Metagenome / Metatranscriptome Family F073164

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F073164
Family Type	Metagenome / Metatranscriptome
Number of Sequences	120
Average Sequence Length	60 residues
Representative Sequence	MTASAGVAAAADEGLATAVRGDNAGAQAAIVIVSREPGVREILHRELSKRYGADYQI
Number of Associated Samples	93
Number of Associated Scaffolds	120

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	100.00 %
% of genes near scaffold ends (potentially truncated)	97.50 %
% of genes from short scaffolds (< 2000 bps)	93.33 %
Associated GOLD sequencing projects	92
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.47

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (57.500 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (43.333 % of family members)
Environment Ontology (ENVO)	Unclassified (49.167 % of family members)
Earth Microbiome Project Ontology (EMPO)	Unclassified (48.333 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 40.00% β-sheet: 4.71% Coil/Unstructured: 55.29%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.47
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.47
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 120 Family Scaffolds
PF04193	PQ-loop	45.83
PF08241	Methyltransf_11	5.00
PF13560	HTH_31	5.00
PF00440	TetR_N	5.00
PF01381	HTH_3	2.50
PF00196	GerE	2.50
PF00561	Abhydrolase_1	1.67
PF01565	FAD_binding_4	1.67
PF00106	adh_short	0.83
PF01638	HxlR	0.83
PF00583	Acetyltransf_1	0.83
PF13649	Methyltransf_25	0.83
PF00144	Beta-lactamase	0.83

COG ID	Name	Functional Category	% Frequency in 120 Family Scaffolds
COG1680	CubicO group peptidase, beta-lactamase class C family	Defense mechanisms [V]	0.83
COG1686	D-alanyl-D-alanine carboxypeptidase	Cell wall/membrane/envelope biogenesis [M]	0.83
COG1733	DNA-binding transcriptional regulator, HxlR family	Transcription [K]	0.83
COG2367	Beta-lactamase class A	Defense mechanisms [V]	0.83

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	57.50 %
Unclassified	root	N/A	42.50 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	57.50 %
Unclassified	root	N/A	42.50 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	57.50 %
Unclassified	root	N/A	42.50 %

Name	Rank	Taxonomy	Distribution
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	50.83 %
Unclassified	root	N/A	42.50 %

Name	Rank	Taxonomy	Distribution
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	49.17 %
Unclassified	root	N/A	42.50 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	42.50 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	40.00 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	42.50 %
Micromonosporales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales	9.17 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	3.33 %
Frankiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales	3.33 %
Streptomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales	1.67 %
Micrococcales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales	0.83 %
Geodermatophilales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	42.50 %
Micromonosporaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae	9.17 %
Frankiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae	3.33 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	3.33 %
Streptomycetaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae	1.67 %
Intrasporangiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Intrasporangiaceae	0.83 %
Geodermatophilaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	42.50 %
unclassified Micromonosporaceae	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → unclassified Micromonosporaceae	8.33 %
Frankia	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae → Frankia	3.33 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	3.33 %
Streptomyces	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	1.67 %
Geodermatophilus	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae → Geodermatophilus	0.83 %
Micromonospora	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Micromonospora	0.83 %
Phycicoccus	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Intrasporangiaceae → Phycicoccus	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	42.50 %
Micromonosporaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → unclassified Micromonosporaceae → Micromonosporaceae bacterium	8.33 %
Frankia soli	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae → Frankia → Frankia soli	3.33 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	3.33 %
unclassified Phycicoccus	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Intrasporangiaceae → Phycicoccus → unclassified Phycicoccus	0.83 %
unclassified Streptomyces	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → unclassified Streptomyces	0.83 %
Geodermatophilus chilensis	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae → Geodermatophilus → Geodermatophilus chilensis	0.83 %
Micromonospora	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Micromonospora	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	42.50 %
Micromonosporaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → unclassified Micromonosporaceae → Micromonosporaceae bacterium	8.33 %
Frankia soli	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae → Frankia → Frankia soli	3.33 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	3.33 %
Phycicoccus sp.	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Intrasporangiaceae → Phycicoccus → unclassified Phycicoccus → Phycicoccus sp.	0.83 %
Streptomyces sp. ET3-23	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → unclassified Streptomyces → Streptomyces sp. ET3-23	0.83 %
Geodermatophilus chilensis	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae → Geodermatophilus → Geodermatophilus chilensis	0.83 %
Micromonospora	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Micromonospora	0.83 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000956\|JGI10216J12902_118604854	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → unclassified Micromonosporaceae → Micromonosporaceae bacterium	749	Open in IMG/M
3300004479\|Ga0062595_101610972	All Organisms → cellular organisms → Bacteria → Terrabacteria group	606	Open in IMG/M
3300004479\|Ga0062595_101625086	Not Available	604	Open in IMG/M
3300005332\|Ga0066388_103341735	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	820	Open in IMG/M
3300005332\|Ga0066388_105106117	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	667	Open in IMG/M
3300005332\|Ga0066388_105705169	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	630	Open in IMG/M
3300005364\|Ga0070673_100159524	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1917	Open in IMG/M
3300005434\|Ga0070709_10220492	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → unclassified Micromonosporaceae → Micromonosporaceae bacterium	1352	Open in IMG/M
3300005439\|Ga0070711_100858823	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	772	Open in IMG/M
3300005456\|Ga0070678_100112635	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	2131	Open in IMG/M
3300005468\|Ga0070707_100294228	All Organisms → cellular organisms → Bacteria	1578	Open in IMG/M
3300005518\|Ga0070699_100482053	All Organisms → cellular organisms → Bacteria	1126	Open in IMG/M
3300005764\|Ga0066903_100978140	All Organisms → cellular organisms → Bacteria	1543	Open in IMG/M
3300006046\|Ga0066652_100353314	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	1324	Open in IMG/M
3300006059\|Ga0075017_100383950	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1051	Open in IMG/M
3300006102\|Ga0075015_100937430	Not Available	527	Open in IMG/M
3300006904\|Ga0075424_102378421	Not Available	556	Open in IMG/M
3300006934\|Ga0080680_1239293	All Organisms → cellular organisms → Bacteria	562	Open in IMG/M
3300006954\|Ga0079219_10071155	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1592	Open in IMG/M
3300009683\|Ga0116224_10427909	Not Available	630	Open in IMG/M
3300009824\|Ga0116219_10130531	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1459	Open in IMG/M
3300010043\|Ga0126380_11305369	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	632	Open in IMG/M
3300010043\|Ga0126380_11734569	Not Available	562	Open in IMG/M
3300010335\|Ga0134063_10344187	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → unclassified Micromonosporaceae → Micromonosporaceae bacterium	723	Open in IMG/M
3300010359\|Ga0126376_11835963	All Organisms → cellular organisms → Bacteria	645	Open in IMG/M
3300010360\|Ga0126372_10430406	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Micromonospora	1215	Open in IMG/M
3300010361\|Ga0126378_11445434	Not Available	779	Open in IMG/M
3300010366\|Ga0126379_11471696	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae → Geodermatophilus → Geodermatophilus chilensis	787	Open in IMG/M
3300010376\|Ga0126381_100361161	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2011	Open in IMG/M
3300010376\|Ga0126381_100713478	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1435	Open in IMG/M
3300010376\|Ga0126381_100995411	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1209	Open in IMG/M
3300010376\|Ga0126381_102192202	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	795	Open in IMG/M
3300010396\|Ga0134126_10968193	Not Available	954	Open in IMG/M
3300010398\|Ga0126383_12388593	Not Available	614	Open in IMG/M
3300010403\|Ga0134123_12125081	Not Available	622	Open in IMG/M
3300012971\|Ga0126369_12417884	Not Available	611	Open in IMG/M
3300012984\|Ga0164309_11585815	Not Available	561	Open in IMG/M
3300016341\|Ga0182035_12121361	Not Available	510	Open in IMG/M
3300016357\|Ga0182032_10297450	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1273	Open in IMG/M
3300016404\|Ga0182037_10594498	Not Available	938	Open in IMG/M
3300016404\|Ga0182037_11625878	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	575	Open in IMG/M
3300017821\|Ga0187812_1300177	Not Available	511	Open in IMG/M
3300017943\|Ga0187819_10277889	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	976	Open in IMG/M
3300020582\|Ga0210395_11290187	Not Available	535	Open in IMG/M
3300021171\|Ga0210405_11275468	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → unclassified Micromonosporaceae → Micromonosporaceae bacterium	541	Open in IMG/M
3300021420\|Ga0210394_10527726	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → unclassified Micromonosporaceae → Micromonosporaceae bacterium	1039	Open in IMG/M
3300021474\|Ga0210390_10434590	Not Available	1108	Open in IMG/M
3300025898\|Ga0207692_10389078	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → unclassified Micromonosporaceae → Micromonosporaceae bacterium	867	Open in IMG/M
3300025910\|Ga0207684_11667637	Not Available	514	Open in IMG/M
3300025915\|Ga0207693_10328476	Not Available	1197	Open in IMG/M
3300026095\|Ga0207676_10095117	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2456	Open in IMG/M
3300027787\|Ga0209074_10485675	Not Available	533	Open in IMG/M
3300027884\|Ga0209275_10668903	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Intrasporangiaceae → Phycicoccus → unclassified Phycicoccus → Phycicoccus sp.	597	Open in IMG/M
3300027895\|Ga0209624_10312436	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1047	Open in IMG/M
3300031544\|Ga0318534_10313397	Not Available	904	Open in IMG/M
3300031561\|Ga0318528_10086766	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1629	Open in IMG/M
3300031640\|Ga0318555_10556784	Not Available	621	Open in IMG/M
3300031681\|Ga0318572_10723213	Not Available	593	Open in IMG/M
3300031713\|Ga0318496_10042763	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2329	Open in IMG/M
3300031713\|Ga0318496_10111533	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1474	Open in IMG/M
3300031723\|Ga0318493_10595785	Not Available	616	Open in IMG/M
3300031744\|Ga0306918_11250252	Not Available	572	Open in IMG/M
3300031747\|Ga0318502_10055613	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2095	Open in IMG/M
3300031747\|Ga0318502_10260623	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1014	Open in IMG/M
3300031747\|Ga0318502_11029679	Not Available	502	Open in IMG/M
3300031748\|Ga0318492_10471834	Not Available	664	Open in IMG/M
3300031748\|Ga0318492_10567621	Not Available	604	Open in IMG/M
3300031751\|Ga0318494_10344155	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	862	Open in IMG/M
3300031751\|Ga0318494_10611189	Not Available	637	Open in IMG/M
3300031751\|Ga0318494_10675609	All Organisms → cellular organisms → Bacteria	604	Open in IMG/M
3300031753\|Ga0307477_11045957	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	534	Open in IMG/M
3300031768\|Ga0318509_10808908	Not Available	518	Open in IMG/M
3300031769\|Ga0318526_10037456	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae → Frankia → Frankia soli	1802	Open in IMG/M
3300031778\|Ga0318498_10485590	Not Available	545	Open in IMG/M
3300031797\|Ga0318550_10007355	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	4062	Open in IMG/M
3300031797\|Ga0318550_10154284	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1104	Open in IMG/M
3300031805\|Ga0318497_10199388	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1105	Open in IMG/M
3300031805\|Ga0318497_10250003	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	983	Open in IMG/M
3300031805\|Ga0318497_10257350	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → unclassified Streptomyces → Streptomyces sp. ET3-23	969	Open in IMG/M
3300031819\|Ga0318568_10823173	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → unclassified Micromonosporaceae → Micromonosporaceae bacterium	576	Open in IMG/M
3300031835\|Ga0318517_10082094	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1396	Open in IMG/M
3300031846\|Ga0318512_10289171	Not Available	813	Open in IMG/M
3300031859\|Ga0318527_10465802	Not Available	539	Open in IMG/M
3300031890\|Ga0306925_11713221	Not Available	606	Open in IMG/M
3300031894\|Ga0318522_10278001	Not Available	635	Open in IMG/M
3300031897\|Ga0318520_11060122	Not Available	513	Open in IMG/M
3300031912\|Ga0306921_11858333	Not Available	646	Open in IMG/M
3300031942\|Ga0310916_10173117	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1794	Open in IMG/M
3300031942\|Ga0310916_10605760	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae → Frankia → Frankia soli	931	Open in IMG/M
3300031946\|Ga0310910_10647732	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	837	Open in IMG/M
3300031954\|Ga0306926_10493071	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae → Frankia → Frankia soli	1506	Open in IMG/M
3300031954\|Ga0306926_10514959	All Organisms → cellular organisms → Bacteria	1469	Open in IMG/M
3300031954\|Ga0306926_11787421	Not Available	698	Open in IMG/M
3300031959\|Ga0318530_10213455	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	793	Open in IMG/M
3300031981\|Ga0318531_10549874	Not Available	523	Open in IMG/M
3300032008\|Ga0318562_10490914	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → unclassified Micromonosporaceae → Micromonosporaceae bacterium	712	Open in IMG/M
3300032009\|Ga0318563_10609772	Not Available	588	Open in IMG/M
3300032009\|Ga0318563_10719519	Not Available	536	Open in IMG/M
3300032010\|Ga0318569_10130104	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1150	Open in IMG/M
3300032025\|Ga0318507_10220844	Not Available	820	Open in IMG/M
3300032043\|Ga0318556_10094120	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1510	Open in IMG/M
3300032043\|Ga0318556_10373959	Not Available	745	Open in IMG/M
3300032064\|Ga0318510_10229174	Not Available	758	Open in IMG/M
3300032064\|Ga0318510_10292573	Not Available	677	Open in IMG/M
3300032066\|Ga0318514_10055322	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1929	Open in IMG/M
3300032066\|Ga0318514_10232096	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	970	Open in IMG/M
3300032067\|Ga0318524_10649793	Not Available	556	Open in IMG/M
3300032094\|Ga0318540_10222408	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	911	Open in IMG/M
3300032261\|Ga0306920_101533501	Not Available	950	Open in IMG/M
3300032783\|Ga0335079_10686495	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → unclassified Micromonosporaceae → Micromonosporaceae bacterium	1071	Open in IMG/M
3300032829\|Ga0335070_11181094	Not Available	702	Open in IMG/M
3300032892\|Ga0335081_10428872	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1690	Open in IMG/M
3300032892\|Ga0335081_10694538	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae → Frankia → Frankia soli	1235	Open in IMG/M
3300032892\|Ga0335081_10926034	All Organisms → cellular organisms → Bacteria	1024	Open in IMG/M
3300032892\|Ga0335081_11643132	Not Available	703	Open in IMG/M
3300032896\|Ga0335075_11173448	Not Available	669	Open in IMG/M
3300032954\|Ga0335083_10443000	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → unclassified Micromonosporaceae → Micromonosporaceae bacterium	1099	Open in IMG/M
3300032955\|Ga0335076_10034124	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	5102	Open in IMG/M
3300033290\|Ga0318519_10898502	Not Available	547	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	96.67%
Host-Associated	Host-Associated	3.33%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	93.33%
Aquatic	Environmental → Aquatic	3.33%
Plants	Host-Associated → Plants	3.33%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	93.33%
Freshwater	Environmental → Aquatic → Freshwater	1.67%
Sediment	Environmental → Aquatic → Sediment	1.67%
Rhizoplane	Host-Associated → Plants → Rhizoplane	1.67%
Rhizosphere	Host-Associated → Plants → Rhizosphere	1.67%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	74.17%
Loam	Environmental → Terrestrial → Soil → Loam	11.67%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	7.50%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	1.67%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	1.67%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	0.83%
Soil	Host-Associated → Plants → Rhizoplane → Soil	0.83%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	0.83%
Soil	Host-Associated → Plants → Rhizosphere → Soil	0.83%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	53.33%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	15.00%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	7.50%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	5.83%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	5.83%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	3.33%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	1.67%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	1.67%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	1.67%
Tropical Rainforest	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest	0.83%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	0.83%
Unclassified	Host-Associated → Plants → Rhizoplane → Soil → Unclassified	0.83%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	0.83%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	0.83%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	43.33%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	10.00%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	9.17%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	7.50%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	5.83%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	3.33%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	1.67%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	1.67%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	1.67%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	1.67%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	1.67%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	1.67%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	1.67%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	1.67%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.83%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	0.83%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.83%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	0.83%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.83%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere	0.83%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	0.83%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	0.83%
Tropical Rainforest Soil	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest → Tropical Rainforest Soil	0.83%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300001867	Texas A ecozone_OM1H0_M2 (Combined assembly for Texas A ecozone Site metagenome samples, ASSEMBLY_DATE=20130705)	Environmental	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005364	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG	Host-Associated	Open in IMG/M
3300005434	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG	Environmental	Open in IMG/M
3300005439	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG	Environmental	Open in IMG/M
3300005456	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG	Host-Associated	Open in IMG/M
3300005468	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG	Environmental	Open in IMG/M
3300005518	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006046	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_101	Environmental	Open in IMG/M
3300006059	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2012	Environmental	Open in IMG/M
3300006102	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2013	Environmental	Open in IMG/M
3300006904	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3	Host-Associated	Open in IMG/M
3300006934	Tropical rainforest soil microbial communities from the Amazon Forest, Brazil, analyzing deforestation - Metatranscriptome F II A1 (Metagenome Metatranscriptome) (version 2)	Environmental	Open in IMG/M
3300006954	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control	Environmental	Open in IMG/M
3300009683	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_b_LC metaG	Environmental	Open in IMG/M
3300009824	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_6_BS metaG	Environmental	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010335	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_09082015	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010396	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-2	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300010403	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-3	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300012984	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_247_MG	Environmental	Open in IMG/M
3300016341	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170	Environmental	Open in IMG/M
3300016357	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000	Environmental	Open in IMG/M
3300016404	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082	Environmental	Open in IMG/M
3300017821	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW-S_2	Environmental	Open in IMG/M
3300017943	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_4	Environmental	Open in IMG/M
3300020582	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-O	Environmental	Open in IMG/M
3300021171	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-M	Environmental	Open in IMG/M
3300021420	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M	Environmental	Open in IMG/M
3300021474	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-O	Environmental	Open in IMG/M
3300025898	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025910	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025915	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300026095	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes)	Host-Associated	Open in IMG/M
3300027787	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter (SPAdes)	Environmental	Open in IMG/M
3300027884	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2 (SPAdes)	Environmental	Open in IMG/M
3300027895	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_O1 (SPAdes)	Environmental	Open in IMG/M
3300031544	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f26	Environmental	Open in IMG/M
3300031561	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f26	Environmental	Open in IMG/M
3300031640	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f23	Environmental	Open in IMG/M
3300031681	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f20	Environmental	Open in IMG/M
3300031713	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f22	Environmental	Open in IMG/M
3300031723	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f23	Environmental	Open in IMG/M
3300031744	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)	Environmental	Open in IMG/M
3300031747	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f22	Environmental	Open in IMG/M
3300031748	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f22	Environmental	Open in IMG/M
3300031751	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f24	Environmental	Open in IMG/M
3300031753	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_515	Environmental	Open in IMG/M
3300031768	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f22	Environmental	Open in IMG/M
3300031769	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f24	Environmental	Open in IMG/M
3300031778	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f24	Environmental	Open in IMG/M
3300031797	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f23	Environmental	Open in IMG/M
3300031805	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f23	Environmental	Open in IMG/M
3300031819	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f21	Environmental	Open in IMG/M
3300031835	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f21	Environmental	Open in IMG/M
3300031846	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f19	Environmental	Open in IMG/M
3300031859	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f25	Environmental	Open in IMG/M
3300031890	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)	Environmental	Open in IMG/M
3300031894	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f18	Environmental	Open in IMG/M
3300031897	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f16	Environmental	Open in IMG/M
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental	Open in IMG/M
3300031942	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF176	Environmental	Open in IMG/M
3300031946	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF172	Environmental	Open in IMG/M
3300031954	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)	Environmental	Open in IMG/M
3300031959	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f24	Environmental	Open in IMG/M
3300031981	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f25	Environmental	Open in IMG/M
3300032008	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f18	Environmental	Open in IMG/M
3300032009	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f19	Environmental	Open in IMG/M
3300032010	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f22	Environmental	Open in IMG/M
3300032025	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f20	Environmental	Open in IMG/M
3300032043	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f24	Environmental	Open in IMG/M
3300032064	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f17	Environmental	Open in IMG/M
3300032066	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f18	Environmental	Open in IMG/M
3300032067	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f22	Environmental	Open in IMG/M
3300032094	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f25	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300032783	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.3	Environmental	Open in IMG/M
3300032829	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.3	Environmental	Open in IMG/M
3300032892	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.5	Environmental	Open in IMG/M
3300032896	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.4	Environmental	Open in IMG/M
3300032954	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.2	Environmental	Open in IMG/M
3300032955	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.5	Environmental	Open in IMG/M
3300033290	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f15	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI10216J12902_1186048542	3300000956	Soil	MSASTGVATAAEEGRAEAVPGEIAGAHAAIIIVGRDPGSRHILRRELSKRYGGDYL
JGI12627J18819_103442171	3300001867	Forest Soil	MTASAGIAAAAPEGLAVAVRDETARTRAAIVIVCRDRGARGILHREV
Ga0062595_1016109722	3300004479	Soil	MTASAGATTAADEGLAVLGEPAGPQAAIVIICRDPGARQILRRELSKRYGGDY
Ga0062595_1016250861	3300004479	Soil	MSASAGVATAAYEGPAAAVRDEDAGAQAAIVIVCREPGAREILHRELSRRYGADYQ
Ga0066388_1033417351	3300005332	Tropical Forest Soil	MTASAGAATVAHEELDAAGHGEAAGPQAAIVIVGRNPATREILHREMSKRYGADYQIV
Ga0066388_1051061172	3300005332	Tropical Forest Soil	MTAPAGVAAVAHEELATAAGREAAGPQAAIVIVCRDPGTREILHRELSKRYGA
Ga0066388_1057051692	3300005332	Tropical Forest Soil	MTASAGAATAAPEGLGAVVPGETAGAQAAIVIVSRDPGAREILHRELSKRYRADYQIVVCDR
Ga0070673_1001595241	3300005364	Switchgrass Rhizosphere	MSASAGVATAAYEGPAAAVRGEDPWAQAAIVIVCREPGAREILHRELSRRYGADYQILVCDRPAELAARMRDLRKAGLPV
Ga0070709_102204921	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	MTASGAAAAADERLDAAVRGETAGAQAAIVIVSRDPGAREILRRELSK
Ga0070711_1008588232	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	MSASAGVATAAYEGPTAAVRGEDAGAQAAIVIVCRDPGAREILHRELSRRYGADYQILVCDR
Ga0070678_1001126351	3300005456	Miscanthus Rhizosphere	MSASAGVATAAYEGPAAAVRGEDPGVQAAIVIVCREPGAQEILHRELSRRYGADYQILVCDRT
Ga0070707_1002942281	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	MTTSAGTAAAVYEELAAAGIGETAGVQAAIVIVCREPGVRQILHRELSKRYGAD
Ga0070699_1004820531	3300005518	Corn, Switchgrass And Miscanthus Rhizosphere	MSASAGVATPAYEGPAAAARGEDAEAQAAIVIVCREPGAREILHRELSRRYGADYHILVCDRPTELAARMRDLQKAGLP
Ga0066903_1009781404	3300005764	Tropical Forest Soil	MTASVAVAAAAHEELGAVVRGETAGAPAAIVIVSRDPGAREILHQELAKRYG
Ga0066652_1003533141	3300006046	Soil	MTAPAGVAAAASEELAGDVRGETAGAQAAIVIVCRDPGPREILRRELSKRYSGG*
Ga0075017_1003839504	3300006059	Watersheds	VHRSSSDASEGDDMTASAGVAAAACEGLAGDVRGETAGAQAAIVVVSREPGTREILSRELSKRYG
Ga0075015_1009374302	3300006102	Watersheds	MTASASVAAAEYEGLAAAVRGDNAGAQAAIVIVSRDPGAREILHRELSKRYGADYQILACGR
Ga0075424_1023784211	3300006904	Populus Rhizosphere	MTASAGLATAGYDELGAAVAGDTAGAQVAIVIVSRDFGTREILYRELSKRYGGDYQ
Ga0080680_12392932	3300006934	Tropical Rainforest Soil	MTASAGAATGAHQELGTAVLGETAGAQAAIVIVGREPRARKIIYRELLKRYGADYQVVACDRPAELAPW
Ga0079219_100711553	3300006954	Agricultural Soil	MGASAGVATAAYEGPAAAVRGEDAGAQATIVVVCREPGARETLYRELSRRYGVDYQILVCDRPAE
Ga0116224_104279092	3300009683	Peatlands Soil	MTASASVAAAAYEGLATAVRGDNGGPQAAIVIVSREPGAREILHRELSKRYGADYQI
Ga0116219_101305311	3300009824	Peatlands Soil	MTASTGVAAAADEGLAAAGRYENGGAQAAIVIVCLEPGAREILHVELSKRYGADYQILACGRPAELAA
Ga0126380_113053691	3300010043	Tropical Forest Soil	MTASAGAATAAHQESGTAMRREETAGTRAVIVIVSREAGAREIMYREVSKRYGADYQIVV
Ga0126380_117345691	3300010043	Tropical Forest Soil	MTASAGAATHAHQELGTAWRGETAGAQASIVIVFREPGAREIIHRELSKRYGTDYQ
Ga0134063_103441873	3300010335	Grasslands Soil	MSASAGVAAHERLAAAVRGETARAQAAIVIVSRDPGAREVLHRELSKRYGADY
Ga0126376_118359632	3300010359	Tropical Forest Soil	MTASAGAATGAHQELGTAVLGETAGAQAAIVIVGREPRARKIIYRELLKRYGAASPASTVPS*
Ga0126372_104304061	3300010360	Tropical Forest Soil	MTASAAVTTAADEEPTAAIGGETAGPQAAIVIAGREPGAREILHREMSKRYGADYQIVVCDRSEELAPWM
Ga0126378_114454342	3300010361	Tropical Forest Soil	MSASAGVAAATYKGPTAAVRGDDPGAQAAIVIVCREPEAREILHRELSKRYGADYRILACDRPAE
Ga0126379_114716962	3300010366	Tropical Forest Soil	MTASAGAATVAHEELDAAGHGEAAGPQAAIVIVGRNPATREILHREMS
Ga0126381_1003611611	3300010376	Tropical Forest Soil	MSTSAGAATAAPEDLGAVVRGGSEGAQAAIVIVSRDPGAREILHRELSKRY
Ga0126381_1007134784	3300010376	Tropical Forest Soil	MTASAGAAAAAPEELGAAVSGDTGEDQAAIVVVSRDPGAREILSRELTKRYGADYQIVAC
Ga0126381_1009954112	3300010376	Tropical Forest Soil	MTASAGVAAATGERLAPAVHGETAEAQAAIVIVSRDTATREILSRELSKRYGGD
Ga0126381_1021922021	3300010376	Tropical Forest Soil	MTASAGAATGAHQELGTAVLGESAGAQAAIVIVGREPRARKIIYRELLK
Ga0134126_109681932	3300010396	Terrestrial Soil	MSASAGVATAAYEGPAAAVRGEDPWAQAAIVIVCREPGAREILHRELSRRYGADYQILVC
Ga0126383_123885931	3300010398	Tropical Forest Soil	MTASAGVATVTDEGQDAAARGELAEAQAAIVIVGRDPTGREILYQEVSKRYGGDYQIVVCGQSAELASWMRDL
Ga0134123_121250811	3300010403	Terrestrial Soil	MSASAGVATAAYEGPAAAVRGEDPWAQAAIVIVCREPGAREILHRELSRRYGADYQILV
Ga0126369_124178842	3300012971	Tropical Forest Soil	MGDDMTVSAGITAVADEEPAAAVRGEPGPAQAAIVVVCRDRGAREILHRELAKRYGADYQ
Ga0164309_115858151	3300012984	Soil	MTASAGVTTATDEGLAAAVRSEPAGARAAIAIVGRDRGAREILHRELSKRYGADYQIIACDRPAELAPWMRD
Ga0182035_121213612	3300016341	Soil	MTASAGAGTAAYEGLATAVRGETAGAQAAIVIVCREPGAREILYRELSK
Ga0182032_102974503	3300016357	Soil	MTTSAGVAAAAYDGSAVTVRGEDAGARAAIVIVCREPAAREILHRELSKRYG
Ga0182037_105944981	3300016404	Soil	MTTSAGVAAAAYDGPAATVRGEDAGARAAIVIVCREPAAREILHRELSKRYGADYQILACGRPAELAAWMRDLRAAG
Ga0182037_116258782	3300016404	Soil	MSASAGAATAADERTVRGEMAGAQAAILIVSHESGTREILYRELSKRYGADYQIMACEQPAELAAWM
Ga0187812_13001771	3300017821	Freshwater Sediment	MTASAGVAAAADEGLATAVRGDNAGAQAAIVIVSREPGVREILHRELSKRYGADYQI
Ga0187819_102778891	3300017943	Freshwater Sediment	MTASAGVAAAADEGLATAVRGDNAGAQAAIVIVSREPGAREILHRELAKRYGA
Ga0210395_112901872	3300020582	Soil	MTASGATAAADEGLVTAVRGETAGAQAAIVIVSREPAARETLRRELSKRYGADYQILACS
Ga0210405_112754682	3300021171	Soil	MSASAGFATAAYDGPAAAVRGEDAGAQAAIVIVCREPGTREILHRELSRRYGADYQILV
Ga0210394_105277263	3300021420	Soil	MTASGTAAAADEGLAAVRGETAGAQAAIVIVSREPGAREILRRELSKRYGADYQILTC
Ga0210390_104345901	3300021474	Soil	MTTSAGLATARSEDLAAAGARAAIVVVCREPGAREILGRELSKRYGADYQIVVCDRPAELETRMR
Ga0207692_103890781	3300025898	Corn, Switchgrass And Miscanthus Rhizosphere	MTASGAAAAADEGLDAAVRDETAGAQAAIVIVSRDPGAREILRRELSKRYGADYQILACSRPAE
Ga0207684_116676371	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	MSASAGVATAAYEGPAAAVRGEDPWAQAAIVIVCREPGAREILHRELSRRYGADYQILVCDRPAELAARMRD
Ga0207693_103284763	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	MSASAGVATAAYEGPAAAVRGEDPGVQAAIVIVCREPGAQEILHRELSRRYGADYQILVCDRTAGLAARMRDLRKAGL
Ga0207676_100951171	3300026095	Switchgrass Rhizosphere	MSASAGVATAAYEGPAAAVRGEDPWAQAAIVIVCREPGAREILHRELSRRYGADYQILVCDR
Ga0209074_104856752	3300027787	Agricultural Soil	MSTSTDVAVAAHQDEAAAEPGQIAGAQTAIVIVSRDPGAREILHRELSKRY
Ga0209275_106689031	3300027884	Soil	VSTSAGVAAAAHQELAAAEPGEFAAQAAIVIVSRDPGAREILHRELSKRYGADY
Ga0209624_103124363	3300027895	Forest Soil	MTASADVAAALDEELTAAVRGETAEAQAAIVIVCREPGAREILSRELSKRYGADYQIVVYDRPA
Ga0318534_103133972	3300031544	Soil	MSTSAGVATAADEGTAAVQGDIAGAQAAILIVSHDPGTREILHRELSKRYGADYQIMACH
Ga0318528_100867661	3300031561	Soil	MTASAGAATDALEELGAAAPGENAGTQAAIVIVSRDPGAREILHRELSKRYGADYQ
Ga0318555_105567841	3300031640	Soil	MSTSAGGAAADERPAAVVRSEAAVAQAAIIFVSRELSAREVLHRELSKRYGADYQVLACGRPTELPPLMRDL
Ga0318572_107232131	3300031681	Soil	MTASAGVAAAADEGVADASGGETARPQAAIVIVGRDRGAGKIVHRELSKRYGADYQIVVC
Ga0318496_100427631	3300031713	Soil	MTASGGVAATAYEGPAAGVRGATTGARAAIVIVGRHPGAREILHREMSKRYGADYQLVVCSR
Ga0318496_101115331	3300031713	Soil	MTTSAGVAAAAYDGPAATVRGEDAGARAAIVIVCREPAAREILHRELSKRYGADYQILA
Ga0318493_105957851	3300031723	Soil	MSTSAGGAAADERPAAVVRSEAAVAQAAIIFVSRELSAREVLHRELSKRYGADYQVLACG
Ga0306918_112502521	3300031744	Soil	MTASAGAATDALEELGAAAPGENAGTQAAIVIVSRDPGAREILYRELSKRYGADYQIV
Ga0318502_100556131	3300031747	Soil	MTASAGVAAAAHQELGAAVRGETGRAQAAIVIVGHDPGVREILYRELSKRYGADYQ
Ga0318502_102606232	3300031747	Soil	MTTSAGVAAAAYDGSAVTVRGEDAGARAAIVIVCREPAAREILDRELSKRYGADYQILACGRPAELAAW
Ga0318502_110296791	3300031747	Soil	MTTSAGVAAAAYDGPAATVRGEDAGARAAIVIVCREPAAREILHRELSKRYGADYQILACGRPAELAAWMRDLRA
Ga0318492_104718341	3300031748	Soil	MTASAGAATDATEELGTAVPGENAGAQAAIVIVSRDPGAREILHRELSKRYGADYQIVVC
Ga0318492_105676211	3300031748	Soil	MSTSAGVATAADEGTAAAVRGDIAGAQAAILIVSHESGTRETLHRELSKRYGADYQIMACHQPAELAAWMRDLRAAGLP
Ga0318494_103441553	3300031751	Soil	MTAAAGTATATQEALGTAVRGETGAAQAAIVVVSRDPGTRKILSRELSKRYGADYQIVVCGRL
Ga0318494_106111891	3300031751	Soil	MTASAGVAAAADEGVADASGGETARPQAAIVIVGRDRGAGKIVHRELSKRYGADYQIVVCSRPAELASWMR
Ga0318494_106756091	3300031751	Soil	MSTSAGCATAADEGTTAAAWGEIAGPQAAILIVSRDLGTREILHRELSKRYGADYQIMACHQPAKSAAWMRELRAAGL
Ga0307477_110459571	3300031753	Hardwood Forest Soil	MTASADVAAADKGLAAAVGGEDAGAQAVIVIASREPGVREILHRELSKRYGAD
Ga0318509_108089082	3300031768	Soil	MTASAGAATAAPEDLGAAVRSETVDAQAAIVIVSRDRDTREILHRELAKRYGADYQ
Ga0318526_100374561	3300031769	Soil	MTTPAGVAAAAYDGPAATVRGEDAGARAAIVIVCREPAAREILHRELSKRYGADYQILA
Ga0318498_104855901	3300031778	Soil	MTTSAGVAAAAYDGPAATVRGEDAGARAAIVIVCREPAAREILHRELSKRYGADYQILACGRPAELAAWM
Ga0318550_100073551	3300031797	Soil	MNTSVGGTAAAYEGLAGAVRGDDAGTQAAIVIVCREPGAREILHRELSTRYGADYQIVVCYRPGELAPRMRDLRAAGLPV
Ga0318550_101542841	3300031797	Soil	MTTSAGVAAAAYDGPLAPVRGEDAGARAAIVIVCREPAAREILHRELSKRYGADYQILV
Ga0318497_101993881	3300031805	Soil	MTAAAGTATATQEALGTAVRGETGAAQAAIVVVSRDPGTRKILSRELSKRYGADYQIV
Ga0318497_102500032	3300031805	Soil	MTTSAGVAAAAYDGPLAPVRGEDAGARAAIVIVCREPAAREILHRELSKRYGADYQILA
Ga0318497_102573502	3300031805	Soil	MSTSAGCATAADEGTTATASGEIAGPQAAILIVSRDLGTREILHRELSKRYGADYQIMACHQPAESAARMREL
Ga0318568_108231732	3300031819	Soil	MTASAGAATAAPEDLGAAVRDETAGAQAAIVIVSRDRGTQEILHRELSKRYG
Ga0318517_100820941	3300031835	Soil	MTTSAGVAAAAYDGPLAPVRGEDAGARAAIVIVCREPAAREILHRELSKRYG
Ga0318512_102891712	3300031846	Soil	MSTSAGGAAADERPAAVVRSEAAVAQAAIIFVSRELSAREVLHRELSKRYGADYQVLACGRPTE
Ga0318527_104658022	3300031859	Soil	MTASACAATDALEELGAAAPGENAGTQAAIVIVSRDPGAREILHRELSKRYGADYQIVV
Ga0306925_117132211	3300031890	Soil	MTTSAGVAAAAYDGSAVTVRGEDAGARAAIVIVCREPAAREILDRELSKRYGADYQILACGRPAELAAWMRD
Ga0318522_102780011	3300031894	Soil	MTAAAGTATATQEALGTAVRGETGAAQAAIVVVSRDPGTRKILSRELSKRYGAD
Ga0318520_110601221	3300031897	Soil	MSTSAGCATAADEGTTATASGEIAGPQAAIVIVSRDRGTREILHRELSKRYC
Ga0306921_118583331	3300031912	Soil	MSTSAGCATAADEGTTAAAWGEIAGPQAAILIVSRDLGTREILHRELSKRYGADYQIMAC
Ga0310916_101731171	3300031942	Soil	MTASGGVAATAYEGPAAGVRGATTGARAAIVIVGRHPGAREILHREMSKRYGADYQLVV
Ga0310916_106057603	3300031942	Soil	MSASAGAATAADERTVRGEMAGAQAAILIVSHESGTREILYRELSKRYGADYQ
Ga0310910_106477321	3300031946	Soil	MTTSAGVAAAVYDGPLAPVRGEDAGARAAIVIVCREPAAREILHRELSKRYGADYQILVCGRPAELAA
Ga0306926_104930711	3300031954	Soil	MTTSAGVAAAAYDGSAVTVRGEDAGARAAIVIVCREPAAREILDRELSKRYGADYQILAC
Ga0306926_105149593	3300031954	Soil	MNASAGAAAAKYEGLTGAVRGETAEAQVAIVVVCREPGARVVLHRELSKRYGADYQIVACDRSAEL
Ga0306926_117874211	3300031954	Soil	MSTSAGCATAADEGTTAAAWGEIAGPQAAILIVSRDLGTREILHRELSKRYGADYQIMACHQPAESAAWMRELRAA
Ga0318530_102134553	3300031959	Soil	MTASAGAATDALEELGAAAPGENAGTQAAIVIVSRDPGAREILHREL
Ga0318531_105498741	3300031981	Soil	MTTSAGVAAAAYDGPLAPVRGEDAGARAAIVIVCREPAAREILHRELSKRYGADYQILACGRPAELAAWMR
Ga0318562_104909141	3300032008	Soil	MSTSAGVATAADEGTAAAVRGDIAEARAAILIVSHDPGTREILHRELSKRYGADYQIR
Ga0318563_106097721	3300032009	Soil	MNASVGVAAAAYEGLAGAVRGDDAGTQAAIVIVGYDPGVREILYRELSRRYGADYQI
Ga0318563_107195192	3300032009	Soil	MSTSAGGAAADERPAAVVRSEAAVAQAAIIFVSRELSAREVLHRELSKRYGADYQVLACGRPT
Ga0318569_101301041	3300032010	Soil	MTASAGAATDALEELGAAAPGENAGTQAAIVIVSRDPGAREILHRELSKRYGADYQIV
Ga0318507_102208442	3300032025	Soil	MSTSAGCATAADEGTTAAAWGEIAGPQAAILIVSRDLGTREILHRELSKRYGADYQIMACHQPAESAAWMR
Ga0318556_100941204	3300032043	Soil	MTASGGVAATAYEGPAAGVRGATTGARAAIVIVGRHPGAREILHREMSKRYGADYQLVVCSRPLVC
Ga0318556_103739591	3300032043	Soil	MSASAGAATAADERTVRGEMAGAQAAILIVSHESGTREILYRELSKRYGADYQIMACEQPAELA
Ga0318510_102291743	3300032064	Soil	MTASGGVAATAYEGPAAGVRGATTGARAAIVIVGRHLGAREILHRELSKRYGADYQLVVCSRPA
Ga0318510_102925732	3300032064	Soil	MSTSAGVATAADEGTAAVQGDIAGAQAAILIVSHDPGTREILHRELSKRYGADYQ
Ga0318514_100553221	3300032066	Soil	MTTSAGVAAAAYDGSAVTVRGEDAGARAAIVIVCREPAAREILDRELSKRYGADYQ
Ga0318514_102320962	3300032066	Soil	MSASSGAATAAPEKRGAAVRDETAEAPAAIVIVSRDHGTREILRRELSKRYGGDYQIV
Ga0318524_106497932	3300032067	Soil	MSTSTGVSPAADEGLAAAGRGDTAGAQAAIVVVCREPVAREILHRELSNR
Ga0318540_102224081	3300032094	Soil	MTASGGVAATAYEGPAAGVRGATTGARAAIVIVGRHPGAREILHREMSKRY
Ga0306920_1015335011	3300032261	Soil	MSTSAGVATAADEGTAAAVRGDIAGAQAAILIVSHESGTRETLHRELSKRYGADYQIMACHQPAEL
Ga0335079_106864951	3300032783	Soil	MTASGAAATADEGLDAAVRGETAGAQAAIVIVSRDPGAREILRRELSKRYGADYQ
Ga0335070_111810942	3300032829	Soil	VSTSADIATAADEGTAAAVPGDIAGSQAAILIVSRESDIREILYRELSKRYGADYQIMA
Ga0335081_104288721	3300032892	Soil	MSASADVAAAADEGLAADVRGETAGAQAAIVIVCREGGARQILHRELSKRYGADYQIVVC
Ga0335081_106945383	3300032892	Soil	MSTSSGVAAAADDRPTAAVRGDDAAAQAAIVIVGREPGARKVLHRELSKRYGADYQI
Ga0335081_109260341	3300032892	Soil	MSTSAGVATAADEGTAAAVRGEIAGAQAAILIVSHESGTREILHRELSQRYGAD
Ga0335081_116431321	3300032892	Soil	VHRIPDDAPEGDDMTTSAGIATAPYEELAAAVRGETAEAQAAIVIICREPAARESLHRELSKRYGADYQIVVCD
Ga0335075_111734483	3300032896	Soil	MSTSAGVDPAADERPAAAVRSEPAAGQAAIVLVSREPGTREILHRELSKRYSADYQVLAC
Ga0335083_104430003	3300032954	Soil	MSASAGAAADEGLAAAVRDDTAGTQAAIVIVSRDPRAREILHRELSKRYDADYQI
Ga0335076_100341244	3300032955	Soil	MTASAGATTAADEELAAAAVRNKPAGQQAAIVIVGREPGARQILHRELSKRYGADYQ
Ga0318519_108985021	3300033290	Soil	MTASAGAGTAAYEGLATAVRGETAGAQAAIVIVCREPGAREILYRELSKRYGVDY

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F073164

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences