Metagenome / Metatranscriptome Family F073206

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

Select file to download:
Download

Overview

Basic Information
Family ID	F073206
Family Type	Metagenome / Metatranscriptome
Number of Sequences	120
Average Sequence Length	60 residues
Representative Sequence	LLRAGMFYLDRVRDQVSIFQILPAVGMREFYASCVVLLALGVVASALASLLALRKYVRI
Number of Associated Samples	88
Number of Associated Scaffolds	120

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	0.00 %
% of genes near scaffold ends (potentially truncated)	99.17 %
% of genes from short scaffolds (< 2000 bps)	90.00 %
Associated GOLD sequencing projects	85
AlphaFold2 3D model prediction	No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign

Most Common Taxonomy
Group	Unclassified (54.167 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (24.167 % of family members)
Environment Ontology (ENVO)	Unclassified (30.000 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (31.667 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Select alignment to view:

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 62.71% β-sheet: 0.00% Coil/Unstructured: 37.29%
Feature Viewer

Powered by Feature Viewer

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 120 Family Scaffolds
PF01668	SmpB	79.17
PF13460	NAD_binding_10	10.00
PF08282	Hydrolase_3	3.33
PF00589	Phage_integrase	1.67
PF14659	Phage_int_SAM_3	0.83
PF12697	Abhydrolase_6	0.83
PF08386	Abhydrolase_4	0.83
PF05368	NmrA	0.83
PF13683	rve_3	0.83
PF13649	Methyltransf_25	0.83
PF00561	Abhydrolase_1	0.83

COG ID	Name	Functional Category	% Frequency in 120 Family Scaffolds
COG0691	tmRNA-binding protein	Posttranslational modification, protein turnover, chaperones [O]	79.17
COG0560	Phosphoserine phosphatase	Amino acid transport and metabolism [E]	3.33
COG0561	Hydroxymethylpyrimidine pyrophosphatase and other HAD family phosphatases	Coenzyme transport and metabolism [H]	3.33
COG1877	Trehalose-6-phosphate phosphatase	Carbohydrate transport and metabolism [G]	3.33
COG2217	Cation-transporting P-type ATPase	Inorganic ion transport and metabolism [P]	3.33
COG3769	Mannosyl-3-phosphoglycerate phosphatase YedP/MpgP, HAD superfamily	Carbohydrate transport and metabolism [G]	3.33

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	54.17 %
All Organisms	root	All Organisms	45.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	54.17 %
cellular organisms	root	All Organisms → cellular organisms	45.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	54.17 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	45.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	54.17 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	38.33 %
unclassified Bacteria	no rank	All Organisms → cellular organisms → Bacteria → unclassified Bacteria	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	54.17 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	38.33 %
bacterium	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	54.17 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	18.33 %
bacterium	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	54.17 %
Pseudonocardiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales	2.50 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1.67 %
Propionibacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales	0.83 %
Corynebacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales	0.83 %
bacterium	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	54.17 %
Pseudonocardiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	2.50 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1.67 %
Mycobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae	0.83 %
Kribbellaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Kribbellaceae	0.83 %
bacterium	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	54.17 %
Pseudonocardiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	2.50 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1.67 %
Kribbella	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Kribbellaceae → Kribbella	0.83 %
Mycobacterium	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium	0.83 %
bacterium	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	54.17 %
Pseudonocardiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	2.50 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1.67 %
unclassified Kribbella	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Kribbellaceae → Kribbella → unclassified Kribbella	0.83 %
Mycobacterium	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium	0.83 %
bacterium	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	54.17 %
Pseudonocardiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	2.50 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1.67 %
Kribbella sp. VKM Ac-2500	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Kribbellaceae → Kribbella → unclassified Kribbella → Kribbella sp. VKM Ac-2500	0.83 %
Mycobacterium	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium	0.83 %
bacterium	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	0.83 %

Visualization

Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300003373\|JGI25407J50210_10024011	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Kribbellaceae → Kribbella → unclassified Kribbella → Kribbella sp. VKM Ac-2500	1583	Open in IMG/M
3300003373\|JGI25407J50210_10036534	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1264	Open in IMG/M
3300003373\|JGI25407J50210_10120687	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	646	Open in IMG/M
3300004463\|Ga0063356_104215424	Not Available	619	Open in IMG/M
3300004463\|Ga0063356_105128886	Not Available	563	Open in IMG/M
3300005446\|Ga0066686_10593433	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	753	Open in IMG/M
3300005562\|Ga0058697_10039781	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1758	Open in IMG/M
3300005843\|Ga0068860_100416968	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium	1330	Open in IMG/M
3300005981\|Ga0081538_10031285	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	3594	Open in IMG/M
3300006845\|Ga0075421_101918060	Not Available	634	Open in IMG/M
3300006852\|Ga0075433_10046541	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	3773	Open in IMG/M
3300006852\|Ga0075433_11733365	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	538	Open in IMG/M
3300006854\|Ga0075425_101182119	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	869	Open in IMG/M
3300007790\|Ga0105679_10692345	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	1249	Open in IMG/M
3300009100\|Ga0075418_12959450	Not Available	518	Open in IMG/M
3300009789\|Ga0126307_10473309	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1011	Open in IMG/M
3300009789\|Ga0126307_10693600	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	821	Open in IMG/M
3300009789\|Ga0126307_10734213	Not Available	797	Open in IMG/M
3300009797\|Ga0105080_1034505	Not Available	586	Open in IMG/M
3300009804\|Ga0105063_1016590	Not Available	839	Open in IMG/M
3300009810\|Ga0105088_1036930	Not Available	802	Open in IMG/M
3300009836\|Ga0105068_1129082	Not Available	510	Open in IMG/M
3300009840\|Ga0126313_10045598	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	3071	Open in IMG/M
3300009840\|Ga0126313_10126743	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1906	Open in IMG/M
3300010037\|Ga0126304_10943456	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	587	Open in IMG/M
3300010040\|Ga0126308_10356058	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	970	Open in IMG/M
3300010040\|Ga0126308_10521694	Not Available	804	Open in IMG/M
3300010042\|Ga0126314_10146274	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1643	Open in IMG/M
3300010042\|Ga0126314_10860248	Not Available	669	Open in IMG/M
3300010044\|Ga0126310_10237573	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1221	Open in IMG/M
3300010044\|Ga0126310_11234751	Not Available	601	Open in IMG/M
3300010045\|Ga0126311_10041950	All Organisms → cellular organisms → Bacteria	2892	Open in IMG/M
3300010166\|Ga0126306_10032324	All Organisms → cellular organisms → Bacteria	3545	Open in IMG/M
3300010166\|Ga0126306_10095562	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2139	Open in IMG/M
3300010166\|Ga0126306_10114175	All Organisms → cellular organisms → Bacteria	1969	Open in IMG/M
3300010999\|Ga0138505_100041985	Not Available	648	Open in IMG/M
3300012204\|Ga0137374_10207054	All Organisms → cellular organisms → Bacteria	1684	Open in IMG/M
3300012204\|Ga0137374_10504407	Not Available	939	Open in IMG/M
3300012349\|Ga0137387_10611177	Not Available	790	Open in IMG/M
3300012350\|Ga0137372_10883451	Not Available	635	Open in IMG/M
3300012353\|Ga0137367_10458676	Not Available	900	Open in IMG/M
3300012354\|Ga0137366_10493691	Not Available	885	Open in IMG/M
3300012355\|Ga0137369_10258412	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1313	Open in IMG/M
3300012360\|Ga0137375_11300080	Not Available	549	Open in IMG/M
3300012513\|Ga0157326_1084430	Not Available	525	Open in IMG/M
3300012939\|Ga0162650_100005030	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1530	Open in IMG/M
3300014487\|Ga0182000_10069605	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1106	Open in IMG/M
3300014487\|Ga0182000_10076365	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1070	Open in IMG/M
3300014487\|Ga0182000_10103097	Not Available	961	Open in IMG/M
3300014488\|Ga0182001_10265612	Not Available	673	Open in IMG/M
3300017965\|Ga0190266_11179506	Not Available	529	Open in IMG/M
3300018054\|Ga0184621_10039159	All Organisms → cellular organisms → Bacteria	1547	Open in IMG/M
3300018066\|Ga0184617_1049912	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1060	Open in IMG/M
3300018465\|Ga0190269_11491168	Not Available	556	Open in IMG/M
3300019377\|Ga0190264_11654669	Not Available	567	Open in IMG/M
3300019869\|Ga0193705_1094595	Not Available	554	Open in IMG/M
3300019875\|Ga0193701_1051840	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	830	Open in IMG/M
3300020005\|Ga0193697_1093262	Not Available	724	Open in IMG/M
3300022195\|Ga0222625_1695107	Not Available	657	Open in IMG/M
3300022534\|Ga0224452_1143520	Not Available	735	Open in IMG/M
3300022534\|Ga0224452_1174134	Not Available	662	Open in IMG/M
3300022756\|Ga0222622_10110760	Not Available	1707	Open in IMG/M
3300025928\|Ga0207700_11671952	Not Available	562	Open in IMG/M
3300025961\|Ga0207712_10243937	All Organisms → cellular organisms → Bacteria	1449	Open in IMG/M
3300027187\|Ga0209869_1035421	Not Available	580	Open in IMG/M
3300027490\|Ga0209899_1042901	Not Available	953	Open in IMG/M
3300027561\|Ga0209887_1018249	Not Available	1717	Open in IMG/M
3300027718\|Ga0209795_10179869	Not Available	595	Open in IMG/M
3300028587\|Ga0247828_10575504	Not Available	682	Open in IMG/M
3300028710\|Ga0307322_10017290	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1639	Open in IMG/M
3300028711\|Ga0307293_10023529	Not Available	1830	Open in IMG/M
3300028717\|Ga0307298_10117943	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	760	Open in IMG/M
3300028719\|Ga0307301_10164653	Not Available	715	Open in IMG/M
3300028720\|Ga0307317_10057342	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1256	Open in IMG/M
3300028721\|Ga0307315_10079648	Not Available	944	Open in IMG/M
3300028721\|Ga0307315_10189049	Not Available	635	Open in IMG/M
3300028755\|Ga0307316_10026288	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1882	Open in IMG/M
3300028771\|Ga0307320_10223827	Not Available	738	Open in IMG/M
3300028796\|Ga0307287_10087134	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1173	Open in IMG/M
3300028807\|Ga0307305_10044394	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2046	Open in IMG/M
3300028810\|Ga0307294_10317022	Not Available	569	Open in IMG/M
3300028875\|Ga0307289_10270202	Not Available	699	Open in IMG/M
3300028875\|Ga0307289_10448497	Not Available	530	Open in IMG/M
3300028876\|Ga0307286_10032311	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1730	Open in IMG/M
3300028876\|Ga0307286_10404175	Not Available	512	Open in IMG/M
3300028878\|Ga0307278_10436079	Not Available	574	Open in IMG/M
3300028880\|Ga0307300_10199012	Not Available	648	Open in IMG/M
3300028880\|Ga0307300_10285324	Not Available	555	Open in IMG/M
3300028881\|Ga0307277_10229439	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	817	Open in IMG/M
3300030516\|Ga0268255_10149255	Not Available	685	Open in IMG/M
3300031092\|Ga0308204_10137129	Not Available	713	Open in IMG/M
3300031548\|Ga0307408_100170706	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1736	Open in IMG/M
3300031731\|Ga0307405_10295321	Not Available	1226	Open in IMG/M
3300031731\|Ga0307405_11002579	Not Available	712	Open in IMG/M
3300031824\|Ga0307413_10400267	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	1075	Open in IMG/M
3300031852\|Ga0307410_10105520	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2028	Open in IMG/M
3300031852\|Ga0307410_10987081	Not Available	725	Open in IMG/M
3300031901\|Ga0307406_10333546	Not Available	1178	Open in IMG/M
3300031903\|Ga0307407_10020064	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3416	Open in IMG/M
3300031911\|Ga0307412_10101439	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2036	Open in IMG/M
3300031995\|Ga0307409_100190881	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	1823	Open in IMG/M
3300031995\|Ga0307409_102682587	Not Available	526	Open in IMG/M
3300032002\|Ga0307416_100004727	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	8257	Open in IMG/M
3300032002\|Ga0307416_100161351	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2072	Open in IMG/M
3300032002\|Ga0307416_100324153	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1544	Open in IMG/M
3300032002\|Ga0307416_103441642	Not Available	529	Open in IMG/M
3300032004\|Ga0307414_10806269	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	856	Open in IMG/M
3300032004\|Ga0307414_11011484	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	765	Open in IMG/M
3300032004\|Ga0307414_11568642	Not Available	613	Open in IMG/M
3300032005\|Ga0307411_11754415	Not Available	575	Open in IMG/M
3300032005\|Ga0307411_11766616	Not Available	573	Open in IMG/M
3300032080\|Ga0326721_10039565	All Organisms → cellular organisms → Bacteria	1976	Open in IMG/M
3300032080\|Ga0326721_10790850	Not Available	593	Open in IMG/M
3300032126\|Ga0307415_100676321	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	928	Open in IMG/M
3300032159\|Ga0268251_10153086	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	871	Open in IMG/M
3300032159\|Ga0268251_10500746	Not Available	543	Open in IMG/M
3300034150\|Ga0364933_126345	Not Available	655	Open in IMG/M
3300034172\|Ga0334913_019591	All Organisms → cellular organisms → Bacteria	1518	Open in IMG/M
3300034172\|Ga0334913_142602	Not Available	512	Open in IMG/M
3300034377\|Ga0334931_188214	Not Available	504	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	66.67%
Host-Associated	Host-Associated	33.33%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	61.67%
Plants	Host-Associated → Plants	33.33%
Aquatic	Environmental → Aquatic	5.00%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	59.17%
Rhizosphere	Host-Associated → Plants → Rhizosphere	22.50%
Sediment	Environmental → Aquatic → Sediment	4.17%
Phylloplane	Host-Associated → Plants → Phylloplane	4.17%
Rhizoplane	Host-Associated → Plants → Rhizoplane	3.33%
Roots	Host-Associated → Plants → Roots	3.33%
Agricultural Field	Environmental → Terrestrial → Agricultural Field	1.67%
Freshwater	Environmental → Aquatic → Freshwater	0.83%
Floodplain	Environmental → Terrestrial → Floodplain	0.83%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	51.67%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	22.50%
Sand	Environmental → Terrestrial → Soil → Sand	6.67%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	4.17%
Unclassified	Host-Associated → Plants → Phylloplane → Unclassified	4.17%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	3.33%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	3.33%
Unclassified	Environmental → Terrestrial → Agricultural Field → Unclassified	1.67%
Sediment	Environmental → Aquatic → Freshwater → Sediment	0.83%
Loam	Environmental → Terrestrial → Soil → Loam	0.83%
Sediment	Environmental → Terrestrial → Floodplain → Sediment	0.83%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	47.50%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	22.50%
Unclassified	Environmental → Terrestrial → Soil → Sand → Unclassified	5.83%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	4.17%
Unclassified	Host-Associated → Plants → Phylloplane → Unclassified → Unclassified	4.17%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	3.33%
Unclassified	Host-Associated → Plants → Roots → Rhizosphere → Unclassified	3.33%
Desert	Environmental → Terrestrial → Soil → Unclassified → Desert	2.50%
Unclassified	Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified	1.67%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	0.83%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	0.83%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	0.83%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	0.83%
Desert	Environmental → Terrestrial → Soil → Sand → Desert	0.83%
Unclassified	Environmental → Terrestrial → Floodplain → Sediment → Unclassified	0.83%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	24.17%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	17.50%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	13.33%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	6.67%
Groundwater Sand	Environmental → Terrestrial → Soil → Sand → Unclassified → Groundwater Sand	5.83%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	4.17%
Agave	Host-Associated → Plants → Phylloplane → Unclassified → Unclassified → Agave	4.17%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	3.33%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Unclassified → Tabebuia Heterophylla Rhizosphere	3.33%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	2.50%
Sub-Biocrust Soil	Environmental → Terrestrial → Soil → Unclassified → Desert → Sub-Biocrust Soil	2.50%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	1.67%
Soil	Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified → Soil	1.67%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	1.67%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	0.83%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	0.83%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	0.83%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	0.83%
Soil	Environmental → Terrestrial → Soil → Sand → Desert → Soil	0.83%
Sediment	Environmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment	0.83%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.83%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Rhizosphere	0.83%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.83%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300003373	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1	Host-Associated	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300005446	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_135	Environmental	Open in IMG/M
3300005562	Agave microbial communities from Guanajuato, Mexico - As.Ma.e	Host-Associated	Open in IMG/M
3300005843	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2	Host-Associated	Open in IMG/M
3300005981	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1	Host-Associated	Open in IMG/M
3300006845	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5	Host-Associated	Open in IMG/M
3300006852	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2	Host-Associated	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300007790	Microbial communities of desert soil contaminated with blood from dead anthrax infected zebra in Etosha National Park, Namibia. Combined Assembly of 14 sequencing projects	Environmental	Open in IMG/M
3300009100	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2	Host-Associated	Open in IMG/M
3300009789	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot28	Environmental	Open in IMG/M
3300009797	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S2_10_20	Environmental	Open in IMG/M
3300009804	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N3_30_40	Environmental	Open in IMG/M
3300009810	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S3_20_30	Environmental	Open in IMG/M
3300009836	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N1_10_20	Environmental	Open in IMG/M
3300009840	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105A	Environmental	Open in IMG/M
3300010037	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot25	Environmental	Open in IMG/M
3300010040	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot55	Environmental	Open in IMG/M
3300010042	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105B	Environmental	Open in IMG/M
3300010044	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot60	Environmental	Open in IMG/M
3300010045	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot61	Environmental	Open in IMG/M
3300010166	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot27	Environmental	Open in IMG/M
3300010999	Agricultural soil microbial communities from Tamara ranch near Red Deer, Alberta, Canada - d1t3i015	Environmental	Open in IMG/M
3300012204	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_100_16 metaG	Environmental	Open in IMG/M
3300012349	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Sage2_R_115_16 metaG	Environmental	Open in IMG/M
3300012350	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_60_16 metaG	Environmental	Open in IMG/M
3300012353	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_80_16 metaG	Environmental	Open in IMG/M
3300012354	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_60_16 metaG	Environmental	Open in IMG/M
3300012355	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_113_16 metaG	Environmental	Open in IMG/M
3300012360	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_113_16 metaG	Environmental	Open in IMG/M
3300012513	Arabidopsis rhizosphere microbial communities from North Carolina - M.Oy.2.old.250510	Host-Associated	Open in IMG/M
3300012939	Agricultural soil microbial communities from Tamara ranch near Red Deer, Alberta, Canada - d1t1i015	Environmental	Open in IMG/M
3300014487	Bulk soil microbial communities from Mexico - Magueyal (Ma) metaG	Environmental	Open in IMG/M
3300014488	Bulk soil microbial communities from Mexico - San Felipe (SF) metaG	Environmental	Open in IMG/M
3300017965	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 220 T	Environmental	Open in IMG/M
3300018054	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_30_b1	Environmental	Open in IMG/M
3300018066	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_5_b1	Environmental	Open in IMG/M
3300018465	Populus adjacent soil microbial communities from riparian zone of Blue River, Arizona, USA - 249 IS	Environmental	Open in IMG/M
3300019377	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 112 T	Environmental	Open in IMG/M
3300019869	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U3m2	Environmental	Open in IMG/M
3300019875	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U3s2	Environmental	Open in IMG/M
3300020005	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L3m2	Environmental	Open in IMG/M
3300022195	Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300022534	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_30_b1	Environmental	Open in IMG/M
3300022756	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5_b1	Environmental	Open in IMG/M
3300025928	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025961	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300027187	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S1_50_60 (SPAdes)	Environmental	Open in IMG/M
3300027490	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S1_0_10 (SPAdes)	Environmental	Open in IMG/M
3300027561	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N1_30_40 (SPAdes)	Environmental	Open in IMG/M
3300027718	Agave microbial communities from Guanajuato, Mexico - Or.Ma.rz (SPAdes)	Host-Associated	Open in IMG/M
3300028587	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day3	Environmental	Open in IMG/M
3300028710	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_380	Environmental	Open in IMG/M
3300028711	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_150	Environmental	Open in IMG/M
3300028717	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_158	Environmental	Open in IMG/M
3300028719	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_182	Environmental	Open in IMG/M
3300028720	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_357	Environmental	Open in IMG/M
3300028721	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_355	Environmental	Open in IMG/M
3300028755	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_356	Environmental	Open in IMG/M
3300028771	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_369	Environmental	Open in IMG/M
3300028796	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_141	Environmental	Open in IMG/M
3300028807	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_186	Environmental	Open in IMG/M
3300028810	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_151	Environmental	Open in IMG/M
3300028875	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_143	Environmental	Open in IMG/M
3300028876	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_140	Environmental	Open in IMG/M
3300028878	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_117	Environmental	Open in IMG/M
3300028880	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_181	Environmental	Open in IMG/M
3300028881	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_116	Environmental	Open in IMG/M
3300030516	Agave microbial communities from Guanajuato, Mexico - Or.Ma.rz (v2)	Host-Associated	Open in IMG/M
3300031092	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_367 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031548	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3	Host-Associated	Open in IMG/M
3300031731	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1	Host-Associated	Open in IMG/M
3300031824	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2	Host-Associated	Open in IMG/M
3300031852	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3	Host-Associated	Open in IMG/M
3300031901	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2	Host-Associated	Open in IMG/M
3300031903	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1	Host-Associated	Open in IMG/M
3300031911	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1	Host-Associated	Open in IMG/M
3300031995	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2	Host-Associated	Open in IMG/M
3300032002	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3	Host-Associated	Open in IMG/M
3300032004	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3	Host-Associated	Open in IMG/M
3300032005	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1	Host-Associated	Open in IMG/M
3300032080	Soil microbial communities from Southern Great Plains, Lamont, Oklahoma, United States - SGP_1_2016	Environmental	Open in IMG/M
3300032126	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2	Host-Associated	Open in IMG/M
3300032159	Agave microbial communities from Guanajuato, Mexico - As.Ma.e (v2)	Host-Associated	Open in IMG/M
3300034150	Sediment microbial communities from East River floodplain, Colorado, United States - 25_j17	Environmental	Open in IMG/M
3300034172	Sub-biocrust soil microbial communities from Mojave Desert, California, United States - 9HMS	Environmental	Open in IMG/M
3300034377	Sub-biocrust soil microbial communities from Mojave Desert, California, United States - 27HNS	Environmental	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI25407J50210_100240111	3300003373	Tabebuia Heterophylla Rhizosphere	DRVRDQVSIFQILPAVGMREFYASCVVLLALGVVASALASLLALRKYVRI*
JGI25407J50210_100365341	3300003373	Tabebuia Heterophylla Rhizosphere	LLRAGMFYLDRVRDQVSIFQILPAVGMREFYASCVVLLALGVVASALASLLALRKYVRI*
JGI25407J50210_101206871	3300003373	Tabebuia Heterophylla Rhizosphere	PFLAEGVVAGLLGTLVAFGLLRAGMFYLDRVRSQVSIFQILPAVGMREFYSSCVVLLILGVVASGAASLLALRKYVRI*
Ga0063356_1042154241	3300004463	Arabidopsis Thaliana Rhizosphere	LDRVRDQVSIFQILPAVGMREFYASCIVLLALGVVASALASLLALRKYVRI*
Ga0063356_1051288861	3300004463	Arabidopsis Thaliana Rhizosphere	VRNQVSIFQILPAVGMREFYSSCIVLLALGVVASALASLLALRKYVRI*
Ga0066686_105934331	3300005446	Soil	FLAEGVFAGILGAAVSFVLLRAGMYYLERVRDQVAIFKVLPIVGMSDFYSSWLILLAFGVIASAIASLLALRKYVRV*
Ga0058697_100397813	3300005562	Agave	AVGMREFYSSCIVLLALGVVASALASLLALRKYVRI*
Ga0068860_1004169683	3300005843	Switchgrass Rhizosphere	VAGLLGTLIAFALLRAGMFYLDRVRDQVSIFQILPAVGMREFYASCIVLLALGVVASALASLLALRKYVRI*
Ga0081538_100312855	3300005981	Tabebuia Heterophylla Rhizosphere	LLGTLIAFGLLRAGMFYLDRVRDQVSIFQILPAVGMREFYASCVVLLALGVVASALASLLALRKYVRI*
Ga0075421_1019180601	3300006845	Populus Rhizosphere	LRAGMFYLDRVRDQVSIFQILPAVGMREFYASCVVLLALGVVASGLASLLALRKYVRI*
Ga0075433_100465411	3300006852	Populus Rhizosphere	LRSGMFYLDRVRNQVSIFQILPAVGMREFYSSCIVLLALGVVASALASLLALRKYVRI*
Ga0075433_117333651	3300006852	Populus Rhizosphere	GTLIAFGLLRAGMFYLDRVRNQVSIFQILPAVGMREFYSSCIVLLALGVVASALASLLALRKYVRI*
Ga0075425_1011821191	3300006854	Populus Rhizosphere	YLDRVRNQVSIFQILPAVGMREFYSSCIVLLALGVVASALASLLALRKYVRI*
Ga0105679_106923451	3300007790	Soil	RAGMLYLDRVRDQVSIFQILPAVGMREFYASCVVLLALGVVASALASLLALRKYVRI*
Ga0075418_129594501	3300009100	Populus Rhizosphere	RVRDQVSIFQILPAVGMREFYASCIVLLALGVVASALASLLALRKYVRI*
Ga0126307_104733093	3300009789	Serpentine Soil	DQVSIFQILPAVGMREFYSSCIVLLGLGVVASALASLLALRKYVRI*
Ga0126307_106936001	3300009789	Serpentine Soil	DQVSIFQILPAVGMREFYASCIVLLALGVVASALASLLALRKYVRI*
Ga0126307_107342133	3300009789	Serpentine Soil	ALLRSGMFYLDRVRDQVSIFQILPAVGMREFYASCLVLLALGVVASALASLLALRKYVRI
Ga0105080_10345052	3300009797	Groundwater Sand	SIFQILPAVGMREFYSSCIVLLALGVIASAVASLLALRKYVRI*
Ga0105063_10165902	3300009804	Groundwater Sand	LLGTLVAFGLLRAGMFYLDRVRNQVSIFQILPAVGMREFYSSCIVLLALGVLASAVASLLALRKYVRI*
Ga0105088_10369302	3300009810	Groundwater Sand	AGMFYLDRVRNQVSIFQVLPAVGMREFYSSCIVLLLLGVVASAVASLLALRKYVRI*
Ga0105068_11290821	3300009836	Groundwater Sand	FLAEGVVAGLLGTLVAFGLLRAGMFYLDRVRNQVSIFQVLPAVGMREFYSSCIVLLLLGVVASAVASLLALRKYVRI*
Ga0126313_100455981	3300009840	Serpentine Soil	AVGMREFYASCVVLLALGVVASALASLLALRKYVRI*
Ga0126313_101267431	3300009840	Serpentine Soil	FGLLRSGMFYLDRVRDQVSIFQILPAVGMREFYSSCIVLLALGVIASALASLLALRKYVRI*
Ga0126304_109434562	3300010037	Serpentine Soil	GLLGTLIAFALLRAGMFYLDRVRDQVSIFQILPAVGMREFYSSCIVLLGLGVVASALASLLALRKYVRI*
Ga0126308_103560581	3300010040	Serpentine Soil	RVRDQVSIFQILPAVGMREFYASCLVLLVLGVVASALASLLALRKYVRI*
Ga0126308_105216941	3300010040	Serpentine Soil	LDRVRDQVSIFQILPAVGMREFYASCLVLLVLGVVASALASLLALRKYVRI*
Ga0126314_101462741	3300010042	Serpentine Soil	FGLLRTGMFYLDRVRSQVSIFQILPAVGMREFYSSCIVLLGLGVVASALASLLALRKYVRI*
Ga0126314_108602481	3300010042	Serpentine Soil	FGLLRTGMFYLDRVRSQVSIFQILPAVGMREFYSSCIVLLALGVVASALASLLALRKYVRI*
Ga0126310_102375733	3300010044	Serpentine Soil	VVAGLLGTLIAFGLLRSGMFYLDRVRDQVSIFQILPAVGMREFYASCLVLLVLGVVASALASLLALRKYVRI*
Ga0126310_112347512	3300010044	Serpentine Soil	WLPFLAEGVVAGLLGTLIAFGLLRSGMFYLDRVRDQVSIFQILPAVGMREFYSSCIVLLALGVVASALASLLALRKYVRI*
Ga0126311_100419501	3300010045	Serpentine Soil	LLRAGMFYLDRVRDQVSIFQILPAVGMREFYASCLVLLVLGVVASALASLLALRKYVRI*
Ga0126306_100323244	3300010166	Serpentine Soil	LLRAGMFYLDRVREQVSIFQILPAVGMREFYASCIVLLALGVVASGLASLLALRKYVRI*
Ga0126306_100955624	3300010166	Serpentine Soil	LPFLAEGVVAGLLGTLIAFALLRAGMFYLDRVRDQVSIFQILPAVGMREFYASCVVLLALGVVASALASLLALRKYVRI*
Ga0126306_101141751	3300010166	Serpentine Soil	GMFYLDRVRNQVSIFQILPAVGMREFYSSCIVLLGLGVVASALASLLALRKYVRI*
Ga0138505_1000419852	3300010999	Soil	AFGLLRAGMFYLDRVRNQVSIFQILPAVGMREFYSSCIVLLALGVVASALASLLALRKYVRI*
Ga0137374_102070543	3300012204	Vadose Zone Soil	FGLLGAGMLYLDRVRHEVSILQLLPIAGRHEMYESFAVLLFLGVVASGLASILALRKYVRV*
Ga0137374_105044072	3300012204	Vadose Zone Soil	AEGVVAGLLGTMVAFGLLGGGMYYLGRVRHQVSFLQLLPIAGMHELYESFVVLLFLGVAVSALASILALRKYVRV*
Ga0137387_106111771	3300012349	Vadose Zone Soil	SFLQLLPIAGMHEFYESCVVLLFLGVIASALASLLALRKYVRV*
Ga0137372_108834512	3300012350	Vadose Zone Soil	AGLLGTLVAFGLLGGGMYYLGRVRHQVSFLQLLPIAGMHEFYESCVILLFLGVVASALASLLALRKYVRV*
Ga0137367_104586762	3300012353	Vadose Zone Soil	VAFGLLGGGMYYLGRVRHQVSFLQLLPIAGMHELYESYVVLLFLGVIVSGLASLLALRKYVRV*
Ga0137366_104936912	3300012354	Vadose Zone Soil	VAFGLLGGGMYYLGRVRHQVSFLQLLPIAGMHELYESFVVLLFLGVAVSALASILALRKYVRV*
Ga0137369_102584123	3300012355	Vadose Zone Soil	VRNQVSIFQVLPAVGMREFYSSCIVLLLLGVVASAVASLLALRKYVRI*
Ga0137375_113000802	3300012360	Vadose Zone Soil	FGLLGAGMLYLDRVRHQVSILQLLPIAGRHELYEAFVVLLVLGVVASGLASILALRKYVRV*
Ga0157326_10844302	3300012513	Arabidopsis Rhizosphere	VRDQVSIFQILPAVGMREFYASCIVLLALGVVASALASLLALRKYVRI*
Ga0162650_1000050301	3300012939	Soil	IAFGLLRAGMFYLDRVRNQVSIFQILPAVGMREFYSSCIVLLGLGVVASSLSSLLALRKYVRI*
Ga0182000_100696051	3300014487	Soil	VSIFQILPAVGMREFYASCIVLLALGVVASALASLLALRKYVRI*
Ga0182000_100763653	3300014487	Soil	RSGMFYLDRVRDQVSIFQILPAVGMREFYASCVVLLALGVVASALASLLALRKYVRI*
Ga0182000_101030971	3300014487	Soil	SQVSIFQILPAVGMREFYSSCIVLLALGVTASAVASLLALRKYVRI*
Ga0182001_102656122	3300014488	Soil	PAVGMREFYSSCIVLLGLGVVASALASLLALRKYVRI*
Ga0190266_111795062	3300017965	Soil	AEGVVAGLLGTLIAFGLLRAGMYYLDRVRNQVSIFQILPAVGMREFYASCIVLLALGVVASALASLLALRKYVRI
Ga0184621_100391593	3300018054	Groundwater Sediment	VVAGLLGTLIAFALLRAGMFYLDRVRDQVSIFQILPAVGMREFYASCIVLLALGVVASALASLLALRKYVRI
Ga0184617_10499123	3300018066	Groundwater Sediment	SIFQILPAVGMREFYASCLVLLALGVVASALASLLALRKYVRI
Ga0190269_114911682	3300018465	Soil	GMFYLDRVRDQVSIFQILPAVGMREFYASCIVLLALGVVASALASLLALRKYVRI
Ga0190264_116546692	3300019377	Soil	GLLGTLIAFGLLRAGMFYLDRVRNQVSIFQILPAVGMREFYASCVVLLALGVVASALASLLALRKYVRI
Ga0193705_10945952	3300019869	Soil	GVVAGLLGTLIAFALLRAGMFYLDRVRDQVSIFQILPAVGMREFYASCIVLLALGVVASALASLLALRKYVRI
Ga0193701_10518403	3300019875	Soil	AGLLGTLIAFGLLRSGMFYLDRVRDQVSIFQILPAVGMREFYSSCIVLLALGVVASALASLLALRKYVRI
Ga0193697_10932623	3300020005	Soil	DRVRDQVSIFQILPAVGMREFYASCIVLLALGVVASALASLLALRKYVRI
Ga0222625_16951072	3300022195	Groundwater Sediment	LDRVRNQVSIFQILPAVGMREFYASCFVLLALGVVASALASLLALRKYVRI
Ga0224452_11435201	3300022534	Groundwater Sediment	GVVAGLLGTLVAFGLLRAGMFYLDRVRNQVSIFQILPAVGMREFYSSCIVLLALGVIASAVASLLALRKYVRI
Ga0224452_11741342	3300022534	Groundwater Sediment	PAVGMREFYSSCIVLLALGVVASALASLLALRKYVRI
Ga0222622_101107601	3300022756	Groundwater Sediment	LIAFGLLMTGMFYLDRVRNQVSIFQILPAVGMREFYSSCIVLLALGVVASALASLLALRKYVRI
Ga0207700_116719521	3300025928	Corn, Switchgrass And Miscanthus Rhizosphere	LGGGMYYLGRVRHQVSFLQLLPIAGMHELYESYVVLLFLGVIVSGLASLLALRKYVRV
Ga0207712_102439371	3300025961	Switchgrass Rhizosphere	AEGVVAGLLGTLIAFALLRAGMFYLDRVRDQVSIFQILPAVGMREFYASCIVLLALGVVASALASLLALRKYVRI
Ga0209869_10354212	3300027187	Groundwater Sand	GLLRAGMFYLDRVRNQVSIFQILPAVGMREFYSSCIVLLALGVLASAVASLLALRKYVRI
Ga0209899_10429011	3300027490	Groundwater Sand	EGVVAGLLGTLVAFGLLRAGMFYLDRVRNQVSIFQVLPAVGMREFYSSCIVLLLLGVVASAVASLLALRKYVRI
Ga0209887_10182491	3300027561	Groundwater Sand	IFQVLPAVGMREFYSSCIVLLLLGVVASAVASLLALRKYVRI
Ga0209795_101798692	3300027718	Agave	GVVAGLLGTLIAFGLLRSGMFYLDRVRDQVSIFQILPAVGMREFYASCLVLLVLGVVASALASLLALRKYVRI
Ga0247828_105755041	3300028587	Soil	GLLGTLIAFALLRAGMFYLDRVRDQVSIFQILPAVGMREFYASCIVLLALGVVASALASLLALRKYVRI
Ga0307322_100172903	3300028710	Soil	VGMREFYSSCIVLLALGVVASALASLLALRKYVRI
Ga0307293_100235291	3300028711	Soil	RLPFLAEGVVAGLLGTLIAFGLLRSGMFYLDRVRDQVSIFQILPAVGMREFYSSCIVLLALGVVASALASLLALRKYVRI
Ga0307298_101179433	3300028717	Soil	DQVSIFQILPAVGMREFYSSCIVLLALGVVASALASLLALRKYVRI
Ga0307301_101646532	3300028719	Soil	LGTLIAFGLLRAGMFYLDRVRNQVSIFQILPAVGMREFYASCVVLLALGVVASALASLLALRKYVRI
Ga0307317_100573421	3300028720	Soil	MFYLDRVRDQVSIFQILPAVGMREFYASCLVLLALGVVASALASLLALRKYVRI
Ga0307315_100796481	3300028721	Soil	AGMFYLDRVRDQVSIFQILPAVGMREFYASCIVLLALGVVASALASLLALRKYVRI
Ga0307315_101890492	3300028721	Soil	QVSIFQILPAVGMREFYSSCIVLLALGVVASALASLLALRKYVRI
Ga0307316_100262884	3300028755	Soil	RSGMFYLDRVRDQVSIFQILPAVGMREFYSSCIVLLALGVVASALASLLALRKYVRI
Ga0307320_102238272	3300028771	Soil	GVVAGLLGTLIAFGLLRAGMFYLDRVRNQVSIFQILPAVGMREFYASCVVLLALGVVASALASLLALRKYVRI
Ga0307287_100871341	3300028796	Soil	FYLDRVRNQVSIFQILPAVGMREFYASCIVLLALGVVASALASLLALRKYVRI
Ga0307305_100443941	3300028807	Soil	LLGTLIAFGLLRSGMFYLDRVRSQVSIFQILPAVGMREFYASCAVLLALGVVASALASLLALRKYVRI
Ga0307294_103170222	3300028810	Soil	LLGTLIAFALLRAGMFYLDRVRDQVSIFQILPAVGMREFYASCIVLLALGVVASALASLLALRKYVRI
Ga0307289_102702021	3300028875	Soil	FALLRAGMFYLDRVRDQVSIFQILPAVGMREFYASCIVLLALGVVASALASLLALRKYVR
Ga0307289_104484972	3300028875	Soil	EGVVAGLLGTLIAFGLLRAGMVYLDRVRNQVSIFQILPAVGMREFYASCFVLLALGVVASALASLLALRKYVRI
Ga0307286_100323111	3300028876	Soil	IAFGLLRAGMFYLDRVRNQVSIFQILPAVGMREFYASCVVLLALGVVASALASLLALRKYVRI
Ga0307286_104041751	3300028876	Soil	MFYLDRVRNQVSIFQILPAVGMREFYASCIVLLALGVVASALASLLALRKYVRI
Ga0307278_104360792	3300028878	Soil	RVRAQVSIFQILPAVGMREFYASCIVLLALGVVASALASLLALRKYVRI
Ga0307300_101990121	3300028880	Soil	VSIFQILPAVGMREFYASCIVLLALGVVASALASLLALRKYVRI
Ga0307300_102853242	3300028880	Soil	LIAFGLLRAGMFYLDRVRNQVSIFQILPAVGMREFYASCVVLLALGVVASALASLLALRKYVRI
Ga0307277_102294391	3300028881	Soil	GMLYLDRVRDQVSIFQILPAVGMREFYSSCIVLLALGVVASALASLLALRKYVRI
Ga0268255_101492552	3300030516	Agave	FGLLRAGMFYLDRVRSQVSIFQILPAVGMREFYSSCIVLLALGVTASAVASLLALRKYVR
Ga0308204_101371292	3300031092	Soil	GTLIAFALLRAGMFYLDRVRDQVSIFQILPAVGMREFYASCIVLLALGVVASALASLLALRKYVRI
Ga0307408_1001707063	3300031548	Rhizosphere	LLGTLIAFGLLRSGMFYLDRVRDQVSIFQILPAVGMREFYASCLVLLALGVVASALASLLALRKYVRI
Ga0307405_102953213	3300031731	Rhizosphere	QVSIFQILPAVGMGEFYSSCIVLLALGVTASALASLLALRKYVRI
Ga0307405_110025791	3300031731	Rhizosphere	LLGTLIAFGLLRSGMFYLDRVRDQVSIFQILPAVGMREFYSSCIVLLALGVVASALASLLALRKYVRI
Ga0307413_104002673	3300031824	Rhizosphere	GLLRSGMFYLDRVRNQVSIFQILPAVGMREFYSSCIVLLGLGVVASALASLLALRKYVRI
Ga0307410_101055201	3300031852	Rhizosphere	LGTLIAFGLLRSGMFYLDRLRDQVSIFQILPAVGMREFYSSCIVLLALGVVASALASLLALRKYVRI
Ga0307410_109870811	3300031852	Rhizosphere	VVAGLLGTMIAFGLLRSGMFYLDRVRNQVSIFQILPAVGMREFYSSCIVLLGLGVVASALASLLALRKYVRI
Ga0307406_103335461	3300031901	Rhizosphere	WVRSQVSIFQILPAVGMREFYSSCIVLLALGVTASALASLLALRKYVRI
Ga0307407_100200641	3300031903	Rhizosphere	YLDRVRDQVSIFQILPAVGMREFYSSCIVLLALGVVASALASLLALRKYVRI
Ga0307412_101014391	3300031911	Rhizosphere	LPFLAEGVVAGLLGTMIAFGLLRTGMFYLDRVRSQVSIFQILPAVGMREFYASCIVLLALGVVASALASLLALRKYVRI
Ga0307409_1001908813	3300031995	Rhizosphere	EGVVAGLLGTLIAFALLRSGMFYLDRVRDQVSIFQILPAVGMREFYSSCVVLLALGVVASALASLLALRKYVRI
Ga0307409_1026825872	3300031995	Rhizosphere	RDQVSIFQILPAVGMREFYASCIVLLALGVVASALASLLALRKYVRI
Ga0307416_10000472712	3300032002	Rhizosphere	GLLRAGMFYLDRVRDQVSIFQILPAVGMREFYASCVVLLALGVVASALASLLALRKYVRI
Ga0307416_1001613511	3300032002	Rhizosphere	GTLIAFGLLRSGMFYLDRLRDQVSIFQILPAVGMREFYSSCIVLLALGVVASALASLLALRKYVRI
Ga0307416_1003241531	3300032002	Rhizosphere	VVAGLLGTLIAFGLLRAGMLYLDRVRDQVSIFQILPAVGMREFYASCAVLLALGVVASALASLLALRKYVRI
Ga0307416_1034416422	3300032002	Rhizosphere	LRSGMFYLDRVRDQVSIFQILPAVGMREFYSSCVVLLALGVVASALASLLALRKYVRI
Ga0307414_108062691	3300032004	Rhizosphere	EGVVAGLLGTLIAFGLLRAGMFYLDRVRDQVSIFQILPAVGMREFYASCAVLLALGVVASALASLLALRKYVRI
Ga0307414_110114843	3300032004	Rhizosphere	VGMREFYASCVVLLALGVVASALASLLALRKYVRI
Ga0307414_115686422	3300032004	Rhizosphere	IAFGLLRSGMFYLDRVRDQVSIFQILPAVGMREFYASCLVLLVLGVVASALASLLALRKYVRI
Ga0307411_117544152	3300032005	Rhizosphere	LLGTLIAFGLLRAGMFYLDRVRDQVSIFQILPAVGMREFYASCVVLLALGVVASALASLLALRKYVRI
Ga0307411_117666162	3300032005	Rhizosphere	SIFQILPAVGMREFYSSCVVLLALGVVASALASLLALRKYVRI
Ga0326721_100395651	3300032080	Soil	VRGQVSIFQILPAVGMREFYASCIVLLALGVVASALASLLALRKYVRI
Ga0326721_107908502	3300032080	Soil	LLGTVIAFGLLRSGMFYLDRVRDQVSIFQILPAVGMREFYASCLVLLVLGVVASALASLLALRKYVRI
Ga0307415_1006763213	3300032126	Rhizosphere	GLLGTLIAFALLRSGMFYLDRVRDQVSIFQILPAVGMREFYSSCVVLLALGVVASALASLLALRKYVRI
Ga0268251_101530863	3300032159	Agave	LLRAGMFYLDRVRDQVSIFQILPAVGMREFYSSCVILLALGVVASALASLLALRKYVRI
Ga0268251_105007461	3300032159	Agave	RVRHQVSFLQLLPIAGMHEFYESCVVLLGLGVVASALASLLALRKYVRV
Ga0364933_126345_3_161	3300034150	Sediment	YLDRVRNQVSIFQILPAVGMREFYASCVVLLALGVVASALASLLALRKYVRI
Ga0334913_019591_1308_1517	3300034172	Sub-Biocrust Soil	GLLGTLVAFGLLRAGMFYLDRVRSQVSIFQILPAVGMREFYSSCIVLLALGVTASAVASLLALRKYVRI
Ga0334913_142602_6_224	3300034172	Sub-Biocrust Soil	VVAGLLGTLIAFGLLRAGMFYLDRVRNQVSIFQILPAVGMREFYSSCVVLLALGVIASALASLLALRKYVRI
Ga0334931_188214_1_207	3300034377	Sub-Biocrust Soil	LLGTLIAFGLLRAGMFYLDRVRNQVSIFQILPAVGMREFYASCIVLLALGVVASALASLLALRKYVRI

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F073206

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences