Metagenome / Metatranscriptome Family F073782

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F073782
Family Type	Metagenome / Metatranscriptome
Number of Sequences	120
Average Sequence Length	98 residues
Representative Sequence	FQWNELSFGILIALALAAIFWIPYLIKEIRDGKRSLGPLRMFRRGHVVLGPSTPSGAGDNNPGRRGDPAPGQPDAQADPYSDRAQRNGPPIQS
Number of Associated Samples	94
Number of Associated Scaffolds	120

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	68.91 %
% of genes near scaffold ends (potentially truncated)	35.00 %
% of genes from short scaffolds (< 2000 bps)	89.17 %
Associated GOLD sequencing projects	89
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.33

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (79.167 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (12.500 % of family members)
Environment Ontology (ENVO)	Unclassified (34.167 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (50.000 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 28.10% β-sheet: 6.61% Coil/Unstructured: 65.29%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.33
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.33
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 120 Family Scaffolds
PF13360	PQQ_2	5.83
PF13089	PP_kinase_N	4.17
PF06078	DUF937	2.50
PF13442	Cytochrome_CBB3	2.50
PF00578	AhpC-TSA	1.67
PF13090	PP_kinase_C	1.67
PF07690	MFS_1	1.67
PF05532	CsbD	0.83
PF13847	Methyltransf_31	0.83
PF00155	Aminotran_1_2	0.83
PF03050	DDE_Tnp_IS66	0.83
PF00011	HSP20	0.83
PF09335	SNARE_assoc	0.83
PF13401	AAA_22	0.83
PF05974	DUF892	0.83
PF02439	Adeno_E3_CR2	0.83
PF04241	DUF423	0.83
PF04679	DNA_ligase_A_C	0.83
PF13649	Methyltransf_25	0.83
PF02518	HATPase_c	0.83
PF02353	CMAS	0.83
PF02503	PP_kinase	0.83

COG ID	Name	Functional Category	% Frequency in 120 Family Scaffolds
COG3753	Uncharacterized conserved protein YidB, DUF937 family	Function unknown [S]	2.50
COG0071	Small heat shock protein IbpA, HSP20 family	Posttranslational modification, protein turnover, chaperones [O]	0.83
COG0398	Uncharacterized membrane protein YdjX, related to fungal oxalate transporter, TVP38/TMEM64 family	Function unknown [S]	0.83
COG0586	Membrane integrity protein DedA, putative transporter, DedA/Tvp38 family	Cell wall/membrane/envelope biogenesis [M]	0.83
COG0855	Polyphosphate kinase	Inorganic ion transport and metabolism [P]	0.83
COG1238	Uncharacterized membrane protein YqaA, VTT domain	Function unknown [S]	0.83
COG1793	ATP-dependent DNA ligase	Replication, recombination and repair [L]	0.83
COG2226	Ubiquinone/menaquinone biosynthesis C-methylase UbiE/MenG	Coenzyme transport and metabolism [H]	0.83
COG2227	2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase	Coenzyme transport and metabolism [H]	0.83
COG2230	Cyclopropane fatty-acyl-phospholipid synthase and related methyltransferases	Lipid transport and metabolism [I]	0.83
COG2363	Uncharacterized membrane protein YgdD, TMEM256/DUF423 family	Function unknown [S]	0.83
COG3237	Uncharacterized conserved protein YjbJ, UPF0337 family	Function unknown [S]	0.83
COG3436	Transposase	Mobilome: prophages, transposons [X]	0.83
COG3685	Ferritin-like metal-binding protein YciE	Inorganic ion transport and metabolism [P]	0.83

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	79.17 %
Unclassified	root	N/A	20.83 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	79.17 %
Unclassified	root	N/A	20.83 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	79.17 %
Unclassified	root	N/A	20.83 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	55.00 %
Unclassified	root	N/A	20.83 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	4.17 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	20.83 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	16.67 %
Vicinamibacteria	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria	0.83 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.83 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.83 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	20.83 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	11.67 %
Acidobacteria bacterium RIFCSPLOWO2_02_FULL_64_15	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPLOWO2_02_FULL_64_15	4.17 %
Acidobacteria bacterium RIFCSPLOWO2_12_FULL_66_21	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPLOWO2_12_FULL_66_21	0.83 %
Caulobacterales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Caulobacterales	0.83 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.83 %
Vicinamibacterales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales	0.83 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	20.83 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	11.67 %
Acidobacteria bacterium RIFCSPLOWO2_02_FULL_64_15	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPLOWO2_02_FULL_64_15	4.17 %
Vicinamibacteraceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae	0.83 %
unclassified Caulobacterales	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Caulobacterales → unclassified Caulobacterales	0.83 %
Acidobacteria bacterium RIFCSPLOWO2_12_FULL_66_21	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPLOWO2_12_FULL_66_21	0.83 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.83 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	20.83 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	11.67 %
Acidobacteria bacterium RIFCSPLOWO2_02_FULL_64_15	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPLOWO2_02_FULL_64_15	4.17 %
Luteitalea	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae → Luteitalea	0.83 %
Caulobacterales bacterium 32-69-10	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Caulobacterales → unclassified Caulobacterales → Caulobacterales bacterium 32-69-10	0.83 %
Acidobacteria bacterium RIFCSPLOWO2_12_FULL_66_21	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPLOWO2_12_FULL_66_21	0.83 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.83 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	20.83 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	11.67 %
Acidobacteria bacterium RIFCSPLOWO2_02_FULL_64_15	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPLOWO2_02_FULL_64_15	4.17 %
unclassified Luteitalea	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae → Luteitalea → unclassified Luteitalea	0.83 %
Caulobacterales bacterium 32-69-10	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Caulobacterales → unclassified Caulobacterales → Caulobacterales bacterium 32-69-10	0.83 %
Acidobacteria bacterium RIFCSPLOWO2_12_FULL_66_21	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPLOWO2_12_FULL_66_21	0.83 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.83 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	20.83 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	11.67 %
Acidobacteria bacterium RIFCSPLOWO2_02_FULL_64_15	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPLOWO2_02_FULL_64_15	4.17 %
Luteitalea sp.	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae → Luteitalea → unclassified Luteitalea → Luteitalea sp.	0.83 %
Caulobacterales bacterium 32-69-10	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Caulobacterales → unclassified Caulobacterales → Caulobacterales bacterium 32-69-10	0.83 %
Acidobacteria bacterium RIFCSPLOWO2_12_FULL_66_21	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPLOWO2_12_FULL_66_21	0.83 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.83 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.83 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2067725004\|GPKC_F5V46DG04JSTZK	All Organisms → cellular organisms → Bacteria → Acidobacteria	512	Open in IMG/M
3300000364\|INPhiseqgaiiFebDRAFT_105556995	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1406	Open in IMG/M
3300000364\|INPhiseqgaiiFebDRAFT_105557522	All Organisms → cellular organisms → Bacteria	1251	Open in IMG/M
3300000550\|F24TB_10538500	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	591	Open in IMG/M
3300000559\|F14TC_104773480	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	554	Open in IMG/M
3300000955\|JGI1027J12803_107569518	Not Available	740	Open in IMG/M
3300000956\|JGI10216J12902_105877936	All Organisms → cellular organisms → Bacteria	1481	Open in IMG/M
3300001431\|F14TB_100830376	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1487	Open in IMG/M
3300004156\|Ga0062589_100926985	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPLOWO2_02_FULL_64_15	805	Open in IMG/M
3300004463\|Ga0063356_100703538	All Organisms → cellular organisms → Bacteria	1390	Open in IMG/M
3300004463\|Ga0063356_103782556	Not Available	652	Open in IMG/M
3300004463\|Ga0063356_104727298	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	585	Open in IMG/M
3300004480\|Ga0062592_102334636	Not Available	535	Open in IMG/M
3300005093\|Ga0062594_102346500	Not Available	581	Open in IMG/M
3300005093\|Ga0062594_102576232	All Organisms → cellular organisms → Bacteria → Acidobacteria	560	Open in IMG/M
3300005293\|Ga0065715_10545174	All Organisms → cellular organisms → Bacteria → Acidobacteria	745	Open in IMG/M
3300005331\|Ga0070670_100253296	All Organisms → cellular organisms → Bacteria	1534	Open in IMG/M
3300005354\|Ga0070675_100352610	All Organisms → cellular organisms → Bacteria	1305	Open in IMG/M
3300005364\|Ga0070673_101622059	Not Available	611	Open in IMG/M
3300005438\|Ga0070701_11204135	All Organisms → cellular organisms → Bacteria → Acidobacteria	537	Open in IMG/M
3300005444\|Ga0070694_100132503	All Organisms → cellular organisms → Bacteria → Acidobacteria	1802	Open in IMG/M
3300005445\|Ga0070708_100021460	All Organisms → cellular organisms → Bacteria → Proteobacteria	5460	Open in IMG/M
3300005467\|Ga0070706_100501169	All Organisms → cellular organisms → Bacteria → Proteobacteria	1130	Open in IMG/M
3300005468\|Ga0070707_100629779	All Organisms → cellular organisms → Bacteria → Acidobacteria	1035	Open in IMG/M
3300005536\|Ga0070697_100857965	All Organisms → cellular organisms → Bacteria → Acidobacteria	805	Open in IMG/M
3300005538\|Ga0070731_10528630	All Organisms → cellular organisms → Bacteria → Acidobacteria	785	Open in IMG/M
3300005538\|Ga0070731_11138421	All Organisms → cellular organisms → Bacteria	515	Open in IMG/M
3300005545\|Ga0070695_100798348	All Organisms → cellular organisms → Bacteria	756	Open in IMG/M
3300005617\|Ga0068859_101695837	Not Available	698	Open in IMG/M
3300005713\|Ga0066905_101967543	Not Available	542	Open in IMG/M
3300005719\|Ga0068861_102042064	Not Available	572	Open in IMG/M
3300005844\|Ga0068862_101001855	All Organisms → cellular organisms → Bacteria → Acidobacteria	826	Open in IMG/M
3300006176\|Ga0070765_101443668	All Organisms → cellular organisms → Bacteria → Acidobacteria	648	Open in IMG/M
3300006845\|Ga0075421_101498150	All Organisms → cellular organisms → Bacteria → Acidobacteria	738	Open in IMG/M
3300006852\|Ga0075433_10245481	All Organisms → cellular organisms → Bacteria → Proteobacteria	1589	Open in IMG/M
3300006852\|Ga0075433_10780444	All Organisms → cellular organisms → Bacteria → Acidobacteria	835	Open in IMG/M
3300006914\|Ga0075436_101527067	Not Available	507	Open in IMG/M
3300007004\|Ga0079218_10143048	All Organisms → cellular organisms → Bacteria	1731	Open in IMG/M
3300009147\|Ga0114129_10694308	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1309	Open in IMG/M
3300009147\|Ga0114129_11141750	All Organisms → cellular organisms → Bacteria → Acidobacteria	973	Open in IMG/M
3300009147\|Ga0114129_11520258	All Organisms → cellular organisms → Bacteria → Acidobacteria	822	Open in IMG/M
3300009156\|Ga0111538_11910303	All Organisms → cellular organisms → Bacteria → Acidobacteria	747	Open in IMG/M
3300009162\|Ga0075423_10256433	All Organisms → cellular organisms → Bacteria → Acidobacteria	1832	Open in IMG/M
3300009610\|Ga0105340_1019537	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2646	Open in IMG/M
3300010362\|Ga0126377_10275300	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1650	Open in IMG/M
3300010403\|Ga0134123_10653341	All Organisms → cellular organisms → Bacteria → Acidobacteria	1020	Open in IMG/M
3300010403\|Ga0134123_11358439	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	749	Open in IMG/M
3300010403\|Ga0134123_12732133	All Organisms → cellular organisms → Bacteria → Acidobacteria	562	Open in IMG/M
3300010878\|Ga0136899_10402783	Not Available	553	Open in IMG/M
3300011120\|Ga0150983_14760965	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	662	Open in IMG/M
3300011269\|Ga0137392_10586017	All Organisms → cellular organisms → Bacteria → Acidobacteria	926	Open in IMG/M
3300011269\|Ga0137392_10901361	Not Available	728	Open in IMG/M
3300011271\|Ga0137393_10425263	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPLOWO2_12_FULL_66_21	1138	Open in IMG/M
3300011271\|Ga0137393_10765430	All Organisms → cellular organisms → Bacteria	826	Open in IMG/M
3300011332\|Ga0126317_10378116	All Organisms → cellular organisms → Bacteria → Acidobacteria	510	Open in IMG/M
3300011423\|Ga0137436_1002095	All Organisms → cellular organisms → Bacteria	5276	Open in IMG/M
3300011429\|Ga0137455_1064509	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPLOWO2_02_FULL_64_15	1046	Open in IMG/M
3300012166\|Ga0137350_1101861	All Organisms → cellular organisms → Bacteria → Acidobacteria	582	Open in IMG/M
3300012212\|Ga0150985_104898828	All Organisms → cellular organisms → Bacteria → Acidobacteria	629	Open in IMG/M
3300012212\|Ga0150985_107905620	All Organisms → cellular organisms → Bacteria	2664	Open in IMG/M
3300012212\|Ga0150985_109652153	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Caulobacterales → unclassified Caulobacterales → Caulobacterales bacterium 32-69-10	928	Open in IMG/M
3300012212\|Ga0150985_113418158	All Organisms → cellular organisms → Bacteria	1100	Open in IMG/M
3300012212\|Ga0150985_114515256	All Organisms → cellular organisms → Bacteria	884	Open in IMG/M
3300012232\|Ga0137435_1138191	All Organisms → cellular organisms → Bacteria → Acidobacteria	742	Open in IMG/M
3300012469\|Ga0150984_117354717	Not Available	561	Open in IMG/M
3300012469\|Ga0150984_123304429	Not Available	500	Open in IMG/M
3300013297\|Ga0157378_13037243	All Organisms → cellular organisms → Bacteria → Acidobacteria	521	Open in IMG/M
3300014326\|Ga0157380_10352448	All Organisms → cellular organisms → Bacteria → Acidobacteria	1378	Open in IMG/M
3300014326\|Ga0157380_11275896	All Organisms → cellular organisms → Bacteria	781	Open in IMG/M
3300015201\|Ga0173478_10196815	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPLOWO2_02_FULL_64_15	842	Open in IMG/M
3300015258\|Ga0180093_1112835	All Organisms → cellular organisms → Bacteria → Acidobacteria	676	Open in IMG/M
3300015371\|Ga0132258_10752473	All Organisms → cellular organisms → Bacteria → Acidobacteria	2455	Open in IMG/M
3300015371\|Ga0132258_12297489	All Organisms → cellular organisms → Bacteria	1353	Open in IMG/M
3300015372\|Ga0132256_101917629	Not Available	699	Open in IMG/M
3300015372\|Ga0132256_103282756	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	544	Open in IMG/M
3300015373\|Ga0132257_102106363	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPLOWO2_02_FULL_64_15	729	Open in IMG/M
3300017965\|Ga0190266_10469461	All Organisms → cellular organisms → Bacteria → Acidobacteria	723	Open in IMG/M
3300018075\|Ga0184632_10277487	All Organisms → cellular organisms → Bacteria → Acidobacteria	728	Open in IMG/M
3300018081\|Ga0184625_10476479	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae → Luteitalea → unclassified Luteitalea → Luteitalea sp.	635	Open in IMG/M
3300018469\|Ga0190270_11233659	All Organisms → cellular organisms → Bacteria → Acidobacteria	787	Open in IMG/M
3300018469\|Ga0190270_11885481	All Organisms → cellular organisms → Bacteria → Acidobacteria	654	Open in IMG/M
3300018476\|Ga0190274_10034716	All Organisms → cellular organisms → Bacteria → Acidobacteria	3488	Open in IMG/M
3300018476\|Ga0190274_11245380	Not Available	829	Open in IMG/M
3300019229\|Ga0180116_1358595	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1856	Open in IMG/M
3300019238\|Ga0180112_1370531	All Organisms → cellular organisms → Bacteria	855	Open in IMG/M
3300019257\|Ga0180115_1314714	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2001	Open in IMG/M
3300019362\|Ga0173479_10008265	All Organisms → cellular organisms → Bacteria → Acidobacteria	2605	Open in IMG/M
3300019888\|Ga0193751_1197704	All Organisms → cellular organisms → Bacteria → Acidobacteria	676	Open in IMG/M
3300021082\|Ga0210380_10167755	All Organisms → cellular organisms → Bacteria	987	Open in IMG/M
3300021401\|Ga0210393_10045745	All Organisms → cellular organisms → Bacteria	3437	Open in IMG/M
3300021420\|Ga0210394_11427601	Not Available	588	Open in IMG/M
3300022195\|Ga0222625_1733480	All Organisms → cellular organisms → Bacteria → Acidobacteria	534	Open in IMG/M
3300025922\|Ga0207646_10187598	All Organisms → cellular organisms → Bacteria → Acidobacteria	1868	Open in IMG/M
3300025922\|Ga0207646_10422292	All Organisms → cellular organisms → Bacteria → Acidobacteria	1204	Open in IMG/M
3300025922\|Ga0207646_10546593	All Organisms → cellular organisms → Bacteria → Acidobacteria	1042	Open in IMG/M
3300025925\|Ga0207650_10820271	Not Available	789	Open in IMG/M
3300025926\|Ga0207659_10596245	All Organisms → cellular organisms → Bacteria	942	Open in IMG/M
3300025926\|Ga0207659_10662930	Not Available	892	Open in IMG/M
3300025937\|Ga0207669_10109430	All Organisms → cellular organisms → Bacteria	1848	Open in IMG/M
3300025972\|Ga0207668_11897490	Not Available	537	Open in IMG/M
3300026089\|Ga0207648_11706668	Not Available	591	Open in IMG/M
3300028812\|Ga0247825_10016217	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	4862	Open in IMG/M
3300028906\|Ga0308309_10828734	All Organisms → cellular organisms → Bacteria → Acidobacteria	804	Open in IMG/M
3300031058\|Ga0308189_10239424	All Organisms → cellular organisms → Bacteria → Acidobacteria	679	Open in IMG/M
3300031092\|Ga0308204_10229491	All Organisms → cellular organisms → Bacteria → Acidobacteria	592	Open in IMG/M
3300031092\|Ga0308204_10332276	Not Available	518	Open in IMG/M
3300031184\|Ga0307499_10148419	All Organisms → cellular organisms → Bacteria → Acidobacteria	686	Open in IMG/M
3300031226\|Ga0307497_10171953	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	917	Open in IMG/M
3300031716\|Ga0310813_10327708	All Organisms → cellular organisms → Bacteria → Acidobacteria	1299	Open in IMG/M
3300031740\|Ga0307468_101311184	All Organisms → cellular organisms → Bacteria → Acidobacteria	660	Open in IMG/M
3300031892\|Ga0310893_10034061	All Organisms → cellular organisms → Bacteria	1599	Open in IMG/M
3300031940\|Ga0310901_10115348	All Organisms → cellular organisms → Bacteria → Acidobacteria	990	Open in IMG/M
3300031965\|Ga0326597_10812468	All Organisms → cellular organisms → Bacteria	968	Open in IMG/M
3300032002\|Ga0307416_101344292	Not Available	820	Open in IMG/M
3300032012\|Ga0310902_10644103	Not Available	708	Open in IMG/M
3300032013\|Ga0310906_10149808	Not Available	1359	Open in IMG/M
3300032075\|Ga0310890_10067297	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2121	Open in IMG/M
3300032211\|Ga0310896_10165134	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPLOWO2_02_FULL_64_15	1062	Open in IMG/M
3300034257\|Ga0370495_0009068	All Organisms → cellular organisms → Bacteria	2957	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	65.83%
Host-Associated	Host-Associated	34.17%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	54.17%
Plants	Host-Associated → Plants	34.17%
Aquatic	Environmental → Aquatic	11.67%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	54.17%
Rhizosphere	Host-Associated → Plants → Rhizosphere	20.83%
Rhizoplane	Host-Associated → Plants → Rhizoplane	13.33%
Sediment	Environmental → Aquatic → Sediment	6.67%
Freshwater	Environmental → Aquatic → Freshwater	5.00%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	38.33%
Loam	Environmental → Terrestrial → Soil → Loam	15.00%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	10.83%
Soil	Host-Associated → Plants → Rhizosphere → Soil	10.00%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	7.50%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	6.67%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	5.83%
Sediment	Environmental → Aquatic → Freshwater → Sediment	4.17%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	0.83%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	0.83%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	20.83%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	10.83%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	10.00%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	9.17%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	7.50%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	6.67%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	5.83%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	5.83%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	4.17%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	4.17%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	4.17%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	3.33%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	3.33%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	2.50%
Unclassified	Environmental → Aquatic → Freshwater → Groundwater → Unclassified	0.83%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	0.83%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	12.50%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	9.17%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	7.50%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	5.83%
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	5.00%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	4.17%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	4.17%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	4.17%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	3.33%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	3.33%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	3.33%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	3.33%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	2.50%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	2.50%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	2.50%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	2.50%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	2.50%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	2.50%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	1.67%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	1.67%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	1.67%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	1.67%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	1.67%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere	1.67%
Soil	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil	0.83%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	0.83%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.83%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.83%
Untreated Peat Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil	0.83%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	0.83%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	0.83%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Miscanthus Rhizosphere	0.83%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	0.83%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	0.83%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.83%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2067725004	Soil microbial communities from Great Prairies - Kansas Corn soil	Environmental	Open in IMG/M
3300000364	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000550	Amended soil microbial communities from Kansas Great Prairies, USA - BrdU amended with acetate total DNA F2.4 TB clc assemly	Environmental	Open in IMG/M
3300000559	Amended soil microbial communities from Kansas Great Prairies, USA - control no BrdU total DNA F1.4 TC clc assemly	Environmental	Open in IMG/M
3300000955	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300001431	Amended soil microbial communities from Kansas Great Prairies, USA - BrdU F1.4TB clc assemly	Environmental	Open in IMG/M
3300004156	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 1	Environmental	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300004480	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 4	Environmental	Open in IMG/M
3300005093	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All Blocks	Environmental	Open in IMG/M
3300005293	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Bulk Soil Replicate 1 : eDNA_1	Host-Associated	Open in IMG/M
3300005331	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG	Host-Associated	Open in IMG/M
3300005354	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG	Host-Associated	Open in IMG/M
3300005364	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG	Host-Associated	Open in IMG/M
3300005438	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-2 metaG	Environmental	Open in IMG/M
3300005444	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG	Environmental	Open in IMG/M
3300005445	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG	Environmental	Open in IMG/M
3300005467	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG	Environmental	Open in IMG/M
3300005468	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG	Environmental	Open in IMG/M
3300005471	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG	Environmental	Open in IMG/M
3300005536	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG	Environmental	Open in IMG/M
3300005538	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen03_05102014_R1	Environmental	Open in IMG/M
3300005545	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaG	Environmental	Open in IMG/M
3300005617	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2	Host-Associated	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005719	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2	Host-Associated	Open in IMG/M
3300005844	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2	Host-Associated	Open in IMG/M
3300006176	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5	Environmental	Open in IMG/M
3300006845	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5	Host-Associated	Open in IMG/M
3300006852	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2	Host-Associated	Open in IMG/M
3300006914	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5	Host-Associated	Open in IMG/M
3300007004	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Compost	Environmental	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated	Open in IMG/M
3300009610	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT700	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010403	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-3	Environmental	Open in IMG/M
3300010878	Forest soil microbial communities from USA, for metatranscriptomics studies - Jemez Pines Pi 3A (Eukaryote Community Metatranscriptome) (version 7)	Environmental	Open in IMG/M
3300011120	Combined assembly of Microbial Forest Soil metaT	Environmental	Open in IMG/M
3300011269	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4A metaG	Environmental	Open in IMG/M
3300011271	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4B metaG	Environmental	Open in IMG/M
3300011332	Soil microbial communities from California, USA to study soil gas exchange rates - SR-CA-SC2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300011423	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT119_2	Environmental	Open in IMG/M
3300011429	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT600_2	Environmental	Open in IMG/M
3300012166	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT660_2	Environmental	Open in IMG/M
3300012212	Combined assembly of Hopland grassland soil	Host-Associated	Open in IMG/M
3300012232	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT100_2	Environmental	Open in IMG/M
3300012469	Combined assembly of Soil carbon rhizosphere	Host-Associated	Open in IMG/M
3300013297	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG	Host-Associated	Open in IMG/M
3300014326	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG	Host-Associated	Open in IMG/M
3300015201	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S014-104B-1 (version 2)	Environmental	Open in IMG/M
3300015258	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLIBT45_16_1Da	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300017965	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 220 T	Environmental	Open in IMG/M
3300018075	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_50_b1	Environmental	Open in IMG/M
3300018081	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_30_b1	Environmental	Open in IMG/M
3300018469	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 320 T	Environmental	Open in IMG/M
3300018476	Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 531 T	Environmental	Open in IMG/M
3300019229	Metatranscriptome of soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaT ERMLT660_1_16_1Ra (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019238	Metatranscriptome of soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaT ERMLT466_16_1Ra (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019257	Metatranscriptome of soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaT ERMLT660_16_1Ra (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019362	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S104-311B-1 (version 2)	Environmental	Open in IMG/M
3300019888	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L1c2	Environmental	Open in IMG/M
3300021082	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_5_coex redo	Environmental	Open in IMG/M
3300021401	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-O	Environmental	Open in IMG/M
3300021420	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M	Environmental	Open in IMG/M
3300022195	Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300025922	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025925	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025926	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025937	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025972	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026089	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300028812	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Vanillin_Day48	Environmental	Open in IMG/M
3300028906	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5 (v2)	Environmental	Open in IMG/M
3300031058	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_184 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031092	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_367 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031184	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 13_S	Environmental	Open in IMG/M
3300031226	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 10_S	Environmental	Open in IMG/M
3300031716	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YN3	Environmental	Open in IMG/M
3300031740	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05	Environmental	Open in IMG/M
3300031892	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C0D2	Environmental	Open in IMG/M
3300031940	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24D2	Environmental	Open in IMG/M
3300031965	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT100D185	Environmental	Open in IMG/M
3300032002	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3	Host-Associated	Open in IMG/M
3300032012	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24D3	Environmental	Open in IMG/M
3300032013	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D3	Environmental	Open in IMG/M
3300032075	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D3	Environmental	Open in IMG/M
3300032211	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C8D1	Environmental	Open in IMG/M
3300034257	Peat soil microbial communities from wetlands in Alaska, United States - Frozen_pond_02D_17	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
GPKC_00621590	2067725004	Soil	IVIALALSALLCIPYLIKEIRDGKADFGPLRRLRRGKVVLGPKTPTGASDVNPGRIGDPAPGQPDGQADPYGPRAQRNGTPIQS
INPhiseqgaiiFebDRAFT_1055569952	3300000364	Soil	MDLTYGILIALALALVLLVPFLIKEIRDGKRELGPLRRFGRHGVTLGPTTPTGTGDNTVGRRGEPAPGQPDAQDDPYGTRAQRNAPPIKS*
INPhiseqgaiiFebDRAFT_1055575221	3300000364	Soil	MDDMSVALNALQLTELTYGVLIALALTLALLVPFLIKEIRDGKSELGPLRRFGRHGVTLGPTTPTGTGDNTVGRRGEPAPGQPDAQDDPYGTRAQRNAPPIKS*
F24TB_105385002	3300000550	Soil	MDLTYGILIALGLALVLLVPFLIKEIRDGKRELGPLRRFGRHGVTLGPTTPTGTGDNTVGRRGEPAPGQPDAQDDPYSTRAQRNAPQVKS*
F14TC_1047734801	3300000559	Soil	MDDMSVALYALQLTDLTYGILIALALALVLLVPFLIKEIRDGKRELGPLRRFGRYGVTLGPTTPTGTGDNTVGRREEPAPGQPDAQDDPYSTRAQRNAP
JGI1027J12803_1075695182	3300000955	Soil	MSVALNALQLTELTYGVLIALALTLALLVPFLIKEIRDGKSELGPLRRFGRHGVTLGPTTPTGTGDNTVGRRGEPAPGQPDAQDDPYGTRAQRNAPPIKS*
JGI10216J12902_1058779362	3300000956	Soil	MPVLFYAIQWNELSIGILIALSLAAVFMVPYLIKEIRDGKGQLGPMRIFRRGKVVLGPSTPVGAGDNNPGTRGSPAPGQPDAQGDPYGERAQRSGPPIQS*
F14TB_1008303762	3300001431	Soil	MDLTYGILIALGLALALLVPFLIKEIRDGKRELGPLRRFGRHGVTLGPTTPTGTGDNTVGRRGEPAPGQPDAQDDPYSTRAQRNAPQVKS*
Ga0062589_1009269852	3300004156	Soil	MPLYALQWNGLSIGIVIALSLAAIFWIPYLIKEIRDGKGELGPMRMFRRGKVVLGPPTPVGAGDNHPGRRGDPAPGQPDGQA
Ga0063356_1007035382	3300004463	Arabidopsis Thaliana Rhizosphere	MPVLLYAIQWNELSIGILIALSLAAVFMVPYLIKEIRDGKGQLGPMRIFRRGKVVLGPSTPVGAGDNNPGTRGSPAPGQPDAQGDPYGERAQRSGPPIQS*
Ga0063356_1037825562	3300004463	Arabidopsis Thaliana Rhizosphere	MSATDIGIGILIALALAALFWIPYLFKEIRDGKREFGPLRRLGKDRVALGPPTPTGTGDFNPGRVGDPAPGQADAQADPYDARAQRKAPHVKS*
Ga0063356_1047272982	3300004463	Arabidopsis Thaliana Rhizosphere	MVRTLLALQWTELSVGLLISIALAALLWIPYLIKEIRDGKRELGPLRRLGREKVTLGAPTPVGAGDNNPGRPGDPAPGQPDGQADPYSARAQRNAPPIRS*
Ga0062592_1023346361	3300004480	Soil	MLVSLIALQWTYLSTAVLVAVALATFLLVPYLIEEIRHGKRDLGPLRRFRHGTVVLGPESPSGAGDNQPGRRGDPAPGQPDAQADPYDAQAQRNAPPIKS*
Ga0062594_1023465002	3300005093	Soil	AADLSLPCLRFHYYSVSSVVADSGTSVAADIKGCLMSDMTIAILIALALAAVFWIPYLIKEIKDGKREFGPLRRLERNRVAAGPATPTGASDNNPGRRGDPAPGQPDGQADPYDSRAQRNAPPVKS*
Ga0062594_1025762321	3300005093	Soil	MSMPLYALQWNGLSIGIVIALSLAAIFWIPYLIKEIRDGKGELGPMRMFRRGKVVLGPPTPVGAGDNHPGRRGDPAPGQPDGQADPYSDRAQRSGPPI
Ga0065715_105451742	3300005293	Miscanthus Rhizosphere	GTAVAPLPVRGFLMPVSLFAFQWNELSFGILIALALAAVFCVPYLIKEIRDGKREMGPLRMFRRGHVVLGPETPSGAGDNHPGRRGDPAPGQPDGQADPYSERAQRDGPPVQS*
Ga0070670_1002532962	3300005331	Switchgrass Rhizosphere	MEAPVLRSHAWSLRVVIGAHSGMSVAVHITGCVMSDMTIAILIALALAAVFWIPYLMKEIRDGKREFGPLRRLERNRVAAGPATPTGASDNNPGRRGDPAPGQPDGQADPYDSRAQRNAPPVKS*
Ga0070675_1003526101	3300005354	Miscanthus Rhizosphere	MSDMTIAILIALALAAVFWIPYLIKEIKDGKREFGPLRRLERNRVAAGPATPTGASDNNPGRRGDPAPGQPDGQADPYDSRAQRNAPPVKS*
Ga0070673_1016220591	3300005364	Switchgrass Rhizosphere	MSDMTIAILIALALAAVFWIPYLIKEIKDGKREFGPLRRLERNRVAAGPATPTGASDNNPGRRGDPAPGQPDGQADPYDSRAQRNAPP
Ga0070701_112041352	3300005438	Corn, Switchgrass And Miscanthus Rhizosphere	MLNLVALQWTQLSWAIVIAVALAAVFWTPYLLKEIRDGKGELGPIRRLMGNRVVLGPPAPTGAGDNNPGRRGDPAPGQPDAQADPYDDRAQRNAPPVRS*
Ga0070694_1001325032	3300005444	Corn, Switchgrass And Miscanthus Rhizosphere	MFAWLIALQWTGLSSGILIAIALMVLLCVPYLIKEIRSGKRELGPLRRLWRGKVILGPPTPSGAGDNNPGRRGDRAPGQPDAQADPYGARAQRNAPPIQS*
Ga0070708_1000214608	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	MFSLLLELQWTDVGLGVVVVLILTAILLIPFLAQEIREGKREFGPLRRLRGGKVVLGPQTPTGAGDYNPGRAGDPAPGQPDAQADPYGRRAQRNAPPIRS*
Ga0070706_1005011693	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	MPEPLFAFQWDELSFGILIALALAAIFWIPYLIKEIRDGKRQLGPLRMFRRGHVVLGPQTPSGAGDNNPGRRGDPAPGQPDAQADPYSDRAQRSGPPIQS*
Ga0070707_1006297791	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	MFAWLIALQWTGLSSGILIAIALMVLLCVPYLIKEIRSGKRELGPLRRLWRGKVILGPPTPSGSGDNNPGRRGDRAPGQPDAQADPYGARAQRNAPPIQS*
Ga0070698_1019445631	3300005471	Corn, Switchgrass And Miscanthus Rhizosphere	ALLIPFLIKEIRDGKAEFGPLRRFARGKAVLGPQTPTGAGDVNPGRRGDPAPGQPDGQADPYGPHAQRNGPSIQS*
Ga0070697_1008579651	3300005536	Corn, Switchgrass And Miscanthus Rhizosphere	RQLLLISGRGFFMPEPLFAFQWDELSFGILIALALAAIFWIPYLIKEIRDGKRQLGPLRMFRRGHVVLGPQTPSGAGDNNPGRRGDPAPGQPDAQADPYSDRAQRSGPPIQS*
Ga0070731_105286301	3300005538	Surface Soil	MPMLLLALQWNDLTVGVVVAIALSGFLLIPYLIKEIRDGKAELGPLRRMGPRGTIRLGPVTPTGAGDNNPGRVGDPAPGQPDGQADPYSERARRGAPPIKS*
Ga0070731_111384211	3300005538	Surface Soil	MAFLNSHWAEVSVAILLAIALLVGLQIPYLIKELRDGKREFGPLRRLGRRGVILGPSTPTGAGDSNPGRRGDPAPGQPDAQADPYGPRGQRHGPPIRS*
Ga0070695_1007983483	3300005545	Corn, Switchgrass And Miscanthus Rhizosphere	ALALASALLIPFLIKEIRDGKAEFGPLRRFARGKAVLGPQTPTGAGDVNPGRRGDPAPGQPDGQADPYGPHAQRNGPSIQS*
Ga0068859_1016958371	3300005617	Switchgrass Rhizosphere	MLVSLIALQWTYLTTAILVAVALATFLLVPFLIEEIRRGKKDLGPLRKFSHGTVVLGPESPSGAGDNQPGRRGDPAPGQPDAQADPYDAQAQRNAPPIKS*
Ga0066905_1019675431	3300005713	Tropical Forest Soil	MDDLSVALYALQLTDLTYGILIALGLALALLVPFLIKEIRDGKRELGPLGRFGRHGVTLGPTTPTGTGDNTVGRRGEPAPGQPDAQDDPYSSRAQRNAPPVKS*
Ga0068861_1020420641	3300005719	Switchgrass Rhizosphere	GREVYAMSFSLLALQWPDLSWGIVIAVALAALLCIPYLIKEIRDGKADFGPLRRLRRGKVVLGPQTPTGASDVNPGRIGDPTPGQLDGQADPYGPRAQRNAPPIQS*
Ga0068862_1010018552	3300005844	Switchgrass Rhizosphere	MPVSLFAFQWNELSFGILIALALAAIFCVPYLIKEIRDGKREMGPLRMFRRGHVVLGPETPSGAGDNHPGRRGDPAPGQPDGQADPYSERAQRDGPPVQS*
Ga0070765_1014436682	3300006176	Soil	MSFSLLALQWTELSFGLLVVIALAAVLLVPYLIKEIRGGKRELGPLRRLGRDKVILGSSTPIGAGDNNPGRRGDPAPGQPDGQPDPYGARAQRNAPPIKS*
Ga0075421_1014981501	3300006845	Populus Rhizosphere	AELNNAARSISHRIHGKENVMPSNLMWAIAIALVLASALLIPFLIKEIRDGKAEFGPLRRFARGKVVLGPQTPTGAGDVNPGRRGDPAPGQPDGQADPYGPQAQRNGPSIQS*
Ga0075433_102454811	3300006852	Populus Rhizosphere	MPALQLALQLTELTIGILVAMALGGLLLVPYLIKEIRDGKRELGPLRRMFPGRITLGPVAPTGAGDNNPGRRGDPAPGQPDARSDPYGPRAQRNAPPVKS*
Ga0075433_107804442	3300006852	Populus Rhizosphere	MLSNLSWGIVIALALACGLLIPYLIKEIRDGKAEFGPLRRLARGEVVLGPPTPTGAGDVNPGRRGDPAPGQPDGQADPYGPRAQRNAPSIHS*
Ga0075436_1015270672	3300006914	Populus Rhizosphere	MSDMTIAIVIALALAAAFWIPYLTKEIKDGKREFGPLRRLERNRVAAGPATPTGASDNNPGRRGDPAPGQPDGQADPYDAHAQRNAPPVKS*
Ga0079218_101430482	3300007004	Agricultural Soil	MPVSLLAVQWNELSLGILIALAVAAIFGIPYLIKEIRDGKRELGPLRMFRRGQVVLGPPTPSGAGDNHPGRRGDPAPGQPDAQADPYSDRAQRSGPPIQS*
Ga0114129_106943082	3300009147	Populus Rhizosphere	MDGMSVAVYTLQLTDLTYGILIAVALALALLVPFLIKEIKDGKRELGPLRRFGRDGVTLGPTTPTGAGDNTVGRRGEPAPGQPDAQDDPYSTRAQRNAPPVKS*
Ga0114129_111417501	3300009147	Populus Rhizosphere	MLLFAFQWNELSFGILIALALAAIFWIPYLMKEIRDGKRELGPLRMFRRGHVVLGPQTPTGAGDINPGRRGDPAPGQPDAQADPYSDRAQRNGPPIQS*
Ga0114129_115202582	3300009147	Populus Rhizosphere	MSVARFWAEVHMSVWLLAFQWTGLSIGILVAILVAAIFLVPYLVKEIRDGKAELGPLRRLDRGKVTLGPVTPTGAGDNNPGRRGDPAPGQPDAQADPYGPRAQRNAPPIKS*
Ga0111538_119103031	3300009156	Populus Rhizosphere	MSLYALQWNGLTIGIVIALALAAIFWIPYLIKEIRDGKGELGPMRMFRRGKVVLGPPTPVGAGDNHPGRRGDPAPGQPDGQADPYSDRAQRSGPPIQS*
Ga0075423_102564332	3300009162	Populus Rhizosphere	MPALQLALQLTELTIGILVAMALGGLLLVPYLIKEIRDGKRELGPLRRMFPGRITLGPVAPTGAGDNNPGRRGDPAPGQPDARSDPYGPRAQRNAPPMKS*
Ga0105340_10195371	3300009610	Soil	MPVSLFAFQWNELSFGILIALTLAAIFWIPYLIKEIRDGKRELGPLRMFRRGHVVLGPQTPSGTGDNHPGRRGDPAPGQPDGQADPYSERAQRDGPPVQS*
Ga0126377_102753001	3300010362	Tropical Forest Soil	MSVALQTLQLTDLTYGILIALALALVLLVPFLIKEIRDGKKEMGPLRRFGRRGVMLGPTTPTGTGDNTVGRRGDPAPGQPDAQDDPYSTQAQRDAPPVKS*
Ga0134123_106533412	3300010403	Terrestrial Soil	MPLYALQWNGLSIGIVIALSLAAIFWIPYLIKEIRDGKGELGPMRMFRRGKVVLGPPTPVGAGDNHPGRRGDPAPGQPDGQADPYSDRAQRSGPPIQS*
Ga0134123_113584392	3300010403	Terrestrial Soil	MLNLVALQWTQLSWAIVIAVALAAVFWTPYLLKEIRDGKGELGPIRRLMGDRVVLGPPAPTGAGDNNPGRRGDPAPGQPDAQADPYDDRAQRNAPPVRS*
Ga0134123_127321331	3300010403	Terrestrial Soil	TGGIILAIALAVTLWIPYLIKEIRDGKRDLGPLRRLGPGGKVTLGPNTPSGVGDINPGRRGDPAPGQPDAQADPYGERAQRNGPPIQS*
Ga0136899_104027831	3300010878	Soil	LSVGLLVSIAVAAILWIPYLIKEIRDGKRELGPLRRLGRRKIVLGPPTPVGAGDNNPGRPGDPAPGQPDGQADPYSARAQRNAPPIKS*
Ga0150983_147609651	3300011120	Forest Soil	MSFSLLALQWTELGFGLAVVIALAAVLLVPYLIKEIRGGKRELGPLRRLGRDQVTLGPPTPAGAGDNNPGRRGDPAPGQPDGQSDPYGARAQRNAPPIKS*
Ga0137392_105860172	3300011269	Vadose Zone Soil	MSVSLLALQWTDLGVGIVLAVALAAVLLLPYLIYEIRRGKGELGPLRRFVHGRVILGPTTPTGAGENTPGRRGDPAPGQPDAQADPYGAHAQRNAPPVKS*
Ga0137392_109013611	3300011269	Vadose Zone Soil	MSVLLLAFQWTDLGFGISLAVALAVVLLVPYLIYEIRRGKRELGPLRRLVQGKIILGPTTPTGAGDNAPGRRGDAAPGQLDAQADPYSARAQRNAPPVKS*
Ga0137393_104252632	3300011271	Vadose Zone Soil	MSVSLLAFQWTDLGFGISLAVALAVVLLVPYLIYEIRRGKRELGPLRRLVQGRIILGPTTPTGAGDNAPGRRGDAAPGQPDAQADPYSARAQRNAPPVKS*
Ga0137393_107654301	3300011271	Vadose Zone Soil	MSVSLLALQWTDLGVGIVLAVALAAVLLLPYLIYEIRRGKGELGPLRRLVHGRVILGPTTPTGAGENTPGRRGDPAPGQPDAQADPYDAHAQRNAPPVKS*
Ga0126317_103781161	3300011332	Soil	FKMLLALQWSELSVGLLISIALAAILWIPYLMKEIRDGKRELGPLRRLGRGKLILGPPTPVGAGDNNPGRRGDPAPGQPDGQADPYSVRAQRNAPPIKS*
Ga0137436_10020952	3300011423	Soil	MPVSLFAFQWNELSFGILIALTLAAIFWIPYLIKEIRDGKRELGPLRMFRRGHVVLGPQTPSGTGDNQPGRRGDPAPGQPDGQADPYSERAQRDGPPVQS*
Ga0137455_10645092	3300011429	Soil	MPVSLFAFQWNELSFGILIALTLAAIFWIPYLIKEIRDGKRELGPLRMFRRGHVVLGPQTPSGTGDNHPGRRGDPAPGQPDGQADPYSERAQRAGPPVQS*
Ga0137350_11018611	3300012166	Soil	MPVSLFAFQWTELSFGILIALALAAVFMIPYLIKEIRDGKGELGPMRIFRRGRVILGPSTPVGAGDNNPGTRGSPAPGQPDAQGDPYGERAQRNGPPIQS*
Ga0150985_1048988281	3300012212	Avena Fatua Rhizosphere	LSVGLLISIALAAILWIPYLMKEIRDGKRELGPLRRLGRGKLILGPPTPVGAGDNNPGRRGDPAPGQPDGQAEPCSVRAQCIAPPIKS*
Ga0150985_1079056201	3300012212	Avena Fatua Rhizosphere	MFHSLLALQWNELSWGLLISITLAALFWIPYLIKEIRDGKREFGPLRRLRGGRVVAGPPTPQGTGDNHPGRPGDPAPGQPDGQADPYSARAQRNAPPIRS*
Ga0150985_1096521531	3300012212	Avena Fatua Rhizosphere	MSVTLFVLEWTGMGIGIFVALALAVVLLVPYLIKEIRDGKRSLGPLRRLWRGRVVVGPAPPLGAGDNHPGKRGDPAPGQPDGQADPYDPRAQRKG*
Ga0150985_1134181581	3300012212	Avena Fatua Rhizosphere	GLAALFWIPYLRKEIHDGKREFGPLRRMRGGGVTVGPATPSGAGDFNPGRPGDPAPGQPDAQADPYGPRAQRGGPPVKS*
Ga0150985_1145152562	3300012212	Avena Fatua Rhizosphere	EPLEPLELQEGTSVAAVIARCVMSEVTVAILIAVVVAALFWVPYLTKEIRDGKREFGPLRRLGRTRVSVGPETPTGASDYNPGRPGDPAPGQTDAQADPYDARAQRNAPPIKS*
Ga0137435_11381911	3300012232	Soil	GRGFLMPVSLFAFQWNELSFGILIALTLAAIFWIPYLIKEIRDGKRELGPLRMFRRGHVVLGPQTPSGTGDNHPGRRGDPAPGQPDGQADPYSERAQRDGPPVQS*
Ga0150984_1173547171	3300012469	Avena Fatua Rhizosphere	MSEVTVAILIAVVVAALFWVPYLTKEIRDGKREFGPLRRLGRTRVSVGPETPTGASDYNPGRPGDPAPGQPDAQADPYDPRAQRNAPPIKS*
Ga0150984_1233044292	3300012469	Avena Fatua Rhizosphere	SEVTVAILIAVVLAALFWVPYLTKEIGDGKREFGPLRRLGRSKGAAGPATPTGAGDFNPGRPGDPAPGQPDAQADPYDTRAQQNAPPVKS*
Ga0157378_130372432	3300013297	Miscanthus Rhizosphere	MPSNLIWAIVIALALASALLIPFLIKEIRDGKAEFGPLRRFARGKVVLGPQTPTGAGDVNPGRRGDPAPGQPDGQADPYGPRAQRNAPSIQS*
Ga0157380_103524482	3300014326	Switchgrass Rhizosphere	MPLYALQWNGLSIGIVIALSLAAIFWIPYLIKEIRDGKGELGPMRMFRRGKVVLGPPTPVGAGDNHPGRRGDPAPGQPDGQADPYSVRAQRSGPPIQS*
Ga0157380_112758962	3300014326	Switchgrass Rhizosphere	MPSNLIWAIVIALVLASALLIPFLIKEIRDGKAEFGPLRRFARGKAVLGPQTPTGAGDVNPGRRGDPAPGQPDGQADPYGPHAQRNGPSIQS*
Ga0173478_101968152	3300015201	Soil	MPLYALQWNGLSIGIVIALSLAAIFWIPYLIKEIRDGKGELGPMRMFRRGKVVLGPPTPVGAGDNHPGRRGDPAPGQPDGQ
Ga0180093_11128351	3300015258	Soil	MSVSLYAVQWTELSIGILIALSLAAVFMIPYLIKEIRDGKGELGPMRIFRRGRVILGPSTPVGAGDNNPGTRGSPAPGQPDAQGDPYGERAQRNGPPIQS*
Ga0132258_107524733	3300015371	Arabidopsis Rhizosphere	MLSNLSWGIVIALVLASALLIPYLIKEIRDGKAEFGPLRRFVRGKVVLGPQTPTGAGDVNPGRPGDPAPGQPDAQADPYGPRAQHNAPSIQS*
Ga0132258_122974893	3300015371	Arabidopsis Rhizosphere	MAHMSVALQTLQLTDLTYGILIALALALALLVPFLIKEIRDGKRELGPLRRFGRRGVTLGPTTPTGTGDNTVGRVGEPAPGQPDAQDDPYSNRAQRNAPPVKS*
Ga0132256_1019176291	3300015372	Arabidopsis Rhizosphere	PKGREVYAMSFSLLALQWPDLSWGIVIALALAALLCVPYLIKEIRDGKANFGPLKRLRRGKVVLGPQTPTGASDVNPGRIGDPTPGQLEGQADPYGPRAQRNAPPIQS*
Ga0132256_1032827561	3300015372	Arabidopsis Rhizosphere	SVAANIKRCLMSEVTVAILIAVALAALICVPYLIKEISDGKREFGPLRRLGRNRVAVGPETPTGASDYNPGRAGDPAPGQPDAQADPYDARAQRKAPPVKS*
Ga0132257_1021063631	3300015373	Arabidopsis Rhizosphere	MSLYALQWNGLTIGIVIALALAAIFWIPYLIKEIRDGKGELGPMRMFRRGKVVLGPPTPVGAGDNHPGRRGDPAPGQPDGQA
Ga0190266_104694611	3300017965	Soil	MSDMTVAILIALGLAVLFGVPYLMKEIRDGKREFGPLRRLGGTRITEGPATPTGASDTNPGRRGDPAPGQPDAQADPYDARAQRNSPPVKS
Ga0184632_102774872	3300018075	Groundwater Sediment	FQWNELSFGILIALALAAIFWIPYLIKEIRDGKRSLGPLRMFRRGHVVLGPSTPSGAGDNNPGRRGDPAPGQPDAQADPYSDRAQRNGPPIQS
Ga0184625_104764792	3300018081	Groundwater Sediment	MPSNLIWAIVIALVLASALLIPFLIKEIRDGKAEFGPLRRFARGKVVLGPQTPTGAGDVNPGRRGDPAPGQPDGQADPYGPQAQRNGPSIQS
Ga0190270_112336591	3300018469	Soil	MPVLLYAVQWSELSIGILIALSLAAVFLVPYLIKEVRDGKGELGPMRIFRRGKVVLGPSTPVGAGDNNPGTRGSPAPGQPDAQGDPYGERAQRSGPPIQS
Ga0190270_118854811	3300018469	Soil	MPVSLFALEWNGLSFGILIALMLAAVFWIPYLIKEIRDGKRELGPLRMFRRGHVVLGPPTPTGAGDNHPGRRGDPAPGQADAQADPYSERAQRNGPPIQS
Ga0190274_100347161	3300018476	Soil	MPVLLYAVQWSELSIGILIALSLAAVFLVPYLIKEVRDGKGELGPMRIFRRGKVVLGPATPVGAGDNNPGTRGSPAPGQPDAQGDPYGERAQRSGPPIQS
Ga0190274_112453802	3300018476	Soil	MSDMTIAILIALALAAVFWIPYLTKEIKDGKREFGPLRRLERNRVAAGPATPTGASDNNPGRRGDPAPGQPDGQADPYDSRAQRNAPQVKS
Ga0180116_13585952	3300019229	Groundwater Sediment	VMPVSLFAFQWTELSFGILIALALAAVFMIPYLIKEIRDGKGELGPMRIFRRGRVILGPSTPVGAGDNNPGTRGSPAPGQPDAQGDPYGERAQRNGPPIQS
Ga0180112_13705312	3300019238	Groundwater Sediment	SFGILIALALAAVFMIPYLIKEIRDGKGELGPMRIFRRGRVILGPSTPVGAGDNNPGTRGSPAPGQPDAQGDPYGERAQRNGPPIQS
Ga0180115_13147142	3300019257	Groundwater Sediment	PVSLFAFQWTELSFGILIALALAAVFMIPYLIKEIRDGKGELGPMRIFRRGRVILGPSTPVGAGDNNPGTRGSPAPGQPDAQGDPYGERAQRNGPPIQS
Ga0173479_100082652	3300019362	Soil	MSMPLYALQWNGLSIGIVIALSLAAIFWIPYLIKEIRDGKGELGPMRMFRRGKVVLGPPTPVGAGDNHPGRRGDPAPGQPDGQADPYSVRAQRSGPPIQS
Ga0193751_11977041	3300019888	Soil	MSFSLLALQWTELGFGLAVVIALAAVLLVPYLIKEIRGGKRELGPLRRLGRDKVTLGPPTPAGAGDNNPGRRGDPAPGQPDGQSDPY
Ga0210380_101677551	3300021082	Groundwater Sediment	MSEATMAILIAVVLAAFFLVPYLTKEIRDGKKEFGPLRRLGRNKVTAGPATPTGAGDFNPGRAGDPAPGQPDAQADPYDSRAQRNAPPVKS
Ga0210393_100457454	3300021401	Soil	MSFSLLALQWTELSFGLAVVIALAAVLLVPYLIKEIRGGKRELGPLRRLGRDKVTLGPQTPVGAGDNNPGRRGDPAPGQPDGQPDPYGPRAQRNAPPIKS
Ga0210394_114276011	3300021420	Soil	MSFSLLALQWTELGFGLAVVIALAAVLLVPYLIKEIRGGKRELGPLRRLGRDKVTLGPPTPAGAGDNNPGRRGDPAPGQPDGQSDPYGARAQRNAPPIKS
Ga0222625_17334802	3300022195	Groundwater Sediment	VFAFQWNELSFGILIALALAAIFWIPYLIKEIRDGKRQLGPLRMFRRGHVVLGPDTPTGAGDNIPGRRGDPAPGQPDAQADPYSERAQRNGPPIQS
Ga0207646_101875982	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	MPEPLFAFQWDELSFGILIALALAAIFWIPYLIKEIRDGKRQLGPLRMFRRGHVVLGPQTPSGAGDNNPGRRGDPAPGQPDAQADPYSDRAQRSGPPIQS
Ga0207646_104222923	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	MFSLLLELQWTDVGLGVVVVLILTAILLIPFLAQEIREGKREFGPLRRLRGGKVVLGPQTPTGAGDYNPGRAGDPAPGQPDAQADPYGRRAQRNAPPIRS
Ga0207646_105465931	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	MFAWLIALQWTGLSSGILIAIALMVLLCVPYLIKEIRSGKRELGPLRRLWRGKVILGPPTPSGSGDNNPGRRGDRAPGQPDAQADPYGARAQRNAPPIQS
Ga0207650_108202711	3300025925	Switchgrass Rhizosphere	MEAPVLRSHAWSLRVVIGAHSGMSVAVHITGCVMSDMTIAILIALALAAVFWIPYLMKEIRDGKREFGPLRRLERNRVAAGPATPTGASDNNPGRRGDPAPGQPDGQADPYDSRAQRNAPPVKS
Ga0207659_105962451	3300025926	Miscanthus Rhizosphere	MSDMTIAILIALALAAAFWIPYLTKEIKDGKREFGPLRRLERNRVAAGPATPTGASDNNPGRRGDPAPGQPDGQADPYDAHAQRNAPPVKS
Ga0207659_106629301	3300025926	Miscanthus Rhizosphere	MSDMTIAILIALALAAVFWIPYLIKEIKDGKREFGPLRRLERNRVAAGPATPTGASDNNPGRRGDPAPGQPDGQADPYDSRAQRNAPPVKS
Ga0207669_101094302	3300025937	Miscanthus Rhizosphere	SVSSVVADSGTSVAADIKGCLMSDMTIAILIALALAAVFWIPYLIKEIKDGKREFGPLRRLERNRVAAGPATPTGASDNNPGRRGDPAPGQPDGQADPYDSRAQRNAPPVKS
Ga0207668_118974901	3300025972	Switchgrass Rhizosphere	VVADSGTSVAADIAGCLMSDMTIAILIALALAAVFWIPYLIKEIKDGKREFGPLRRLERNRVAAGPATPTGASDNNPGRRGDPAPGQPDGQADPYDSRAQRNAPPV
Ga0207648_117066682	3300026089	Miscanthus Rhizosphere	MLVSLIALQWTYLTTAILVAVALATFLLVPFLIEEIRRGKKDLGPLRKFSHGTVVLGPESPSGAGDNQPGRRGDPAPGQPDAQADPYDAQAQRNAPPIKS
Ga0247825_100162175	3300028812	Soil	MTATELNIGILIAVALAALLWIPYFIKEIRDGKRDFGPLRRLRRDRVTVGPTTPSGAADINPGRTGDPAPGQPDAQADPYSDRAQRNAPRVKS
Ga0308309_108287341	3300028906	Soil	MSFSLLALQWTELSFGLLVVIALAAVLLVPYLIKEIRGGKRELGPLRRLGRDKVILGSSTPIGAGDNNPGRRGDPAPGQPDGQPDPYGARAQRNAPPIKS
Ga0308189_102394241	3300031058	Soil	MGESLLALQWNELSLGLIISIALAVILWVPYLIKEIRDGKREFGPLRRLVRGRVTVGPQTPIGAADNNPGRRGDPAPGQPDGQADPYSARAQRNAPPIQS
Ga0308204_102294911	3300031092	Soil	MLLAFEWTGLSVGIVVVIVVAAAFLVPYLIKEIRDGKAELGPLRRLTRGKVVPGPVTPTGAGDNNPGRRGDPAPGQPDAQADPYGPRAQRNAPPIKS
Ga0308204_103322761	3300031092	Soil	LNPLLALEWTELSLGILISITLAALLWIPYLIKEIRDGKRELGPLRRLYRGRVIPGPPTPVGAGDNKPGRPGDPAPGQPDGQADPYSAGAQRNAPPVKS
Ga0307499_101484191	3300031184	Soil	MSISLYALQWNGLSIGIVIALSLAAIFWIPYLIKEIRDGKGELGPMRMFRRGKVVLGPSTPVGAGDNHPGRRGDPAPGQPDGQADPYSDRAQRSGPPIQS
Ga0307497_101719531	3300031226	Soil	VTLYALQLTGLTYGILIALALTLVLLVPFLIKEIRDGKRELGPLRRFGGHGVTLGPTTPTGTGDNTVGRRGEPAPGQPDAQDDPYSTRAQRNAPPVKS
Ga0310813_103277082	3300031716	Soil	MLSNLSWGIVIALVLASALLIPYLIKEIRDGKAEFGPLRRFVRGKVVLGPQTPTGAGDVNPGRPGDPAPGQPDAQADPYGPRAQHNAPSIQS
Ga0307468_1013111842	3300031740	Hardwood Forest Soil	MPVSLFAFQWNELSFGILIALTLAAIFWIPYMIKEIRDGKRELGPLRMFRRGHVVLGPQTPSGAGDNHPGRRGDPAPGQPDGQADPYSERAQRDGPPVKS
Ga0310893_100340611	3300031892	Soil	RVTDSGTSVAADITTCVMSDMTIAILIALALAAAFWIPYLTKEIKDGKREFGPLRRLERNRVAAGPATPTGASDNNPGRRGDPAPGQPDGQADPYDAHAQRNAPPVKS
Ga0310901_101153481	3300031940	Soil	MPLYALQWNGLSIGIVIALSLAAIFWIPYLIKEIRDGKGELGPMRMFRRGKVVLGPPTPVGAGDNHPGRRGDPAPGQPDGQADPYSDRAQRSGPPIQS
Ga0326597_108124682	3300031965	Soil	MSELSLAILIALALAAAFWIPYLIKEIRDGKREFGPLRRLGRDRITLGPTTPSGASDFNPGRPGDPAPGQPDAQADPYDERAQRKAPPVKS
Ga0307416_1013442922	3300032002	Rhizosphere	MSATDLGIGILIALALAALFWIPYLFKEIRDGKREFGPLRRLGKDRVALGPPTPTGTGDFNPGRVGDPAPGQAEAQADPYDARAQRKAPPVKS
Ga0310902_106441031	3300032012	Soil	AADITRCVMSDMTIAILIALALAAAFWIPYLTKEIKDGKREFGPLRRLERNRVAAGPATPTGASDNNPGRRGDPAPGQPDGQADPYDAHAQRNAPPVKS
Ga0310906_101498082	3300032013	Soil	MSDMTIAILIALALAAAFWIPYLTKEIKDGKREFGPLRQLERNRVAAGPATPTGASDNNPGRRGDPAPGQPDGQADPYDAHAQRNAPPVKS
Ga0310890_100672972	3300032075	Soil	GIVIALSLAAIFWIPYLIKEIRDGKGELGPMRMFRRGKVVLGPPTPVGAGDNHPGRRGDPAPGQPDGQADPYSDRAQRSGPPIQS
Ga0310896_101651341	3300032211	Soil	MSMPLYALQWNGLSIGIVIALSLAAIFWIPYLIKEIRDGKGELGPMRMFRRGKVVLGPPTPVGAGDNHPGRRGDPAPGQPDGQADPYSDRAQRSG
Ga0370495_0009068_1301_1603	3300034257	Untreated Peat Soil	MSVSLYAVQWPELSIGILIALALVAIFGIPYLIKEIRDGKRELGPMRVFRRGKVLLGPVTPVGAGDNNPGTIGSPAPGQPDGQSDPYGDRAQRNGPPVQS

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F073782

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences