Metagenome / Metatranscriptome Family F073321

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

Select file to download:
Download

Overview

Basic Information
Family ID	F073321
Family Type	Metagenome / Metatranscriptome
Number of Sequences	120
Average Sequence Length	50 residues
Representative Sequence	AERFAGERLDRIEYEKSLQPSAKELREAGLAWIEHHLERRLMTRELLETT
Number of Associated Samples	90
Number of Associated Scaffolds	120

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	2.61 %
% of genes near scaffold ends (potentially truncated)	88.33 %
% of genes from short scaffolds (< 2000 bps)	85.00 %
Associated GOLD sequencing projects	80
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.47

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign

Most Common Taxonomy
Group	Bacteria (72.500 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil (46.667 % of family members)
Environment Ontology (ENVO)	Unclassified (44.167 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (46.667 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Select alignment to view:

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 44.87% β-sheet: 0.00% Coil/Unstructured: 55.13%
Feature Viewer

Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.47
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.47
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 120 Family Scaffolds
PF02091	tRNA-synt_2e	87.50
PF02092	tRNA_synt_2f	5.00
PF11967	RecO_N	1.67
PF05746	DALR_1	1.67
PF01326	PPDK_N	0.83
PF03739	LptF_LptG	0.83
PF00180	Iso_dh	0.83

COG ID	Name	Functional Category	% Frequency in 120 Family Scaffolds
COG0752	Glycyl-tRNA synthetase, alpha subunit	Translation, ribosomal structure and biogenesis [J]	87.50
COG0751	Glycyl-tRNA synthetase, beta subunit	Translation, ribosomal structure and biogenesis [J]	6.67
COG0018	Arginyl-tRNA synthetase	Translation, ribosomal structure and biogenesis [J]	1.67
COG0574	Phosphoenolpyruvate synthase/pyruvate phosphate dikinase	Carbohydrate transport and metabolism [G]	0.83
COG0795	Lipopolysaccharide export LptBFGC system, permease protein LptF	Cell wall/membrane/envelope biogenesis [M]	0.83

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	72.50 %
Unclassified	root	N/A	27.50 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	72.50 %
Unclassified	root	N/A	27.50 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	72.50 %
Unclassified	root	N/A	27.50 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	27.50 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	16.67 %
Bacteria incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	27.50 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	11.67 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	2.50 %
Bacteria candidate phyla	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	27.50 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	11.67 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.67 %
Candidatus Sumerlaeota	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Sumerlaeota	0.83 %
Acidobacteria bacterium RBG_13_68_16	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RBG_13_68_16	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	27.50 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	11.67 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.67 %
unclassified Candidatus Sumerlaeota	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Sumerlaeota → unclassified Candidatus Sumerlaeota	0.83 %
Acidobacteria bacterium RBG_13_68_16	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RBG_13_68_16	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	27.50 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.67 %
candidate division BRC1 bacterium ADurb.BinA364	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Sumerlaeota → unclassified Candidatus Sumerlaeota → candidate division BRC1 bacterium ADurb.BinA364	0.83 %
Acidobacterium	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidobacterium	0.83 %
Acidobacteria bacterium RBG_13_68_16	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RBG_13_68_16	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	27.50 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.67 %
unclassified Acidobacterium	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidobacterium → unclassified Acidobacterium	0.83 %
candidate division BRC1 bacterium ADurb.BinA364	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Sumerlaeota → unclassified Candidatus Sumerlaeota → candidate division BRC1 bacterium ADurb.BinA364	0.83 %
Acidobacteria bacterium RBG_13_68_16	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RBG_13_68_16	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	27.50 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.67 %
Acidobacterium sp.	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidobacterium → unclassified Acidobacterium → Acidobacterium sp.	0.83 %
candidate division BRC1 bacterium ADurb.BinA364	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Sumerlaeota → unclassified Candidatus Sumerlaeota → candidate division BRC1 bacterium ADurb.BinA364	0.83 %
Acidobacteria bacterium RBG_13_68_16	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RBG_13_68_16	0.83 %

Visualization

Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2170459010\|GIO7OMY02F2ES4	All Organisms → cellular organisms → Bacteria	520	Open in IMG/M
3300001162\|JGI12714J13572_1001810	Not Available	1041	Open in IMG/M
3300002560\|JGI25383J37093_10161560	Not Available	590	Open in IMG/M
3300002914\|JGI25617J43924_10088927	Not Available	1114	Open in IMG/M
3300002914\|JGI25617J43924_10129178	All Organisms → cellular organisms → Bacteria	884	Open in IMG/M
3300002914\|JGI25617J43924_10248278	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	601	Open in IMG/M
3300002914\|JGI25617J43924_10248653	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	601	Open in IMG/M
3300002916\|JGI25389J43894_1058733	Not Available	651	Open in IMG/M
3300002917\|JGI25616J43925_10144331	Not Available	955	Open in IMG/M
3300004101\|Ga0058896_1356827	All Organisms → cellular organisms → Bacteria	558	Open in IMG/M
3300005186\|Ga0066676_10176947	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1358	Open in IMG/M
3300005446\|Ga0066686_10617029	All Organisms → cellular organisms → Bacteria	737	Open in IMG/M
3300005576\|Ga0066708_10424596	All Organisms → cellular organisms → Bacteria	853	Open in IMG/M
3300006041\|Ga0075023_100382796	All Organisms → cellular organisms → Bacteria	604	Open in IMG/M
3300006086\|Ga0075019_10479703	All Organisms → cellular organisms → Bacteria	769	Open in IMG/M
3300006796\|Ga0066665_10386669	Not Available	1151	Open in IMG/M
3300007255\|Ga0099791_10076534	All Organisms → cellular organisms → Bacteria	1522	Open in IMG/M
3300007255\|Ga0099791_10297871	All Organisms → cellular organisms → Bacteria	769	Open in IMG/M
3300007265\|Ga0099794_10249248	All Organisms → cellular organisms → Bacteria	915	Open in IMG/M
3300009088\|Ga0099830_11189629	All Organisms → cellular organisms → Bacteria	633	Open in IMG/M
3300009088\|Ga0099830_11320922	All Organisms → cellular organisms → Bacteria	599	Open in IMG/M
3300009088\|Ga0099830_11610775	All Organisms → cellular organisms → Bacteria	541	Open in IMG/M
3300009088\|Ga0099830_11791240	All Organisms → cellular organisms → Bacteria	513	Open in IMG/M
3300009089\|Ga0099828_10474916	Not Available	1128	Open in IMG/M
3300009089\|Ga0099828_11942809	All Organisms → cellular organisms → Bacteria	516	Open in IMG/M
3300009090\|Ga0099827_11879668	All Organisms → cellular organisms → Bacteria	522	Open in IMG/M
3300009137\|Ga0066709_101344440	Not Available	1044	Open in IMG/M
3300009137\|Ga0066709_102583418	All Organisms → cellular organisms → Bacteria	681	Open in IMG/M
3300009137\|Ga0066709_102853682	All Organisms → cellular organisms → Bacteria	639	Open in IMG/M
3300009137\|Ga0066709_103199555	All Organisms → cellular organisms → Bacteria	597	Open in IMG/M
3300009700\|Ga0116217_10563125	All Organisms → cellular organisms → Bacteria	712	Open in IMG/M
3300010048\|Ga0126373_12880420	All Organisms → cellular organisms → Bacteria	537	Open in IMG/M
3300010337\|Ga0134062_10028054	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidobacterium → unclassified Acidobacterium → Acidobacterium sp.	2201	Open in IMG/M
3300010359\|Ga0126376_10561229	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1071	Open in IMG/M
3300011269\|Ga0137392_11323104	All Organisms → cellular organisms → Bacteria	580	Open in IMG/M
3300011269\|Ga0137392_11627115	All Organisms → cellular organisms → Bacteria	504	Open in IMG/M
3300011270\|Ga0137391_10357413	Not Available	1254	Open in IMG/M
3300011270\|Ga0137391_10358181	Not Available	1252	Open in IMG/M
3300011270\|Ga0137391_11139219	All Organisms → cellular organisms → Bacteria	628	Open in IMG/M
3300011270\|Ga0137391_11300711	All Organisms → cellular organisms → Bacteria	574	Open in IMG/M
3300011271\|Ga0137393_10652858	All Organisms → cellular organisms → Bacteria	902	Open in IMG/M
3300011271\|Ga0137393_10675128	All Organisms → cellular organisms → Bacteria	885	Open in IMG/M
3300012096\|Ga0137389_10663171	All Organisms → cellular organisms → Bacteria	896	Open in IMG/M
3300012189\|Ga0137388_11535007	All Organisms → cellular organisms → Bacteria	603	Open in IMG/M
3300012189\|Ga0137388_11539086	All Organisms → cellular organisms → Bacteria	602	Open in IMG/M
3300012199\|Ga0137383_10579811	All Organisms → cellular organisms → Bacteria	821	Open in IMG/M
3300012202\|Ga0137363_11139179	All Organisms → cellular organisms → Bacteria	663	Open in IMG/M
3300012205\|Ga0137362_10046708	All Organisms → cellular organisms → Bacteria	3509	Open in IMG/M
3300012207\|Ga0137381_10126345	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2188	Open in IMG/M
3300012207\|Ga0137381_11508891	All Organisms → cellular organisms → Bacteria	564	Open in IMG/M
3300012209\|Ga0137379_10758187	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	875	Open in IMG/M
3300012363\|Ga0137390_10086699	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	3084	Open in IMG/M
3300012363\|Ga0137390_11183286	All Organisms → cellular organisms → Bacteria	712	Open in IMG/M
3300012406\|Ga0134053_1162765	All Organisms → cellular organisms → Bacteria	514	Open in IMG/M
3300012683\|Ga0137398_10287051	Not Available	1103	Open in IMG/M
3300012918\|Ga0137396_10120278	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1893	Open in IMG/M
3300012918\|Ga0137396_10406921	Not Available	1008	Open in IMG/M
3300012924\|Ga0137413_10344768	Not Available	1055	Open in IMG/M
3300012927\|Ga0137416_10785441	All Organisms → cellular organisms → Bacteria	841	Open in IMG/M
3300012927\|Ga0137416_11753631	All Organisms → cellular organisms → Bacteria	567	Open in IMG/M
3300012929\|Ga0137404_12213525	All Organisms → cellular organisms → Bacteria	514	Open in IMG/M
3300012944\|Ga0137410_10210311	All Organisms → cellular organisms → Bacteria	1510	Open in IMG/M
3300012944\|Ga0137410_10500357	Not Available	993	Open in IMG/M
3300012944\|Ga0137410_10790145	All Organisms → cellular organisms → Bacteria	796	Open in IMG/M
3300014157\|Ga0134078_10182171	All Organisms → cellular organisms → Bacteria	846	Open in IMG/M
3300014166\|Ga0134079_10746358	All Organisms → cellular organisms → Bacteria	504	Open in IMG/M
3300015052\|Ga0137411_1094836	Not Available	976	Open in IMG/M
3300015053\|Ga0137405_1417597	All Organisms → cellular organisms → Bacteria → Acidobacteria	5276	Open in IMG/M
3300015054\|Ga0137420_1417073	Not Available	4435	Open in IMG/M
3300015241\|Ga0137418_11064842	All Organisms → cellular organisms → Bacteria	579	Open in IMG/M
3300017943\|Ga0187819_10636951	All Organisms → cellular organisms → Bacteria	603	Open in IMG/M
3300018090\|Ga0187770_10031205	All Organisms → cellular organisms → Bacteria	3724	Open in IMG/M
3300018468\|Ga0066662_11806155	Not Available	640	Open in IMG/M
3300020579\|Ga0210407_10986295	Not Available	643	Open in IMG/M
3300020581\|Ga0210399_11528504	All Organisms → cellular organisms → Bacteria	517	Open in IMG/M
3300020582\|Ga0210395_11425659	All Organisms → cellular organisms → Bacteria	505	Open in IMG/M
3300021086\|Ga0179596_10333436	All Organisms → cellular organisms → Bacteria	760	Open in IMG/M
3300021420\|Ga0210394_10483861	Not Available	1089	Open in IMG/M
3300021432\|Ga0210384_11273815	Not Available	640	Open in IMG/M
3300021479\|Ga0210410_10271715	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1521	Open in IMG/M
3300021559\|Ga0210409_10757404	All Organisms → cellular organisms → Bacteria	843	Open in IMG/M
3300024288\|Ga0179589_10442335	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Sumerlaeota → unclassified Candidatus Sumerlaeota → candidate division BRC1 bacterium ADurb.BinA364	599	Open in IMG/M
3300024330\|Ga0137417_1071733	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2861	Open in IMG/M
3300024330\|Ga0137417_1478841	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1348	Open in IMG/M
3300024330\|Ga0137417_1492474	Not Available	1240	Open in IMG/M
3300024347\|Ga0179591_1057624	Not Available	1139	Open in IMG/M
3300026285\|Ga0209438_1035083	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1663	Open in IMG/M
3300026305\|Ga0209688_1024993	Not Available	1157	Open in IMG/M
3300026309\|Ga0209055_1020509	All Organisms → cellular organisms → Bacteria → Acidobacteria	3186	Open in IMG/M
3300026329\|Ga0209375_1184674	All Organisms → cellular organisms → Bacteria	818	Open in IMG/M
3300026329\|Ga0209375_1297065	All Organisms → cellular organisms → Bacteria	528	Open in IMG/M
3300026331\|Ga0209267_1309766	All Organisms → cellular organisms → Bacteria	524	Open in IMG/M
3300026482\|Ga0257172_1058432	All Organisms → cellular organisms → Bacteria	707	Open in IMG/M
3300026499\|Ga0257181_1005865	All Organisms → cellular organisms → Bacteria	1475	Open in IMG/M
3300026514\|Ga0257168_1054625	All Organisms → cellular organisms → Bacteria	877	Open in IMG/M
3300026538\|Ga0209056_10260723	Not Available	1225	Open in IMG/M
3300026548\|Ga0209161_10238964	Not Available	961	Open in IMG/M
3300026551\|Ga0209648_10581095	All Organisms → cellular organisms → Bacteria	620	Open in IMG/M
3300027297\|Ga0208241_1057840	Not Available	618	Open in IMG/M
3300027535\|Ga0209734_1069493	All Organisms → cellular organisms → Bacteria	671	Open in IMG/M
3300027587\|Ga0209220_1097437	All Organisms → cellular organisms → Bacteria	773	Open in IMG/M
3300027633\|Ga0208988_1087363	All Organisms → cellular organisms → Bacteria	779	Open in IMG/M
3300027674\|Ga0209118_1003183	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	6748	Open in IMG/M
3300027862\|Ga0209701_10056266	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2512	Open in IMG/M
3300027862\|Ga0209701_10080791	All Organisms → cellular organisms → Bacteria → Acidobacteria	2049	Open in IMG/M
3300027862\|Ga0209701_10274028	Not Available	978	Open in IMG/M
3300027862\|Ga0209701_10721530	All Organisms → cellular organisms → Bacteria	511	Open in IMG/M
3300027882\|Ga0209590_10034336	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2711	Open in IMG/M
3300028536\|Ga0137415_10965035	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RBG_13_68_16	663	Open in IMG/M
3300030730\|Ga0307482_1248941	All Organisms → cellular organisms → Bacteria	557	Open in IMG/M
3300031720\|Ga0307469_11227789	All Organisms → cellular organisms → Bacteria	709	Open in IMG/M
3300031753\|Ga0307477_10908399	All Organisms → cellular organisms → Bacteria	581	Open in IMG/M
3300031754\|Ga0307475_11214421	All Organisms → cellular organisms → Bacteria	587	Open in IMG/M
3300031962\|Ga0307479_11165422	All Organisms → cellular organisms → Bacteria	735	Open in IMG/M
3300034125\|Ga0370484_0132148	Not Available	664	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	97.50%
Aquatic	Environmental → Aquatic	2.50%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	97.50%
Sediment	Environmental → Aquatic → Sediment	1.67%
Freshwater	Environmental → Aquatic → Freshwater	0.83%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	88.33%
Loam	Environmental → Terrestrial → Soil → Loam	7.50%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	1.67%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	1.67%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	0.83%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	54.17%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	21.67%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	12.50%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	7.50%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	1.67%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	1.67%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	0.83%

Habitat	Taxonomy	Distribution
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	46.67%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	11.67%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	9.17%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	8.33%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	7.50%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	4.17%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	3.33%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	1.67%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	1.67%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	1.67%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	0.83%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	0.83%
Grass Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grass Soil	0.83%
Untreated Peat Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil	0.83%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	0.83%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2170459010	Grass soil microbial communities from Rothamsted Park, UK - December 2009 direct MP BIO1O1 lysis 0-9cm (no DNA from 10 to 21cm!!!)	Environmental	Open in IMG/M
3300001089	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM1_M3	Environmental	Open in IMG/M
3300001162	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M2	Environmental	Open in IMG/M
3300002560	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_25_2013_1_20cm	Environmental	Open in IMG/M
3300002914	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm	Environmental	Open in IMG/M
3300002916	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_1_20cm	Environmental	Open in IMG/M
3300002917	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_100cm	Environmental	Open in IMG/M
3300004101	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF228 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300005186	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_125	Environmental	Open in IMG/M
3300005446	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_135	Environmental	Open in IMG/M
3300005576	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_157	Environmental	Open in IMG/M
3300006041	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2014	Environmental	Open in IMG/M
3300006086	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2013	Environmental	Open in IMG/M
3300006796	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114	Environmental	Open in IMG/M
3300007255	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_1	Environmental	Open in IMG/M
3300007265	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1	Environmental	Open in IMG/M
3300009088	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG	Environmental	Open in IMG/M
3300009089	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG	Environmental	Open in IMG/M
3300009090	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG	Environmental	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300009700	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_4_PS metaG	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010337	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_2_09082015	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010379	Sb_50d combined assembly	Environmental	Open in IMG/M
3300011269	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4A metaG	Environmental	Open in IMG/M
3300011270	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4B metaG	Environmental	Open in IMG/M
3300011271	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4B metaG	Environmental	Open in IMG/M
3300012096	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4B metaG	Environmental	Open in IMG/M
3300012189	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4A metaG	Environmental	Open in IMG/M
3300012199	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_40_16 metaG	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012205	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG	Environmental	Open in IMG/M
3300012207	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_115_16 metaG	Environmental	Open in IMG/M
3300012209	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_80_16 metaG	Environmental	Open in IMG/M
3300012363	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4A metaG	Environmental	Open in IMG/M
3300012406	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_40cm_5_4_1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012683	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz2.16 metaG	Environmental	Open in IMG/M
3300012918	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czcobulk3.16 metaG	Environmental	Open in IMG/M
3300012924	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012927	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012929	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012944	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300014157	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_20cm_2_24_1 metaG	Environmental	Open in IMG/M
3300014166	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_2_09182015	Environmental	Open in IMG/M
3300015052	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300015053	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300015054	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300015241	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300017943	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_4	Environmental	Open in IMG/M
3300018090	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP02_20_MG	Environmental	Open in IMG/M
3300018468	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111	Environmental	Open in IMG/M
3300020579	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M	Environmental	Open in IMG/M
3300020581	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M	Environmental	Open in IMG/M
3300020582	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-O	Environmental	Open in IMG/M
3300021086	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300021420	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M	Environmental	Open in IMG/M
3300021432	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M	Environmental	Open in IMG/M
3300021479	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-M	Environmental	Open in IMG/M
3300021559	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-M	Environmental	Open in IMG/M
3300024288	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_08_16fungal	Environmental	Open in IMG/M
3300024330	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300024347	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_08_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300026285	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_20cm (SPAdes)	Environmental	Open in IMG/M
3300026305	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_142 (SPAdes)	Environmental	Open in IMG/M
3300026309	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_110 (SPAdes)	Environmental	Open in IMG/M
3300026329	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_131 (SPAdes)	Environmental	Open in IMG/M
3300026331	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_137 (SPAdes)	Environmental	Open in IMG/M
3300026482	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DW-16-B	Environmental	Open in IMG/M
3300026499	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NR-06-B	Environmental	Open in IMG/M
3300026514	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DL-13-B	Environmental	Open in IMG/M
3300026538	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114 (SPAdes)	Environmental	Open in IMG/M
3300026548	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_155 (SPAdes)	Environmental	Open in IMG/M
3300026551	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm (SPAdes)	Environmental	Open in IMG/M
3300027297	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF047 (SPAdes)	Environmental	Open in IMG/M
3300027535	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM1_M2 (SPAdes)	Environmental	Open in IMG/M
3300027587	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM3_M3 (SPAdes)	Environmental	Open in IMG/M
3300027629	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M3 (SPAdes)	Environmental	Open in IMG/M
3300027633	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA Ref_M1 (SPAdes)	Environmental	Open in IMG/M
3300027674	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_M1 (SPAdes)	Environmental	Open in IMG/M
3300027842	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen04_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027862	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027882	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300028536	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300030730	Metatranscriptome of hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300031753	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_515	Environmental	Open in IMG/M
3300031754	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_515	Environmental	Open in IMG/M
3300031962	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515	Environmental	Open in IMG/M
3300034125	Peat soil microbial communities from wetlands in Alaska, United States - Sheep_creek_tus_01_15	Environmental	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
F62_03548300	2170459010	Grass Soil	MHXGARNLAERFTGERLDRIVDEEPMKASARELREAALGWIEVHLERQLKTRELLETT
JGI12683J13190_10155961	3300001089	Forest Soil	MKALHSAGRELAERFAGVSLGRLDFSAALSTAARELREAALNWIEHHVDRKLNTRTLLETS*
JGI12714J13572_10018101	3300001162	Forest Soil	LDRIEFEKSMQPAARELREAGLSWIEHHLERRLKTRELLEST*
JGI25383J37093_101615601	3300002560	Grasslands Soil	IAFDKSLPTRAGELREASFAWIEFHLERRLTTRELLETT*
JGI25617J43924_100889272	3300002914	Grasslands Soil	LEARNLAERFAGERLDRIEYEKSMQASAKELREAALDWIEHHSERRLMTRELLEST*
JGI25617J43924_101291781	3300002914	Grasslands Soil	NLAERFAGERLDRIAYEKSMQASARELREAALSWIEHHVERRLMTRELLESA*
JGI25617J43924_102482782	3300002914	Grasslands Soil	GMKPLHLEARNLAERFAGERLDRIAYEKSMQASARELREAALSWIELHVERRLMTRELLESA*
JGI25617J43924_102486532	3300002914	Grasslands Soil	GMKPLHLEARNLAERFAGERLDRIAYEKSMQASARELREAALSWIEHHVERRLMTRELLENA*
JGI25389J43894_10587331	3300002916	Grasslands Soil	ERFTGERLDRIAYEKSMQASVRELREAGLAWIENHVERRLTTRELLETT*
JGI25616J43925_101443312	3300002917	Grasslands Soil	LDRIAYEKSMQASARELREAALSWIELHVERRLMTRELLESA*
Ga0058896_13568271	3300004101	Forest Soil	ARNLAERFTGERLDRIEFTTALQSSAKELREVSLAWIEHHIERRLATRELLETA*
Ga0066676_101769473	3300005186	Soil	ERFTGERLDRIALEKPMQESARELREASLAWIEHHTERRLASRELLETT*
Ga0066686_106170292	3300005446	Soil	HLEARNLAERFANERLDRIEFEMSMQPGSRELREAGLTWIERHLERRLMTRELLETT*
Ga0066708_104245962	3300005576	Soil	ERFAGERLDRIEYEKSLQLGIRELREAGLCWIEHHLERRLRTRELLETT*
Ga0075023_1003827962	3300006041	Watersheds	NLAERFAGERLDQMEFEKSMQTGAMELREASLGWIEHHIERRLPTRELLETA*
Ga0075019_104797032	3300006086	Watersheds	RIAYEKSMQANARELREAALAWIEFHLERRLMTRELLETT*
Ga0066665_103866691	3300006796	Soil	PLHLEARNLAERFTGERLDRIAYEKSMQASVRELREAGLAWIENHVERRLTTRELLETT*
Ga0099791_100765341	3300007255	Vadose Zone Soil	PLHSEARNLAERFAGERLDRIEYQKSMQPGARELREAGLAWIEHHIERRLATRELLETT*
Ga0099791_102978711	3300007255	Vadose Zone Soil	GERLDRIEYEKSLQPSAKELREAGLAWIEHHLERRLMTRELLETT*
Ga0099794_102492481	3300007265	Vadose Zone Soil	RNLAERFAGERLDRIEYQKSMQPGARELREAGLAWIEHHVERRLATRELLETT*
Ga0099830_111896291	3300009088	Vadose Zone Soil	KSLRPSAKELREAALDWIEHHLERRLMTRELLEST*
Ga0099830_113209222	3300009088	Vadose Zone Soil	HLEARNLAERFAGERLDRIAYEKSMEASARELLEAALSWIEHHVERRLMTRELLESA*
Ga0099830_116107752	3300009088	Vadose Zone Soil	LDRIEYQKSMQPGARELREAGLAWIEHHIERRLATRELLETT*
Ga0099830_117912402	3300009088	Vadose Zone Soil	RIEYEKSLQPSAKELREAGLAWIEHHIERRLMTRELLETT*
Ga0099828_104749161	3300009089	Vadose Zone Soil	LDRIEFEKSMQPSARELREAGLSWIEHHLERRLKTRELLEST*
Ga0099828_119428092	3300009089	Vadose Zone Soil	KCRRSGMKPLHCESRDLAERFAAERLDRIAPEESMLGSAKELREASLSWMEHHSERRLTTRALLEAP*
Ga0099827_118796682	3300009090	Vadose Zone Soil	RTGMRALRPAARMLAERFAGERLDRIGPEPGLAPVAEELREAGLDWIEHHIDRRLNTRELLETT*
Ga0066709_1013444401	3300009137	Grasslands Soil	TGERLDRIAYEKSMQASVRELREAGLAWIENHVERRLTTRELLETT*
Ga0066709_1025834182	3300009137	Grasslands Soil	ERFTGERLDRIENAKSLRACARELREGSLAWIEHHLDRRLMTRELLETT*
Ga0066709_1028536821	3300009137	Grasslands Soil	GMKPLHAEARSLAERFAGERLDRMTLERCIETGAGELREAGLSWIEHHLERRLKTRELLETT*
Ga0066709_1031995551	3300009137	Grasslands Soil	RLDRIAYEKSMQASVRELREAGLAWIENHVERRLTTCELLETT*
Ga0116217_105631252	3300009700	Peatlands Soil	ERLDRIAYDKAMPSSVKELREAALAWIEHHLERRLLTRNLLETT*
Ga0126373_128804202	3300010048	Tropical Forest Soil	ANERLDRIEFTPAMQDSAKELREASLAWIEFHSEKRLKTRELLEMT*
Ga0134062_100280543	3300010337	Grasslands Soil	GIEYEKSLQLGVRELREAGLCWIEHHLERRLRTRELLETT*
Ga0126376_105612293	3300010359	Tropical Forest Soil	DHITLGKSTQTVAAELRGAALAWIEFNLERRLNTPELLETV*
Ga0136449_1038097721	3300010379	Peatlands Soil	PGTKPLHPEARNLAERFTNERLDRIEFESALHASARELREAALAWIEHNSERRLATRELLETA*
Ga0137392_113231042	3300011269	Vadose Zone Soil	FEARNLAERFAGERLDRIAFEKSMQASARELREAALSWIELHVERRLMTRALLESA*
Ga0137392_116271151	3300011269	Vadose Zone Soil	RFTGERLDRIGPEAGLASGAKELREAGLDWIEHHIDRRLSTRALLETA*
Ga0137391_103574131	3300011270	Vadose Zone Soil	MKPLHLEARNLAERFAGERLDRISYEESMHASAGELREAALSWIEHHLERRLMTPELLETT*
Ga0137391_103581813	3300011270	Vadose Zone Soil	MKPLHVEARELAERFAGERLDRMAFEKAMQTSARELREAALSWIEHHVERRLATRELLETI*
Ga0137391_111392192	3300011270	Vadose Zone Soil	FAGERLDRIEYEKSLQLGASELREAGLSWIEHHLERRLMTRELLEST*
Ga0137391_113007111	3300011270	Vadose Zone Soil	RNLAERFAGERLDRIEYEKSMQASAKELREAALDWIEYNVERRLRTRKLLEST*
Ga0137393_106528581	3300011271	Vadose Zone Soil	LHHEARDLAERFAAESLDRIAPEESMLGSAMEIREASLSWMEHHSERRLITRALLETP*
Ga0137393_106751282	3300011271	Vadose Zone Soil	LHPEARNLAERFAGERLDRIEYQKSMQPGARELREAGLAWIEHHVERRLATRELLEST*
Ga0137389_106631712	3300012096	Vadose Zone Soil	ARTLAERFTGERLDRIGPEAGLASGAKELREAGLDWIEHHIDRRLSTRALLETA*
Ga0137388_115350071	3300012189	Vadose Zone Soil	MKPLHVAARNLAERFAGERLDRIAYEKSMQASARELREAGLAWIERHVERKLKTRELLETA*
Ga0137388_115390861	3300012189	Vadose Zone Soil	MKPLHHEARTLAERFAGERLDRIEYQKSMQPSARELREASLTWIENHLERRLVTRELLETT*
Ga0137383_105798112	3300012199	Vadose Zone Soil	LEKPMQESARELREASLAWIEHHTERRLASRELLETT*
Ga0137363_111391791	3300012202	Vadose Zone Soil	MKPLHPEARSLAARFAGERLDRIEYEKSLQLGASELREAGLSWIEHHLERRLMTRELLEST*
Ga0137362_100467081	3300012205	Vadose Zone Soil	PLHLEARNLAERFAGERLDRIEYAESIETSVGELREAGLAWIENHVERRLATRELLETT*
Ga0137381_101263451	3300012207	Vadose Zone Soil	RIEYERSLQLGATRELREAGLCWIEHHLERRLRTRELLETT*
Ga0137381_115088912	3300012207	Vadose Zone Soil	GERLDGIEYEKSLQLGARELREAGLSWIEHHLERRLMTRELLEST*
Ga0137379_107581871	3300012209	Vadose Zone Soil	MKPLHIGARDLAERFAGERLDRMVIENSIQMSARELREAALAWIELHVERRLATRELLETT*
Ga0137390_100866993	3300012363	Vadose Zone Soil	GERLNRIEMPSVLRPSAKELREASFNWIEHHTERQLKTREFLETT*
Ga0137390_111832862	3300012363	Vadose Zone Soil	ASERLDRIEYQKSMQPSARELRQAALDWIEYNVERRLRTRKLLEST*
Ga0134053_11627652	3300012406	Grasslands Soil	EKSMQPSVKQLREAGLVWIENHLERRLATRELLETA*
Ga0137398_102870511	3300012683	Vadose Zone Soil	FAGERLDRIEYGKSLQPDARELREAALAWIEYHLERRLKTRELLETT*
Ga0137396_101202781	3300012918	Vadose Zone Soil	RNLAERFAGERLDRIEYEKSMPSSARELREAGLDWIEHHVERRLATRKFLETT*
Ga0137396_104069211	3300012918	Vadose Zone Soil	FAGERLDRIEYPKSMQASARELREAALDWIEHHVERRLMTRELLEST*
Ga0137413_103447682	3300012924	Vadose Zone Soil	PLHFEARNLAELFAGERLDRIAYEKSMQASARELREAALAWIELHVERRLMTRALLETA*
Ga0137416_107854411	3300012927	Vadose Zone Soil	AERFAGERLDRIEYEKSLQPSAKELREAGLAWIEHHLERRLMTRELLETT*
Ga0137416_117536312	3300012927	Vadose Zone Soil	EARNLAERFAGEGLDRIEYEKAMQPAARELRDAGLGWIEHHLERRLRTREFLEST*
Ga0137404_122135252	3300012929	Vadose Zone Soil	FTGERLDRIEYNKAMQPIAGELREASLTWIEHNLERRLKTRELLEQT*
Ga0137410_102103113	3300012944	Vadose Zone Soil	LHHEARLLAERFTGERLDRIEFDKSMQPSAGELREASLTWIEHNIERRLITRELLEQT*
Ga0137410_105003572	3300012944	Vadose Zone Soil	ERLDRIEYHKSMEACARELREASLAWIENHLERRLTTRELLETT*
Ga0137410_107901451	3300012944	Vadose Zone Soil	KSMQPIAGELREASLAWIEHHLERHLITRELLEQT*
Ga0134078_101821711	3300014157	Grasslands Soil	SMQASVRELREAGLAWIENHVERRLTTRELLETT*
Ga0134079_107463582	3300014166	Grasslands Soil	RIAYEKSMQASVRELREAGLAWIENHVERRLTTRELLETT*
Ga0137411_10948362	3300015052	Vadose Zone Soil	YEKAMQPGVRELREAALTWIEHHLERRLRTRDLLEST*
Ga0137405_14175976	3300015053	Vadose Zone Soil	MTRINPAFLRKVSSLRDEAFAPGSTPSRERFTGERLDRIAFDKSMQPIAGELREASLTWIEHNIERRLITRELLEQTES*
Ga0137420_14170738	3300015054	Vadose Zone Soil	VSPLRDEAFAPEARLLAERFTGERLDRIEFDKSMQPSAGELREASLTWIEHNIERRLITRELLEQT*
Ga0137418_109423732	3300015241	Vadose Zone Soil	GMTPLHHEARLLAERFTGERLDRIEYNKAMQPIAGELREASLTWIEHNLERRLKTRELLEQT*
Ga0137418_110648422	3300015241	Vadose Zone Soil	FTGERLDRIEYEKSLQTSARKLREAALAWIEHHLERQLKTRELLETT*
Ga0187819_106369512	3300017943	Freshwater Sediment	GERLDRISYEKAMQKSVEELREASFAWLEFHLEKRLATRELLETA
Ga0187770_100312051	3300018090	Tropical Peatland	KPLHREARELAERFTSERLDRISFEKPMEQSARELREASFAWIEFHLEKRLATRELLETA
Ga0066662_118061552	3300018468	Grasslands Soil	GARNLAERFTGERLDRIALEKPMQESARELREASLAWIEHHTERRLASRQLLETT
Ga0210407_109862951	3300020579	Soil	LDRIEFSAAMQPSAKELREASLAWIEHHLERRLATRELLENA
Ga0210399_115285042	3300020581	Soil	QEARVVAERFTGERLDRIAPDKLMQASARELREASLTWIEHNVEKRLATRGLLETV
Ga0210395_114256591	3300020582	Soil	FLAERFTGERLDHMTFEQAMQASARELREASLTWIEHNIERRLATRTLLETT
Ga0179596_103334362	3300021086	Vadose Zone Soil	AGMKPMHVGARNLAERFTGERLDRIVDEEAMKASAKELREAALGWIEVHLERQLRTRELLETT
Ga0210394_104838612	3300021420	Soil	MKPLHAEARRLAERFAGERLDRIEFEKSMQPAGRELREAGLSWIEHHLERRLKTRELLES
Ga0210384_112738152	3300021432	Soil	RIEYEKSMQPSVRELREAALAWIEHHLERRLRTRELLEST
Ga0210410_102717153	3300021479	Soil	MKSLHIEARNLAERFAGERLDRIEYQKPMQASARELREAALDWIEHHIERRLMTRELLES
Ga0210409_107574042	3300021559	Soil	LAERFTGERLDHMAFEKAMQASARELREASLTWIEHNIERRLATRTLLETT
Ga0179589_104423352	3300024288	Vadose Zone Soil	NLAERFTGERLDRSVDEEAMKASAKELREAALGWIEVHLERQLRTRELLETT
Ga0137417_10717333	3300024330	Vadose Zone Soil	LAERFAGERLDRIKYEKAVQPGARELREAALTWIEHHLERRLRTRELLEST
Ga0137417_14788413	3300024330	Vadose Zone Soil	MKPLHVEARNLAERFAGEGLDRIEYEKAMQPAARELRDAGLGWIEHHLERRLRTRELLES
Ga0137417_14924741	3300024330	Vadose Zone Soil	AGEGLDRIEYEKAMQPAARELRDAGLGWIEHHLERRLRTRELLEST
Ga0179591_10576243	3300024347	Vadose Zone Soil	IEYEKSLQLGASELREAGLSWIEHHLERRLMTRELLEST
Ga0209438_10350833	3300026285	Grasslands Soil	NLAERFAGERLDRIEYEKAMQPGVRELREAALTWIEHHLERRLRTRDLLEST
Ga0209688_10249932	3300026305	Soil	ARSLAERFAGERLDRMTFERCIETGARELREAGLSWIEHHLERRLRTRELLETT
Ga0209055_10205092	3300026309	Soil	FTGERLDRIEYEKSMQPSVKQLREAGLVWIENHLERRLATRELLETA
Ga0209375_11846741	3300026329	Soil	EYEKSLQLGIRELREAGLCWIEHHLERRLRTRELLETT
Ga0209375_12970651	3300026329	Soil	TFERCIETGARELREAGLSWIEHHLERRLRTRELLETT
Ga0209267_13097661	3300026331	Soil	LDRIEYEKSLPTSVRELRETGLAWIEKHVERRLTTRQLLETT
Ga0257172_10584321	3300026482	Soil	FAGERLDRIEYEKSLQPSAKELREAGLAWIEHHLERRLMTRELLETT
Ga0257181_10058653	3300026499	Soil	ESLQPSARELREAGLAWIEHHLERRLMTRELLETT
Ga0257168_10546251	3300026514	Soil	PLHLEARNLAERFTGERLDRIAYDNSMQPSARELREAALAWIEHHLERRLITRALLETT
Ga0209056_102607233	3300026538	Soil	DRIAYEKSMQASVRELREAGLAWIENHVERRLTTRELLETT
Ga0209161_102389642	3300026548	Soil	RMTFERCIETGARELREAGLSWIEHHLERRLRTRELLETT
Ga0209648_105810952	3300026551	Grasslands Soil	LAERFAGERLDRIEYEKSLQPSAKELREAGLAWIEHHIERRLMTRELLETT
Ga0208241_10578402	3300027297	Forest Soil	LDRVALEPAMQGSAKELREASLAWIEFHIERRLPTRELLETA
Ga0209734_10694932	3300027535	Forest Soil	AARSLAERFAGERLDRIEYEKSLPPGARELREAGLSWIEHHLERRLRTRELLEST
Ga0209220_10974371	3300027587	Forest Soil	KSMQPAARELREAALAWIEHHLERRLRTRELLEST
Ga0209422_10855021	3300027629	Forest Soil	MRPLHPAGRALAERFAAERLDRIEADAGLTTAARELREAALDWIEHHIDRRLNTRALLET
Ga0208988_10873631	3300027633	Forest Soil	LDRIEYEKAMQPAARELRDAGLGWIEHHLERRLRTREFLEST
Ga0209118_10031831	3300027674	Forest Soil	RIEFEQSMQASAKELQEASLTWIEHHLERRLATRELLEST
Ga0209580_105125171	3300027842	Surface Soil	PAGRALAERFAGERLDRIEADAGLATAARELREAALDWIEHHIDRRLNTRALLETEG
Ga0209701_100562663	3300027862	Vadose Zone Soil	KPLHHEARDLAERFAAESLDRIAPEESMLGSAMEIREASLSWMEHHSERRLSTRALLETS
Ga0209701_100807911	3300027862	Vadose Zone Soil	RFAGERLDRIEYQKSMQPGARELREAGLAWIEHHIERRLATRELLETT
Ga0209701_102740281	3300027862	Vadose Zone Soil	RFAGERLDRIEYQKSMQPGARELREAGLAWIEHHVERRLATRELLETT
Ga0209701_107215301	3300027862	Vadose Zone Soil	RIEYEKSLQPSAKELREAGLAWIEHHIERRLMTRELLETT
Ga0209590_100343363	3300027882	Vadose Zone Soil	CESRDLAERFAAERLDRIAPEESMLGSAKELREASLSWMEHHSERRLTTRALLEAP
Ga0137415_109650351	3300028536	Vadose Zone Soil	LDRIEYENSVQPSARELREAALAWIEHHLERHLITRELLETT
Ga0307482_12489412	3300030730	Hardwood Forest Soil	AERFAAERLDRIKYEKSMPAGAKQLREASLAWIEHHLERRLMTRELLEST
Ga0307469_112277891	3300031720	Hardwood Forest Soil	RLLAERFTGERLDRIEFDKSMRPSAGELREASLTWIEHNLERRLITRELLEQT
Ga0307477_109083992	3300031753	Hardwood Forest Soil	DRIALDPAMQGSAKELREASLAWIEFHIERRLSTRELLETA
Ga0307475_112144211	3300031754	Hardwood Forest Soil	RALAERFAGERLDRIEYENSMPPRVKELREAALAWIENHVERRLTTRELLETT
Ga0307479_111654222	3300031962	Hardwood Forest Soil	GMKPMHAGARNLAERFTGERLDRIVDEEPMKAGAKELREAALGWIEVHLERQLRTRELLETT
Ga0370484_0132148_2_169	3300034125	Untreated Peat Soil	AARELAERFTGERLDRIALTEPMKPALRELREASLGWIEHHTERKLATRELLEKI

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F073321

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences