| Basic Information | |
|---|---|
| Family ID | F073779 |
| Family Type | Metagenome / Metatranscriptome |
| Number of Sequences | 120 |
| Average Sequence Length | 44 residues |
| Representative Sequence | LIEGRKLYKAGADGERQYLTSEEIDAERLNAKRDIDTICNSPT |
| Number of Associated Samples | 104 |
| Number of Associated Scaffolds | 120 |
| Quality Assessment | |
|---|---|
| Transcriptomic Evidence | Yes |
| Most common taxonomic group | Unclassified |
| % of genes with valid RBS motifs | 2.50 % |
| % of genes near scaffold ends (potentially truncated) | 97.50 % |
| % of genes from short scaffolds (< 2000 bps) | 92.50 % |
| Associated GOLD sequencing projects | 101 |
| AlphaFold2 3D model prediction | Yes |
| 3D model pTM-score | 0.54 |
| Hidden Markov Model |
|---|
| Powered by Skylign |
| Most Common Taxonomy | |
|---|---|
| Group | Unclassified (65.000 % of family members) |
| NCBI Taxonomy ID | N/A |
| Taxonomy | N/A |
| Most Common Ecosystem | |
|---|---|
| GOLD Ecosystem | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (16.667 % of family members) |
| Environment Ontology (ENVO) | Unclassified (22.500 % of family members) |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Soil (non-saline) (45.000 % of family members) |
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| Predicted Topology & Secondary Structure | |||||
|---|---|---|---|---|---|
| Classification: | Globular | Signal Peptide: | No | Secondary Structure distribution: | α-helix: 26.76% β-sheet: 8.45% Coil/Unstructured: 64.79% | Feature Viewer |
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| Powered by Feature Viewer | |||||
| Structure Viewer | |
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| Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100 | pTM-score: 0.54 |
| Powered by PDBe Molstar | |
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| Pfam ID | Name | % Frequency in 120 Family Scaffolds |
|---|---|---|
| PF03446 | NAD_binding_2 | 65.00 |
| PF14833 | NAD_binding_11 | 19.17 |
| PF01379 | Porphobil_deam | 7.50 |
| PF03900 | Porphobil_deamC | 2.50 |
| PF01656 | CbiA | 0.83 |
| PF00441 | Acyl-CoA_dh_1 | 0.83 |
| PF01678 | DAP_epimerase | 0.83 |
| PF00521 | DNA_topoisoIV | 0.83 |
| PF02602 | HEM4 | 0.83 |
| PF03073 | TspO_MBR | 0.83 |
| PF13511 | DUF4124 | 0.83 |
| COG ID | Name | Functional Category | % Frequency in 120 Family Scaffolds |
|---|---|---|---|
| COG0181 | Porphobilinogen deaminase | Coenzyme transport and metabolism [H] | 10.00 |
| COG0188 | DNA gyrase/topoisomerase IV, subunit A | Replication, recombination and repair [L] | 0.83 |
| COG0253 | Diaminopimelate epimerase | Amino acid transport and metabolism [E] | 0.83 |
| COG1587 | Uroporphyrinogen-III synthase | Coenzyme transport and metabolism [H] | 0.83 |
| COG1960 | Acyl-CoA dehydrogenase related to the alkylation response protein AidB | Lipid transport and metabolism [I] | 0.83 |
| COG3476 | Tryptophan-rich sensory protein TspO/CrtK (mitochondrial benzodiazepine receptor homolog) | Signal transduction mechanisms [T] | 0.83 |
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| Name | Rank | Taxonomy | Distribution |
| Unclassified | root | N/A | 65.00 % |
| All Organisms | root | All Organisms | 35.00 % |
| Visualization |
|---|
| Powered by ApexCharts |
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| Habitat | Taxonomy | Distribution |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil | 16.67% |
| Vadose Zone Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil | 10.83% |
| Forest Soil | Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil | 8.33% |
| Palsa | Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa | 8.33% |
| Host-Associated | Host-Associated → Plants → Peat Moss → Unclassified → Unclassified → Host-Associated | 8.33% |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil | 7.50% |
| Bog | Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog | 5.83% |
| Bog Forest Soil | Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil | 4.17% |
| Peatland | Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland | 3.33% |
| Bog | Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog | 3.33% |
| Watersheds | Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds | 3.33% |
| Peatland | Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland | 2.50% |
| Glacier Forefield Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil | 2.50% |
| Peatlands Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil | 2.50% |
| Soil | Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil | 1.67% |
| Bog | Environmental → Terrestrial → Soil → Wetlands → Permafrost → Bog | 1.67% |
| Soil | Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil | 1.67% |
| Freshwater | Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater | 0.83% |
| Surface Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil | 0.83% |
| Arctic Peat Soil | Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil | 0.83% |
| Hardwood Forest Soil | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil | 0.83% |
| Bog Forest Soil | Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil | 0.83% |
| Thawing Permafrost | Environmental → Terrestrial → Soil → Wetlands → Permafrost → Thawing Permafrost | 0.83% |
| Soil | Environmental → Terrestrial → Soil → Wetlands → Permafrost → Soil | 0.83% |
| Soil | Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil | 0.83% |
| Fen | Environmental → Terrestrial → Peat → Unclassified → Unclassified → Fen | 0.83% |
| Visualization |
|---|
| Powered by ApexCharts |
| Taxon OID | Sample Name | Habitat Type | IMG/M Link |
|---|---|---|---|
| 3300001593 | Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M2 | Environmental | Open in IMG/M |
| 3300002245 | Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027) | Environmental | Open in IMG/M |
| 3300003505 | Forest soil microbial communities from Harvard Forest LTER, USA - Combined assembly of forest soil metaG samples (ASSEMBLY_DATE=20140924) | Environmental | Open in IMG/M |
| 3300004091 | Coassembly of ECP14_OM1, ECP14_OM2, ECP14_OM3 | Environmental | Open in IMG/M |
| 3300004092 | Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3, ECP14_OM1, ECP14_OM2, ECP14_OM3 | Environmental | Open in IMG/M |
| 3300005537 | Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen01_05102014_R1 | Environmental | Open in IMG/M |
| 3300005610 | Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3 | Environmental | Open in IMG/M |
| 3300006086 | Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2013 | Environmental | Open in IMG/M |
| 3300006102 | Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2013 | Environmental | Open in IMG/M |
| 3300006176 | Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5 | Environmental | Open in IMG/M |
| 3300009088 | Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG | Environmental | Open in IMG/M |
| 3300009089 | Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG | Environmental | Open in IMG/M |
| 3300009500 | Host-associated microbial communities from peat moss isolated from Minnesota, USA - S1T2_Fc - Sphagnum magellanicum MG | Host-Associated | Open in IMG/M |
| 3300009510 | Host-associated microbial communities from peat moss isolated from Minnesota, USA - S1T2_Fd - Sphagnum fallax MG | Host-Associated | Open in IMG/M |
| 3300009520 | Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_1_NS metaG | Environmental | Open in IMG/M |
| 3300009633 | Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_17_10 | Environmental | Open in IMG/M |
| 3300009665 | Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_20_10 | Environmental | Open in IMG/M |
| 3300009697 | Host-associated microbial communities from peat moss isolated from Minnesota, USA - S1T2_Fd - Sphagnum magellanicum MG | Host-Associated | Open in IMG/M |
| 3300009701 | Host-associated microbial communities from peat moss isolated from Minnesota, USA - S1T2_Fc - Sphagnum fallax MG | Host-Associated | Open in IMG/M |
| 3300009709 | Host-associated microbial communities from peat moss isolated from Minnesota, USA - S1T2_Fb - Sphagnum magellanicum MG | Host-Associated | Open in IMG/M |
| 3300009787 | Host-associated microbial communities from peat moss isolated from Minnesota, USA - S1T2_Fa - Sphagnum fallax MG | Host-Associated | Open in IMG/M |
| 3300010341 | Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM2 | Environmental | Open in IMG/M |
| 3300010379 | Sb_50d combined assembly | Environmental | Open in IMG/M |
| 3300012205 | Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG | Environmental | Open in IMG/M |
| 3300012362 | Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaG | Environmental | Open in IMG/M |
| 3300012363 | Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4A metaG | Environmental | Open in IMG/M |
| 3300012685 | Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaG | Environmental | Open in IMG/M |
| 3300012927 | Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Illumina Assembly) | Environmental | Open in IMG/M |
| 3300012930 | Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (Illumina Assembly) | Environmental | Open in IMG/M |
| 3300012944 | Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Illumina Assembly) | Environmental | Open in IMG/M |
| 3300014164 | Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin11_30_metaG | Environmental | Open in IMG/M |
| 3300014165 | Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin05_30_metaG | Environmental | Open in IMG/M |
| 3300014169 | Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin11_10_metaG | Environmental | Open in IMG/M |
| 3300014654 | Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin06_10_metaG | Environmental | Open in IMG/M |
| 3300014838 | Permafrost microbial communities from Stordalen Mire, Sweden - 812S3M metaG (Illumina Assembly) | Environmental | Open in IMG/M |
| 3300015160 | Arctic soil microbial communities from a glacier forefield, Russell Glacier, Kangerlussuaq, Greenland (Sample G7C, Adjacent to main proglacial river, mid transect (Watson river)) | Environmental | Open in IMG/M |
| 3300015167 | Arctic soil microbial communities from a glacier forefield, Storglaci?ren, Tarfala, Sweden (Sample st-11b, vegetated hydrological feature) | Environmental | Open in IMG/M |
| 3300015206 | Arctic soil microbial communities from a glacier forefield, Russell Glacier, Kangerlussuaq, Greenland (Sample G8B, Adjacent to main proglacial river, end of transect (Watson river)) | Environmental | Open in IMG/M |
| 3300015264 | Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Hybrid Assembly) | Environmental | Open in IMG/M |
| 3300017946 | Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_19_10 | Environmental | Open in IMG/M |
| 3300018030 | Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_13_100 | Environmental | Open in IMG/M |
| 3300018043 | Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_7_10 | Environmental | Open in IMG/M |
| 3300018047 | Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_10_10 | Environmental | Open in IMG/M |
| 3300019887 | Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1c2 | Environmental | Open in IMG/M |
| 3300020021 | Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2c1 | Environmental | Open in IMG/M |
| 3300020034 | Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H1c2 | Environmental | Open in IMG/M |
| 3300020061 | Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U2c1 | Environmental | Open in IMG/M |
| 3300020062 | Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2a1 | Environmental | Open in IMG/M |
| 3300020580 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M | Environmental | Open in IMG/M |
| 3300021086 | Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_1_08_16fungal (Illumina Assembly) | Environmental | Open in IMG/M |
| 3300021168 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-M | Environmental | Open in IMG/M |
| 3300021170 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-M | Environmental | Open in IMG/M |
| 3300021178 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-M | Environmental | Open in IMG/M |
| 3300021180 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-O | Environmental | Open in IMG/M |
| 3300021406 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-O | Environmental | Open in IMG/M |
| 3300021407 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-O | Environmental | Open in IMG/M |
| 3300021411 | Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H3c2 | Environmental | Open in IMG/M |
| 3300021432 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M | Environmental | Open in IMG/M |
| 3300021475 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-O | Environmental | Open in IMG/M |
| 3300021479 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-M | Environmental | Open in IMG/M |
| 3300021559 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-M | Environmental | Open in IMG/M |
| 3300022504 | Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-2-M (Metagenome Metatranscriptome) (v2) | Environmental | Open in IMG/M |
| 3300022850 | Peat soil microbial communities from Stordalen Mire, Sweden - 717 S2 1-5 | Environmental | Open in IMG/M |
| 3300024283 | Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK11 | Environmental | Open in IMG/M |
| 3300025627 | Arctic peat soil from Barrow, Alaska - NGEE Surface sample F53-1 deep-092012 (SPAdes) | Environmental | Open in IMG/M |
| 3300026223 | Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Permafrost soil replicate 2 DNA2013-190 (SPAdes) | Environmental | Open in IMG/M |
| 3300026499 | Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NR-06-B | Environmental | Open in IMG/M |
| 3300026515 | Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NL-03-A | Environmental | Open in IMG/M |
| 3300026557 | Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal | Environmental | Open in IMG/M |
| 3300027158 | Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF011 (SPAdes) | Environmental | Open in IMG/M |
| 3300027176 | Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM1_O1 (SPAdes) | Environmental | Open in IMG/M |
| 3300027545 | Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O3 (SPAdes) | Environmental | Open in IMG/M |
| 3300027633 | Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA Ref_M1 (SPAdes) | Environmental | Open in IMG/M |
| 3300027634 | Thawing permafrost microbial communities from the Arctic, studying carbon transformations - Permafrost 812S1M | Environmental | Open in IMG/M |
| 3300027676 | Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_O3 (SPAdes) | Environmental | Open in IMG/M |
| 3300027684 | Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM1H0_M2 (SPAdes) | Environmental | Open in IMG/M |
| 3300027692 | Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_O1 (SPAdes) | Environmental | Open in IMG/M |
| 3300027795 | Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP14_OM3 (SPAdes) | Environmental | Open in IMG/M |
| 3300027807 | Host-associated microbial communities from peat moss isolated from Minnesota, USA - S1T2_Fd - Sphagnum fallax MG (SPAdes) | Host-Associated | Open in IMG/M |
| 3300027829 | Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP14_OM1 (SPAdes) | Environmental | Open in IMG/M |
| 3300027911 | Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2012 (SPAdes) | Environmental | Open in IMG/M |
| 3300028775 | Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_N2_2 | Environmental | Open in IMG/M |
| 3300028808 | Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_N1_2 | Environmental | Open in IMG/M |
| 3300028813 | Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Bog_N3_3 | Environmental | Open in IMG/M |
| 3300029882 | III_Palsa_E1 coassembly | Environmental | Open in IMG/M |
| 3300029919 | Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Bog_E1_2 | Environmental | Open in IMG/M |
| 3300029922 | III_Fen_E1 coassembly | Environmental | Open in IMG/M |
| 3300029951 | III_Palsa_N1 coassembly | Environmental | Open in IMG/M |
| 3300029953 | II_Bog_E3 coassembly | Environmental | Open in IMG/M |
| 3300029999 | I_Palsa_E3 coassembly | Environmental | Open in IMG/M |
| 3300030007 | I_Palsa_E1 coassembly | Environmental | Open in IMG/M |
| 3300030020 | II_Bog_N1 coassembly | Environmental | Open in IMG/M |
| 3300030494 | Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_3_AS metaG (v2) | Environmental | Open in IMG/M |
| 3300030618 | II_Palsa_E3 coassembly | Environmental | Open in IMG/M |
| 3300030626 | Metatranscriptome of forest soil microbial communities from Boreal Montmorency Forest, Quebec, Canada - FO410-VDE110SO (Eukaryote Community Metatranscriptome) | Environmental | Open in IMG/M |
| 3300030737 | Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_N1_2 | Environmental | Open in IMG/M |
| 3300030906 | Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_N2_3 | Environmental | Open in IMG/M |
| 3300031233 | Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_E3_2 | Environmental | Open in IMG/M |
| 3300031708 | FICUS49499 Metagenome Czech Republic combined assembly | Environmental | Open in IMG/M |
| 3300031788 | Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Bog_T0_2 | Environmental | Open in IMG/M |
| 3300031813 | Freshwater microbial communities from Trout Bog Lake, Wisconsin, USA - 1anoA | Environmental | Open in IMG/M |
| 3300032180 | Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515 | Environmental | Open in IMG/M |
| 3300032896 | Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.4 | Environmental | Open in IMG/M |
| 3300033134 | Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.2 | Environmental | Open in IMG/M |
| Geographical Distribution | |
|---|---|
| Zoom: | Powered by OpenStreetMap |
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| Protein ID | Sample Taxon ID | Habitat | Sequence |
| JGI12635J15846_105545052 | 3300001593 | Forest Soil | DAQERYKKLIEGRRLFKTGADGERQYLTSEEIDSERLNAKRDIDATCNSPT* |
| JGIcombinedJ26739_1010227222 | 3300002245 | Forest Soil | DAQERYKKLIEGRHIYKTGDNGERVYLSSQEIDEERVNAKKDIDDTCNSAT* |
| JGIcombinedJ51221_102936941 | 3300003505 | Forest Soil | LLEGRHLYKVGDNGERQYLTSDEIDSERLTAKRDVDESCNGTT* |
| Ga0062387_1012542552 | 3300004091 | Bog Forest Soil | RYKKLIEGRRIYKTGPDGERQYMTSDEIDSERLNAKRDIDIICNSTT* |
| Ga0062389_1039960562 | 3300004092 | Bog Forest Soil | KQCADAQAQYKKLIEGRRQYKVGADGERQYLTAEEIDSERLNAKREVDAACNSPT* |
| Ga0070730_105723382 | 3300005537 | Surface Soil | YKMGPDGERVFMSSDEIDTERMNAKRDVDSICNSTT* |
| Ga0070763_109281531 | 3300005610 | Soil | YKKLIEGRRQYKLGADGERQYLTSEEIDAQRLNAKRDVDTICNSPT* |
| Ga0075019_110727512 | 3300006086 | Watersheds | YKKLIEGRRLFKPGTDGERQYLTSEEIDSQRMNAKRDIDAICNSPT* |
| Ga0075019_110986302 | 3300006086 | Watersheds | AQDRYKKLIEGRRLYKTGPDGERQYMNSQEIDTERVNAKRDIDAICNSAT* |
| Ga0075015_1000525831 | 3300006102 | Watersheds | AQERYKKLIEGRRIYKAGPDGERQYMSSQEIDTERLNAKRDIDTICNSAT* |
| Ga0070765_1018083842 | 3300006176 | Soil | KAGADGERQYLTSEEIDAERLNAKRDLDTVCNSPT* |
| Ga0099830_108310002 | 3300009088 | Vadose Zone Soil | GRYKQLIEGRRLYKTGADGGRQYLTSEEIDSERLSAKRDVDATCNSPT* |
| Ga0099828_118830041 | 3300009089 | Vadose Zone Soil | AQARYKSLIEGRRLYKSGTDGERQYLTSEEIDAERLNAKREIDNICNSPT* |
| Ga0116229_109675321 | 3300009500 | Host-Associated | TGDDGEKQFLTSEQIDTERLNAKRDVDSVCTPTS* |
| Ga0116229_112794451 | 3300009500 | Host-Associated | IEGRRLYKTGTNGEREYLSSEEIDKERLDAKSDVDTVCNSTT* |
| Ga0116230_100032961 | 3300009510 | Host-Associated | IEGRRLYKVGADGEREYLNSDEIDAQRLAAKQDVDTVCNSPT* |
| Ga0116214_14320732 | 3300009520 | Peatlands Soil | LYKTGPDGERQYLTSDEIDAERLNAKRELDATCNSS* |
| Ga0116129_10934761 | 3300009633 | Peatland | LIDGRHLYTTGPDGERQYLTSDQIDAQRLTAKQDVDAACDSST* |
| Ga0116129_12387752 | 3300009633 | Peatland | GRHLYTTGPDGERQYLTSDQIDAQRLTAKQDVDTSCDSST* |
| Ga0116135_14878042 | 3300009665 | Peatland | YKKLIEGRRLYKTGDNGERQYLTSEEIDSERVNAKRDIDEICNSAS* |
| Ga0116231_101066751 | 3300009697 | Host-Associated | KQCSDAQERYKKLVETRKLYKTGPDGERQYLSSDEIDAERLAAKQDVDQICNSPT* |
| Ga0116228_103089482 | 3300009701 | Host-Associated | AQARYKQLIEGRKLYKTGPDGERQYLTSEEIDTERLSAKHDVDTICNSPT* |
| Ga0116227_111956722 | 3300009709 | Host-Associated | ARYKQLIEGRKLYKTGPDGERQYLTSEEIDTERLSAKHDVDTICNSPT* |
| Ga0116227_112566072 | 3300009709 | Host-Associated | EGRHLYKTGDDGEKQFLTSEQIDTERLNAKRDVDSVCTPTS* |
| Ga0116227_113890721 | 3300009709 | Host-Associated | KTGADGERQYLTSEQIDQERIDAKKAIDEICNSPT* |
| Ga0116226_118328072 | 3300009787 | Host-Associated | QANYKKLIEGRRIYKTGADGERQYLTSDQIDTERVNAKKEVDAICNSPT* |
| Ga0074045_106880821 | 3300010341 | Bog Forest Soil | DAQERYKKLIEGRRLYKTGPDGERQYMTSQDIDTERLNAKRDIDSICNSPT* |
| Ga0136449_1025434082 | 3300010379 | Peatlands Soil | LYKTGPDGERQYLTSDEIDAERLNAKRDVDATCSSST* |
| Ga0137362_112250371 | 3300012205 | Vadose Zone Soil | KKLIEGRRLYKTGADGERQYLTSEEIDSERLNAKREIDATCNGA* |
| Ga0137361_109811591 | 3300012362 | Vadose Zone Soil | DAQARYKSLIEGRRLYKAGADGERQYLTSEEIDAERINAKRDIDAICNSPT* |
| Ga0137390_106191413 | 3300012363 | Vadose Zone Soil | LIEGRKLYKAGADGERQYLTSEEIDAERLNAKRDIDTICNS |
| Ga0137397_103391861 | 3300012685 | Vadose Zone Soil | YKTGANGERQYLTSEEIDSERLNAKREVDATCNSPT* |
| Ga0137416_104490991 | 3300012927 | Vadose Zone Soil | DRYKKLIEGRRLYKTGADGQRQYLTSEEIDSERLNAKREIDATCNGAT* |
| Ga0137407_100232126 | 3300012930 | Vadose Zone Soil | QYKLGTDGERQYLTSEEIDAQRLNAKREVDTVCNSPT* |
| Ga0137410_102404913 | 3300012944 | Vadose Zone Soil | YKTGADGERQYLTSQEIDSERVNAKRDIEATCNSPT* |
| Ga0181532_102434631 | 3300014164 | Bog | YKKLIEGRKLYKTGPDGERQYLTSDEIDAERLNAKRDVDATCSSST* |
| Ga0181523_100481934 | 3300014165 | Bog | KQCADAQDRYKKLIEGRKLYKTGPDGERQYLTSDEIDAERLNAKRDVDATCSSST* |
| Ga0181531_108526672 | 3300014169 | Bog | DHYKKVIEGRKLYKTGADGERQYLTSDEIDTERLNAKREVDATCNSST* |
| Ga0181525_106207541 | 3300014654 | Bog | ERYKKLIEGRHMYKTGDNGERVYLSSQEIDEERVNAKKDIDDICNSPS* |
| Ga0182030_103156973 | 3300014838 | Bog | EGRRLYKTGADGERQYLTSDEIDSERVNAKRDVDAICNSAT* |
| Ga0182030_115314761 | 3300014838 | Bog | TGDNGERQYLTSDEIDSERLNAKHDVDEICNSAT* |
| Ga0167642_10346122 | 3300015160 | Glacier Forefield Soil | ADAQARYKGLIEGRKLYKAGADGERQYLTSEEIDAERVNAKRELDTLCNSSS* |
| Ga0167661_10397711 | 3300015167 | Glacier Forefield Soil | TGANGEREYLTSEEIDSERVNAKRDVDAICNSPS* |
| Ga0167644_11696662 | 3300015206 | Glacier Forefield Soil | DAQDRYKKLIEGRRLYKTGPDGERQFMNSEEIDTERLNAKRDIDTICNSTT* |
| Ga0137403_101824783 | 3300015264 | Vadose Zone Soil | RRLYKNGPDGERQYMTSEEIDTERLNAKRDIDNICNSAT* |
| Ga0137403_107370671 | 3300015264 | Vadose Zone Soil | LIEGRKLYKAGADGERQYLTSEEIDAERLNAKRDIDTICNSPT* |
| Ga0187879_102352351 | 3300017946 | Peatland | KLIEGRRLYKTGDNGERQYLTSDEVNSERLNAKHDVDEICNSAT |
| Ga0187869_103197541 | 3300018030 | Peatland | EGRKLYKTGADGERQYLTSDEVDAERLSAKNDVDSLCNGTS |
| Ga0187887_102076792 | 3300018043 | Peatland | RYKKLIEGRKLYKLGADGERQYLTSEEIDSERVNAKHDVDSICNSAT |
| Ga0187859_101040481 | 3300018047 | Peatland | RDKQCADAQDRYKKLIEGRRLYKTGDNGERQYLTSDEVNSERLNAKHDVDEICNSAT |
| Ga0193729_10753771 | 3300019887 | Soil | RKLYKAGADGERQYLTSEEIDAERLNAKRDVDTICNSTT |
| Ga0193726_13833411 | 3300020021 | Soil | RYKKLIEGRRLYKTGPDGERQFMNSEEIDTERLNAKRDVDTICNSAT |
| Ga0193753_101962482 | 3300020034 | Soil | KPGPDGERQFMTSQEIDTERLNAKRDIDNICNSAT |
| Ga0193753_103012302 | 3300020034 | Soil | RLYKTGPDGERQFMNSEEIDTERLNAKRDIDTICNSTT |
| Ga0193716_10209151 | 3300020061 | Soil | RRLYKPGPDGERQFMTSAEIDTERLNAKRDIDNICNSAT |
| Ga0193724_10989902 | 3300020062 | Soil | EAQDRYKKLIEGRRLYKTGENGERQYLTSEEIDTQRLDAKRDVDATCNGTT |
| Ga0210403_106539521 | 3300020580 | Soil | GRRIYKPGPDGERQYMSSQEIDTERLNAKRDIDTICNSTT |
| Ga0179596_104070122 | 3300021086 | Vadose Zone Soil | YKSLIEGRSLYKSGTDGERQYLTSEEIDAERLNAKRDIDTICNSPT |
| Ga0210406_110887732 | 3300021168 | Soil | EGRRLFKAGADGERQYLTSEEIDSERLNAKREVDATCNSPT |
| Ga0210406_112390881 | 3300021168 | Soil | EAQERYRKLIEGRRLFKTGDNGERQYLSSEEIDTQRVDAKRDIDTICNSAT |
| Ga0210400_115200791 | 3300021170 | Soil | YKTGPDGERQFMNSEEIDTERLNAKQDVDTICNSTT |
| Ga0210408_114710231 | 3300021178 | Soil | DKQCAEAQERYKKLIEGRHLYKPGDNGERQYLTSEEIDSERVNAKRDIDAICNSAT |
| Ga0210396_105062132 | 3300021180 | Soil | LYKAGANGERQFLSSEEIDTERLNAKQEVDTICNSTT |
| Ga0210396_111895212 | 3300021180 | Soil | HLYKAGPDGERQYLTSEEIDSQRLSAKQDVDDACGGSN |
| Ga0210386_102852811 | 3300021406 | Soil | YKKLIEGRRLYKAGPDGERQFMTSEEIDTERLNAKRDVDTICNSAT |
| Ga0210383_114088881 | 3300021407 | Soil | YKKLIEGRRIYKPGPDGERQYMSSQEIDTERLNAKRDIDTICNSTT |
| Ga0193709_10580352 | 3300021411 | Soil | CTDAQERYKKLIEGRRLYKNGPDGERQYMTSEQIDTERLNAKRDIDNTCNSAT |
| Ga0210384_100987934 | 3300021432 | Soil | LIEGRRQYKLGADGERQYLTSEEIDAQRLNAKRDVDTICNSPT |
| Ga0210392_106224651 | 3300021475 | Soil | QDRYKKLIEGRHIYKTGPDGERQFMTSEEIDTERLNAKREVAGTCNSAT |
| Ga0210392_108546861 | 3300021475 | Soil | EGRRLYKAGADGERQYLTAEEIDSERLNAKREVDATCNSTT |
| Ga0210392_108889162 | 3300021475 | Soil | GRRLYKTGANGEREYLTSAEIDKERIDAKNDVDAICNSTT |
| Ga0210410_114610282 | 3300021479 | Soil | LYKTGPDGERQFMTSEEIDTERLNAKRDVDNICNSTT |
| Ga0210409_112861261 | 3300021559 | Soil | RKLYKIGPDGERQYMTSEQIDTERLNAKQDVDTICNSPT |
| Ga0242642_10045522 | 3300022504 | Soil | QARYKTLIEGRKLYKAGADGERQYLTSEEIDAERLNAKREIDAICYSPT |
| Ga0224552_10547741 | 3300022850 | Soil | RRLYKTGDNGERQYLTSDEIDSERLNAKHDVDEICNSAT |
| Ga0247670_11005531 | 3300024283 | Soil | LIEGRKLYKAGADGERQYLTSEEIDAERLNAKRDIDTICNSPT |
| Ga0208220_10444233 | 3300025627 | Arctic Peat Soil | KTGPDGERQFMNSEEIDTERLNAKRDVDTICNSST |
| Ga0209840_10812972 | 3300026223 | Soil | YKTGADGERQYLTSDEIDAERLNAKRDIDAICNSTT |
| Ga0257181_11000911 | 3300026499 | Soil | IEGRRLYKTGADGERQYLTSQEIDSERLNAKREADATCNSPT |
| Ga0257158_11292852 | 3300026515 | Soil | EGRRLFKTGDNGERQYLTSEEIDTQRLDAKRDIDAICNSAT |
| Ga0179587_102122391 | 3300026557 | Vadose Zone Soil | KTGADGERQYLTSEEIDSERLNAKREIDATCNGAT |
| Ga0208725_10187372 | 3300027158 | Forest Soil | ERYKKLIEGRHLYKTGDNGERVYLSSQEIDEERVNAKKDLDDVCNSAS |
| Ga0208992_10462831 | 3300027176 | Forest Soil | LIEGRRIYKSGPEGERQYMTSEEIDTERLNAKRDVDTICNSTT |
| Ga0209008_10079784 | 3300027545 | Forest Soil | YKTGPDGERQFMSSQEIDTERLNAKQDVDTICNSTT |
| Ga0208988_11743502 | 3300027633 | Forest Soil | RQGELIDGRRLYKTGADGERQYLSSQEIDSERLNAKREVDAICNSPT |
| Ga0209905_10191622 | 3300027634 | Thawing Permafrost | MCIRDSYKRLIEGRKLYKTGPDGERQYLTSEEIDSERVNAKRDVDSICNSPT |
| Ga0209333_11316632 | 3300027676 | Forest Soil | EKECADAKDRYQKLIEGRRLYKTGENGERQYLTSDEIDAERLSAKRDVDDICNSAT |
| Ga0209626_10122101 | 3300027684 | Forest Soil | IYKTGPDGERQFMTSEEIDTERLNAKREIDNTCNSTT |
| Ga0209530_11002031 | 3300027692 | Forest Soil | EAQDRYKKLIEGRKLYKTGPDGERQFMNSDEIDTERLNAKKDVDTICNSTT |
| Ga0209139_103441182 | 3300027795 | Bog Forest Soil | ADAQDHYKKLIEGRKLYKTGADGERQYLTSDEIDTERLNAKREVDATCNSAT |
| Ga0209208_101885631 | 3300027807 | Host-Associated | RLYKVGADGEREYLNSDEIDAQRLAAKQDVDTVCNSPT |
| Ga0209773_102392672 | 3300027829 | Bog Forest Soil | RRLYKTGADGERQYLTSDEIDSERLNAKREVDATCNSST |
| Ga0209773_103920311 | 3300027829 | Bog Forest Soil | RYKKLIEGRRIYKTGPDGERQYMTSDEIDSERLNAKRDIDIICNSTT |
| Ga0209698_106532822 | 3300027911 | Watersheds | KAGPDGERQYMNSQEIDTERLNAKRDIDTICNSST |
| Ga0302231_104624172 | 3300028775 | Palsa | YKKLIEGRKIYKTGADGERQYLTSDEIDSERINAKREIDTVCNSTT |
| Ga0302228_101050263 | 3300028808 | Palsa | IYKTGPDGERQYMTSDEIDNERLNAKRDIDTICNSTT |
| Ga0302157_103602011 | 3300028813 | Bog | EAQERYKKDIEGRRLYKMGDNGERIYLTSEEIDAERLNAKQEVDAVCSSTS |
| Ga0311368_104082562 | 3300029882 | Palsa | QCTEAQDRYKKLIEGRRPYKLGADGARQYLTSEEIDTERLDAKQEVDSVCKSSS |
| Ga0302141_10655331 | 3300029919 | Bog | YRKSIEGRKLYRIGSDGEREYLTSEEIDAERLNAKRDVDTICNSQS |
| Ga0311363_109446821 | 3300029922 | Fen | TEAQDRYKKLVEGRRLYKTGENGEREFLTSDEIDTARINAKQELDAVCNPGN |
| Ga0311371_112976241 | 3300029951 | Palsa | CADAQERYKKLIEGRKIYKTGADGERQYLTSEEIDSERINAKQDIDTICNSAT |
| Ga0311343_113116382 | 3300029953 | Bog | IEGRKIYKTGADGERQYLSSEEIDSERVNAKRDIDTICNSPT |
| Ga0311339_119598862 | 3300029999 | Palsa | KLIEGRKIYKTGPDGERQYLTSDEIDSERINAKREIDTVCNSPT |
| Ga0311338_100547021 | 3300030007 | Palsa | TEAQERYKKLIEGRHIYKTGDNGERVYLSSQEIDQERLSAKQDINDTCNSPT |
| Ga0311344_103851521 | 3300030020 | Bog | YKTGADGERQYLSSEEIDSERVNAKRDIDTICNSPT |
| Ga0311344_104867112 | 3300030020 | Bog | HYKRLIEGRKLYKTGPDGEREYLTSDEIDAERINAKREVDSVCNGSS |
| Ga0311344_106318451 | 3300030020 | Bog | ERYKKLIEGRRLYKTGENGERQYLTSDEIDAERVNAKRDVDGICNSPT |
| Ga0310037_104326601 | 3300030494 | Peatlands Soil | YKAGPDGERQYLSSEEIDAERLSQKQEVDAVCNGTT |
| Ga0311354_116779441 | 3300030618 | Palsa | RIYTTGSDGERQYLTSDQIDTQRLNAKHDVDAICNSAN |
| Ga0210291_107238211 | 3300030626 | Soil | KKLIEGRKLYKTGADGERQYLTSDEIDTERLNAKREIDATCNSTT |
| Ga0302310_100241646 | 3300030737 | Palsa | GRRLYKTGPDGERQFMNSEEIDTERLNAKRDVDNICNSAT |
| Ga0302314_114907951 | 3300030906 | Palsa | EGRRIYKTGPDGERQYMTSDEIDNERLNAKRDIDTICNSTT |
| Ga0302307_102447072 | 3300031233 | Palsa | KTGPDGERQFMNSEEIDTERLNAKRDVDNICNSAT |
| Ga0310686_1139874542 | 3300031708 | Soil | LYKTGTDGEREYLSSEEIDSERLNAKADVDNTCNSST |
| Ga0310686_1171264521 | 3300031708 | Soil | RYKKLIEGRHIYKTGPDGERQYLTSDELDAQRLSAKQDVDAVCNSAT |
| Ga0302319_117527262 | 3300031788 | Bog | QDRYKKLIEGRHLYITGENGEKQFLTSEQIDTERLNAKRDVDSLCESG |
| Ga0316217_103451552 | 3300031813 | Freshwater | ERYKKLIEGRKLYKSGPDGERQYLSSAEIDSERVSAKQDVDSICGAAN |
| Ga0307471_1020388632 | 3300032180 | Hardwood Forest Soil | TEAQERYKKLIEGRKLYKTGPDGERQYMTSEQIDTERLNAKRDIDTICNSAT |
| Ga0335075_110497622 | 3300032896 | Soil | LYKLGENGERQYLTSDEIDSERMNAKREVDDICNSTT |
| Ga0335073_120121372 | 3300033134 | Soil | RHLYKTGENGERQYLSSEEIDSERLNAKRDVDETCNSST |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |