_16035511	3300021860	Watersheds	MRTLRIARPAQLALAGGLPARHREVWAGLPEAARRRALTLLARMIARGVLDTGIGGEES
Ga0207684_101248703	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	MRTLRIARPAQLALTGGLSARHREVWAGLPEAARGRALTLLARMIARGVLDTGIRGEES
Ga0207693_100706432	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	MRTLKIARPARPALAGGSPAPYREVWAGLPEAARRQALALLARMIARGVIDTGIGGEES
Ga0207700_100605482	3300025928	Corn, Switchgrass And Miscanthus Rhizosphere	MRTLRIARPARPGLADGSPSLYREVWAGLPEAARRQALALLARMIARGVIDTGIRGEES
Ga0207700_104374892	3300025928	Corn, Switchgrass And Miscanthus Rhizosphere	MRTLRIARPAQLALTGGLPARHREVWAGVPEDARRRAFTLLARMVARGVVDVGIRGEGS
Ga0209266_10403822	3300026327	Soil	MRTLRIARPALAGGSPAPHREVWAGLPEAARRQALALLARMIARGVIDTGIRGEES
Ga0257173_10507781	3300026360	Soil	MRTLRIAGPAQLALTGGLPACHREVWAGLPEAARRRALTLLARMIARSVLDTGIRGEES
Ga0209056_104837852	3300026538	Soil	RPALAGGSPAPHREVWAGLPEAARRQALALLARMIARGVIDTGIRGEES
Ga0209590_100270652	3300027882	Vadose Zone Soil	MRTLRIARPAQLALTGGLPACHREVWAGLPEAARRRALTLLARMIARGVLDTGIRGEES
Ga0209590_101995802	3300027882	Vadose Zone Soil	MRTLRIARPAQLALAGGSPTPHREVWAGLPEAARRQALALLARMIARGMLDTGIRGEES
Ga0209698_101759204	3300027911	Watersheds	MRTLRIARPAQLALAGGLPARHREVWAGLPEAARRRALTLLARMIARGVLARDLWWD
Ga0209061_10523222	3300027968	Surface Soil	MRTLRIARPAQLALTGGLPAPHDEVWAGLPEVARRRALTLLARMIARGVIGTGIRGEES
Ga0307308_103229052	3300028884	Soil	QLALTGGLPAPHREVWAGLPEAARRRALTLLARMIARGVLDTGIGGEES
Ga0308309_116438902	3300028906	Soil	MRTLRIARSGQMACTGLSARHREVWAGLPETARRRALALLARMIARGVLDTGMPGEES
Ga0318516_103341972	3300031543	Soil	MRTLRIAQTTLTSGLSACHREVWAGLPEAARRQALALLARMIAKGVLDTGIRGEEP
Ga0318534_101948372	3300031544	Soil	LRIAQTTLTSGLSACHREVWAGLPEAARRQALALLARMIAKGVLDTGIRGEEP
Ga0318534_103720202	3300031544	Soil	MRMFRIARAVPLALAGEAPVRHREVWAGLPETARRQALTLLAQMITRGVLDTGIRGEEP
Ga0318534_104260482	3300031544	Soil	MRTLRIAQTTLTSGLSACHREVWAGLPEAARRQALALLARMIAKGVLDTGIRG
Ga0318571_104112221	3300031549	Soil	VRTLRIAQTTLTSGLPACHREVRAGLPEAARRQALALLARMIAKGVLDTGIRGEES
Ga0318528_104581691	3300031561	Soil	MRTLRIAQTTLTSGLPACHREVWAGLPEAARRQALALLARMIAKGVLDTGIRGEES
Ga0318515_102599022	3300031572	Soil	MRTLRIAQTTLTSGLPACHREVWADLPEPARRQALALLARMIAKGVLDTGIRGEES
Ga0318572_103223432	3300031681	Soil	MRTLRIAQTTLTSGLPACHREVWAGLPEAARRQALALLARMIAKGVLDTGIRGEEP
Ga0318572_106939611	3300031681	Soil	ARLTLTGGSPAHREVWAGLPQAARRQALALLARMIAKGVLDTGIRGEES
Ga0318496_103423482	3300031713	Soil	MRTLRIAQTTLTSGLPACHREVRAGLPEAARRQALALLARMIANGVIDTGIRGEES
Ga0318500_106425511	3300031724	Soil	MRTLRIARPAQLALTGGLPACHREVWAGLPEAARRQALALLARMIAKGVLDTGIRGEES
Ga0318502_102405532	3300031747	Soil	MRTLRIAQTTLTSGLSACHREVWAGLPEAARRQALSLLARMIAKGVLDTGIRGEES
Ga0318492_104656032	3300031748	Soil	MRTLRIARPARLALAGGSPAPHREVWAGLPEAARRQALALLARMIAKGVLDTGIRGEES
Ga0318494_104473292	3300031751	Soil	IARAVPLALAGEAPVRHREVWAGLPETARRQALTLLAQMITRGVLDTGIRGEEP
Ga0318554_101026391	3300031765	Soil	IAQTTLTSGLPACHREVRAGLPEAARRQALALLARMIANGVIDTGIRGEES
Ga0318554_102652593	3300031765	Soil	MRTLRIAQTTLTSGLPACHREVWAGLPEAARRQALALLALMIAKGVLDTGIRGEES
Ga0318548_101381142	3300031793	Soil	MRTLRIAQTTLTSGLSACHREVWAGLPEAARRQALALLAAMIARGVIDTGIGGEES
Ga0318576_104915052	3300031796	Soil	IAQTTLTSGLSACHREVWAGLPEAARRQALALLARMIAKGVLDTGIRGEES
Ga0318523_100777482	3300031798	Soil	LRIAQTTLTSGLPACHREVRAGLPEAARRQALALLARMIAKGVLDTGIRGEEP
Ga0310917_100890772	3300031833	Soil	MRTLRIAQTTLTSGLPACHREVRAGLPEAARRQALALLARMIARGVLDTGIRGEES
Ga0318511_103466041	3300031845	Soil	TTLTSGLPACHREVRAGLPEAARRQALALLARMIANGVIDTGIRGEES
Ga0318527_103002472	3300031859	Soil	LRIAQTTLTSGLPACHREVWAGLPEAARRQALALLALMIAKGVLDTGIRGEES
Ga0318544_102143672	3300031880	Soil	RTLRIAQTTLTSGLPACHREVRAGLPEAARRQALALLARMIANGVIDTGIRGEES
Ga0318536_102258811	3300031893	Soil	MRTLRIAQTTLTSGLPACHREVRAGLPEAARRQALALLARMIAKGVLDTGIRGEES
Ga0318520_101471403	3300031897	Soil	MRTLRIAQTTLTSGLSACHREVWAGLPEAARRQALALLARMIAKGVLDTGIRGEES
Ga0306923_113310151	3300031910	Soil	AQTTLTSGLPACHREVWAGLPEAARRQALALLARMIARGVLDTGIRGEES
Ga0306921_118206871	3300031912	Soil	MRTLRIAQTTLTSGLPACHREVWAGLPEAARRQALALLARMIARGVLDTGIRGEES
Ga0306926_106831582	3300031954	Soil	MRTLRIARPARLALAGGSPAPHREVWAGLPEAARRQALALLARMIAKGVLDTGIRGEEP
Ga0307479_114639052	3300031962	Hardwood Forest Soil	MLRIARPAQLALAGGSPALHQEVWAGLPETARRRALALLAKMIARGVLDTGIRGEES
Ga0318505_101118813	3300032060	Soil	MRTLRIAQTTLTSGLPACHREVWAGLPEAARRRALALLARMIARGVLDTGIRGEES
Ga0318553_101787362	3300032068	Soil	AQTTLTSGLSACHREVWAGLPEAARRQALALLARMIAKGVLDTGIRGEEP
Ga0306924_107251471	3300032076	Soil	AMRTLRIAQTTLTSGLSACHREVWAGLPEAARRQALALLARMIAKGVLDTGIRGEES
Ga0318525_103178601	3300032089	Soil	IAQTTLTSGLSACHREVWAGLPEAARRQALALLARMIAKGVLDTGIRGEEP
Ga0318577_103380612	3300032091	Soil	MRTLRIAQTTLTSGLSACHREVWAGLPEAARRQALALLARMIARGVLDTGIRGEES
Ga0318540_102612661	3300032094	Soil	MRTLRIAQTTLTSGLPACHREVRAGLPEAARRQALALLARMIAKGVLDTGIRGEEP
Ga0306920_1008395292	3300032261	Soil	MRTLRIARPARLALAGGSPAPHREVWAGLPEAARRQALALLAAMIARGVIDTGIGGEES
Ga0335080_107745031	3300032828	Soil	MRTLRIAGPAQLAPTGGLPACHREVWAGLPEAARRRALTLLARMIARSVLDTGIRGEGS
Ga0335080_111858712	3300032828	Soil	MRTLRIARPALAGGSPAPHREVWAGLPEAARRQALALLAQMIARGVIDTGIRREES
Ga0335075_112388841	3300032896	Soil	MRMLRIARPDRLALAGGSPALHREVWAGLPETARRRALALLARMIAKGVLDTGIWGEES
Ga0316624_113440461	3300033486	Soil	MRTLRIARPAQLALTGALPARHREVWAGLPEAARRRALTLLARMIARGVLDTGIWGEES

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F073889

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences