Metagenome Family F073217

Basic Information
Family ID	F073217
Family Type	Metagenome
Number of Sequences	120
Average Sequence Length	65 residues
Representative Sequence	MMLMIDPPVNVFSSVDAVRDWIVELADLRERYRDDHEALRRITGEELYASRLLELIPTLPPISPPGT
Number of Associated Samples	96
Number of Associated Scaffolds	120

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	82.50 %
% of genes near scaffold ends (potentially truncated)	30.83 %
% of genes from short scaffolds (< 2000 bps)	85.00 %
Associated GOLD sequencing projects	82
AlphaFold2 3D model prediction	No

Most Common Taxonomy
Group	Unclassified (70.833 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere (15.833 % of family members)
Environment Ontology (ENVO)	Unclassified (60.833 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (83.333 % of family members)

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 59.70% β-sheet: 0.00% Coil/Unstructured: 40.30%
Feature Viewer

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Pfam ID	Name	% Frequency in 120 Family Scaffolds
PF00072	Response_reg	3.33
PF04679	DNA_ligase_A_C	2.50
PF07638	Sigma70_ECF	1.67
PF00069	Pkinase	1.67
PF02782	FGGY_C	0.83
PF06071	YchF-GTPase_C	0.83
PF00989	PAS	0.83
PF04964	Flp_Fap	0.83
PF07858	LEH	0.83
PF04972	BON	0.83
PF07676	PD40	0.83
PF14534	DUF4440	0.83
PF00144	Beta-lactamase	0.83
PF13439	Glyco_transf_4	0.83
PF13335	Mg_chelatase_C	0.83

COG ID	Name	Functional Category	% Frequency in 120 Family Scaffolds
COG0515	Serine/threonine protein kinase	Signal transduction mechanisms [T]	6.67
COG1793	ATP-dependent DNA ligase	Replication, recombination and repair [L]	2.50
COG1595	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	Transcription [K]	1.67
COG0012	Ribosome-binding ATPase YchF, GTP1/OBG family	Translation, ribosomal structure and biogenesis [J]	0.83
COG1680	CubicO group peptidase, beta-lactamase class C family	Defense mechanisms [V]	0.83
COG1686	D-alanyl-D-alanine carboxypeptidase	Cell wall/membrane/envelope biogenesis [M]	0.83
COG2367	Beta-lactamase class A	Defense mechanisms [V]	0.83
COG3631	Ketosteroid isomerase-related protein	General function prediction only [R]	0.83
COG3847	Flp pilus assembly protein, pilin Flp	Extracellular structures [W]	0.83
COG4308	Limonene-1,2-epoxide hydrolase LimA/EphG	Secondary metabolites biosynthesis, transport and catabolism [Q]	0.83

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	70.83 %
All Organisms	root	All Organisms	29.17 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	70.83 %
cellular organisms	root	All Organisms → cellular organisms	29.17 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	70.83 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	29.17 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	70.83 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	9.17 %
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	3.33 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1.67 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	70.83 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	8.33 %
Gemmatimonadetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	2.50 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.83 %
Bacteroidetes/Chlorobi group	clade	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group	0.83 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	70.83 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	8.33 %
unclassified Gemmatimonadetes	no rank	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes	2.50 %
Bacteroidetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	0.83 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.83 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	70.83 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	8.33 %
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	1.67 %
Chitinophagia	class	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Chitinophagia	0.83 %
Gemmatimonadetes bacterium 13_1_40CM_2_60_3	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium 13_1_40CM_2_60_3	0.83 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.83 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	70.83 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	8.33 %
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	1.67 %
Chitinophagales	order	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Chitinophagia → Chitinophagales	0.83 %
Gemmatimonadetes bacterium 13_1_40CM_2_60_3	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium 13_1_40CM_2_60_3	0.83 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.83 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	70.83 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	8.33 %
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	1.67 %
Chitinophagaceae	family	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Chitinophagia → Chitinophagales → Chitinophagaceae	0.83 %
Gemmatimonadetes bacterium 13_1_40CM_2_60_3	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium 13_1_40CM_2_60_3	0.83 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.83 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.83 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2140918013\|NODE_12147_length_1635_cov_8.396330	Not Available	1667	Open in IMG/M
3300000033\|ICChiseqgaiiDRAFT_c0856479	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2848	Open in IMG/M
3300000559\|F14TC_100722254	Not Available	694	Open in IMG/M
3300000956\|JGI10216J12902_100156241	Not Available	843	Open in IMG/M
3300004114\|Ga0062593_100254254	Not Available	1455	Open in IMG/M
3300004157\|Ga0062590_102233733	Not Available	574	Open in IMG/M
3300004479\|Ga0062595_100114580	All Organisms → cellular organisms → Bacteria	1474	Open in IMG/M
3300005093\|Ga0062594_101647380	Not Available	667	Open in IMG/M
3300005295\|Ga0065707_10142705	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1752	Open in IMG/M
3300005328\|Ga0070676_10083436	Not Available	1943	Open in IMG/M
3300005329\|Ga0070683_100272992	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1608	Open in IMG/M
3300005329\|Ga0070683_101541672	Not Available	639	Open in IMG/M
3300005329\|Ga0070683_102352202	Not Available	511	Open in IMG/M
3300005330\|Ga0070690_101639148	Not Available	522	Open in IMG/M
3300005331\|Ga0070670_100085867	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	2704	Open in IMG/M
3300005334\|Ga0068869_100131036	All Organisms → cellular organisms → Bacteria	1927	Open in IMG/M
3300005334\|Ga0068869_100388074	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1146	Open in IMG/M
3300005340\|Ga0070689_101530467	Not Available	605	Open in IMG/M
3300005343\|Ga0070687_100572022	Not Available	772	Open in IMG/M
3300005344\|Ga0070661_100166168	All Organisms → cellular organisms → Bacteria	1674	Open in IMG/M
3300005344\|Ga0070661_100711844	Not Available	819	Open in IMG/M
3300005353\|Ga0070669_101010937	Not Available	714	Open in IMG/M
3300005365\|Ga0070688_100509782	Not Available	909	Open in IMG/M
3300005366\|Ga0070659_100968696	Not Available	746	Open in IMG/M
3300005367\|Ga0070667_101860120	Not Available	567	Open in IMG/M
3300005438\|Ga0070701_11126248	Not Available	554	Open in IMG/M
3300005441\|Ga0070700_100180446	All Organisms → cellular organisms → Bacteria	1469	Open in IMG/M
3300005455\|Ga0070663_100190462	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1596	Open in IMG/M
3300005459\|Ga0068867_101015593	Not Available	753	Open in IMG/M
3300005535\|Ga0070684_100188628	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1876	Open in IMG/M
3300005535\|Ga0070684_100810507	Not Available	875	Open in IMG/M
3300005545\|Ga0070695_100979018	Not Available	687	Open in IMG/M
3300005546\|Ga0070696_101434136	Not Available	589	Open in IMG/M
3300005548\|Ga0070665_100585549	Not Available	1129	Open in IMG/M
3300005563\|Ga0068855_100787174	Not Available	1012	Open in IMG/M
3300005563\|Ga0068855_102427054	Not Available	523	Open in IMG/M
3300005564\|Ga0070664_100081090	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	2795	Open in IMG/M
3300005564\|Ga0070664_100105409	Not Available	2455	Open in IMG/M
3300005564\|Ga0070664_100146541	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	2082	Open in IMG/M
3300005578\|Ga0068854_100484611	Not Available	1039	Open in IMG/M
3300005616\|Ga0068852_101099845	Not Available	815	Open in IMG/M
3300005718\|Ga0068866_10330576	Not Available	962	Open in IMG/M
3300005842\|Ga0068858_102467681	Not Available	514	Open in IMG/M
3300005843\|Ga0068860_100226162	All Organisms → cellular organisms → Bacteria	1817	Open in IMG/M
3300005844\|Ga0068862_100591979	Not Available	1064	Open in IMG/M
3300006844\|Ga0075428_101017258	Not Available	877	Open in IMG/M
3300006845\|Ga0075421_101844084	Not Available	649	Open in IMG/M
3300006847\|Ga0075431_102012564	Not Available	533	Open in IMG/M
3300006871\|Ga0075434_100067973	All Organisms → cellular organisms → Bacteria	3549	Open in IMG/M
3300009093\|Ga0105240_11294230	Not Available	769	Open in IMG/M
3300009094\|Ga0111539_10150538	Not Available	2724	Open in IMG/M
3300009098\|Ga0105245_12782906	Not Available	542	Open in IMG/M
3300009100\|Ga0075418_10308898	Not Available	1686	Open in IMG/M
3300009156\|Ga0111538_10066516	Not Available	4591	Open in IMG/M
3300009174\|Ga0105241_12600376	Not Available	508	Open in IMG/M
3300009545\|Ga0105237_12124724	Not Available	571	Open in IMG/M
3300012212\|Ga0150985_105536214	Not Available	2190	Open in IMG/M
3300012212\|Ga0150985_109526631	Not Available	2193	Open in IMG/M
3300012484\|Ga0157333_1000799	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium 13_1_40CM_2_60_3	1334	Open in IMG/M
3300012958\|Ga0164299_11019905	Not Available	611	Open in IMG/M
3300012989\|Ga0164305_10393419	Not Available	1059	Open in IMG/M
3300013102\|Ga0157371_11642012	Not Available	504	Open in IMG/M
3300013296\|Ga0157374_12943680	Not Available	503	Open in IMG/M
3300013306\|Ga0163162_13447671	Not Available	504	Open in IMG/M
3300013307\|Ga0157372_12650116	Not Available	575	Open in IMG/M
3300013307\|Ga0157372_13329908	Not Available	512	Open in IMG/M
3300013308\|Ga0157375_11554261	Not Available	782	Open in IMG/M
3300014745\|Ga0157377_10087601	All Organisms → cellular organisms → Bacteria	1832	Open in IMG/M
3300014745\|Ga0157377_10954782	Not Available	645	Open in IMG/M
3300014969\|Ga0157376_12325874	Not Available	575	Open in IMG/M
3300015265\|Ga0182005_1088438	Not Available	860	Open in IMG/M
3300015374\|Ga0132255_101455644	Not Available	1036	Open in IMG/M
3300017792\|Ga0163161_11868168	Not Available	535	Open in IMG/M
3300021445\|Ga0182009_10146027	Not Available	1120	Open in IMG/M
3300025321\|Ga0207656_10029696	All Organisms → cellular organisms → Bacteria	2254	Open in IMG/M
3300025321\|Ga0207656_10097165	All Organisms → cellular organisms → Bacteria	1345	Open in IMG/M
3300025885\|Ga0207653_10221872	Not Available	718	Open in IMG/M
3300025899\|Ga0207642_10298709	Not Available	933	Open in IMG/M
3300025904\|Ga0207647_10805609	Not Available	505	Open in IMG/M
3300025907\|Ga0207645_10024407	All Organisms → cellular organisms → Bacteria	3920	Open in IMG/M
3300025918\|Ga0207662_10054630	All Organisms → cellular organisms → Bacteria	2382	Open in IMG/M
3300025919\|Ga0207657_10265065	Not Available	1366	Open in IMG/M
3300025920\|Ga0207649_10139238	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1658	Open in IMG/M
3300025920\|Ga0207649_10566136	Not Available	871	Open in IMG/M
3300025920\|Ga0207649_10611748	Not Available	839	Open in IMG/M
3300025925\|Ga0207650_10205031	Not Available	1581	Open in IMG/M
3300025925\|Ga0207650_10340094	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1232	Open in IMG/M
3300025925\|Ga0207650_11335544	Not Available	610	Open in IMG/M
3300025931\|Ga0207644_10130589	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1923	Open in IMG/M
3300025931\|Ga0207644_11301350	Not Available	611	Open in IMG/M
3300025932\|Ga0207690_10150727	All Organisms → cellular organisms → Bacteria	1724	Open in IMG/M
3300025932\|Ga0207690_10163174	Not Available	1663	Open in IMG/M
3300025932\|Ga0207690_10532210	Not Available	953	Open in IMG/M
3300025932\|Ga0207690_11279605	Not Available	613	Open in IMG/M
3300025933\|Ga0207706_10035981	All Organisms → cellular organisms → Bacteria	4399	Open in IMG/M
3300025933\|Ga0207706_10232503	Not Available	1613	Open in IMG/M
3300025936\|Ga0207670_10570776	Not Available	926	Open in IMG/M
3300025937\|Ga0207669_11687578	Not Available	541	Open in IMG/M
3300025942\|Ga0207689_10019571	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Chitinophagia → Chitinophagales → Chitinophagaceae	5704	Open in IMG/M
3300025944\|Ga0207661_10172235	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1885	Open in IMG/M
3300025944\|Ga0207661_10331771	Not Available	1369	Open in IMG/M
3300025945\|Ga0207679_10095681	Not Available	2309	Open in IMG/M
3300025960\|Ga0207651_10827880	Not Available	822	Open in IMG/M
3300026067\|Ga0207678_10180745	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1801	Open in IMG/M
3300026075\|Ga0207708_10128811	All Organisms → cellular organisms → Bacteria	1977	Open in IMG/M
3300026075\|Ga0207708_11419013	Not Available	609	Open in IMG/M
3300026095\|Ga0207676_10971855	All Organisms → cellular organisms → Bacteria	836	Open in IMG/M
3300026116\|Ga0207674_10204365	All Organisms → cellular organisms → Bacteria	1925	Open in IMG/M
3300027909\|Ga0209382_11487322	All Organisms → cellular organisms → Bacteria → Terrabacteria group	675	Open in IMG/M
3300028381\|Ga0268264_12329367	Not Available	542	Open in IMG/M
3300030336\|Ga0247826_11292327	Not Available	587	Open in IMG/M
3300031548\|Ga0307408_100001782	All Organisms → cellular organisms → Bacteria	15722	Open in IMG/M
3300031740\|Ga0307468_101842940	Not Available	574	Open in IMG/M
3300031854\|Ga0310904_10217190	Not Available	1164	Open in IMG/M
3300031913\|Ga0310891_10332298	Not Available	542	Open in IMG/M
3300031938\|Ga0308175_100233883	Not Available	1833	Open in IMG/M
3300032179\|Ga0310889_10318196	Not Available	755	Open in IMG/M
3300032211\|Ga0310896_10296377	Not Available	835	Open in IMG/M
3300033412\|Ga0310810_10011590	All Organisms → cellular organisms → Bacteria	10305	Open in IMG/M
3300033412\|Ga0310810_10917005	Not Available	766	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Host-Associated	Host-Associated	65.00%
Environmental	Environmental	35.00%

Habitat	Taxonomy	Distribution
Plants	Host-Associated → Plants	65.00%
Terrestrial	Environmental → Terrestrial	35.00%

Habitat	Taxonomy	Distribution
Rhizosphere	Host-Associated → Plants → Rhizosphere	45.00%
Soil	Environmental → Terrestrial → Soil	35.00%
Rhizoplane	Host-Associated → Plants → Rhizoplane	20.00%

Habitat	Taxonomy	Distribution
Soil	Host-Associated → Plants → Rhizosphere → Soil	26.67%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	18.33%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	17.50%
Loam	Environmental → Terrestrial → Soil → Loam	17.50%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	17.50%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	2.50%

Habitat	Taxonomy	Distribution
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	26.67%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	18.33%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	17.50%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	16.67%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	5.83%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	5.00%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	3.33%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	2.50%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	2.50%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	0.83%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.83%

Habitat	Taxonomy	Distribution
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	15.83%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	8.33%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	6.67%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	6.67%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	5.83%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	5.83%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	5.00%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	5.00%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	5.00%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	4.17%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	4.17%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	4.17%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	3.33%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	2.50%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	2.50%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	2.50%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	2.50%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	1.67%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	1.67%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.83%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere	0.83%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.83%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.83%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.83%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	0.83%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.83%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	0.83%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2140918013	Soil microbial communities from Great Prairies - Iowa soil (MSU Assemblies)	Environmental	Open in IMG/M
3300000033	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300000559	Amended soil microbial communities from Kansas Great Prairies, USA - control no BrdU total DNA F1.4 TC clc assemly	Environmental	Open in IMG/M
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300004157	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - - Combined assembly of AARS Block 2	Environmental	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300005093	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All Blocks	Environmental	Open in IMG/M
3300005295	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL3	Environmental	Open in IMG/M
3300005328	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG	Host-Associated	Open in IMG/M
3300005329	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG	Environmental	Open in IMG/M
3300005330	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG	Environmental	Open in IMG/M
3300005331	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG	Host-Associated	Open in IMG/M
3300005334	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2	Host-Associated	Open in IMG/M
3300005340	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG	Environmental	Open in IMG/M
3300005343	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG	Environmental	Open in IMG/M
3300005344	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG	Host-Associated	Open in IMG/M
3300005353	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG	Host-Associated	Open in IMG/M
3300005365	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3H metaG	Environmental	Open in IMG/M
3300005366	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG	Host-Associated	Open in IMG/M
3300005367	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG	Host-Associated	Open in IMG/M
3300005438	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-2 metaG	Environmental	Open in IMG/M
3300005441	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG	Environmental	Open in IMG/M
3300005455	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG	Host-Associated	Open in IMG/M
3300005459	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2	Host-Associated	Open in IMG/M
3300005535	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG	Environmental	Open in IMG/M
3300005545	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaG	Environmental	Open in IMG/M
3300005546	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG	Environmental	Open in IMG/M
3300005548	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG	Host-Associated	Open in IMG/M
3300005563	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2	Host-Associated	Open in IMG/M
3300005564	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG	Host-Associated	Open in IMG/M
3300005578	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2	Host-Associated	Open in IMG/M
3300005616	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2	Host-Associated	Open in IMG/M
3300005718	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2	Host-Associated	Open in IMG/M
3300005842	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2	Host-Associated	Open in IMG/M
3300005843	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2	Host-Associated	Open in IMG/M
3300005844	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2	Host-Associated	Open in IMG/M
3300006844	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2	Host-Associated	Open in IMG/M
3300006845	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5	Host-Associated	Open in IMG/M
3300006847	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5	Host-Associated	Open in IMG/M
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated	Open in IMG/M
3300009093	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG	Host-Associated	Open in IMG/M
3300009094	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)	Host-Associated	Open in IMG/M
3300009098	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG	Host-Associated	Open in IMG/M
3300009100	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2	Host-Associated	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300009174	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG	Host-Associated	Open in IMG/M
3300009545	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG	Host-Associated	Open in IMG/M
3300012212	Combined assembly of Hopland grassland soil	Host-Associated	Open in IMG/M
3300012484	Unplanted soil (control) microbial communities from North Carolina - M.Soil.2.old.190510	Environmental	Open in IMG/M
3300012958	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_221_MG	Environmental	Open in IMG/M
3300012989	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_237_MG	Environmental	Open in IMG/M
3300013102	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG	Host-Associated	Open in IMG/M
3300013296	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG	Host-Associated	Open in IMG/M
3300013306	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG	Host-Associated	Open in IMG/M
3300013307	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG	Host-Associated	Open in IMG/M
3300013308	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG	Host-Associated	Open in IMG/M
3300014745	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5-5 metaG	Host-Associated	Open in IMG/M
3300014969	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG	Host-Associated	Open in IMG/M
3300015265	Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-103_1 MetaG	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300017792	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG	Host-Associated	Open in IMG/M
3300021445	Bulk soil microbial communities from the field in Mead, Nebraska, USA - 072115-187_1 MetaG	Environmental	Open in IMG/M
3300025321	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025885	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025899	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025904	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes)	Host-Associated	Open in IMG/M
3300025907	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025918	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG (SPAdes)	Environmental	Open in IMG/M
3300025919	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025920	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025925	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025931	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025932	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025933	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025936	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes)	Environmental	Open in IMG/M
3300025937	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025942	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025944	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes)	Environmental	Open in IMG/M
3300025945	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025960	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026067	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026075	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300026095	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026116	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes)	Host-Associated	Open in IMG/M
3300027909	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5 (SPAdes)	Host-Associated	Open in IMG/M
3300028381	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300030336	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day1	Environmental	Open in IMG/M
3300031548	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3	Host-Associated	Open in IMG/M
3300031740	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05	Environmental	Open in IMG/M
3300031854	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D1	Environmental	Open in IMG/M
3300031913	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D4	Environmental	Open in IMG/M
3300031938	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.C.R1	Environmental	Open in IMG/M
3300032179	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D2	Environmental	Open in IMG/M
3300032211	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C8D1	Environmental	Open in IMG/M
3300033412	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - NC	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
Iowa-Corn-GraphCirc_03574140	2140918013	Soil	MLMIDPPVNVCSSVDAVRDWIVELADLRERYRDDHDALRRITGEELYASRLLELIPTLPPISPPGT
ICChiseqgaiiDRAFT_08564795	3300000033	Soil	MLMIDPPVNVCSSVDAVRDWIVELADLRERYRDDHDALRRITGEELYASRLLELIPTLPPISPPVS*
F14TC_1007222542	3300000559	Soil	MLMIDPPVNVFSSVDAVRDWIVQLVDLRERYRDDHEALRRITGEELYASRLLELIPTLPPISPPVS*
JGI10216J12902_1001562412	3300000956	Soil	MMLMIHPPVNVFSSVDAVRDWIVQLADLRERYRDDNEALRRITGEELYASRLLELIPTLPPISPPAT*
Ga0062593_1002542542	3300004114	Soil	MVMMIDPPVNVFSSVDAVRDWIVDLAGMRERYRDDHEALRRITRGELYASRLLELIPMLPKVAAPHAG*
Ga0062590_1022337331	3300004157	Soil	MSTIDPPVNVFSSADAVRDWIVTLEDLRERYGDDHEALRRLTGEELYANRLLELLATLPPVSSPAT*
Ga0062595_1001145801	3300004479	Soil	MMLLIDPPVNVFSSLDSVRDWIVELADLRERYRDDHEALRRITGEELYASRLLELIPTLPPISPPGT*
Ga0062594_1016473802	3300005093	Soil	MVMIGPPVDAFSSVDAVRDWIVELARLREHYRDDPDALRRIVGEELYANRLLELIPTLPKVAPRGAI*
Ga0065707_101427051	3300005295	Switchgrass Rhizosphere	MLMIDPPVNVCSSVDAVRDWIVELADLRERYRDDHDALRRITGEELYASRLLELI
Ga0070676_100834362	3300005328	Miscanthus Rhizosphere	MSTIDPPVNVFSSADALRDWIVTLEDLRERYGDDHEALRRLTGEELYANRLLELLATLPPVSSPAT*
Ga0070683_1002729921	3300005329	Corn Rhizosphere	MMLLIDPPVNVFSSLDSVRDWIVELADLRERYRDDHEALRRITGEELYASRLLELIPTLPPISPGT*
Ga0070683_1015416721	3300005329	Corn Rhizosphere	MSTIGPPVNVFSSADAVRDWIVTLEDLRERYGDDHEALRRLTGEELYANRLLELLATLPPVSSPAT*
Ga0070683_1023522022	3300005329	Corn Rhizosphere	MSKIDPPVYVFSSADAVRDWIVTLADLRERYGDDHEALRRIAGEELHANRLLELIATSAPVSSPAT*
Ga0070690_1016391481	3300005330	Switchgrass Rhizosphere	MVMIGPPVDAFSSVDAVRDWIVEQARLREHYRDDPDALRRIVGEELYANRLLELIPTLPKVAPRGAI*
Ga0070670_1000858674	3300005331	Switchgrass Rhizosphere	MVMIIDPPVNAFSSVDAVRDWIVDLAGMRERYRDDHEALRRITRGELYASRLLELIPMLPKVAALGAG*
Ga0068869_1001310365	3300005334	Miscanthus Rhizosphere	MLMIDPPVNVCSSVDAVRDWIVELADLRERYRDDHDALRRITGEELYASRLLELIPTLPPISPTGT*
Ga0068869_1003880741	3300005334	Miscanthus Rhizosphere	MMLLIDPPVNVFSSLDSVRDWIVELADLRERYRDDHEALRRITGEELYASRLLELIPTLPPISP
Ga0070689_1015304671	3300005340	Switchgrass Rhizosphere	MMATIDPPVNVFSSVDAVRDWIVTLEDLRERYRDDHEALRRIAGEELYANRLLELIAPLPPISPPAA*
Ga0070687_1005720222	3300005343	Switchgrass Rhizosphere	MMLLIDPPVNVFSSLDSVRDWIVELADLRERYRDDHEALRRITGEELYASRLLELIPTLPPISPPGHLKHA
Ga0070661_1001661683	3300005344	Corn Rhizosphere	MSKIDPPMYVFSSADAVRDWIVTLADLRERYGDDHEALRRIAGEELHANRLLELIATSAPVSSPAT*
Ga0070661_1007118443	3300005344	Corn Rhizosphere	FSSVDAVRDWIVDLAGMRERYRDDHEALRRITRGELYASRLLELIPMLPKVAPLGAG*
Ga0070669_1010109372	3300005353	Switchgrass Rhizosphere	MSKIDPPVHVFSSADAVRDWIVTLEDLRERYRDDHEALRRIAGEELYANRLLELIATLPPVSSLAT*
Ga0070688_1005097822	3300005365	Switchgrass Rhizosphere	MMATIDPPVNVFSSVDAVRDWIVTLEDLRERYRDDHEALRRIAGEELYANRLLELIATLPPVSSLAT*
Ga0070659_1009686961	3300005366	Corn Rhizosphere	VFSSADAVRDWIVTLEDLRERYGDDHEALRRLTGEELYANRLLELLATLPPVSSPAT*
Ga0070667_1018601203	3300005367	Switchgrass Rhizosphere	PPVNVFSSADALRDWIVTLEDLRERYGDDHEALRRLTGEELYANRLLELLATLPPVSSPAT*
Ga0070701_111262481	3300005438	Corn, Switchgrass And Miscanthus Rhizosphere	MMLLIDPPVNVFSSVDAVRDWIVTLEDLRERYRDDHEALRRITGEELYASRLLDLIPTLPPIS*
Ga0070700_1001804462	3300005441	Corn, Switchgrass And Miscanthus Rhizosphere	MMLLIDPPVNVFSSLDSVRDWIVQLADLRERYRDDHEALRRITGEELYASRLLELIPTLPPISPPGT*
Ga0070663_1001904622	3300005455	Corn Rhizosphere	MLMIDPPVNVCSSVDAVRDWIVELADLRERYRDDHEALRRITGEELYASRLLELIPTLPPISPPGT*
Ga0068867_1010155931	3300005459	Miscanthus Rhizosphere	MMLTIDAPVNGFSSIDAVRDWIVELEDLRERYCDDHEALRRITGEELYASRLLELIPTLPPISSPAA*
Ga0070684_1001886283	3300005535	Corn Rhizosphere	MLMIDPPVNVCSSVDAVRDWIVELADLRERYRDDHDALRRITGEELYASRLLELIPTLPPISPPGT*
Ga0070684_1008105071	3300005535	Corn Rhizosphere	MSTIDPPVNVFSSADAVRDWIVTLEDLRERYGDDHEALRRLTGEELYANRLLELLATLPLVSSPAT*
Ga0070695_1009790181	3300005545	Corn, Switchgrass And Miscanthus Rhizosphere	MLMIDPPVNVCSSVDAVRDWIVELADLRERYRDDHDALRRITGEELYASRLLELIPTLPPISSPAA*
Ga0070696_1014341361	3300005546	Corn, Switchgrass And Miscanthus Rhizosphere	MMATIDPPVNLFSSVDAVRDWIVTLEDLRERYRDDHEALRRIVGEELHANRLLELIATLPPISSPAA*
Ga0070665_1005855492	3300005548	Switchgrass Rhizosphere	MVMIGPPVDAFSSVDAVRDWIVTLEDLRERYRDDHEALRRIAGEELYANRLLELIATLPPVSSLAT*
Ga0068855_1007871741	3300005563	Corn Rhizosphere	MSTIDPPVNVFSSADAVRDWIVTLEDLRERYGDDHEALRRLTGEELYANRLLELLAT
Ga0068855_1024270542	3300005563	Corn Rhizosphere	MMLLIDPPVNVFSSLDSVRDWIVELADLRERYRDDHDALRRITGEELYASRLLELIPTLPPISPPVS*
Ga0070664_1000810905	3300005564	Corn Rhizosphere	RQMSKIDPPVYVFSSADAVRDWIVTLADLRERYGDDHEALRRIAGEELHANRLLELIATSAPVSSPAT*
Ga0070664_1001054094	3300005564	Corn Rhizosphere	MVMIIDPPVNAFSSVDAVRDWIVDLAGMRERYRDDHEALRRITRGELYASRLLELIPMLPKVAPLGAG*
Ga0070664_1001465413	3300005564	Corn Rhizosphere	MSKIDPPVYVFSSADAVRDWIVTLADLRERYNDDHEALRRIAGEELHANRLLELIATSAPVS
Ga0068854_1004846111	3300005578	Corn Rhizosphere	MIDPPVNVFSSVDAVRDWIVTLEDLRERYRDDHEALRRIAGEELYANRLLELIATLPPVSSLAT*
Ga0068852_1010998451	3300005616	Corn Rhizosphere	MMLLIDPPVNVFSSLDSVRDWIVELADLRERYRDDHEALRRITGEELYASRLLELIPTLPPISPPGHLKHAGE
Ga0068866_103305762	3300005718	Miscanthus Rhizosphere	MMLLIDPPVNVFSSVDAVRDWIVTLEDLRERYRDDHEALRRITGEELYASRLLELIPTLPPISSPAA*
Ga0068858_1024676811	3300005842	Switchgrass Rhizosphere	MSTIDPPVNVFSSADAVRDWIVTLEDLRERYGDDHEALRRLTGEELYANLLLELLATLPPVSSPAT*
Ga0068860_1002261624	3300005843	Switchgrass Rhizosphere	MMLLIDPPVNVFSSVDAVRDWIVTLEDLRARYRDDHEALRRIAGEELYANRLLELIATLPPVSSLAT*
Ga0068862_1005919792	3300005844	Switchgrass Rhizosphere	MMLMIDPPVNVFSSVDAVRDWIVELADLRERYRDDHEALRRITGGELYASRLLELIPKLPPISPPAT*
Ga0075428_1010172582	3300006844	Populus Rhizosphere	MMLMIDPPVNVFSSVDAVRDWIVQLADLRERYRDDHEALRRITGGELYASRLLELIPTLPPNSPPAT*
Ga0075421_1018440842	3300006845	Populus Rhizosphere	MMLMIDPPVNVFSSVDAVRDWIVTLEDLRERYRDDHEALRRIAGEELYANRLLELIPTLPPISSPAA*
Ga0075431_1020125642	3300006847	Populus Rhizosphere	MMATIDPPVNLFSSVDAVRDWIVALEDLRERYRDDHEALRRIAGEELYANRLLELIPTLPPISSPAA*
Ga0075434_1000679738	3300006871	Populus Rhizosphere	MATIDPPVNVFSSVDAVRDWIVTLEDLRERYRDDHEALRRIAGEELYANRLLELIPTLPPISSPAA*
Ga0105240_112942302	3300009093	Corn Rhizosphere	MLMIEPPVNVCSSVDAVRDWIVELADLRERYRDDHEALRRITGEELYASRLLELIPTLPPISPPVS*
Ga0111539_101505384	3300009094	Populus Rhizosphere	MMLMIDPPVNVFSSVDAVRDWIVQLADLRERYRDDHEALRRITGGELYASRLLELIPTLPPISPPAS*
Ga0105245_127829061	3300009098	Miscanthus Rhizosphere	MMLLIDPPVNVFSSLDSVRDWIVELADLRERYRDDHEALRRITGEELYASRLLELIPTL
Ga0075418_103088982	3300009100	Populus Rhizosphere	MMLMIDPPVNVFSSVDAVRDWIVQLADLRERYRDDHEALRRITGGELYASRLLELIPKLPPISPPAT*
Ga0111538_100665165	3300009156	Populus Rhizosphere	MMLMIDPPVNVFSSVDAVRDWIVQLADLRERYRDDHEALRRITGGELYASRLLELIPKLPPISPPA*
Ga0105241_126003761	3300009174	Corn Rhizosphere	MMLLIDPPVNVFSSVDAVRDWIVQLADLRERYRDDHEALRRITGEELYASRLLELIPTLPPISSPAA*
Ga0105237_121247241	3300009545	Corn Rhizosphere	MMLLIDPPVNVFSSLDSVRDWIVELADLRERYRDDHDALRRITGEELYASRLLELIPTLPPISPPGT*
Ga0150985_1055362141	3300012212	Avena Fatua Rhizosphere	MMLTIEAPVNGCSSVDAVRDWIVELADLRERYRDDHEALRRITGKELYANHLLELIATLPPISSPAA*
Ga0150985_1095266316	3300012212	Avena Fatua Rhizosphere	MMMLMIDPPVNVSSSVDAVRDWIVELADLRERYRDDHEALRRITGEELYANRLLDLIPTLPPI*
Ga0157333_10007991	3300012484	Soil	MLMIDPPVNVCSSVDAVRDWIVELADLRERYRDDHEALRRITGEELYASRLLELIPTLPPIS
Ga0164299_110199052	3300012958	Soil	GMMATIDRPVNVFSSVDALRDWIVTLEDLRERYGDDHEALRRIAGEELYANRLLELIATLPPISSPAA*
Ga0164305_103934194	3300012989	Soil	IDPPVNVFSSVDAVRDWIVTLEDLRERYRDDHEALRRITGEELYASRLLELIPTLSPISSPAA*
Ga0157371_116420121	3300013102	Corn Rhizosphere	PPVYVFSSADAVRDWIVTLADLRERYGDDHEALRRIAGEELHANRLLELIATLPPVSSLAT*
Ga0157374_129436801	3300013296	Miscanthus Rhizosphere	EPARRRYGTMVMMIDPPVNVFSSVDAVRDWIVDLAGMRERYRDDHEALRRITRGELYASRLLELIPMLPKVAPLGAG*
Ga0163162_134476711	3300013306	Switchgrass Rhizosphere	MMLLIDPPVNVFSSVDAVRDWIVTLEDLRERYCDDHEALRRITGEELYASRLLELIPTLPPI
Ga0157372_126501161	3300013307	Corn Rhizosphere	VFSSADAVRDWIVTLEDLRERYRDDHEALRRIAGEELYANRLLELIATLPPVSSLAT*
Ga0157372_133299081	3300013307	Corn Rhizosphere	MMLLIDPPVNVFSFLDSVRDWIVQLADLRERYRDDHEALRRITGEELYASRLLELIPTLPPISPPGT*
Ga0157375_115542612	3300013308	Miscanthus Rhizosphere	MVMMIDPPVNVFSSVDAVRDWIVDLAGMRERYRDDHEALRRITRGELYASRLLELIPMLPKVAPLGAG*
Ga0157377_100876011	3300014745	Miscanthus Rhizosphere	SWERGMMLLIDPPVNVFSSLDSVRDWIVELADLRERYRDDHDALRRITGEELYASRLLELIPTLPPISPPGT*
Ga0157377_109547821	3300014745	Miscanthus Rhizosphere	MSTIDPPVNVFSSADAVRDWIVTLEDLRERYRDDHEALRRITGEELYANRLLELL
Ga0157376_123258742	3300014969	Miscanthus Rhizosphere	MMLLIDPPVNVCSSVDAVRDWIVELADLRERYRDDHDALRRITGEELYASRLLELIPTLP
Ga0182005_10884383	3300015265	Rhizosphere	DRQMSKIDPPVYVFSSADAVRDWIVTLADLRERYGDDHEALRRLTGEELHANRLLELIATSAPVSSPAT*
Ga0132255_1014556442	3300015374	Arabidopsis Rhizosphere	MLMIDPPVNVCSSVDAVRDWIVELADLRERYRDDHDALRRITGEELYASRLLELIPTL
Ga0163161_118681682	3300017792	Switchgrass Rhizosphere	MSTIDPPVNVFSSADAVRDWIVTLEDLRERYGDDHEALRRLTGEELYANRLLELLATLPPVSSPAT
Ga0182009_101460274	3300021445	Soil	MVMMIDPPVNVFSSVDAVRDWIVDLAGMRERYRDDHEALRRITRGELYASRLLELIPMLPKVAALGAG
Ga0207656_100296963	3300025321	Corn Rhizosphere	MVMMIDPPVNVFSSVDAVRDWIVDLAGMRERYRDDHEALRRITRGELYASRLLELIPMLPKVAAPHAG
Ga0207656_100971651	3300025321	Corn Rhizosphere	MLMIDPPVNVCSSVDAVRDWIVELADLRERYRDDHEALRRITGEELYASRLLELIPTLPPISPPGT
Ga0207653_102218722	3300025885	Corn, Switchgrass And Miscanthus Rhizosphere	VNVCSSVDAVRDWIVELADLRERYRDDHDALRRITGEELYASRLLELIPTLPPISPPGT
Ga0207642_102987091	3300025899	Miscanthus Rhizosphere	MMLLIDPPVNVFSSVDAVRDWIVTLEDLRERYRDDHEALRRITGEELYASRLLELIPTLPPISSPAA
Ga0207647_108056092	3300025904	Corn Rhizosphere	MLLIDPPVNVFSSLDSVRDWIVELADLRERYRDDHEALRRITGEELYASRLLELIPTLPPISPPGT
Ga0207645_100244076	3300025907	Miscanthus Rhizosphere	MSTIDPPVNVFSSADALRDWIVTLEDLRERYGDDHEALRRLTGEELYANRLLELLATLPPVSSPAT
Ga0207662_100546302	3300025918	Switchgrass Rhizosphere	MMLLIDPPVNVFSSLDSVRDWIVELADLRERYRDDHEALRRITGEELYASRLLELIPTLPPISPPGT
Ga0207657_102650652	3300025919	Corn Rhizosphere	MSTIDPPVNVFSSADALRDWIVTLEDLRERYGDDHEALRRLTGEELYANRLLELL
Ga0207649_101392383	3300025920	Corn Rhizosphere	MLMIDPPVNVCSSVDAVRDWIVELADLRERYRDDHDALRRITGEELYASRLLELIPTLPPISPPVS
Ga0207649_105661363	3300025920	Corn Rhizosphere	MILDPPVNAFSSVDAVRDWIVDLAGMRERYRDDHEALRRITRGELYASRLLELIPMLPKVAPLGAG
Ga0207649_106117482	3300025920	Corn Rhizosphere	MSKIDPPMYVFSSADAVRDWIVTLADLRERYGDDHEALRRIAGEELHANRLLELIATSAPVSSPAT
Ga0207650_102050311	3300025925	Switchgrass Rhizosphere	MSKIDPPVYVFSSADAVRDWIVTLADLRERYGDDHEALRRIAGEELHANRLLELIATSAPVSSPAT
Ga0207650_103400942	3300025925	Switchgrass Rhizosphere	MMLLIDPPVNVFSSLDSVRDWIVELADLRERYRDDHEALRRITGEELYASRLLELIPTLPPISPPGHLKH
Ga0207650_113355441	3300025925	Switchgrass Rhizosphere	MIIDPPVNAFSSVDAVRDWIVDLAGMRERYRDDHEALRRITRGELYASRLLELIPMLPKVAALGAG
Ga0207644_101305894	3300025931	Switchgrass Rhizosphere	SIDAVRDWIVQLADLRERYCDDHEALRRITGKELYANHLLELISTLPPISPPAAKDARE
Ga0207644_113013501	3300025931	Switchgrass Rhizosphere	MMLLIDPPVNVFSSVDAVRDWIVTLEDLRERYRDDHEALRRIAGEELYANRLLELIPTLPKVAPRGAI
Ga0207690_101507273	3300025932	Corn Rhizosphere	MMLLIDPPVNVFSSLDSVRDWIVELADLRERYRDDHDALRRITGEELYASRLLELIPTLPPISPPVS
Ga0207690_101631744	3300025932	Corn Rhizosphere	MMATIDPPVNVFSSVDAVRDWIVTLEDLRERYRDDHEALRRIAGEELYANRLLELIAPLPPISPPAA
Ga0207690_105322102	3300025932	Corn Rhizosphere	MSKIDPPVHVFSSADAVRDWIVTLEDLRERYGDDHEALRRLTGEELYANRLLELLATLPPVSSPAT
Ga0207690_112796051	3300025932	Corn Rhizosphere	MVMIGPPVDAFSSVDAVRDWIVELARLREHYRDDPDALRRIVGEELYANRLLELIPTLPKVAPRGAI
Ga0207706_100359814	3300025933	Corn Rhizosphere	MMLLIDPPVNVFSSLDSVRDWIVELADLRERYRDDHEALRRITGEELYASGLLELIPTLPPISPPGT
Ga0207706_102325031	3300025933	Corn Rhizosphere	MSKIDPPVHVFSSADAVRDWIVTLEDLRERYRDDHEALRRIAGEELYANRLLELIATLPPVSSLAT
Ga0207670_105707762	3300025936	Switchgrass Rhizosphere	MMLLIDPPVNVFSSVDAVRDWIVTLEDLRERYRDDHEALRRIAGEELYANRLLELIAPLPPISPPAA
Ga0207669_116875781	3300025937	Miscanthus Rhizosphere	MLTIDSPVNGFSSIDAVRDWIVELEDLRERYCDDHEALRRITGEELYANHLLELISTLRPLSLPAAK
Ga0207689_1001957113	3300025942	Miscanthus Rhizosphere	MMLLIDPPVNVFSSLDSVRDWIVELADLRERYRDDHDALRRITGEELYASRLLELIPTLPPISPTGT
Ga0207661_101722354	3300025944	Corn Rhizosphere	MLMIDPPVNVFSSLDSVRDWIVQLADLRERYRDDHEALRRITGEELYASRLLELIPTLPPISPGT
Ga0207661_103317714	3300025944	Corn Rhizosphere	MVMIIDPPVNAFSSVDAVRDWIVDLAGMRERYRDDHEALRRITRGELYASRLLELIPMLPKVAPLGAG
Ga0207679_100956814	3300025945	Corn Rhizosphere	MVMIIDPPVNAFSSVDAVRDWIVDLAGMRERYRDDHEALRRITRGELYASRLLELIPMLPKVAALGAG
Ga0207651_108278802	3300025960	Switchgrass Rhizosphere	MSTIDPPVNVFSSADAVRDWIVTLEDLRERYRDDHEALRRIAGEELYANRLLELIATLPPVSSLAT
Ga0207678_101807453	3300026067	Corn Rhizosphere	MMLLIDPPVNVFSSLDSVRDWIVELADLRERYRDDHEALRRITRGELYASRLLELIPMLPKVAAPHAG
Ga0207708_101288111	3300026075	Corn, Switchgrass And Miscanthus Rhizosphere	MMLMIDPPVNVFSSVDAVRDWIVELADLRERYRDDHEALRRITGEELYASRLLELIPTLPPISPPGT
Ga0207708_114190132	3300026075	Corn, Switchgrass And Miscanthus Rhizosphere	MMLLIDPPVNVFSSVDAVRDWIVTLEDLRERYRDDHEALRRITGEELYASRLLDLIPTLPPIS
Ga0207676_109718551	3300026095	Switchgrass Rhizosphere	MSTIDPPVNVFSSADAVRDWIVTLEDLRERYGDDHEALRRLTGEELYANRLLELL
Ga0207674_102043651	3300026116	Corn Rhizosphere	GIRQMSTIGPPVNVFSSADAVRDWIVTLEDLRERYGDDHEALRRLTGEELYANRLLELLATLPPVSSPAT
Ga0209382_114873221	3300027909	Populus Rhizosphere	EGGTGRMATIDPPVNVFSSVDAVRDWIVTLEDLRERYRDDHEALRRIAGEELYANRLLELIPTLPPISSPAA
Ga0268264_123293671	3300028381	Switchgrass Rhizosphere	SWERGTMLMIDPPVNVCSSVDAVRDWIVELADLRERYRDDHEALRRITGEELYASRLLELIPTLPPISPPGT
Ga0247826_112923271	3300030336	Soil	MMATIDPPVNVFSSVDAVRDWIVTLEDLRERYRDDHEALRRIAGEELHANRLLELIPTLPPISSPAA
Ga0307408_10000178219	3300031548	Rhizosphere	MMLMIDPPVNVFSSIDAVRDWIVQLADLRERYRDDHEALRRITGGELYASRLLELVPTRPPISPPAT
Ga0307468_1018429402	3300031740	Hardwood Forest Soil	MMATIESPVNVFSSVDAVRDWIVTLEDLRERYRDDHEALRRIAGEELYANHLLELIPTLPPISSPAA
Ga0310904_102171903	3300031854	Soil	PVNVFSSVDAVRDWIVTLEDLRERYRDDHEALRRITGEELYASRLLDLIPTLPPIS
Ga0310891_103322981	3300031913	Soil	MMLLIDPPVNVFSSVDAVRDWIVELADLRERYRDDHDALRRITGEELYASRLLELIPTLPPISPPVS
Ga0308175_1002338835	3300031938	Soil	MIPTIDPPVNVSSSVDAVRDWVVELAALRERHRDDHEALRRITGDELYANRLLDLIALAPKVAPPSAT
Ga0310889_103181961	3300032179	Soil	VNVFSSVDAVRDWIVTLEDLRERYRDDHEALRRITGEELYASRLLDLIPTLPPIS
Ga0310896_102963772	3300032211	Soil	MLMIDPPVNVCSSVDAVRDWVVELADLRERYRDDHDALRRITGEELYASRLLDLIPTLPPIS
Ga0310810_100115901	3300033412	Soil	MVMIIDPPVNAFSSVDAVRDWIVDLAGMRERYRDDHEALRRITRGELYASRLLELIPMLPKVAAL
Ga0310810_109170051	3300033412	Soil	MSTIGPPVNVFSSADAVRDWIVTLEDLRERYGDDHEALRRLTGEELYANRLLELLATLPPVSSPAT

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F073217

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Hidden Markov Model


Click on a Sequence Logo column to get its information.
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