Metagenome / Metatranscriptome Family F073839

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

Select file to download:
Download

Overview

Basic Information
Family ID	F073839
Family Type	Metagenome / Metatranscriptome
Number of Sequences	120
Average Sequence Length	65 residues
Representative Sequence	MSDFIQFKTNHGDIWLRPSAVIGVARETTRTTAMRLVDGKVYNVAGSPKDVLDALGASFTSQAA
Number of Associated Samples	62
Number of Associated Scaffolds	120

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	79.17 %
% of genes near scaffold ends (potentially truncated)	26.67 %
% of genes from short scaffolds (< 2000 bps)	95.83 %
Associated GOLD sequencing projects	55
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.60

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign

Most Common Taxonomy
Group	Bacteria (59.167 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil (31.667 % of family members)
Environment Ontology (ENVO)	Unclassified (58.333 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (76.667 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Select alignment to view:

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 11.96% β-sheet: 29.35% Coil/Unstructured: 58.70%
Feature Viewer

Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.60
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.60
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 120 Family Scaffolds
PF01165	Ribosomal_S21	5.00
PF00076	RRM_1	3.33
PF03405	FA_desaturase_2	2.50
PF08327	AHSA1	1.67
PF00202	Aminotran_3	0.83
PF00733	Asn_synthase	0.83
PF13489	Methyltransf_23	0.83
PF13649	Methyltransf_25	0.83
PF03633	Glyco_hydro_65C	0.83
PF01169	UPF0016	0.83

COG ID	Name	Functional Category	% Frequency in 120 Family Scaffolds
COG0828	Ribosomal protein S21	Translation, ribosomal structure and biogenesis [J]	5.00
COG1554	Phosphatase/phosphodiesterase/kojibiose phosphorylase YcjT/PafA/Npp1, AlkP superfamily	Carbohydrate transport and metabolism [G]	0.83
COG2119	Putative Ca2+/H+ antiporter, TMEM165/GDT1 family	General function prediction only [R]	0.83

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	59.17 %
Unclassified	root	N/A	40.83 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	59.17 %
Unclassified	root	N/A	40.83 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	59.17 %
Unclassified	root	N/A	40.83 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	46.67 %
Unclassified	root	N/A	40.83 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.83 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	0.83 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.83 %

Name	Rank	Taxonomy	Distribution
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	45.83 %
Unclassified	root	N/A	40.83 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	0.83 %
Planctomycetes	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes	0.83 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.83 %

Name	Rank	Taxonomy	Distribution
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	45.83 %
Unclassified	root	N/A	40.83 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.83 %
Planctomycetia	class	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia	0.83 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.83 %

Name	Rank	Taxonomy	Distribution
unclassified Deltaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria	45.83 %
Unclassified	root	N/A	40.83 %
Pirellulales	order	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Pirellulales	0.83 %
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	0.83 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.83 %

Name	Rank	Taxonomy	Distribution
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	45.83 %
Unclassified	root	N/A	40.83 %
Pirellulaceae	family	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Pirellulales → Pirellulaceae	0.83 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	0.83 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.83 %

Name	Rank	Taxonomy	Distribution
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	45.83 %
Unclassified	root	N/A	40.83 %
Rhodopirellula	genus	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Pirellulales → Pirellulaceae → Rhodopirellula	0.83 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	0.83 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.83 %

Name	Rank	Taxonomy	Distribution
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	45.83 %
Unclassified	root	N/A	40.83 %
Rhodopirellula pilleata	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Pirellulales → Pirellulaceae → Rhodopirellula → Rhodopirellula pilleata	0.83 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	0.83 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.83 %

Visualization

Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2170459013\|GO6OHWN02G4RNN	Not Available	509	Open in IMG/M
2189573000\|GPBTN7E02JREPL	Not Available	537	Open in IMG/M
3300000550\|F24TB_10187482	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1335	Open in IMG/M
3300001431\|F14TB_100337957	Not Available	508	Open in IMG/M
3300001431\|F14TB_100484815	Not Available	748	Open in IMG/M
3300001431\|F14TB_101833781	Not Available	678	Open in IMG/M
3300004463\|Ga0063356_104099235	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Pirellulales → Pirellulaceae → Rhodopirellula → Rhodopirellula pilleata	627	Open in IMG/M
3300005331\|Ga0070670_101059602	All Organisms → cellular organisms → Bacteria	738	Open in IMG/M
3300005332\|Ga0066388_100571176	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1758	Open in IMG/M
3300005332\|Ga0066388_100671988	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1647	Open in IMG/M
3300005332\|Ga0066388_100829124	Not Available	1513	Open in IMG/M
3300005332\|Ga0066388_100879341	All Organisms → cellular organisms → Bacteria	1477	Open in IMG/M
3300005332\|Ga0066388_100940212	All Organisms → cellular organisms → Bacteria	1437	Open in IMG/M
3300005332\|Ga0066388_101079172	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1356	Open in IMG/M
3300005332\|Ga0066388_101241888	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1278	Open in IMG/M
3300005332\|Ga0066388_101559584	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1159	Open in IMG/M
3300005332\|Ga0066388_101851105	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1075	Open in IMG/M
3300005332\|Ga0066388_102122801	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1011	Open in IMG/M
3300005332\|Ga0066388_102837647	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	885	Open in IMG/M
3300005332\|Ga0066388_104650498	Not Available	698	Open in IMG/M
3300005332\|Ga0066388_106100845	Not Available	608	Open in IMG/M
3300005332\|Ga0066388_106200067	Not Available	603	Open in IMG/M
3300005363\|Ga0008090_10095425	Not Available	779	Open in IMG/M
3300005363\|Ga0008090_14349656	Not Available	537	Open in IMG/M
3300005367\|Ga0070667_100713920	All Organisms → cellular organisms → Bacteria	928	Open in IMG/M
3300005439\|Ga0070711_100138954	All Organisms → cellular organisms → Bacteria	1819	Open in IMG/M
3300005471\|Ga0070698_102074026	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	522	Open in IMG/M
3300005713\|Ga0066905_100057835	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	2418	Open in IMG/M
3300005713\|Ga0066905_100200888	All Organisms → cellular organisms → Bacteria	1490	Open in IMG/M
3300005713\|Ga0066905_100529503	Not Available	985	Open in IMG/M
3300005713\|Ga0066905_100902122	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	773	Open in IMG/M
3300005713\|Ga0066905_101104073	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	704	Open in IMG/M
3300005713\|Ga0066905_101540742	Not Available	606	Open in IMG/M
3300005713\|Ga0066905_101658012	Not Available	586	Open in IMG/M
3300005713\|Ga0066905_102083895	Not Available	527	Open in IMG/M
3300005764\|Ga0066903_100264665	All Organisms → cellular organisms → Bacteria	2673	Open in IMG/M
3300005764\|Ga0066903_100335347	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	2429	Open in IMG/M
3300005764\|Ga0066903_100551915	Not Available	1976	Open in IMG/M
3300005764\|Ga0066903_100635251	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1862	Open in IMG/M
3300005764\|Ga0066903_102204412	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1062	Open in IMG/M
3300005764\|Ga0066903_102615420	Not Available	978	Open in IMG/M
3300005764\|Ga0066903_103001429	All Organisms → cellular organisms → Bacteria	914	Open in IMG/M
3300005764\|Ga0066903_103251262	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	878	Open in IMG/M
3300005764\|Ga0066903_103444139	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	853	Open in IMG/M
3300005764\|Ga0066903_104642762	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	731	Open in IMG/M
3300005764\|Ga0066903_105803152	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	648	Open in IMG/M
3300005764\|Ga0066903_105965505	Not Available	638	Open in IMG/M
3300005764\|Ga0066903_106965105	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	586	Open in IMG/M
3300005764\|Ga0066903_107142327	Not Available	578	Open in IMG/M
3300005764\|Ga0066903_108419397	Not Available	526	Open in IMG/M
3300006175\|Ga0070712_101391919	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	612	Open in IMG/M
3300009792\|Ga0126374_10212542	Not Available	1233	Open in IMG/M
3300009792\|Ga0126374_10386144	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	973	Open in IMG/M
3300009792\|Ga0126374_10547593	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	844	Open in IMG/M
3300010043\|Ga0126380_10461279	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	963	Open in IMG/M
3300010043\|Ga0126380_10766081	All Organisms → cellular organisms → Bacteria	785	Open in IMG/M
3300010043\|Ga0126380_10781808	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	778	Open in IMG/M
3300010046\|Ga0126384_10787331	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	850	Open in IMG/M
3300010047\|Ga0126382_10307856	Not Available	1193	Open in IMG/M
3300010047\|Ga0126382_11262539	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	665	Open in IMG/M
3300010358\|Ga0126370_12566499	Not Available	509	Open in IMG/M
3300010359\|Ga0126376_10077031	Not Available	2463	Open in IMG/M
3300010359\|Ga0126376_10435158	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1193	Open in IMG/M
3300010360\|Ga0126372_12328477	Not Available	586	Open in IMG/M
3300010361\|Ga0126378_10648169	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1169	Open in IMG/M
3300010361\|Ga0126378_11636430	Not Available	731	Open in IMG/M
3300010362\|Ga0126377_13399785	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	515	Open in IMG/M
3300010366\|Ga0126379_10542867	Not Available	1241	Open in IMG/M
3300010366\|Ga0126379_11113126	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	896	Open in IMG/M
3300010366\|Ga0126379_11669544	Not Available	742	Open in IMG/M
3300010366\|Ga0126379_11904848	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	698	Open in IMG/M
3300010376\|Ga0126381_100615013	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1547	Open in IMG/M
3300010376\|Ga0126381_101160330	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1116	Open in IMG/M
3300010376\|Ga0126381_102041454	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	826	Open in IMG/M
3300010398\|Ga0126383_10603253	All Organisms → cellular organisms → Bacteria	1169	Open in IMG/M
3300010398\|Ga0126383_11745595	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	711	Open in IMG/M
3300010398\|Ga0126383_12373537	Not Available	616	Open in IMG/M
3300010398\|Ga0126383_12746909	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	575	Open in IMG/M
3300010863\|Ga0124850_1090231	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	889	Open in IMG/M
3300012948\|Ga0126375_11182521	Not Available	635	Open in IMG/M
3300012948\|Ga0126375_11623549	Not Available	558	Open in IMG/M
3300012971\|Ga0126369_10885245	Not Available	978	Open in IMG/M
3300015371\|Ga0132258_10464814	All Organisms → cellular organisms → Bacteria	3157	Open in IMG/M
3300015373\|Ga0132257_102091712	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	731	Open in IMG/M
3300015374\|Ga0132255_102203053	All Organisms → cellular organisms → Bacteria	840	Open in IMG/M
3300016270\|Ga0182036_11843764	Not Available	512	Open in IMG/M
3300016341\|Ga0182035_11788684	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	556	Open in IMG/M
3300016357\|Ga0182032_10135383	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1801	Open in IMG/M
3300016371\|Ga0182034_11910984	Not Available	524	Open in IMG/M
3300016387\|Ga0182040_11312039	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	611	Open in IMG/M
3300016422\|Ga0182039_10580428	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	978	Open in IMG/M
3300016445\|Ga0182038_11252423	Not Available	662	Open in IMG/M
3300017966\|Ga0187776_10862497	Not Available	655	Open in IMG/M
3300017974\|Ga0187777_10416103	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	931	Open in IMG/M
3300031057\|Ga0170834_112406253	Not Available	515	Open in IMG/M
3300031231\|Ga0170824_104762636	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	988	Open in IMG/M
3300031231\|Ga0170824_105494245	Not Available	666	Open in IMG/M
3300031446\|Ga0170820_12016537	Not Available	627	Open in IMG/M
3300031474\|Ga0170818_105733114	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	884	Open in IMG/M
3300031543\|Ga0318516_10670547	Not Available	590	Open in IMG/M
3300031544\|Ga0318534_10070997	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1971	Open in IMG/M
3300031751\|Ga0318494_10957109	Not Available	503	Open in IMG/M
3300031770\|Ga0318521_10228794	Not Available	1081	Open in IMG/M
3300031792\|Ga0318529_10381849	Not Available	656	Open in IMG/M
3300031797\|Ga0318550_10165671	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1065	Open in IMG/M
3300031797\|Ga0318550_10213025	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	936	Open in IMG/M
3300031890\|Ga0306925_10426685	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1419	Open in IMG/M
3300031894\|Ga0318522_10398319	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	522	Open in IMG/M
3300031912\|Ga0306921_10998284	Not Available	944	Open in IMG/M
3300031912\|Ga0306921_11565448	Not Available	718	Open in IMG/M
3300031912\|Ga0306921_12465318	Not Available	541	Open in IMG/M
3300031946\|Ga0310910_10253262	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1378	Open in IMG/M
3300031954\|Ga0306926_11216823	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	884	Open in IMG/M
3300031954\|Ga0306926_12843273	Not Available	522	Open in IMG/M
3300032010\|Ga0318569_10541289	Not Available	542	Open in IMG/M
3300032025\|Ga0318507_10032304	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1962	Open in IMG/M
3300032035\|Ga0310911_10124541	All Organisms → cellular organisms → Bacteria → Proteobacteria	1434	Open in IMG/M
3300032039\|Ga0318559_10345131	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	693	Open in IMG/M
3300032066\|Ga0318514_10774547	Not Available	510	Open in IMG/M
3300032076\|Ga0306924_11150773	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	843	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	95.00%
Host-Associated	Host-Associated	5.00%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	95.00%
Plants	Host-Associated → Plants	5.00%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	95.00%
Rhizoplane	Host-Associated → Plants → Rhizoplane	3.33%
Rhizosphere	Host-Associated → Plants → Rhizosphere	1.67%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	55.83%
Loam	Environmental → Terrestrial → Soil → Loam	37.50%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	2.50%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	1.67%
Soil	Host-Associated → Plants → Rhizosphere → Soil	1.67%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	0.83%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	31.67%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	27.50%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	25.00%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	3.33%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	2.50%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	2.50%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	1.67%
Tropical Rainforest	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest	1.67%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	1.67%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	1.67%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	0.83%

Habitat	Taxonomy	Distribution
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	31.67%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	25.00%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	11.67%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	11.67%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	4.17%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	3.33%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	2.50%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	2.50%
Grass Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grass Soil	1.67%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	1.67%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	1.67%
Tropical Rainforest Soil	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest → Tropical Rainforest Soil	1.67%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	0.83%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2170459013	Grass soil microbial communities from Rothamsted Park, UK - July 2010 direct MP BIO 1O1 lysis soil at the rocks surface 0-21cm	Environmental	Open in IMG/M
2189573000	Grass soil microbial communities from Rothamsted Park, UK - July 2010 direct MP BIO 1O1 lysis 0-21cm (T0 for microcosms)	Environmental	Open in IMG/M
3300000550	Amended soil microbial communities from Kansas Great Prairies, USA - BrdU amended with acetate total DNA F2.4 TB clc assemly	Environmental	Open in IMG/M
3300001431	Amended soil microbial communities from Kansas Great Prairies, USA - BrdU F1.4TB clc assemly	Environmental	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300005331	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG	Host-Associated	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005363	Tropical rainforest soil microbial communities from the Amazon Forest, Brazil, analyzing deforestation - Metatranscriptome F II A100 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300005367	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG	Host-Associated	Open in IMG/M
3300005439	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG	Environmental	Open in IMG/M
3300005471	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG	Environmental	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300009792	Tropical forest soil microbial communities from Panama - MetaG Plot_12	Environmental	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300010863	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (PacBio error correction)	Environmental	Open in IMG/M
3300012948	Tropical forest soil microbial communities from Panama - MetaG Plot_14	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300016270	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080	Environmental	Open in IMG/M
3300016341	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170	Environmental	Open in IMG/M
3300016357	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000	Environmental	Open in IMG/M
3300016371	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172	Environmental	Open in IMG/M
3300016387	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176	Environmental	Open in IMG/M
3300016422	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111	Environmental	Open in IMG/M
3300016445	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108	Environmental	Open in IMG/M
3300017966	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP12_20_MG	Environmental	Open in IMG/M
3300017974	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP5_10_MG	Environmental	Open in IMG/M
3300031057	Oak Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031446	Fir Summer Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031474	Fir Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031543	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f20	Environmental	Open in IMG/M
3300031544	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f26	Environmental	Open in IMG/M
3300031751	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f24	Environmental	Open in IMG/M
3300031770	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f17	Environmental	Open in IMG/M
3300031792	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f23	Environmental	Open in IMG/M
3300031797	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f23	Environmental	Open in IMG/M
3300031890	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)	Environmental	Open in IMG/M
3300031894	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f18	Environmental	Open in IMG/M
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental	Open in IMG/M
3300031946	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF172	Environmental	Open in IMG/M
3300031954	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)	Environmental	Open in IMG/M
3300032010	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f22	Environmental	Open in IMG/M
3300032025	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f20	Environmental	Open in IMG/M
3300032035	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF170	Environmental	Open in IMG/M
3300032039	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f21	Environmental	Open in IMG/M
3300032066	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f18	Environmental	Open in IMG/M
3300032076	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)	Environmental	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
N57_07657550	2170459013	Grass Soil	MSDFIQFKTNHGDIWLRPSSVIGIARETTRTTAMRLVDGKVYNVSGSPKDVFNALGASFSSEAA
N55_02010750	2189573000	Grass Soil	MSDFIQFKTNHGDIWLRPSAVIGVARETTRTTAMRLVDGKVYNVAGSPKDVLDALGATFTSQAA
F24TB_101874821	3300000550	Soil	RPTMSDFIQFKTNHGEIWLRPSAVIGVARETPRTTAMRLVDGKVYNVAGSPKDVLDALGASCSSQAA*
F14TB_1003379571	3300001431	Soil	RAANRAAERRPTMSDFIQFKTNHGDIWLRPSAVIGVARETTHTTAMRLVDGKVYNVAGSPKDVLDALGASCSSQAA*
F14TB_1004848151	3300001431	Soil	IQFKTNHGDIWLRPSAVIGVARETTRTSAMRLVDGKVYNVAGSPKDVLDALGASFTSQAA
F14TB_1018337811	3300001431	Soil	IQFKTNHGDIWLRPSAVIGVARETTRTTAMRLVDGKVYNVAGSPKDVLDVLGATVTSRAT
Ga0063356_1040992351	3300004463	Arabidopsis Thaliana Rhizosphere	MSDFIQFKTSHGDVWLRPSAVIGVARETARTSTMRLVDGKVYDVPGSPKDVLDALGASFTSQAA*
Ga0070670_1010596021	3300005331	Switchgrass Rhizosphere	IWLRPSAVIGVARETAHTSAMRLADGKVYNVVGSPKDVLDALGASFTSQAA*
Ga0066388_1005711764	3300005332	Tropical Forest Soil	MSDFIQFKTTHGDIWLRPSAVIGVTQETTRISAMRLVDGKVYYVTGSPKDVLDTLGASFTSRTV*
Ga0066388_1006719885	3300005332	Tropical Forest Soil	MSDFIQFKTNDGDIWLRPSAIIGVARETTQTTAMRLVDGKVYNVAGSPKDVLDALGASFSSEAA*
Ga0066388_1008291241	3300005332	Tropical Forest Soil	MSDFIQFKTNQGDIWLRPSAIIGVARETTRTTAMRLVDGKVYNVAGSPKDVLDVLGATF
Ga0066388_1008793413	3300005332	Tropical Forest Soil	MSDFIQFKTNHGDIWLRPSAIIGVARETAHTTAMRLVDGKVYNVAGSPKDVLDALGASFSSQAA*
Ga0066388_1009402121	3300005332	Tropical Forest Soil	MSDFIQFKTNDGNIWLRPSAVIGIARETTQTSAIRLVDGKVYNVAGSPEDVLDALGASFTSHAA*
Ga0066388_1010791722	3300005332	Tropical Forest Soil	MSDFIQFKTNHGDIWLRPSAVIGVARQTTHTTAMRLVDGKVYNVAGSPKDVLAALGASFSSEAA*
Ga0066388_1012418882	3300005332	Tropical Forest Soil	MSDFIRFKTDHGDVWLRPSAIIGVARETSHTTAMRLVDGKVYHVAGSPKDVLDALGASFSSQAA*
Ga0066388_1015595842	3300005332	Tropical Forest Soil	MSDFIQFKTNHGDIWLRPSAVIGVARQTTHTTAMRLVDGKVYNVPGSPKDVLAALGASFSSEAAL*
Ga0066388_1018511052	3300005332	Tropical Forest Soil	MSDFIQFKTNHGDIWLRPSAIIGVARETTHTTAMRPVDGKVYHVAGSPKDVFDALGASVSSQAA*
Ga0066388_1021228012	3300005332	Tropical Forest Soil	MSDFIQFKTNHGDIWLRPSAVIGVARESASSTAMRLVDGKVYNVAGSPKDVLDALGATFSSQAA*
Ga0066388_1028376472	3300005332	Tropical Forest Soil	MSDFIQFKTDHGDIWLRPSAIIGVARETTHTTAMRLVDGKVYHVAGSPKDVLDALGASVGSQAA*
Ga0066388_1046504981	3300005332	Tropical Forest Soil	MSDFIHFKTTHGDIWLRPSAVIGVARETTRTTAMRLVDGKVYNIAGSPQEVLDVLGATFTSKVT*
Ga0066388_1061008451	3300005332	Tropical Forest Soil	MSDFIQFKTNHGDIWLRPSAIIGVARQTTHTTAMRLVDGKVYNVAGSPKDVLAALGASFSSE
Ga0066388_1062000672	3300005332	Tropical Forest Soil	ANRAAERRPTMSDFIQFKTNHGDIWLRPSAVIGVSRETTRTSAMRLVDGKVYNVAGSPKDVLDALGASFTSQAA*
Ga0008090_100954252	3300005363	Tropical Rainforest Soil	MSDFIQFKTNHGDIWLRPSAVIGVAQEATHPTAMRLVDGKVYNVAGSPKDVLDVLGATFTSKVT*
Ga0008090_143496561	3300005363	Tropical Rainforest Soil	MSDFIQFKTNHGDIWLRPSAVIGGARETPSSTAMRLVDGKVYNVAGSPKDVLDALGASFSSQAA*
Ga0070667_1007139202	3300005367	Switchgrass Rhizosphere	MSDFIQFKTSQGNIWLRPSAVIGVARETAHTSAMRLADGKVYNVVGSPKDVLDALGASFTSQAA*
Ga0070711_1001389541	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	MSDFMQFKTNHGDVWLRPSAVIGVAQQTTRTTAMRLVDGKVYNVAGSPKDVLDALGASFTSQAA*
Ga0070698_1020740261	3300005471	Corn, Switchgrass And Miscanthus Rhizosphere	MSDFMQFKTNHGDVWLRPSAVIGVARETTRTSALRLVDGKVYNVAGSPKDVLDALGASFTSQAA*
Ga0066905_1000578353	3300005713	Tropical Forest Soil	MSDFIKFKTNDGDIWLRPSAIIGVARETTHTTAMRLVDGKVYRVAGSPKDVLDALGASFSSQAA*
Ga0066905_1002008884	3300005713	Tropical Forest Soil	MSDFIQFKTNHGDIWLRPSAVIGVARQTTSTAAMRLVDGKVYNVAGSPKDVLA
Ga0066905_1005295031	3300005713	Tropical Forest Soil	MSDFIQFKTNQGDIWLRPSAIIGVARETTRTTAMRLVDGKVYNVAGSPKDVLDVLGATFT
Ga0066905_1009021221	3300005713	Tropical Forest Soil	DFIQFKTNHGDIWLRPSAVIGVARETASSTAMRLVDGKVYNVAGSPKDVLDALGASFSSQAA*
Ga0066905_1011040731	3300005713	Tropical Forest Soil	RAVRKPMANRAAERRPTMSDFIQFKTNDGDIWLRPSAIIGVARETTHTTAMRLVDGKVYTVAGSPKDVLEALGASFSSQAA*
Ga0066905_1015407421	3300005713	Tropical Forest Soil	MSDFIQFKTNHGDIWLRPSAVIGVARETTRTSAMRLVDGKVYNIAGSPQEVLDVLGATFTSKVT*
Ga0066905_1016580122	3300005713	Tropical Forest Soil	MSDFIQFKTNQGAIWLRPSAIIGVARETTSTTAMRLVDGKVYSVAGSPKDVLEALGASNSSQTA*
Ga0066905_1020838951	3300005713	Tropical Forest Soil	MSDFIQFKTNHGDIWLRPSAIIGVARETTHTTAMRLVDGKVYYVAGSPKDVLDALGASVSS*
Ga0066903_1002646653	3300005764	Tropical Forest Soil	MSDFIQFKTNHGDIWLRPSAVIGVARQTTHTTAMRLVDGKVYNVTGSPKDVLAALGASFSSEAA*
Ga0066903_1003353474	3300005764	Tropical Forest Soil	MSDFIQFKTNDGDIWLRPSAIIGVARETTHTTAMRLVDGKVYKVAGSPKDVLDALGASFSSQAA*
Ga0066903_1005519155	3300005764	Tropical Forest Soil	MSDFIQFKTNDGDIWLRPSAVIGVARQTTHMTAMRLVDGKVYNVAGSPKDVLAALGASFSSEVA*
Ga0066903_1006352513	3300005764	Tropical Forest Soil	MSDFIQFKTNHGDIWLRPSAVIGVARETTRTTAMRLVDGKVYNVAGSPKDVLDALGASFGSQAA*
Ga0066903_1022044121	3300005764	Tropical Forest Soil	MSDFIQFKTNQGDIWLRPSAVIGVARETTSTTAMRLVDGKVYTVAGAPKDVLAALGASFSSEVA*
Ga0066903_1026154202	3300005764	Tropical Forest Soil	MSDFIQFRTNHGDIWLRPSAVIGVARETPGSTAMRLVDGKVYNVAGSPKDILDALGASFRSQAA*
Ga0066903_1030014291	3300005764	Tropical Forest Soil	TNQGDIWLRPSAIIGVARETTRTTAMRLVDGKVYNVAGSPQEVLDVLGATFTSKVT*
Ga0066903_1032512622	3300005764	Tropical Forest Soil	MSDFIQFKTNHGDIWLRPSAIIGVARETTHTTAMRLVDGKVYYVAGSPKDVFDALGPSVSSKAA*
Ga0066903_1034441391	3300005764	Tropical Forest Soil	RVANRAAERRPTMSDFIQFKTNHGDIWLRPSAIIGVATETTHTTAMRLVDGKVYYVAGSPKDVFEALSASVSPKAA*
Ga0066903_1046427623	3300005764	Tropical Forest Soil	MSDFIQFKTNDGDIWLRPSAVIGVARETTSTTAMRLVDGKVYNVAGVPKDVLDALGASFSSQAT*
Ga0066903_1058031522	3300005764	Tropical Forest Soil	MSDFIQFKTNHGDIWLRPSAIIGVARETASTTAMRLVDGKVYNVAGSPKDVLDALGASFSSQAA*
Ga0066903_1059655052	3300005764	Tropical Forest Soil	LSDFIQFKTNDGDIWLRPSAIIGVARETTSTTAMRLVDGKVYNVAGSPKDVLDALGASVSPQAA*
Ga0066903_1069651052	3300005764	Tropical Forest Soil	MSDFIQFKTNHGDIWLRPSAVIGVARETASSTAMRLVDGKVYNVAGSPKDILDALGASVSSQAA*
Ga0066903_1071423272	3300005764	Tropical Forest Soil	MSDFIQFKTNHGDIWLRPSAVIGVARETPSSTAMRLVDGKVYNVAGSPKDILDALGASFSSQAA*
Ga0066903_1084193972	3300005764	Tropical Forest Soil	MSDFIQFKTNHGDIWLRPSAVIGVARETASSTAMRLVDGKVYNVAGSPKDVLDALGASVSSQAA*
Ga0070712_1013919192	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	MSDFIQFKTNHGDIWLRPSAVIGVARETTRTSAMRLVDGKVYNVAGSPKDVLDALGASFTSQAA*
Ga0126374_102125423	3300009792	Tropical Forest Soil	MSDFIQFKTNQGDIWLRPSAIIGVARETTRTTAMRLVDGKVYTVAGSPKDVLEALGASFSSQAA*
Ga0126374_103861444	3300009792	Tropical Forest Soil	MSDFIQFKTNHGDIWLRPSAVIGIARETASSTAMRLVDGKVYNVAGSPKDILDALGASVSSQAA*
Ga0126374_105475931	3300009792	Tropical Forest Soil	HGDIWLRPSAVIGVTQETTRISAMRLVDGKVYYVTGSPKDVLDTLGASFTSRAV*
Ga0126380_104612791	3300010043	Tropical Forest Soil	NRAAERRPTMSDFIQFKTDHGDIWLRPSAIIGVARETTHTTAMRLVDGKVYHVAGSPKDVLDALGASVSSQAA*
Ga0126380_107660812	3300010043	Tropical Forest Soil	MSDFIQFKTNDGDIWLRPSAIIGVARETTQTTAMRLVDGKVYNVAGSPKDVL
Ga0126380_107818082	3300010043	Tropical Forest Soil	MSDFIQFKTNHGDIWLRPSAVIGVARETASSTAMRLVDGKVYNVAGSPKDVLDALGASFSSQAA*
Ga0126384_107873311	3300010046	Tropical Forest Soil	MSDFIQFKTNHGDIWLRPSAIIGVARETTHTTAMRLVDGKVYNVPGSPKDVLAALGASFSSEAA*
Ga0126382_103078562	3300010047	Tropical Forest Soil	MSDFIQFKTNQGDIWLRPSAIIGVARETTRTTAMRLVDGKVYNVAGSPKDVLDVLGATFTSKVT*
Ga0126382_112625391	3300010047	Tropical Forest Soil	MSDFIQFKTNDGDIWLRPSAIIGVARETTQTTAMRLVDGKAYNVAGSPKDVLDALGASFSSEAA*
Ga0126370_125664991	3300010358	Tropical Forest Soil	MSDFIQFKTNHGDIWLRPSAVIGVARQTTHTTAMRLVDGKVYKVAGSPKDVLAALGASFSSEAAL*
Ga0126376_100770314	3300010359	Tropical Forest Soil	MSDFIQFKTNHGDIWLRPSAVIGVARETTRTTAMRLVDGKVYNIAGSPQEVLDVLGATFTSKVT*
Ga0126376_104351584	3300010359	Tropical Forest Soil	RRAVRKRAANRAAERRPTMSDFIQFKTDHGDIWLRPSAIIGVARETTHTTAMRLVDGKVYHIAGSPKDVLDALGASVSSQAA*
Ga0126372_123284771	3300010360	Tropical Forest Soil	MSDFIQVKTTHGDIWLRPSAIIGVARETTHTTAMRLVDGKVYKVAGSPKDVLAALGASFSSEAG*
Ga0126378_106481694	3300010361	Tropical Forest Soil	MSDFIQFKTNHGDIWLRPSAIIGVARETTHTTAMRLADGQVYHVAGSPKDVLDALGASVSSQAA*
Ga0126378_116364302	3300010361	Tropical Forest Soil	MMSDFIQFKTNHGDIWLRPSAVIGVARETASSTAMRLVDGKVYNVAGSPKDVLDALGASFSSQAA*
Ga0126377_133997853	3300010362	Tropical Forest Soil	DIWLRPSAIIGVARETTHTTAMRLVDGKVYHIAGSPKDVLDALGASVGSQAA*
Ga0126379_105428672	3300010366	Tropical Forest Soil	MRKRVANRAAERRLTMSDFIQFKTNHGDVWLRPSAVIGVAQQTTRTTAMRLVDGKVYNVAGSPKDVLDVLGATFTSKVT*
Ga0126379_111131261	3300010366	Tropical Forest Soil	MSDFIQFKTNHGDIWLRPSAVIGVARETASSTAMRLVDGKVYNVAGSPKDILDALGASFSSQAA*
Ga0126379_116695443	3300010366	Tropical Forest Soil	MSDFIQFKTNDGDIWLRPSAIIGVARETTQTTAMRLVDGKVYNVAGSPKDVLDALG
Ga0126379_119048482	3300010366	Tropical Forest Soil	MSDFIRFKTDHGDVWLRPSAIIGVARETSHTTAMRLVDGKVYHVAGSPKDVLDALGASVSSQAA*
Ga0126381_1006150132	3300010376	Tropical Forest Soil	MSDFIQFKTNHGDIWVRPSTIIGVARETAHTTTMRLVDGKVYYVAGSPKDVFDALGASVSSEAA*
Ga0126381_1011603302	3300010376	Tropical Forest Soil	MSDFIEFKTNHGDIWLRPSAVIGVAQETTHPTAMRLVDGKVYNVAGSPRDVLDVLGATCTSKAI*
Ga0126381_1020414541	3300010376	Tropical Forest Soil	MSDFIQFRTNHGDIWLRPSAVIGVARETRGSTAMRLVDGKVYNVAGSPKDVLDALGASFSSQAA*
Ga0126383_106032531	3300010398	Tropical Forest Soil	MSDFIQFKTNHGDIWLRPCAVIGVARQTAHTTAMRLVDGKVYNVAGSPKDVLAALGASFSSEAA*
Ga0126383_117455951	3300010398	Tropical Forest Soil	GDIWLRPSAVIGVARQTTHTTAMRLVDGKVYNVPGSPKDVLDALGASFSSEAT*
Ga0126383_123735371	3300010398	Tropical Forest Soil	MSDFIQFKTNHGDIWLRPSAVIGVARETTSTTAMRLVDGKVYNVAGAPKDVL
Ga0126383_127469092	3300010398	Tropical Forest Soil	MSDFIQFKTNHGDIWLRPSAIIGVARETASSTAMRLVDGKVYNVAGSPKDVLDALGASFSSQAA*
Ga0124850_10902311	3300010863	Tropical Forest Soil	MSDSIQFKTNHRDVWLRPSAVIGVARKTPGSTAMRLVDGKVYNIAESPKDILDALGASFSSQAA*
Ga0126375_111825211	3300012948	Tropical Forest Soil	MSDFIQFKTNHGDIWLRPSAVIGVARETTLTTAMRLVDGKVYNVAGSPKDVLDALGASFTSNAAGCFRALCRPQI*
Ga0126375_116235491	3300012948	Tropical Forest Soil	MSDFIQFKTDHGDIWLRPSAIIGVARETTHTTAMRLVDGKVYHVAGSPKDVLDALGASVSSEAA*
Ga0126369_108852452	3300012971	Tropical Forest Soil	MSDFIQFKTNHGDVWLRPSAVIGVAQQTTRTTAMRLVDGKVYNVAGSPTDVLDVLGATFTSKAT*
Ga0132258_104648147	3300015371	Arabidopsis Rhizosphere	MNNRAANRAAERKPTMSDFIHFKTTNGDIWLRPSAVIGVARETTRTTAMRLVDGKVYNVAGSPKDVLDALGASFTSNAA*
Ga0132257_1020917121	3300015373	Arabidopsis Rhizosphere	MNNRAANRAAERKPTMSDFIHFKTTNGDIWLRPSAVIGVARETAHTSAMRLADGKVYNVVGSPKDVLDALGASFTSQAA*
Ga0132255_1022030532	3300015374	Arabidopsis Rhizosphere	MSDFIQFKTSQGNIWLPPSAVIGVARETAHTSAMRLADGKVYNVVGSPKDVLDALGASFTSQAA*
Ga0182036_118437641	3300016270	Soil	MSDFIQFKTNHGDIWLRPSAVIGVARETASSTAMRLVDGKVYNVAGSPKDILDALGASFSPQAA
Ga0182035_117886841	3300016341	Soil	MSDFILFKTNHGDIWLRPSAIIGVARETAHTTAMRLVDGKVYYVAGSPKDVFDALGASVSSEAA
Ga0182032_101353832	3300016357	Soil	MSDFIQFKTNHGDIWLRPSAVIGVARETASSTAMRLVDGKVYNVAGSPKDILDALSASFSSQAA
Ga0182034_119109842	3300016371	Soil	MSDFIQFKTSDGDIWLRPSAIIGVARETTHTTAMRLVDGKVYNVAGSPTDVLDALGASFSAQAA
Ga0182040_113120392	3300016387	Soil	MSDFIQFKTNHGDIWLRPSAVIGVARETASSTAMRLVDGKVYNVAGSPKDILDALGARFSAQSA
Ga0182039_105804283	3300016422	Soil	GDIWLRPSAVIGVARETASSTAMRLVDGKVYNVAGSPKDILDALGASFSSQAA
Ga0182038_112524232	3300016445	Soil	MSDFIQFKTNHGDIWLRPSAVIGVARETASSTAMRLVDGKVYNVAGSPKDVLDALGASVSSQAA
Ga0187776_108624972	3300017966	Tropical Peatland	MSDFIQFKTNHGDIWLRPSAVIGVARQTTSTTAMRLVDGKVYNVAGSPKDVLAALGA
Ga0187777_104161031	3300017974	Tropical Peatland	MSDFIQFKTNHGDVWLRPSAIIGVARETPHTTAMRLVDGKVYNVAGSPKDVLDALGASFSSQAA
Ga0170834_1124062531	3300031057	Forest Soil	MTDFIQFKTNQGDIWLRPSAVIGIARETTRTTAMRLVDGKVYNVSGSPKDVFNALGASFSSEAA
Ga0170824_1047626361	3300031231	Forest Soil	MSDFIQFKTNHGDIWLRPSAVIGVARETTRTSAIRLVDGKVYNVAGSPKDVLDALGASFTSQAA
Ga0170824_1054942452	3300031231	Forest Soil	MSDFIQFKTNHGDIWLRPSAVIGIARETTRTTAMRLVDGKVYNVPGSPKDVFNALGASFSSEAA
Ga0170820_120165371	3300031446	Forest Soil	MSDFIQFKTNQGDIWLRPSAVIGVARETTHTTAMRLVDGKVYNVPGSPKDVFNALGASFSSEAA
Ga0170818_1057331141	3300031474	Forest Soil	MSDFIQFKTNHGDIWLRPSAVIGVARETTRTTAMRLVDGKVYNVAGSPKDVLDALGASFTSQAA
Ga0318516_106705472	3300031543	Soil	MSDFIQFKTNHRDIWLRPSAIIGVARETTHTTAMRLIDGKVYSVAGSPKDVLDALGASVSSQAA
Ga0318534_100709973	3300031544	Soil	MSDFIQFKTNHGDIWLRPSAVIGVARETASSTAMRLVDGKVYNVAGSPKDILDALGASVSSQAA
Ga0318494_109571092	3300031751	Soil	QSPQNPLPLERPAPSKAVRNRVATRAAEKRPTMSDFIQFKTNHGDIWVRPSTIIGVARETAHTTAMRLVDGKVYYVAGSPKDVFDALGASVSSEAA
Ga0318521_102287942	3300031770	Soil	VTKRVANRAAERRPILSDFIQFKTNHGDIWLRPSAIIGVARETTSTTAMRLIDGKVYSVAGSPKDVLDALGASVSSQAA
Ga0318529_103818492	3300031792	Soil	MSDFIQFKTNYGDIWLRPSAVIGVAWETASSTAMRLIDGKVYNVAGSPKDVLDALGASVSSQAA
Ga0318550_101656713	3300031797	Soil	FKTNHGDIWLRPSAIIGVARETASTTAMRLVDGKVYNVAGSPKDVLDALGASFSSQAA
Ga0318550_102130251	3300031797	Soil	SPAHRRTVTKRVANRAAERRPILSDFIQFKTNHGDIWLRPSAVIGVARETASSTAMRLVDGKVYNVAGSPKDILDALGASFSSQAA
Ga0306925_104266853	3300031890	Soil	MSDFIQFKTNHGDIWLRPSAVIGVARETASSTAMRLVDGKVYNVAGSPKDILDALGASFSSQAA
Ga0318522_103983191	3300031894	Soil	LESPAHRRTVTKRGANWAAERRPIMSDFIQFKTNHGDIWLRPSAVIGVARETASSTAMRLVDGKVYNVAGSPKDILDALGASFSSQAA
Ga0306921_109982841	3300031912	Soil	MSDFIQFKTNHGDIWLRPSAVIGVARETASSTAMRLVDGKVYNVAGSPKDILDALGASFS
Ga0306921_115654481	3300031912	Soil	MSDFIQFKTNHGDIWLRPSAIIGVARETASTTAMRLVDGKVYNVAGSPKDVLDALGASFSSQAA
Ga0306921_124653181	3300031912	Soil	MSDFIQFKTNDGDIWLRPSAVIGVARETTSTTAMRLIDGKVYNVAGSPKDVLDALGASFSPQAA
Ga0310910_102532624	3300031946	Soil	YGDIWLRPSAVIGVAWETASSTAMRLIDGKVYNVAGSPKDVLDALGASFSSQAA
Ga0306926_112168232	3300031954	Soil	MSDFIEFKTNHGDIWLRPSAVIGVAQETTHTTAMRLVDGKVYHVAGSPKDVLDALGASGSSQAA
Ga0306926_128432731	3300031954	Soil	MSNFIQFKTSHGDVWLRPRAVIGVAQQTTRTTAMRLVDGKVYNVAGSPKDVLDALGASFTSQAA
Ga0318569_105412891	3300032010	Soil	MSDFIQFKTNHGDIWLRPSAVIGVARETASSTAMRLVDGKVYNVPGSPKDILDALGASFSSQAA
Ga0318507_100323041	3300032025	Soil	MSDFIQFKTNHGDIWLRPSAIIGVARETAHTTAMRLVDGKVYNVAGSPKDVLDALGASFSSQAA
Ga0310911_101245411	3300032035	Soil	SPAHRRTVTKRVANRAAERRPILSDFIQFKTNHGDIWLRPSAVIGVARETASSTAMRLVDGKVYNVPGSPKDVLDALGASVSSQAA
Ga0318559_103451311	3300032039	Soil	MSDFIQFKTNHGDIWVRPGAIIGVARETTHTTAMRLVDGKVYYVAGSPKDVFEALSASVSPKAA
Ga0318514_107745472	3300032066	Soil	MSDFIQFKTNHGDIWLRPSAVIGVARETASSTAMRLVDGKVYNVAGSPKDILDALGASFSAQSA
Ga0306924_111507731	3300032076	Soil	MSDFIEFKTNHGDIWLRPSAVIGVAQETTHPTAMRLVDGKVYNVAGSPRDVLDVLGATCTSKAI

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F073839

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences