Metagenome Family F073154

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F073154
Family Type	Metagenome
Number of Sequences	120
Average Sequence Length	98 residues
Representative Sequence	PAVDRFSDPDQFAAILRAAGFEVVGIDYISFSHPLKNVDELWELALGSFVRVSTVIRAQNADVQQRIRQKVEQVAQQYASPNGLYIPIAFRVIAGLR
Number of Associated Samples	86
Number of Associated Scaffolds	120

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	5.98 %
% of genes near scaffold ends (potentially truncated)	90.00 %
% of genes from short scaffolds (< 2000 bps)	89.17 %
Associated GOLD sequencing projects	79
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.47

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (72.500 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (25.000 % of family members)
Environment Ontology (ENVO)	Unclassified (44.167 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (59.167 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 42.40% β-sheet: 24.00% Coil/Unstructured: 33.60%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.47
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.47
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 120 Family Scaffolds
PF07883	Cupin_2	9.17
PF04392	ABC_sub_bind	7.50
PF08241	Methyltransf_11	7.50
PF13458	Peripla_BP_6	4.17
PF00578	AhpC-TSA	2.50
PF13428	TPR_14	2.50
PF00067	p450	1.67
PF00072	Response_reg	0.83
PF00122	E1-E2_ATPase	0.83
PF13489	Methyltransf_23	0.83
PF00892	EamA	0.83
PF02371	Transposase_20	0.83
PF00378	ECH_1	0.83
PF02113	Peptidase_S13	0.83
PF13370	Fer4_13	0.83
PF03411	Peptidase_M74	0.83
PF06863	DUF1254	0.83
PF13185	GAF_2	0.83
PF05437	AzlD	0.83

COG ID	Name	Functional Category	% Frequency in 120 Family Scaffolds
COG2984	ABC-type uncharacterized transport system, periplasmic component	General function prediction only [R]	7.50
COG2124	Cytochrome P450	Defense mechanisms [V]	1.67
COG0474	Magnesium-transporting ATPase (P-type)	Inorganic ion transport and metabolism [P]	0.83
COG2027	D-alanyl-D-alanine carboxypeptidase	Cell wall/membrane/envelope biogenesis [M]	0.83
COG2216	K+ transport ATPase, ATPase subunit KdpB	Inorganic ion transport and metabolism [P]	0.83
COG2217	Cation-transporting P-type ATPase	Inorganic ion transport and metabolism [P]	0.83
COG3547	Transposase	Mobilome: prophages, transposons [X]	0.83
COG3770	Murein endopeptidase MepA (D-alanyl-D-alanine-endopeptidase)	Cell wall/membrane/envelope biogenesis [M]	0.83
COG5361	Uncharacterized conserved protein	Mobilome: prophages, transposons [X]	0.83

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	72.50 %
Unclassified	root	N/A	27.50 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	72.50 %
Unclassified	root	N/A	27.50 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	72.50 %
Unclassified	root	N/A	27.50 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	63.33 %
Unclassified	root	N/A	27.50 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	61.67 %
Unclassified	root	N/A	27.50 %

Name	Rank	Taxonomy	Distribution
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	36.67 %
Unclassified	root	N/A	27.50 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	5.00 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	1.67 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	27.50 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	25.00 %
Geminicoccaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Geminicoccaceae	5.00 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1.67 %
Hyphomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	1.67 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	27.50 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	21.67 %
Geminicoccus	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Geminicoccaceae → Geminicoccus	5.00 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1.67 %
unclassified Hyphomicrobiaceae	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae	0.83 %
Rhodoplanes	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	27.50 %
Bradyrhizobium erythrophlei	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	5.83 %
Geminicoccus roseus	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Geminicoccaceae → Geminicoccus → Geminicoccus roseus	5.00 %
unclassified Bradyrhizobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium	2.50 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1.67 %
Bradyrhizobium manausense	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium manausense	0.83 %
Hyphomicrobiaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	0.83 %
unclassified Rhodoplanes	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes	0.83 %
Bradyrhizobium tropiciagri	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium tropiciagri	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	27.50 %
Bradyrhizobium erythrophlei	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	5.83 %
Geminicoccus roseus	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Geminicoccaceae → Geminicoccus → Geminicoccus roseus	5.00 %
Bradyrhizobium sp. URHA0002	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. URHA0002	2.50 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1.67 %
Rhodoplanes sp. Z2-YC6860	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	0.83 %
Bradyrhizobium manausense	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium manausense	0.83 %
Hyphomicrobiaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	0.83 %
Bradyrhizobium tropiciagri	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium tropiciagri	0.83 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2070309004\|prs_FIHLEPW02PY3F6	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium manausense	502	Open in IMG/M
2070309004\|prs_FIHLEPW02TJOIL	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Geminicoccaceae → Geminicoccus → Geminicoccus roseus	515	Open in IMG/M
2124908009\|FWIRA_GRAM18401AZWZ7	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	503	Open in IMG/M
3300000793\|AF_2010_repII_A001DRAFT_10066264	Not Available	785	Open in IMG/M
3300000816\|AF_2010_repII_A10DRAFT_1029421	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Geminicoccaceae → Geminicoccus → Geminicoccus roseus	581	Open in IMG/M
3300004145\|Ga0055489_10216516	Not Available	600	Open in IMG/M
3300004479\|Ga0062595_100811975	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	772	Open in IMG/M
3300004633\|Ga0066395_10627599	Not Available	632	Open in IMG/M
3300004633\|Ga0066395_10871666	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Geminicoccaceae → Geminicoccus → Geminicoccus roseus	544	Open in IMG/M
3300005093\|Ga0062594_100152475	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1517	Open in IMG/M
3300005331\|Ga0070670_102060687	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Geminicoccaceae → Geminicoccus → Geminicoccus roseus	526	Open in IMG/M
3300005332\|Ga0066388_102516021	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	936	Open in IMG/M
3300005332\|Ga0066388_106474163	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Geminicoccaceae → Geminicoccus → Geminicoccus roseus	590	Open in IMG/M
3300005332\|Ga0066388_107746801	Not Available	538	Open in IMG/M
3300005336\|Ga0070680_100066179	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2963	Open in IMG/M
3300005337\|Ga0070682_101497736	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	580	Open in IMG/M
3300005445\|Ga0070708_101191273	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Geminicoccaceae → Geminicoccus → Geminicoccus roseus	713	Open in IMG/M
3300005457\|Ga0070662_101947993	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	508	Open in IMG/M
3300005545\|Ga0070695_100230002	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1340	Open in IMG/M
3300005615\|Ga0070702_100336247	All Organisms → cellular organisms → Bacteria	1058	Open in IMG/M
3300005764\|Ga0066903_101752521	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1184	Open in IMG/M
3300005764\|Ga0066903_103033525	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	909	Open in IMG/M
3300005764\|Ga0066903_103155848	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	892	Open in IMG/M
3300005764\|Ga0066903_103444076	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	853	Open in IMG/M
3300005764\|Ga0066903_103846075	Not Available	806	Open in IMG/M
3300005764\|Ga0066903_107346085	Not Available	569	Open in IMG/M
3300005764\|Ga0066903_107462115	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	564	Open in IMG/M
3300006052\|Ga0075029_100095846	All Organisms → cellular organisms → Bacteria	1776	Open in IMG/M
3300006954\|Ga0079219_10587680	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	811	Open in IMG/M
3300006954\|Ga0079219_11308338	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	639	Open in IMG/M
3300009093\|Ga0105240_10790125	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1029	Open in IMG/M
3300009792\|Ga0126374_10340341	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1024	Open in IMG/M
3300010046\|Ga0126384_10722820	Not Available	884	Open in IMG/M
3300010046\|Ga0126384_12183535	Not Available	532	Open in IMG/M
3300010047\|Ga0126382_11463361	Not Available	626	Open in IMG/M
3300010048\|Ga0126373_10245055	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1761	Open in IMG/M
3300010366\|Ga0126379_12741608	Not Available	589	Open in IMG/M
3300010366\|Ga0126379_13605593	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. URHA0002	519	Open in IMG/M
3300010376\|Ga0126381_102583435	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	727	Open in IMG/M
3300010397\|Ga0134124_11529595	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	696	Open in IMG/M
3300011119\|Ga0105246_10965043	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	769	Open in IMG/M
3300012948\|Ga0126375_10550115	All Organisms → cellular organisms → Bacteria	871	Open in IMG/M
3300012971\|Ga0126369_10883268	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	979	Open in IMG/M
3300012971\|Ga0126369_13014829	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	551	Open in IMG/M
3300012971\|Ga0126369_13241640	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. URHA0002	533	Open in IMG/M
3300013296\|Ga0157374_11968056	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	611	Open in IMG/M
3300015372\|Ga0132256_100330257	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	1615	Open in IMG/M
3300015372\|Ga0132256_100607959	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1208	Open in IMG/M
3300015374\|Ga0132255_102929454	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	729	Open in IMG/M
3300016270\|Ga0182036_11679745	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium tropiciagri	536	Open in IMG/M
3300016319\|Ga0182033_11462266	Not Available	616	Open in IMG/M
3300016319\|Ga0182033_11703129	Not Available	571	Open in IMG/M
3300016319\|Ga0182033_11915296	Not Available	539	Open in IMG/M
3300016341\|Ga0182035_11210444	Not Available	675	Open in IMG/M
3300016357\|Ga0182032_10257395	All Organisms → cellular organisms → Bacteria	1360	Open in IMG/M
3300016371\|Ga0182034_10444123	Not Available	1073	Open in IMG/M
3300016371\|Ga0182034_11509773	Not Available	589	Open in IMG/M
3300016371\|Ga0182034_12027874	Not Available	508	Open in IMG/M
3300016387\|Ga0182040_11427484	Not Available	587	Open in IMG/M
3300016387\|Ga0182040_11505213	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	571	Open in IMG/M
3300016404\|Ga0182037_10052499	All Organisms → cellular organisms → Bacteria → Proteobacteria	2731	Open in IMG/M
3300016445\|Ga0182038_10862779	Not Available	796	Open in IMG/M
3300021476\|Ga0187846_10054904	All Organisms → cellular organisms → Bacteria	1755	Open in IMG/M
3300021560\|Ga0126371_10614207	All Organisms → cellular organisms → Bacteria	1236	Open in IMG/M
3300025899\|Ga0207642_10591912	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	689	Open in IMG/M
3300025903\|Ga0207680_11231370	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	533	Open in IMG/M
3300025920\|Ga0207649_10367908	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1068	Open in IMG/M
3300025941\|Ga0207711_12022041	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	519	Open in IMG/M
3300026035\|Ga0207703_10387398	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1294	Open in IMG/M
3300026075\|Ga0207708_10880280	Not Available	774	Open in IMG/M
3300026118\|Ga0207675_100455577	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1268	Open in IMG/M
3300026121\|Ga0207683_10057115	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	3426	Open in IMG/M
3300026817\|Ga0207775_104332	Not Available	1154	Open in IMG/M
3300026823\|Ga0207759_111537	Not Available	704	Open in IMG/M
3300027330\|Ga0207777_1002904	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	4293	Open in IMG/M
3300027765\|Ga0209073_10528276	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	501	Open in IMG/M
(restricted) 3300031150\|Ga0255311_1044185	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	936	Open in IMG/M
(restricted) 3300031197\|Ga0255310_10016991	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1868	Open in IMG/M
3300031546\|Ga0318538_10069582	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1764	Open in IMG/M
3300031564\|Ga0318573_10025570	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2710	Open in IMG/M
3300031573\|Ga0310915_10460640	Not Available	903	Open in IMG/M
3300031679\|Ga0318561_10534047	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	646	Open in IMG/M
3300031719\|Ga0306917_10827813	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	725	Open in IMG/M
3300031744\|Ga0306918_10048446	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2809	Open in IMG/M
3300031744\|Ga0306918_10432455	All Organisms → cellular organisms → Bacteria	1027	Open in IMG/M
3300031768\|Ga0318509_10855201	Not Available	503	Open in IMG/M
3300031777\|Ga0318543_10116977	All Organisms → cellular organisms → Bacteria	1156	Open in IMG/M
3300031780\|Ga0318508_1004886	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2760	Open in IMG/M
3300031794\|Ga0318503_10014832	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2118	Open in IMG/M
3300031799\|Ga0318565_10335334	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	734	Open in IMG/M
3300031805\|Ga0318497_10048141	All Organisms → cellular organisms → Bacteria → Proteobacteria	2190	Open in IMG/M
3300031833\|Ga0310917_10771985	Not Available	649	Open in IMG/M
3300031833\|Ga0310917_11052776	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	544	Open in IMG/M
3300031879\|Ga0306919_11090599	Not Available	609	Open in IMG/M
3300031890\|Ga0306925_11180425	Not Available	768	Open in IMG/M
3300031890\|Ga0306925_11733915	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	601	Open in IMG/M
3300031910\|Ga0306923_10882093	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	981	Open in IMG/M
3300031910\|Ga0306923_11419059	All Organisms → cellular organisms → Bacteria	730	Open in IMG/M
3300031910\|Ga0306923_11915003	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	605	Open in IMG/M
3300031945\|Ga0310913_10315058	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	1105	Open in IMG/M
3300031945\|Ga0310913_10967131	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	597	Open in IMG/M
3300031945\|Ga0310913_11073658	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	563	Open in IMG/M
3300031946\|Ga0310910_10168920	All Organisms → cellular organisms → Bacteria	1683	Open in IMG/M
3300031947\|Ga0310909_11330220	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	577	Open in IMG/M
3300031954\|Ga0306926_11522895	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	771	Open in IMG/M
3300031954\|Ga0306926_11694564	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	722	Open in IMG/M
3300031954\|Ga0306926_12243778	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	606	Open in IMG/M
3300032052\|Ga0318506_10246578	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	791	Open in IMG/M
3300032059\|Ga0318533_10689891	Not Available	749	Open in IMG/M
3300032059\|Ga0318533_10768784	Not Available	707	Open in IMG/M
3300032064\|Ga0318510_10095892	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1122	Open in IMG/M
3300032076\|Ga0306924_11882728	Not Available	621	Open in IMG/M
3300032076\|Ga0306924_12122603	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. URHA0002	575	Open in IMG/M
3300032090\|Ga0318518_10416066	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	689	Open in IMG/M
3300032261\|Ga0306920_100141650	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	3579	Open in IMG/M
3300032261\|Ga0306920_101090812	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1158	Open in IMG/M
3300033289\|Ga0310914_10434833	All Organisms → cellular organisms → Bacteria	1187	Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	87.50%
Host-Associated	Host-Associated	12.50%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	85.83%
Plants	Host-Associated → Plants	12.50%
Aquatic	Environmental → Aquatic	1.67%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	85.00%
Rhizosphere	Host-Associated → Plants → Rhizosphere	8.33%
Rhizoplane	Host-Associated → Plants → Rhizoplane	4.17%
Marine	Environmental → Aquatic → Marine	0.83%
Sediment	Environmental → Aquatic → Sediment	0.83%
Cave	Environmental → Terrestrial → Cave	0.83%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	65.83%
Loam	Environmental → Terrestrial → Soil → Loam	17.50%
Soil	Host-Associated → Plants → Rhizosphere → Soil	5.00%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	3.33%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	2.50%
Sand	Environmental → Terrestrial → Soil → Sand	1.67%
Wetlands	Environmental → Aquatic → Marine → Wetlands	0.83%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.83%
Unclassified	Environmental → Terrestrial → Cave → Unclassified	0.83%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.83%
Soil	Host-Associated → Plants → Rhizoplane → Soil	0.83%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	45.83%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	13.33%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	12.50%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	5.00%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	5.00%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	4.17%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	3.33%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	2.50%
Tropical Rainforest	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest	1.67%
Unclassified	Environmental → Terrestrial → Soil → Sand → Unclassified	1.67%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	0.83%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.83%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	0.83%
Unclassified	Environmental → Terrestrial → Cave → Unclassified → Unclassified	0.83%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.83%
Unclassified	Host-Associated → Plants → Rhizoplane → Soil → Unclassified	0.83%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	25.00%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	19.17%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	12.50%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	11.67%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	3.33%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	2.50%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	1.67%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	1.67%
Green-Waste Compost	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest → Green-Waste Compost	1.67%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	1.67%
Sandy Soil	Environmental → Terrestrial → Soil → Sand → Unclassified → Sandy Soil	1.67%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	1.67%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	1.67%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	1.67%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	1.67%
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	0.83%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	0.83%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.83%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.83%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	0.83%
Biofilm	Environmental → Terrestrial → Cave → Unclassified → Unclassified → Biofilm	0.83%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.83%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	0.83%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere	0.83%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.83%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.83%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.83%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.83%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2070309004	Green-waste compost microbial communities at University of California, Davis, USA, from solid state bioreactor - Luquillo Rain Forest, Puerto Rico	Environmental	Open in IMG/M
2124908009	Soil microbial communities from sample at FACE Site Metagenome WIR_Amb2	Environmental	Open in IMG/M
3300000364	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000793	Forest soil microbial communities from Amazon forest - 2010 replicate II A001	Environmental	Open in IMG/M
3300000816	Forest soil microbial communities from Amazon forest - 2010 replicate II A10	Environmental	Open in IMG/M
3300004145	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - RushOxbow_ThreeSqB_D2	Environmental	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300004633	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio	Environmental	Open in IMG/M
3300005093	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All Blocks	Environmental	Open in IMG/M
3300005331	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG	Host-Associated	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005336	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG	Environmental	Open in IMG/M
3300005337	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG	Environmental	Open in IMG/M
3300005445	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG	Environmental	Open in IMG/M
3300005457	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG	Host-Associated	Open in IMG/M
3300005545	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaG	Environmental	Open in IMG/M
3300005615	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-3 metaG	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006052	Freshwater sediment microbial communities from North America - Little Laurel Run_MetaG_LLR_2013	Environmental	Open in IMG/M
3300006954	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control	Environmental	Open in IMG/M
3300009093	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG	Host-Associated	Open in IMG/M
3300009792	Tropical forest soil microbial communities from Panama - MetaG Plot_12	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010397	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-4	Environmental	Open in IMG/M
3300011119	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG	Host-Associated	Open in IMG/M
3300012948	Tropical forest soil microbial communities from Panama - MetaG Plot_14	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300013296	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG	Host-Associated	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300016270	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080	Environmental	Open in IMG/M
3300016319	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H	Environmental	Open in IMG/M
3300016341	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170	Environmental	Open in IMG/M
3300016357	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000	Environmental	Open in IMG/M
3300016371	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172	Environmental	Open in IMG/M
3300016387	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176	Environmental	Open in IMG/M
3300016404	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082	Environmental	Open in IMG/M
3300016445	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108	Environmental	Open in IMG/M
3300021476	Biofilm microbial communities from the roof of an iron ore cave, State of Minas Gerais, Brazil - TC_06 Biofilm (v2)	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300025899	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025903	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025920	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025941	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026035	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026075	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300026118	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026121	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026817	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 17 (SPAdes)	Environmental	Open in IMG/M
3300026823	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 19 (SPAdes)	Environmental	Open in IMG/M
3300027330	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 35 (SPAdes)	Environmental	Open in IMG/M
3300027765	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100 (SPAdes)	Environmental	Open in IMG/M
3300031150 (restricted)	Sandy soil microbial communities from University of British Columbia, Vancouver, Canada - EtOH4_T0_E4	Environmental	Open in IMG/M
3300031197 (restricted)	Sandy soil microbial communities from University of British Columbia, Vancouver, Canada - EtOH1_T0_E1	Environmental	Open in IMG/M
3300031546	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f23	Environmental	Open in IMG/M
3300031564	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f21	Environmental	Open in IMG/M
3300031573	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111	Environmental	Open in IMG/M
3300031679	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f23	Environmental	Open in IMG/M
3300031719	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2)	Environmental	Open in IMG/M
3300031744	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)	Environmental	Open in IMG/M
3300031768	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f22	Environmental	Open in IMG/M
3300031777	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f24	Environmental	Open in IMG/M
3300031780	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f21	Environmental	Open in IMG/M
3300031794	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f23	Environmental	Open in IMG/M
3300031799	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f21	Environmental	Open in IMG/M
3300031805	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f23	Environmental	Open in IMG/M
3300031833	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF178	Environmental	Open in IMG/M
3300031879	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2)	Environmental	Open in IMG/M
3300031890	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300031945	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX082	Environmental	Open in IMG/M
3300031946	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF172	Environmental	Open in IMG/M
3300031947	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.T000H	Environmental	Open in IMG/M
3300031954	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)	Environmental	Open in IMG/M
3300032001	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)	Environmental	Open in IMG/M
3300032052	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f19	Environmental	Open in IMG/M
3300032059	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f27	Environmental	Open in IMG/M
3300032064	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f17	Environmental	Open in IMG/M
3300032076	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)	Environmental	Open in IMG/M
3300032090	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f22	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300033289	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN108	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID	Sample Taxon ID	Habitat	Sequence
prs_03579570	2070309004	Green-Waste Compost	VLVSKGRVALSWWNGFGKNRINGIFFEAISELGISAPGALPAGPAVDRFSDPNEFAVILRAAGFEVVGIDYISFSHSLKSVDEFWDLALGSFVRVSTLIEAQNADVQQRIRAKVEQIAQQYESANGLQIPIAFRVIAGIR
prs_07489380	2070309004	Green-Waste Compost	ALPAGPAVDRFSDPNEFAAVLRAAGFEVTGIDYISISHPLKSVDELWDLALGSFVRVSTVVGAQTADVQQRIRAKVEQIAQQYASANGLQIPIAFRVIAGIR
FWIRA_00203270	2124908009	Soil	VVGIDYISFSHPLKNVDELWELALGSFVRVSTVIQAQNADVQQRIRQKVEEVARQYASPNGLQIPIAFRVITGLR
INPhiseqgaiiFebDRAFT_1004931532	3300000364	Soil	SFSYPLKNVDDLWDLALGSFVRVSTIIHAQSADVQQRIRDKVEQMARQYTSPNGLQNSDCV*
AF_2010_repII_A001DRAFT_100662642	3300000793	Forest Soil	ELGISSPDALPAGPAADRFSDPNEFAAVLRAAGFEAVAIDYISFSHPLKSVDELWDLALGSFVRVSTVVGAQTADIQQRIRAKVEQIAQQYASANGFQIPVAFRVIAGTR*
AF_2010_repII_A10DRAFT_10294211	3300000816	Forest Soil	FFEAINELGISSPDALPAGPAADRFSDPNEFAAVLRAAGFEAVAIDYISFSHPLKSVDELWDLALGSFVRVSTVVGAQTADIQQRIRAKVEQIAQQYASANGFQIPVAFRVIAGTR*
Ga0055489_102165161	3300004145	Natural And Restored Wetlands	LGISAPGALPAGPAVDRFSDPDQFAAILRAAGFDIAGIDYISFSHPLRSVDQLWDLALGSFVRVSTVIRAQSADVQQRIRAEVERIAQQYASTNGLQIPIAFRVIAGAR*
Ga0062595_1008119751	3300004479	Soil	PAVDRFSDPDQFAAILRAAGFEVVGIDYISFSHPLKNVDELWELALGSFVRVSTVIRAQNADVQQRIRQKVEQVAQQYASPNGLYIPIAFRVIAGLR*
Ga0066395_106275991	3300004633	Tropical Forest Soil	NGIFFEAINELRLTAPGALPAGPAVDRFSDPDQFGAILSAAGFEVVGIEYVSFSHPLKNVDELWDLALGSFVRVSTIIRAQNADVQQRIRAKVEQVARQYASPNGLQIPIAFRVISGIR*
Ga0066395_108716661	3300004633	Tropical Forest Soil	NGIFFEAIKELGISAPGALPAGPAADRFSDPNEFAAVLRAAGFEAVAIDYISFSHPLKSVDELWDLALGSFVRVSTVIGAQTADVQQRMRAKVEQIAQQYASANGFQIPVAFRVIAGTR*
Ga0062594_1001524752	3300005093	Soil	IAGIDYISFSHPLRSVDELWDLALGSFVRVSTVIGAQSADVQQRIRAKVERIAQQYASANGLQIPIAFRVIAGVR*
Ga0070670_1020606871	3300005331	Switchgrass Rhizosphere	NASDALPAGPSVGQFSDPDKFAETLRAAGFKITGVEYVSFSHSLPSVDELWNLALGSFVRVSTVIQAQNIDVQQSIRKMVDQAAQQYVSPKGLDIPVAFRVVAGMR*
Ga0066388_1025160211	3300005332	Tropical Forest Soil	IFFEAINELGISAPDVLPAGPAVDRFSDPDQFAAILRAAGFEVVGIDYISFSHPLKNVGELWDLALGSFVRVSTIIRAQNADVQQRIRQKVELVTRQYASPNGLQIPIAFRVIAGLR*
Ga0066388_1064741631	3300005332	Tropical Forest Soil	KSRINGIFFEAINELGISAPGALPAGPAADRFSDPNELAAVLGAAGFEAVGIDYISFSHQLKSVDELWDLALGSFVRVSTVIGAQTADVQQRIRAKVKQIAQQYVSANGLQIPVAFRVIAGTR*
Ga0066388_1077468012	3300005332	Tropical Forest Soil	SFSHPLKSIDELWDLALGSFVRVSTVIGAQTADVQQRIRAKIEQIAQQYASANGLQIPIAFRVIAGMR*
Ga0070680_1000661794	3300005336	Corn Rhizosphere	IKELGISAPGALPAGPAVDRFSDPDQFAAVLRAAGFKVVGIDYISFSHPLKNVDELWELALGSFVRVSTVIQAQNADVQQRIRQKVEEVARQYASPNGLQIPIAFRVITGLR*
Ga0070682_1014977362	3300005337	Corn Rhizosphere	ALPAGPAVDQFSDPDQFAAILRAAGFGDIGIDYVSFSHPIKSVDELWDLALGSFVRVSTVIRAQDANVQQRIRQKVEQVTRQYASPNGLQIPIAFRVISGAR*
Ga0070708_1011912731	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	CVYRKPKPAHNGDEALGAILRAAGFEVVGIDYITFSHPLKSVDELWDLALGSFVRVSTIIRAQNPEVQEQIRQKVEQVARQYASPNGLQIPIAFRVIAGLR*
Ga0070662_1019479931	3300005457	Corn Rhizosphere	AGPAVDRFSDPDQFAAVLRAAGFKVVGIDYISFSHPLKNVDELWELALGSFVRVSTVIQAQNADVQQRIRQKVEEVARQYASPNGLQIPIAFRVITGLR*
Ga0070695_1002300021	3300005545	Corn, Switchgrass And Miscanthus Rhizosphere	FAAVLRAAGFKVVGIDYISFSHPLKNVDELWELALGSFVRVSTVIQAQNADVQQRIRQKVEEVARQYASPNGLQIPIAFRVITGLR*
Ga0070702_1003362473	3300005615	Corn, Switchgrass And Miscanthus Rhizosphere	LRAAGFEVAGIDYISFSHPLKNIDELWDLALGSFVRVSTVIRAQNADVQQQIRQKVEQVARQYASPGGFQIPIAFRVIAGIR*
Ga0066903_1017525211	3300005764	Tropical Forest Soil	IFFEAINELGISAPGALPVGPAADRFSDPNEFAAVLGAAGFEAVAIDYVSFSHPLKSVDELWDLALGSFVRVSTVIGAQTADVQQRIRAKVEQIAQQYESANGFQIPVAFRVIAGTR*
Ga0066903_1030335253	3300005764	Tropical Forest Soil	SDPNEFAAVLRAAGFEVAGIDYISFSHPLKSVDELWDLALGSFVRVATVIGAQTADVQQRIRAKVEQIAQQYASANGLQIPVAFRVITGTCGNRVS*
Ga0066903_1031558481	3300005764	Tropical Forest Soil	PLKSVDELWDLALGSFVRVSTVIGAQNADVKQRIRAKVEQITQQYASANGLQIPIAFRVIAGVR*
Ga0066903_1034440761	3300005764	Tropical Forest Soil	INELGVSAPGALPAGPAVDRFSDPDQFAAILRTAGFEVVAIDYISFLHPLQSVDELWDLALGSFVRVSTVIRAQDANVQQRIRQKVEQVTRQYTSPNGLQIPIAFRVITGVR*
Ga0066903_1038460752	3300005764	Tropical Forest Soil	EAINELGISAPGALPAGPAVDRFSDPNEFAVILRAAGFEVAGIDYISFSHPLKSVDELWDLALGSFVRVSTVIGAQNADVQQRIRAKVEQIAQQYASANGLQIPIAFRVIAGIR*
Ga0066903_1073460852	3300005764	Tropical Forest Soil	SFSHPLKSVDELWDLALGSFVRVATVIGAQTADVQQRIRAKVEQIAQQYASANGLQIPVAFRVIAGTRGNRVS*
Ga0066903_1074621151	3300005764	Tropical Forest Soil	GALPAGPAVDRFSDPDQFAAILRTAGFEVVGIDYISFLHPLQSVDELWDLALGSFVRVSTVIRAQNANVQQRIRQKVEQVTRQYASPNGLQIPIAFRVITGVR*
Ga0075029_1000958462	3300006052	Watersheds	RAAGFEVAGIDYISFTHPLKNVDELWKLALGSFVRVSTVIRAQNTDVQQQIRQKVEQVARQYASPNGLQIPIAFRVIAGVR*
Ga0079219_105876802	3300006954	Agricultural Soil	GVKTAGALPAGPSVDQFSDPDKFAAILRVAGFEAIGIDYVSFSHTIRNIDELWDLALGSFARISTIIRAQNNDAQQRIRKAVEQKAQLYASSNGLEIPIAFRVVSGRR*
Ga0079219_113083382	3300006954	Agricultural Soil	LGITAPGALPAGPAVDRFMDPDQFAALLRAAKFEVVGIDYISFSHPLKSVDELWDLALGSFVRVSTVIRAQNVDVQQRIKQKVEQVVQQYASPNGLQIPIAFRVIAGLR*
Ga0105240_107901252	3300009093	Corn Rhizosphere	APGALPAGPAVDRFSDPDQFAAVLRAAGFKVVGIDYISFSHPLKNVDELWELALGSFVRVSTVIQAQNADVQQRIRQKVEEVARQYASPNGLQIPIAFRVITGLR*
Ga0126374_103403411	3300009792	Tropical Forest Soil	GFEVVGIDYISFPYPLKNVDDLWDLALGSFVRVSTVIHAQSADVQQRIRDKVEQMARQYASPNGLQIPIAFRVIGGVR*
Ga0126384_107228202	3300010046	Tropical Forest Soil	ALEISASDALPAGPAVDRFSDPNQFAAILRAAGFEVVGTDYISFSHPLKTINELWDLALGSFVRVSTIIRAQNADVRQQIRDKVEQVARQYASPNGLQIPIAFRVIAGLR*
Ga0126384_121835351	3300010046	Tropical Forest Soil	QFASILRAAGFEVVGIDYVSFLHPLKNVEELWDLALGSFVRVSTVIRAQTADVQQRIRHKVAQAAQQYASSSGLQIPIAFRVIAGTR*
Ga0126382_114633611	3300010047	Tropical Forest Soil	MRYVSFSHAVKSIDELWEIALGSFVRVSTVIRAQNADIQRRIRDKVEQAAQQYASASDYQIPIAFRVIAGVSVKRPLGPCPLR
Ga0126373_102450551	3300010048	Tropical Forest Soil	INGIFFEAINELGISAPGALPAGPAADRFSDPSEFAAVLAAAGFEAVAIDYVSFSHPLKSVDELWGLALGSFVRVATVIGAQTADVQQRIRAKVEQIARQYESANGFQIPVAFRIVAGTR
Ga0126379_127416081	3300010366	Tropical Forest Soil	ICILATVCVAAVLTRVKRAAVNVAPGALPAGPAVDRFSDPNEFAAVLGAAGFEAVTIDYVSFSHPLKSVDELWYLALGSFVRVSTVIGAQTADVQQRIRAKVEQIAQQYESANGFQIPVAFRVIAGTR*
Ga0126379_136055931	3300010366	Tropical Forest Soil	FEAISELGISAPGALPAGPAVDRFSDPNEFAVILRAAGFEVVGIDYISFSHSLKSVDEFWDLALGSFVRVSTLIEAQNADVQQRIRAKVEQIAQQYESANGLQIPIAFRVIAGIR*
Ga0126381_1022587942	3300010376	Tropical Forest Soil	VDELWDLALGSFVRVATVIGAQTADVQQRIRAKVEQIAQQYASANGLQIPVAFRVIAGTRGNRAS*
Ga0126381_1025834351	3300010376	Tropical Forest Soil	GALPAGPAADRFSDPNEFAAVLRAAGFEAVAIDYISFSHPLKSVDELWDLALGSFVRVATVIGAQTADVQQRIRAKVEQIAQQYASANGLQIPVAFRVIAGTRGNRVS*
Ga0134124_115295952	3300010397	Terrestrial Soil	GISAPGALPAGPAVDRFSDPDQFAAVLRAAGFKVVGIDYISFSHPLKNVDELWELALGSFVRVSTVIQAQNADVQQRIRQKVEEVARQYASPNGLQIPIAFRVITGLR*
Ga0105246_109650432	3300011119	Miscanthus Rhizosphere	WWDGFGKNRINGIFFEVIKELGISAPGALPAGPAVDRFSDPDQFAAVLRAAGFKVVGIDYISFSHPLKNVDELWELALGSFVRVSTVIQAQNADVQQRIRQKVEEVARQYASPNGLQIPIAFRVITGLR*
Ga0126375_105501153	3300012948	Tropical Forest Soil	RAADFEVVGIDYISFAYPLKTVDELWDLALGSFVRVSTVILAQSAEVQRRIRDKVEQMARQYASPNGLQIPIAFRVIAGLR*
Ga0126369_108832682	3300012971	Tropical Forest Soil	APGALPAGPAVDRFSDPNEFAVILRAAGFEVVGIDYISFSHSLKSVDEFWDLALGSFVRVSTLIEAQNADVQQRIRAKVEQIAQQYESANGLQIPIAFRVIAGIR*
Ga0126369_130148291	3300012971	Tropical Forest Soil	SWWDGFGKSRINGIFFEAINELGISAPGALPAGPAADRFSDPNEFAAVLSAAGFEVAGIDYISFSHPLKTVDELWDLALGSFVRVATVIGAQTADVQQRIRAKVEQIAQQYASANGLQIPVAFRVIAGTRGNRVS*
Ga0126369_132416401	3300012971	Tropical Forest Soil	APGALPAGPAVDRFSDPNEFAVILRAAGFEVVGIDYISFSHPLKSVDELWDLALGSFVRVSTVIGAQNADVKQRIRAKVEQITQQYASANGLQIPIAFRVIAGVR*
Ga0157374_119680562	3300013296	Miscanthus Rhizosphere	PDQFAAVLRAAGFKVVGIDYISFSHPLKNVDELWELALGSFVRVSTVIQAQNADVQQRIRQKVEEVARQYASPNGLQIPIAFRVITGLR*
Ga0132256_1003302571	3300015372	Arabidopsis Rhizosphere	ADQFAAILRAAGFEVAGIDYISFPHSLKSIDELWELALGSFVRVSTVIRAQNADVQQQIRQKVDQVAQQYASPNGLQIPIAFRVIAGLR*
Ga0132256_1006079591	3300015372	Arabidopsis Rhizosphere	IFFEAINELGISAPGALPAGPAVDRFSDPDQFAAILRAAGFDIAGIDYISFSHPLRSVDELWDLALGSFVRVSTVIGAQSADIQQRIRAKVERIAQQYASANGLQIPIAFRVIAGVR*
Ga0132255_1029294542	3300015374	Arabidopsis Rhizosphere	AAGFDVVGIDYISFSHPVKNVDELWGLALGSFVRVSTVIRAQNADIQRQIRQKVDQVARQYASPNGLQIPIAFRVIAGLR*
Ga0182036_116797452	3300016270	Soil	CPLKSVDELWDLALGSFVRVSTVIAAQAGDVQQRIRAKVEQIAQQYASANGLQIPVAFRVIAGTR
Ga0182033_114622661	3300016319	Soil	ADRFSDPNEFAAVLRAAGFEVIGIDYISFSHPLKSVDELWDLALGSFVRVSTVVGAQTADVQQGIRAKVEQIARQYASANGLQIPVAFRVIAGTR
Ga0182033_117031291	3300016319	Soil	AYPLKTVDELWDLALGSFVRVSTVIRAQSAEVQQRIRDKVEQMARQYASPNGLQIPIAFRVIAGLR
Ga0182033_119152962	3300016319	Soil	DYISFAYPLKTVDELWDLALGSFVRVSTVILAQSAEVQQRIRDKVEQTARQYASPNGLQIPIAFRVIAVLR
Ga0182035_112104442	3300016341	Soil	GPAVDRFSDPDQFAAILRAADFEVVGIDYISFAYPLKTVDELWDLALGSFARVSTVILAQSAEVQQRIRDKVEQMARQYASPNGLQIPIAFRVIAGLR
Ga0182032_102573953	3300016357	Soil	GISASGALPAGPAVDRFSDPDQFAAILRAADFEVVGIDYISFAYPLKTVDELWDLALGSFVRVSTVIRAQSAEVQQMIRDKVEQMARQYASPNGLQIPIAFRVVAGLR
Ga0182034_104441232	3300016371	Soil	VILRAAGFEVVGIDYISFSHSLKSVDEFWDLALGSFVRVSTLIEAQNADVQQRIRAKVEQIAQQYESANGLQIPIAFRVIAGIR
Ga0182034_115097731	3300016371	Soil	VVGIDYISFAYPLKTVDELWDLALGSFVRVSTVILAQSAEVQQRIRDKVEQTARQYASPNGLQIPIAFRVIAVLR
Ga0182034_120278742	3300016371	Soil	LRAADFEVVGIDYISFAYPLKTVDELWDLALGSFARVSTVILAQSAEVQQRIRDKVEQMARQYASPNGLQIPIAFRVIAGLR
Ga0182040_114274841	3300016387	Soil	YPLKTVDELWDLALGSFARVSTVILAQSAEVQQRIRDKVEQMARQYASPNGLQIPIAFRVIAGLR
Ga0182040_115052131	3300016387	Soil	FEAISELGISAPGALPAGPAVDRFSDPNEFAVILRAAGFEVVGIDYISFSHSLKSVDEFWDLALGSFVRVSTLIGAQNADVQQRIRAKVEQIAQQYESANGLQIPIAFRVIAGIR
Ga0182037_100524991	3300016404	Soil	DFEVVGIDYISFAYPLKTVDELWDLALGSFVRVSTVIRAQSAEVQQMIRDKVEQMARQYASPNGLQIPIAFRVVAGLR
Ga0182038_108627792	3300016445	Soil	GRVALAWWDGFGKNRINGIFFEAINELGISASGALPAGPAVDRFSDPDQFAAILRAADFEVVGIDYISFAYPLKTVDELWDLALGSFVRVSTVIRAQSAEVQQMIRDKVEQMARQYASPNGLQIPIAFRVVAGLR
Ga0187846_100549041	3300021476	Biofilm	PLKSVDELWDLALGSFVRVSTVIAAQAADVQQRIRAKVEQIAQQYASANGLQIPVAFRVIAGTR
Ga0126371_106142071	3300021560	Tropical Forest Soil	LPAGPAVDRFSDPDQFAAILRAADFEVIGVDYISFSHPLKTVDELWDLALGSFVRVSTVILAQSAEVQRRIRDKVEQMARQYASPNGLQIPIAFRVIAGLR
Ga0207642_105919122	3300025899	Miscanthus Rhizosphere	VGIDYISFSHPLKNVDELWELALGSFVRVSTVIQAQNADVQQRIRQKVEEVARQYASPNGLQIPIAFRVITGLR
Ga0207680_112313701	3300025903	Switchgrass Rhizosphere	FGKNRINGIFFEVIKELGISAPGALPAGPAVDRFSDPDQFAAVLRAAGFKVVGIDYISFSHPLKNVDELWELALGSFVRVSTVIQAQNADVQQRIRQKVEEVARQYASPNGLQIPIAFRVITGLR
Ga0207649_103679081	3300025920	Corn Rhizosphere	GKNRINGIFFEVIKELGISAPGALPAGPAVDRFSDPDQFAAVLRAAGFKVVGIDYISFSHPLKNVDELWELALGSFVRVSTVIQAQNADVQQRIRQKVEEVARQYASPNGLQIPIAFRVITGLR
Ga0207711_120220411	3300025941	Switchgrass Rhizosphere	VIKELGISAPGALPAGPAVDRFSDPDQFAAVLRAAGFKVVGIDYISFSHPLKNVDELWELALGSFVRVSTVIQAQNADVQQRIRQKVEEVARQYASPNGLQIPIAFRVITGLR
Ga0207703_103873981	3300026035	Switchgrass Rhizosphere	GISSPGALPAGPAVDRFSDPDQFAAVLRAAGFKVVGIDYISFSHPLKNVDELWELALGSFVRVSTVIQAQNADVQQRIRQKVEEVARQYASPNGLQIPIAFRVITGLR
Ga0207708_108802801	3300026075	Corn, Switchgrass And Miscanthus Rhizosphere	MDKVFYPKLSYKINGIFFEAINELGISAPGALPAGPAVDRFSDPDQFAAVLRAAGFKVVGIDYISFSHPLKNVDELWELALGSFVRVSTVIQAQNADVQQRIRQKVEEVARQYASPNGLQIPIAFRVITGLR
Ga0207675_1004555772	3300026118	Switchgrass Rhizosphere	IFFEVIKELGISAPGALPAGPAVDRFSDPDQFAAVLRAAGFKVVGIDYISFSHPLKNVDELWELALGSFVRVSTVIQAQNADVQQRIRQKVEEVARQYASPNGLQIPIAFRVITGLR
Ga0207683_100571151	3300026121	Miscanthus Rhizosphere	PVALPAGPAVDRFSDPDQFAAVLRAAGFKVVGIDYISFSHPLKNVDELWELALGSFVRVSTVIQAQNADVQQRIRQKVEEVARQYASPNGLQIPIAFRVITGLR
Ga0207775_1043321	3300026817	Tropical Forest Soil	PAVDRFSDPDQFAAILRAAGFEVVGIDYISFLHALKNVDELWHLALGSFVRVSTIIRAQNTDVQQRIRQRVEQVARQYASPNGLQIPIAFRVIAGLR
Ga0207759_1115372	3300026823	Tropical Forest Soil	AVDRFSDPDQFAAILRAAGFEVVGIDYISFLHALKNVDELWHLALGSFVRVSTIIRAQNTDVQQRIRQRVEQVARQYASPNGLQIPIAFRVIAGLR
Ga0207777_10029041	3300027330	Tropical Forest Soil	HALKNVDELWHLALGSFVRVSTIIRAQNTDVQQRIRQKVEQVTRQYASPNGLQIPIAFRVIAGLR
Ga0209073_105282761	3300027765	Agricultural Soil	VILRAAAFEVVGIDYISFAHPLKTVDELWDLAMGSFVRVSTVILAQSAEVQQRIRDKVDEMARQYVSPNGLQIPIAFRVIAGRR
(restricted) Ga0255311_10441853	3300031150	Sandy Soil	AALLRAARFEVVGIDYISFSHPLKNVDELWDLALGSFVRVSTIIRAQNADVQRRIRQKVEQVAQQYASPNGLQIPIAFRVIAGLR
(restricted) Ga0255310_100169913	3300031197	Sandy Soil	GFDKNRINGIFFEAINELGISAPGALPAGPAVDRFSDPDQFAAILRAAGFDIAGIDYISFSHPLGSVDELWDLALGSFVRVSTVIGAQSADIQQRIRAKVERITQQYASANGLKIPIAFRVIAGVR
Ga0318538_100695821	3300031546	Soil	ILRAAGFEVVGIDYISFSHSLKSVDEFWDLALGSFVRVSTLIEAQNADVQQRIRAKVEQIAQQYESANGLQIPIAFRVIAGIR
Ga0318573_100255701	3300031564	Soil	LRAAGFEVVGIDYISFSHSLKSVDEFWDLALGSFVRVSTLIGAQNADVQQRIRAKVEQIAQQYESANGLQIPIAFRVIAGIR
Ga0310915_104606402	3300031573	Soil	VALAWWDGFGKNRINGIFFEAINELGISASGALPAGPAVDRFSDPDQFAAILRAADFEVVGIDYISFAYPLKTVDELWDLALGSFVRVSTVIRAQSAEVQQMIRDKVEQMARQYASPNGLQIPIAFRVVAGLR
Ga0318561_105340472	3300031679	Soil	VQQGFEAVAIDYISFSHPLKSVDELWDLALGSFVRVSTVVGAQTAEVQQRITSQGRTDSATIWHRPNGLQIPVAFRVIAGTR
Ga0306917_108278132	3300031719	Soil	VDRFSDPDQFAAILRAADFEVVGIDYISFAYPLKTVDELWDLALGSFVRVSTVIRAQSAEVQQMIRDKVEQMARQYASPNGLQIPIAFRVVAGLR
Ga0306918_100484463	3300031744	Soil	DEFAAVLRAAGFEVVGIDYVSFSCPLKSVDELWDLALGSFVRVSTVIAAQAGDVQQRIRAKVEQIAQQYASANGLQIPVAFRVIAGTR
Ga0306918_104324552	3300031744	Soil	PAGPAVDRFSDPDQFAAILRAADFEVVGIDYISFAYPLKTVDELWDLALGSFVRVSTVIRAQSAEVQQMIRDKVEQMARQYASPNGLQIPIAFRVVAGLR
Ga0318509_108552011	3300031768	Soil	ADFEVVGIDYISFAYPLKTVDELWDLALGSFARVSTVILAQSAEVQQRIRDKVEQMARQYASPNGLQIPIAFRVIAGLR
Ga0318543_101169771	3300031777	Soil	VLVPKGRVALAWWDGFGKNRINGIFFEAINELGISASGALPAGPAVDRFSDPDQFAAILRAADFEVVGIDYISFAYPLKTVDELWDLALGSFARVSTVILAQSAEVQQRIRDKVEQMARQYASPNGLQIPIAFRVVAGLR
Ga0318508_10048861	3300031780	Soil	AVILRAAGFEVVGIDYISFSHSLKSVDEFWDLALGSFVRVSTLIEAQNADVQQRIRAKVEQIAQQYESANGLQIPIAFRVIAGIR
Ga0318503_100148321	3300031794	Soil	IGIDYISFSHSLKSVDEFWDLALGSFVRVSTLIGAQNADVQQRIRAKVEQIAQQYESANGLQIPIAFRVIAGIR
Ga0318565_103353341	3300031799	Soil	DGFGKNPINGIFFEAISELGISAPGALPAGPAVDRFSDPNEFAVILRAAGFEVVGIDYISFSHSLKSVDEFWDLALGSFVRVSTLIEAQNADVQQRIRAKVEQIAQQYESANGLQIPIAFRVIAGIR
Ga0318497_100481413	3300031805	Soil	AVILRAAGFEVVGIDYISFSHSLKSVDEFWDLALGSFVRVSTLIGAQNADVQQRIRAKVEQIAQQYESANGLQIPIAFRVIAGIR
Ga0310917_107719852	3300031833	Soil	PAVDRFSDPDQFAAILRAADFEVVGIDYISFAYPLKTVDELWDLALGSFARVSTVILAQTAEVQQRIRDKVEQMARQYASPNGLQIPIAFRVIAGLR
Ga0310917_110527761	3300031833	Soil	VQQGFEAVAIDYISFSHPLKSVDELWDLALGSFVRVSTVIGAQTADVQQRIRAKVGQIAQQYASATGLQIPVAFRVIAGMR
Ga0306919_110905991	3300031879	Soil	ADFEVVGIDYISFAYPLKTVDELWDLALGSFARVSTVILAQTAEVQQRIRDKVEQMARQYASPNGLQIPIAFRVIAGLR
Ga0306925_111804251	3300031890	Soil	SWWDGFGKSRINGIFFEAINELGISAPGALPAGPAADRFSDPNEFAAVLRAAGFEVVGIDYISISHPLKSVDELWDLALGSFVRVSTVIGAQTADVQQRIRAKVGQIAQQYASATGLQIPVAFRVIAGMR
Ga0306925_117339152	3300031890	Soil	PGALPAGPAVDRFSDPNEFAEVLRAAGFEVAGIDSISFSHPLKSVGELWNLALGSFVRVSTVVGAQTADVQQRIRAKVEQIAQQYASANGLQIPIAFRVIAGIR
Ga0306923_108820932	3300031910	Soil	AGPAADRFSDPDEFAAVLRAAGFEVVGIDYVSFSCPLKSVDELWDLALGSFVRVSTVIAAQAGDVQQRIRAKVEQIAQQYASANGLQIPVAFRVIAGTR
Ga0306923_114190591	3300031910	Soil	IDYISFSHPLKDVGELWDLALGSFVRVSTIIRAQNADVQQRIRQKIELVTRQYASPNGLQIPIAFRVIAGLR
Ga0306923_119150031	3300031910	Soil	DRFSDPNEFAEVLRAAGFEVAGIDSISFSHPLKSVGELWNLALGSFVRVSTVVGAQTADVQQRIRAKVEQIAQQYASANGLQIPIAFRVIAGIR
Ga0310913_103150581	3300031945	Soil	VQQGFEAVAIDYISFSHPLKSVDELWDLALGSFVRVSTVVGAQTADVQQRIRAKVEQIARQYASANGLQIPVAFRVIAGTRGDRVSSVQDSS
Ga0310913_109671312	3300031945	Soil	VQQGFEAVAIDYISFSHPLKSVDELWDLALGNFVRVSTVVGAQTAEVQQRITSQGRTDSATIWHRPNGLQIPVAFRVIAGTR
Ga0310913_110736582	3300031945	Soil	LRAADFEVVGIDYISFAYPLKTVDELWDLALGSFVRVSTVIRAQSAEVQQMIRDKVEQMARQYASPNGLQIPIAFRVVAGLR
Ga0310910_101689203	3300031946	Soil	VLVPKGRVALAWWDGFGKNRINGIFFEAINELGISASGALPAGPAVDRFSDPDQFAAILRAADFEVVGIDYISFAYPLKTVDELWDLALGSFVRVSTVIRAQSAEVQQMIRDKVEQMARQYASPNGLQIPIAFRVVAGLR
Ga0310909_113302201	3300031947	Soil	PNEFAAVLRTAGFEVAGINYISFSHPLKSVDELWDLALGSFVRVSTVVGAQTADVQQRIRAKVERIAQQYASANGLQIPIAFRVIAGIR
Ga0306926_115228951	3300031954	Soil	ELGISAPGALPAGPAADRFSDPNEFASVLRAAGFEVAGIDYISFSHPLKSVDELWDLALGSFVRVSTVVGAQTADVQQRIRAKVEQIAQQYASANGLQIPIAFRVIAGIR
Ga0306926_116945642	3300031954	Soil	LGVKTGEALPAGPSADQFSDPDKFTAILRATGFEVIGIDYVSFTYAIRNVDELWDLALGSFARISTVIRAQNVDAQQRIRKAVEQKAQLYTSSNGLEIPIAFRIVSGMR
Ga0306926_122437781	3300031954	Soil	SGALPAGPAVDRFSDPDQFAAILRAADFEVVGIDYISFAYPLKTVDELWDLALGSFARVSTVILAQSAEVQQRIRDKVEQMARQYASPNGLQIPIAFRVIAGLR
Ga0306922_122993013	3300032001	Soil	KSVDELWDLALGSFVRVSTVIAAQTADIQQRIRAKVEQIARQYASANGLQMLHLE
Ga0318506_102465781	3300032052	Soil	SGALPAGPAVDRFSDPDQFAAILRAADFEVVGIDYISFAYPLKTVDELWDLALGSFVRVSTVIRAQSAEVQQMIRDKVEQMARQYASPNGLQIPIAFRVVAGLR
Ga0318533_106898911	3300032059	Soil	FAAVLRAAGFEVVGIDYISISHPLKSVDELWDLALGSFVRVSTVIGAQTADVQQRIRAKVGQIAQQYASATGLQIPVAFRVIAGMR
Ga0318533_107687842	3300032059	Soil	DFEVVGIDYISFAYPLKTVDELWDLALGSFVRVSTVILAQSAEVQQRIRDKVEQTARQYASPNGLQIPIAFRVIAVLR
Ga0318510_100958923	3300032064	Soil	VQQGFEAVAIDYISFSHPLKSVDELWDLALGSFVRVSTVVGAQTAEVQQRITSQGRTDSATIWHRPNGLQIPVAFR
Ga0306924_118827281	3300032076	Soil	GKSRINGIFFEAINELGISAPGALPAGPAADRFSDPNEFAAVLRAAGFEALAIDYISFSHPLKSVDELWDLALGSFVRVSTVIGAQTADVQQRIRAKVGQIAQQYASATGLQIPVAFRVIAGMR
Ga0306924_121226031	3300032076	Soil	LPAGPAADRFSDPNEFASVLRAAGFEVAGIDYISFSHPLKSVDELWDLALGSFVRVSTVVGAQTADVQQRIRAKVEQIARQNASANGLQIPVAFRVIAGTR
Ga0318518_104160661	3300032090	Soil	FSDPDQFAAILRAADFEVVGIDYISFAYPLKTVDELWDLALGSFARVSTVILAQSAEVQQRIRDKVEQMARQYASPNGLQIPIAFRVIAGLR
Ga0306920_1001416503	3300032261	Soil	GISAPGALPAGPAADRFSDPDEFAAVLRAAGFEVVGIDYVSFSCPLKSVDELWDLALGSFVRVSTVIAAQAGDVQQRIRAKVEQIAQQYASANGLQIPVAFRVIAGTR
Ga0306920_1010908121	3300032261	Soil	LPAGPAVDRFSDPNEFAAVLRTAGFEVAGINYISFSHPLKSVDELWDLALGSFVRVSTVIGAQTADVQQQIRVKVEQIAQQYASANGLQIPIAFRVIAGIR
Ga0310914_104348331	3300033289	Soil	PDQFAAILRAADFEVVGIDYISFAYPLKTVDELWDLALGSFVRVSTVIRAQSAEVQQMIRDKVEQMARQYASPNGLQIPIAFRVVAGLR

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters