Metagenome / Metatranscriptome Family F072975

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F072975
Family Type	Metagenome / Metatranscriptome
Number of Sequences	120
Average Sequence Length	40 residues
Representative Sequence	MTGIVPSGQGHLLTARGNVMAFKAVAAQTGGDFSLMERTVP
Number of Associated Samples	104
Number of Associated Scaffolds	120

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	90.83 %
% of genes near scaffold ends (potentially truncated)	96.67 %
% of genes from short scaffolds (< 2000 bps)	86.67 %
Associated GOLD sequencing projects	100
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.41

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (53.333 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (18.333 % of family members)
Environment Ontology (ENVO)	Unclassified (17.500 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (46.667 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 15.94% β-sheet: 0.00% Coil/Unstructured: 84.06%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.41
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.41
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 120 Family Scaffolds
PF01965	DJ-1_PfpI	9.17
PF08281	Sigma70_r4_2	7.50
PF04542	Sigma70_r2	5.83
PF00135	COesterase	2.50
PF00962	A_deaminase	1.67
PF04055	Radical_SAM	1.67
PF12900	Pyridox_ox_2	1.67
PF06441	EHN	0.83
PF00196	GerE	0.83
PF13278	Obsolete Pfam Family	0.83
PF12323	HTH_OrfB_IS605	0.83
PF01243	Putative_PNPOx	0.83
PF02771	Acyl-CoA_dh_N	0.83
PF13360	PQQ_2	0.83
PF00005	ABC_tran	0.83
PF07731	Cu-oxidase_2	0.83
PF13738	Pyr_redox_3	0.83
PF03008	DUF234	0.83
PF07730	HisKA_3	0.83
PF12697	Abhydrolase_6	0.83
PF07690	MFS_1	0.83
PF09250	Prim-Pol	0.83
PF00132	Hexapep	0.83
PF03720	UDPG_MGDP_dh_C	0.83
PF01545	Cation_efflux	0.83
PF12833	HTH_18	0.83

COG ID	Name	Functional Category	% Frequency in 120 Family Scaffolds
COG4941	Predicted RNA polymerase sigma factor, contains C-terminal TPR domain	Transcription [K]	5.83
COG0568	DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)	Transcription [K]	5.83
COG1191	DNA-directed RNA polymerase specialized sigma subunit	Transcription [K]	5.83
COG1595	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	Transcription [K]	5.83
COG2272	Carboxylesterase type B	Lipid transport and metabolism [I]	2.50
COG1816	Adenosine/6-amino-6-deoxyfutalosine deaminase	Nucleotide transport and metabolism [F]	1.67
COG1960	Acyl-CoA dehydrogenase related to the alkylation response protein AidB	Lipid transport and metabolism [I]	0.83
COG2132	Multicopper oxidase with three cupredoxin domains (includes cell division protein FtsP and spore coat protein CotA)	Cell cycle control, cell division, chromosome partitioning [D]	0.83
COG3850	Signal transduction histidine kinase NarQ, nitrate/nitrite-specific	Signal transduction mechanisms [T]	0.83
COG3851	Signal transduction histidine kinase UhpB, glucose-6-phosphate specific	Signal transduction mechanisms [T]	0.83
COG3965	Predicted Co/Zn/Cd cation transporter, cation efflux family	Inorganic ion transport and metabolism [P]	0.83
COG4564	Signal transduction histidine kinase	Signal transduction mechanisms [T]	0.83
COG4585	Signal transduction histidine kinase ComP	Signal transduction mechanisms [T]	0.83
COG0053	Divalent metal cation (Fe/Co/Zn/Cd) efflux pump	Inorganic ion transport and metabolism [P]	0.83
COG0596	2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase MenH and related esterases, alpha/beta hydrolase fold	Coenzyme transport and metabolism [H]	0.83
COG1230	Co/Zn/Cd efflux system component	Inorganic ion transport and metabolism [P]	0.83
COG1672	Predicted ATPase, archaeal AAA+ ATPase superfamily	General function prediction only [R]	0.83

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	53.33 %
Unclassified	root	N/A	46.67 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	53.33 %
Unclassified	root	N/A	46.67 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	53.33 %
Unclassified	root	N/A	46.67 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	46.67 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	36.67 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	46.67 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	35.83 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	46.67 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	22.50 %
Bryobacterales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	46.67 %
Streptosporangiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	3.33 %
Streptomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales	1.67 %
Pseudonocardiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales	1.67 %
Nakamurellales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Nakamurellales	0.83 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.83 %
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	0.83 %
Solibacteraceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae	0.83 %
Motilibacterales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Motilibacterales	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	46.67 %
Treboniaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae	2.50 %
Pseudonocardiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	1.67 %
Streptomycetaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae	1.67 %
Motilibacteraceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Motilibacterales → Motilibacteraceae	0.83 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	0.83 %
Candidatus Sulfopaludibacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter	0.83 %
Thermomonosporaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae	0.83 %
Nakamurellaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Nakamurellales → Nakamurellaceae	0.83 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	46.67 %
Trebonia	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia	2.50 %
Streptomycetaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae	1.67 %
Motilibacter	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Motilibacterales → Motilibacteraceae → Motilibacter	0.83 %
Amycolatopsis	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Amycolatopsis	0.83 %
unclassified Candidatus Sulfopaludibacter	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter → unclassified Candidatus Sulfopaludibacter	0.83 %
Actinokineospora	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Actinokineospora	0.83 %
Nakamurella	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Nakamurellales → Nakamurellaceae → Nakamurella	0.83 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	0.83 %
Thermomonosporaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae	0.83 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	46.67 %
Trebonia kvetii	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	2.50 %
Streptomycetaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae	1.67 %
Candidatus Sulfopaludibacter sp. SbA4	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter → unclassified Candidatus Sulfopaludibacter → Candidatus Sulfopaludibacter sp. SbA4	0.83 %
Amycolatopsis thailandensis	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Amycolatopsis → Amycolatopsis thailandensis	0.83 %
Actinokineospora alba	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Actinokineospora → Actinokineospora alba	0.83 %
Nakamurella multipartita	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Nakamurellales → Nakamurellaceae → Nakamurella → Nakamurella multipartita	0.83 %
Motilibacter	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Motilibacterales → Motilibacteraceae → Motilibacter	0.83 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	0.83 %
Thermomonosporaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae	0.83 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.83 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2124908016\|OU_5614	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1453	Open in IMG/M
3300001356\|JGI12269J14319_10032149	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	3457	Open in IMG/M
3300003505\|JGIcombinedJ51221_10247334	All Organisms → cellular organisms → Bacteria	725	Open in IMG/M
3300005435\|Ga0070714_102390994	All Organisms → cellular organisms → Bacteria	513	Open in IMG/M
3300005436\|Ga0070713_102030955	All Organisms → cellular organisms → Bacteria	557	Open in IMG/M
3300005439\|Ga0070711_100853805	Not Available	775	Open in IMG/M
3300005541\|Ga0070733_10254724	All Organisms → cellular organisms → Bacteria	1154	Open in IMG/M
3300005591\|Ga0070761_10605432	Not Available	682	Open in IMG/M
3300005712\|Ga0070764_10691214	All Organisms → cellular organisms → Bacteria	628	Open in IMG/M
3300006059\|Ga0075017_101163065	All Organisms → cellular organisms → Bacteria	603	Open in IMG/M
3300006162\|Ga0075030_100713235	Not Available	794	Open in IMG/M
3300009522\|Ga0116218_1221746	Not Available	851	Open in IMG/M
3300009698\|Ga0116216_10328704	Not Available	930	Open in IMG/M
3300009698\|Ga0116216_10811541	Not Available	561	Open in IMG/M
3300009700\|Ga0116217_10057152	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	2795	Open in IMG/M
3300009824\|Ga0116219_10165261	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1275	Open in IMG/M
3300010048\|Ga0126373_12956798	Not Available	530	Open in IMG/M
3300010335\|Ga0134063_10238401	All Organisms → cellular organisms → Bacteria	863	Open in IMG/M
3300010343\|Ga0074044_10817372	Not Available	609	Open in IMG/M
3300010371\|Ga0134125_11560617	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	719	Open in IMG/M
3300010371\|Ga0134125_12465466	Not Available	565	Open in IMG/M
3300010376\|Ga0126381_103030523	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	667	Open in IMG/M
3300010396\|Ga0134126_11460681	Not Available	754	Open in IMG/M
3300010876\|Ga0126361_10977413	Not Available	641	Open in IMG/M
3300013105\|Ga0157369_10082573	All Organisms → cellular organisms → Bacteria	3438	Open in IMG/M
3300014325\|Ga0163163_10280894	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Actinokineospora → Actinokineospora alba	1716	Open in IMG/M
3300014969\|Ga0157376_11709807	All Organisms → cellular organisms → Bacteria	664	Open in IMG/M
3300015356\|Ga0134073_10401449	All Organisms → cellular organisms → Bacteria	517	Open in IMG/M
3300016294\|Ga0182041_10257450	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1424	Open in IMG/M
3300016387\|Ga0182040_11689904	Not Available	540	Open in IMG/M
3300017822\|Ga0187802_10087697	Not Available	1164	Open in IMG/M
3300017823\|Ga0187818_10072375	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1485	Open in IMG/M
3300017823\|Ga0187818_10397870	Not Available	611	Open in IMG/M
3300017932\|Ga0187814_10204257	Not Available	743	Open in IMG/M
3300017937\|Ga0187809_10190081	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	725	Open in IMG/M
3300017942\|Ga0187808_10083248	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1381	Open in IMG/M
3300017942\|Ga0187808_10201767	Not Available	884	Open in IMG/M
3300017959\|Ga0187779_10365989	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	934	Open in IMG/M
3300017974\|Ga0187777_10965995	Not Available	615	Open in IMG/M
3300017975\|Ga0187782_11311308	Not Available	568	Open in IMG/M
3300017994\|Ga0187822_10222562	Not Available	638	Open in IMG/M
3300018007\|Ga0187805_10391740	Not Available	644	Open in IMG/M
3300018009\|Ga0187884_10242768	Not Available	735	Open in IMG/M
3300018482\|Ga0066669_11015684	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	748	Open in IMG/M
3300021170\|Ga0210400_11445948	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	547	Open in IMG/M
3300021171\|Ga0210405_10932569	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	658	Open in IMG/M
3300021171\|Ga0210405_11195365	Not Available	563	Open in IMG/M
3300021181\|Ga0210388_10332937	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1334	Open in IMG/M
3300021363\|Ga0193699_10213954	Not Available	801	Open in IMG/M
3300021388\|Ga0213875_10188393	Not Available	970	Open in IMG/M
3300021403\|Ga0210397_10107013	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae	1898	Open in IMG/M
3300021407\|Ga0210383_10031616	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	4423	Open in IMG/M
3300021474\|Ga0210390_10060573	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3119	Open in IMG/M
3300021475\|Ga0210392_10216852	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Motilibacterales → Motilibacteraceae → Motilibacter	1343	Open in IMG/M
3300023056\|Ga0233357_1022412	Not Available	755	Open in IMG/M
3300023101\|Ga0224557_1269521	Not Available	554	Open in IMG/M
3300025899\|Ga0207642_10576588	All Organisms → cellular organisms → Bacteria	698	Open in IMG/M
3300025909\|Ga0207705_10507701	All Organisms → cellular organisms → Bacteria	936	Open in IMG/M
3300025910\|Ga0207684_10354295	All Organisms → cellular organisms → Bacteria	1263	Open in IMG/M
3300025915\|Ga0207693_10694918	Not Available	788	Open in IMG/M
3300025922\|Ga0207646_10055825	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae	3531	Open in IMG/M
3300025928\|Ga0207700_10532591	Not Available	1041	Open in IMG/M
3300025929\|Ga0207664_10057063	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	3103	Open in IMG/M
3300025929\|Ga0207664_10801421	Not Available	847	Open in IMG/M
3300025986\|Ga0207658_11588493	All Organisms → cellular organisms → Bacteria	598	Open in IMG/M
3300026095\|Ga0207676_11785201	Not Available	614	Open in IMG/M
3300026551\|Ga0209648_10071097	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2927	Open in IMG/M
3300026551\|Ga0209648_10378614	Not Available	949	Open in IMG/M
3300026899\|Ga0209326_1004866	All Organisms → cellular organisms → Bacteria	1007	Open in IMG/M
3300027029\|Ga0208731_1011801	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	904	Open in IMG/M
3300027502\|Ga0209622_1068966	Not Available	645	Open in IMG/M
3300027787\|Ga0209074_10100317	All Organisms → cellular organisms → Bacteria	978	Open in IMG/M
3300027812\|Ga0209656_10040346	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2703	Open in IMG/M
3300027812\|Ga0209656_10209837	Not Available	939	Open in IMG/M
3300027824\|Ga0209040_10085117	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1819	Open in IMG/M
3300027824\|Ga0209040_10383888	Not Available	657	Open in IMG/M
3300027825\|Ga0209039_10265744	Not Available	682	Open in IMG/M
3300027867\|Ga0209167_10545875	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Amycolatopsis → Amycolatopsis thailandensis	635	Open in IMG/M
3300028780\|Ga0302225_10393562	Not Available	651	Open in IMG/M
3300028877\|Ga0302235_10459765	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	542	Open in IMG/M
3300029920\|Ga0302142_1191831	Not Available	622	Open in IMG/M
3300029943\|Ga0311340_10107955	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3041	Open in IMG/M
3300029999\|Ga0311339_10087107	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3925	Open in IMG/M
3300030054\|Ga0302182_10396707	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	578	Open in IMG/M
3300030057\|Ga0302176_10099473	Not Available	1137	Open in IMG/M
3300030520\|Ga0311372_12320442	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	612	Open in IMG/M
3300030580\|Ga0311355_10024658	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae	7420	Open in IMG/M
3300030730\|Ga0307482_1259715	All Organisms → cellular organisms → Bacteria	548	Open in IMG/M
3300031090\|Ga0265760_10035328	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter → unclassified Candidatus Sulfopaludibacter → Candidatus Sulfopaludibacter sp. SbA4	1480	Open in IMG/M
3300031234\|Ga0302325_10096529	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	5557	Open in IMG/M
3300031234\|Ga0302325_10214034	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3287	Open in IMG/M
3300031525\|Ga0302326_10104894	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	5043	Open in IMG/M
3300031525\|Ga0302326_12030741	Not Available	741	Open in IMG/M
3300031525\|Ga0302326_12208968	Not Available	702	Open in IMG/M
3300031543\|Ga0318516_10137312	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1401	Open in IMG/M
3300031682\|Ga0318560_10355129	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	792	Open in IMG/M
3300031708\|Ga0310686_109638760	Not Available	1253	Open in IMG/M
3300031708\|Ga0310686_117741799	Not Available	573	Open in IMG/M
3300031723\|Ga0318493_10634905	Not Available	596	Open in IMG/M
3300031748\|Ga0318492_10332538	All Organisms → cellular organisms → Bacteria	793	Open in IMG/M
3300031748\|Ga0318492_10556723	Not Available	610	Open in IMG/M
3300031753\|Ga0307477_10743758	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Nakamurellales → Nakamurellaceae → Nakamurella → Nakamurella multipartita	654	Open in IMG/M
3300031754\|Ga0307475_10791130	Not Available	753	Open in IMG/M
3300031771\|Ga0318546_10520150	Not Available	835	Open in IMG/M
3300031782\|Ga0318552_10155331	Not Available	1151	Open in IMG/M
3300031792\|Ga0318529_10393523	Not Available	645	Open in IMG/M
3300031799\|Ga0318565_10327133	All Organisms → cellular organisms → Bacteria	744	Open in IMG/M
3300031805\|Ga0318497_10249332	Not Available	985	Open in IMG/M
3300031910\|Ga0306923_10551335	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1299	Open in IMG/M
3300031910\|Ga0306923_11251377	All Organisms → cellular organisms → Bacteria → Terrabacteria group	790	Open in IMG/M
3300031942\|Ga0310916_10900549	Not Available	742	Open in IMG/M
3300032001\|Ga0306922_11010498	Not Available	858	Open in IMG/M
3300032001\|Ga0306922_12090557	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	549	Open in IMG/M
3300032008\|Ga0318562_10653019	Not Available	606	Open in IMG/M
3300032060\|Ga0318505_10541877	Not Available	548	Open in IMG/M
3300032805\|Ga0335078_10055283	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	5850	Open in IMG/M
3300032828\|Ga0335080_11580608	Not Available	646	Open in IMG/M
3300032893\|Ga0335069_10553285	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1327	Open in IMG/M
3300032898\|Ga0335072_10578443	Not Available	1136	Open in IMG/M
3300033807\|Ga0314866_075301	Not Available	583	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	93.33%
Host-Associated	Host-Associated	6.67%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	78.33%
Aquatic	Environmental → Aquatic	14.17%
Plants	Host-Associated → Plants	6.67%
Unclassified	Environmental → Unclassified	0.83%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	65.83%
Freshwater	Environmental → Aquatic → Freshwater	12.50%
Peat	Environmental → Terrestrial → Peat	12.50%
Rhizosphere	Host-Associated → Plants → Rhizosphere	3.33%
Sediment	Environmental → Aquatic → Sediment	1.67%
Rhizoplane	Host-Associated → Plants → Rhizoplane	1.67%
Roots	Host-Associated → Plants → Roots	1.67%
Unclassified	Environmental → Unclassified → Unclassified	0.83%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	45.83%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	12.50%
Loam	Environmental → Terrestrial → Soil → Loam	12.50%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	12.50%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	7.50%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	1.67%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	1.67%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	1.67%
Soil	Host-Associated → Plants → Rhizosphere → Soil	1.67%
Unclassified	Environmental → Unclassified → Unclassified → Unclassified	0.83%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.83%
Unclassified	Host-Associated → Plants → Roots → Unclassified	0.83%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	25.83%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	16.67%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	12.50%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	7.50%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	7.50%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	7.50%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	5.00%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	5.00%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	2.50%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	1.67%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	1.67%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	1.67%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	1.67%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.83%
Unclassified	Environmental → Unclassified → Unclassified → Unclassified → Unclassified	0.83%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	0.83%
Unclassified	Host-Associated → Plants → Roots → Unclassified → Unclassified	0.83%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	18.33%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	10.83%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	7.50%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	5.00%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	5.00%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	5.00%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	4.17%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	3.33%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	3.33%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	3.33%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	2.50%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	2.50%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	2.50%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	2.50%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	2.50%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	1.67%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	1.67%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	1.67%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	1.67%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	1.67%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	0.83%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.83%
Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Peatland	0.83%
Bog Forest Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil	0.83%
Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil	0.83%
Bog	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog	0.83%
	Environmental → Unclassified → Unclassified → Unclassified → Unclassified →	0.83%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.83%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	0.83%
Switchgrass Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Switchgrass Rhizosphere	0.83%
Plant Roots	Host-Associated → Plants → Roots → Unclassified → Unclassified → Plant Roots	0.83%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.83%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.83%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	0.83%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	0.83%
Boreal Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Boreal Forest Soil	0.83%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2124908016	Sample 642	Environmental	Open in IMG/M
3300001356	Peat soil microbial communities from Weissenstadt, Germany - SII-SIP-2007	Environmental	Open in IMG/M
3300003505	Forest soil microbial communities from Harvard Forest LTER, USA - Combined assembly of forest soil metaG samples (ASSEMBLY_DATE=20140924)	Environmental	Open in IMG/M
3300005435	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG	Environmental	Open in IMG/M
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental	Open in IMG/M
3300005439	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG	Environmental	Open in IMG/M
3300005541	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen05_05102014_R1	Environmental	Open in IMG/M
3300005591	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF1	Environmental	Open in IMG/M
3300005712	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 4	Environmental	Open in IMG/M
3300006059	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2012	Environmental	Open in IMG/M
3300006162	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2012	Environmental	Open in IMG/M
3300009522	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_5_LS metaG	Environmental	Open in IMG/M
3300009698	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_3_AS metaG	Environmental	Open in IMG/M
3300009700	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_4_PS metaG	Environmental	Open in IMG/M
3300009824	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_6_BS metaG	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010335	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_09082015	Environmental	Open in IMG/M
3300010343	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM1	Environmental	Open in IMG/M
3300010371	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010396	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-2	Environmental	Open in IMG/M
3300010876	Boreal forest soil eukaryotic communities from Alaska, USA - W5-5 Metatranscriptome (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300013105	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG	Host-Associated	Open in IMG/M
3300014325	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG	Host-Associated	Open in IMG/M
3300014969	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG	Host-Associated	Open in IMG/M
3300015356	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_20cm_5_24_1 metaG	Environmental	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300016387	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176	Environmental	Open in IMG/M
3300017822	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_2	Environmental	Open in IMG/M
3300017823	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_3	Environmental	Open in IMG/M
3300017932	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW-S_4	Environmental	Open in IMG/M
3300017937	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_4	Environmental	Open in IMG/M
3300017942	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_3	Environmental	Open in IMG/M
3300017959	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP10_10_MG	Environmental	Open in IMG/M
3300017974	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP5_10_MG	Environmental	Open in IMG/M
3300017975	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0715_SJ02_MP15_20_MG	Environmental	Open in IMG/M
3300017994	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SourceSoil_2	Environmental	Open in IMG/M
3300018007	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_5	Environmental	Open in IMG/M
3300018009	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_20_40	Environmental	Open in IMG/M
3300018482	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_118	Environmental	Open in IMG/M
3300021170	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-M	Environmental	Open in IMG/M
3300021171	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-M	Environmental	Open in IMG/M
3300021181	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-O	Environmental	Open in IMG/M
3300021363	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L3c2	Environmental	Open in IMG/M
3300021388	Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8	Host-Associated	Open in IMG/M
3300021403	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-O	Environmental	Open in IMG/M
3300021407	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-O	Environmental	Open in IMG/M
3300021474	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-O	Environmental	Open in IMG/M
3300021475	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-O	Environmental	Open in IMG/M
3300023056	Soil microbial communities from Shasta-Trinity National Forest, California, United States - GEON-SFM-MS2	Environmental	Open in IMG/M
3300023101	Peat soil microbial communities from Stordalen Mire, Sweden - 717 S3 10-14	Environmental	Open in IMG/M
3300025899	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025909	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025910	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025915	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025922	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025928	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025929	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300025986	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026095	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026551	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm (SPAdes)	Environmental	Open in IMG/M
3300026899	Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM1H0_O3 (SPAdes)	Environmental	Open in IMG/M
3300027029	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF045 (SPAdes)	Environmental	Open in IMG/M
3300027502	Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM3H0_M2 (SPAdes)	Environmental	Open in IMG/M
3300027787	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter (SPAdes)	Environmental	Open in IMG/M
3300027812	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM2 (SPAdes)	Environmental	Open in IMG/M
3300027824	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM3 (SPAdes)	Environmental	Open in IMG/M
3300027825	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM1 (SPAdes)	Environmental	Open in IMG/M
3300027867	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen05_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300028780	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_E3_2	Environmental	Open in IMG/M
3300028877	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_N3_3	Environmental	Open in IMG/M
3300029920	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Bog_E1_3	Environmental	Open in IMG/M
3300029943	I_Palsa_N3 coassembly	Environmental	Open in IMG/M
3300029999	I_Palsa_E3 coassembly	Environmental	Open in IMG/M
3300030054	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_N3_1	Environmental	Open in IMG/M
3300030057	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_E1_1	Environmental	Open in IMG/M
3300030520	III_Palsa_N2 coassembly	Environmental	Open in IMG/M
3300030580	II_Palsa_N1 coassembly	Environmental	Open in IMG/M
3300030730	Metatranscriptome of hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031090	Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZI1 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031234	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_2	Environmental	Open in IMG/M
3300031525	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_3	Environmental	Open in IMG/M
3300031543	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f20	Environmental	Open in IMG/M
3300031682	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f22	Environmental	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300031723	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f23	Environmental	Open in IMG/M
3300031748	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f22	Environmental	Open in IMG/M
3300031753	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_515	Environmental	Open in IMG/M
3300031754	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_515	Environmental	Open in IMG/M
3300031771	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f19	Environmental	Open in IMG/M
3300031782	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f20	Environmental	Open in IMG/M
3300031792	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f23	Environmental	Open in IMG/M
3300031799	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f21	Environmental	Open in IMG/M
3300031805	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f23	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300031942	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF176	Environmental	Open in IMG/M
3300032001	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)	Environmental	Open in IMG/M
3300032008	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f18	Environmental	Open in IMG/M
3300032060	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f18	Environmental	Open in IMG/M
3300032805	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.2	Environmental	Open in IMG/M
3300032828	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.4	Environmental	Open in IMG/M
3300032893	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.1	Environmental	Open in IMG/M
3300032898	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.1	Environmental	Open in IMG/M
3300033807	Tropical peat soil microbial communities from peatlands in Loreto, Peru - MAQ_100_10	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
OU_01459820	2124908016		MTGIVPPGQGHLLTARGNVMAFKAVAEQTGGDFSLM
JGI12269J14319_100321495	3300001356	Peatlands Soil	MTSIVPSGQGHLLTARGNVMAFKAVADQTGGDFSLMERTVPPGA
JGIcombinedJ51221_102473341	3300003505	Forest Soil	MGDXVPSGQGRLXRARGNVMAFKAVAAQTGGDFSLMERTVPPGART
Ga0070714_1023909942	3300005435	Agricultural Soil	MTGIVPPGQGHLLTARGNVMAFKAVAEQTGGDFSLMERTV
Ga0070713_1020309551	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	MTGIVSPGQGHLLTARGNVMAFKAVADQTGGDFSLMERTVPP
Ga0070711_1008538051	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	VSEPSIVSAGQGKVVTARGSVMAFKAVAAQTGGDFSLMERTVPPRGR
Ga0070733_102547242	3300005541	Surface Soil	VSESSIVSAGKGKIVTARGSVMAFKAVGAQTGGDFSLMERTVPPR
Ga0070761_106054322	3300005591	Soil	MDGIVSPGQGHLLTARGNVLAFKAVAAQTGGDFSLME
Ga0070764_106912142	3300005712	Soil	MADIVRPGQGHLLTARGNVLAFKAVADQTGGDFSLMERTVP
Ga0075017_1011630652	3300006059	Watersheds	MTSIVPSGQGHLLTARGNVMAFKAVADQTGGDFSLMERTVPPG
Ga0075030_1007132351	3300006162	Watersheds	MISIVPSGQGHLLTARGNVMAFKAVADQTGGDFSLMERTV
Ga0116218_12217461	3300009522	Peatlands Soil	MTQIVPSGEGHLLTARGNVMAFKAVADQTGGDFSLMERTVPPGA
Ga0116216_103287041	3300009698	Peatlands Soil	MTSIVPSGQGHLLTARGNVMAFKAVADQTGGDFSLMERTVPP
Ga0116216_108115411	3300009698	Peatlands Soil	MTPIVPSGQGHLLTARGNVLAFKAVAAQTGGDFSLMERTVPPG
Ga0116217_100571521	3300009700	Peatlands Soil	MTPIVPSGQGHRLTARGNVLAFKAVAAQTGGDFSLME
Ga0116219_101652611	3300009824	Peatlands Soil	MTEIVPSGQGRMLTARGNVMAFKAVADQTGGDFSLMERTVPPGAR
Ga0126373_129567981	3300010048	Tropical Forest Soil	VTESSIVPAGKGKIVSARGSVMAFKAIAAQTGGDF
Ga0134063_102384011	3300010335	Grasslands Soil	MTGIVPPGQGHLLTARGNVMAFKAVADQTGGDFSLMERTVP
Ga0074044_108173722	3300010343	Bog Forest Soil	MGRIGGMTSIVPSGEGHLLTARGNVMAFKAVADQTGGDFSLMERTVPP
Ga0134125_115606171	3300010371	Terrestrial Soil	VSESSIVSAGKGKVVSARGSVMAFKAIAAQTDGDFSLME
Ga0134125_124654662	3300010371	Terrestrial Soil	MTGIVSPGQGHLLTARGNVMAFKAVAEQTGGDFSLMERTVP
Ga0126381_1030305232	3300010376	Tropical Forest Soil	VITIAIVPPGAGHVLTARGSVMAFKAVAAQTGGDFSLMERTLPSGG
Ga0134126_114606811	3300010396	Terrestrial Soil	MTGIVSPGQGHLLTARGNVMAFKAVADQTGGDFSL
Ga0126361_109774132	3300010876	Boreal Forest Soil	MSDIVPSGQGRLLTARGNVMAFKAVAAQTGGDFSLMERTVPPGARTP
Ga0157369_100825735	3300013105	Corn Rhizosphere	MSDSSVIPAGMGKIVTARGSVMAFKAVAAQTGGDFSLMER
Ga0163163_102808944	3300014325	Switchgrass Rhizosphere	MTRIVSPGQGHLLTARGNVMAFKAVAEQTGGDFSLM
Ga0157376_117098071	3300014969	Miscanthus Rhizosphere	MTGIVPPGQGHLLTARGNVMAFKAVAEQTGGDFSLMERTVPPG
Ga0134073_104014492	3300015356	Grasslands Soil	MTGIVPPGQGQLLTARGNVMAFKAVAEQTGGDFSLMERTVPPGAR
Ga0182041_102574503	3300016294	Soil	MTDIVPSGQGHRLTARGNVMAFKAVADQTGGDFSLM
Ga0182040_116899042	3300016387	Soil	MTGVVSSGQGHMLTARGNVMAFKAVAAQTGGDFSLME
Ga0187802_100876972	3300017822	Freshwater Sediment	MTGIVPSGQGRLLTARGNVMAFKAVAAQTGGDFSLMERTV
Ga0187818_100723753	3300017823	Freshwater Sediment	MTGIVPSGQGRLLTARGNVMAFKAVAAQTGGDFSLMERTVPPG
Ga0187818_103978702	3300017823	Freshwater Sediment	MTGIVPSGQGRLLTARGNVMAFKAVAAQTGGDFSLMERTVP
Ga0187814_102042571	3300017932	Freshwater Sediment	MTGIVPSGQGRLLSARGNVMAFKAVAAQTGGDFSLMERTVPP
Ga0187809_101900811	3300017937	Freshwater Sediment	MTGIVPSGQGRLLTARGNVMAFKAVAAQTGGDFSL
Ga0187808_100832483	3300017942	Freshwater Sediment	MTGIVPSGQGRLLTARGNVMAFKAVAAQTGGDFSLMER
Ga0187808_102017672	3300017942	Freshwater Sediment	MTGEGVIPAGKGSKIYSARGSVMAFKAVADQTSGDFSL
Ga0187779_103659892	3300017959	Tropical Peatland	MTGIVPSGQGRLLTARGNVMAFKAVAAQTGGDFSLMERTVPPGARGTG
Ga0187777_109659951	3300017974	Tropical Peatland	MNEIVPSGIVSAGQGHLLTARGNVMAFKAVADQTGGDFS
Ga0187782_113113082	3300017975	Tropical Peatland	MTGIVPSGQGHLLTARGNVMAFKAVAAQTGGDFSLMERTVP
Ga0187822_102225622	3300017994	Freshwater Sediment	MTDIVPAGRGQLLTARGNVMAFKAVAGQTGGGFSLMERTVPPG
Ga0187805_103917402	3300018007	Freshwater Sediment	VTESGIIAAGKGTIVAARGSVMAFKAIAAQTGGDF
Ga0187884_102427682	3300018009	Peatland	MNDVVPSGQGHLLTARGNVMAFKAVAAQTRGDFSL
Ga0066669_110156841	3300018482	Grasslands Soil	MDVLRPGEGHLLTAQGSTMAFKAVAAQTGGDFVLVPRGV
Ga0210400_114459481	3300021170	Soil	MTDPSVMPAGQGRILSARGSVMAFKAGAEQTGGDFSLMERILPPRG
Ga0210405_109325691	3300021171	Soil	MTGIVPSGQGRLLTARGNVMAFKAVAAQTGGDFSLMERSRYGMEPAGQNPLL
Ga0210405_111953652	3300021171	Soil	MANIVPSGQGRLLRARGNVMAFKAVAAQTGGDFSLM
Ga0210388_103329371	3300021181	Soil	VSEPGIIAAGEGTIVAARGSVMAFKAIAAQTGGDFSLME
Ga0193699_102139542	3300021363	Soil	MTGIVPPGQGHLLTARGNEMAFKAVAEQTGGDFSLMERTVPPGAR
Ga0213875_101883932	3300021388	Plant Roots	MSEIVPSGQGHLLTARGNVMAFKAVAEQTGGDFSLMERSVPAGAPM
Ga0210397_101070131	3300021403	Soil	VSESSIVSTGKGKVVTARGSVMAFKAIAAQTDGDFS
Ga0210383_100316164	3300021407	Soil	VSEPGIIAAGEGTIVAARGSVMAFKAIAAQTGGDFSLMERTVPPR
Ga0210390_100605735	3300021474	Soil	MGDIVPSGQGRLLRARGNVMAFKAVAAQTGGDFSLMERTVPPG
Ga0210392_102168521	3300021475	Soil	MTDHSVIPAGLGRILKARGSVMAFKAGREQTGGDFSLMER
Ga0233357_10224122	3300023056	Soil	VDGIVPPGAGHILTARGSVMAFKAVAAQTGGDFSLMERT
Ga0224557_12695212	3300023101	Soil	VAGNGVIPPGAGHTLTARGSIMAFKAVAEQTGGDFSL
Ga0207642_105765882	3300025899	Miscanthus Rhizosphere	MTDIVPPGQGHLLTARGNVMAFKAVAEQTGGDFSLMERTVPPGAR
Ga0207705_105077011	3300025909	Corn Rhizosphere	MTDIVPPGQGHLLTARGNVMAFKAVAEQTGGAGDFLLV
Ga0207684_103542952	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	MTGIVPPGQGHLLTARGNVMAFKAVAEQTGGDFSLME
Ga0207693_106949181	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	MTGIVPPGQGHLLTARGNVMAFKAVAEQTGGDFSLMER
Ga0207646_100558253	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	VSEPSIIAAGKGTIVTARGSVMAFKAIAAQTGGDFSLMERT
Ga0207700_105325911	3300025928	Corn, Switchgrass And Miscanthus Rhizosphere	VSEPSIIAAGKGTIVTARGSVMAFKAIAAQTGGDFSLMERTVPPRGRR
Ga0207664_100570634	3300025929	Agricultural Soil	MTGIVPSGQGRLLTARGNVMAFKAVAAQTGGDFSLME
Ga0207664_108014212	3300025929	Agricultural Soil	VTESGIIGAGQGSIVAARGSVMAFKAIAAQTGGDFSLMERTVPPRGRR
Ga0207658_115884932	3300025986	Switchgrass Rhizosphere	MTGIVPPGQGHLLTARGNVMAFKAVAEQTGGDFSLMERT
Ga0207676_117852012	3300026095	Switchgrass Rhizosphere	MTGIVSPGQGHLLTARGNVMAFKAVADQTGGDFSLM
Ga0209648_100710973	3300026551	Grasslands Soil	MTGIVPSGQGRLLTARGNVMAFKAVAAQTGGDFSLMERTVPLMSRYGMEPA
Ga0209648_103786142	3300026551	Grasslands Soil	MTGIVPSGQGHMLTARGNVMAFKAVAGQTGRPNGS
Ga0209326_10048662	3300026899	Forest Soil	MTDIVPPGQGHLLTARGNVMAFKAVAEQTGGDFSL
Ga0208731_10118012	3300027029	Forest Soil	MTGIVPSGQGHLLTARGNVMAFKAVADQTGGDFSLME
Ga0209622_10689662	3300027502	Forest Soil	VSEPSIVSAGKGKIVTARGSVMAFKAIAAQTDGDFSLME
Ga0209074_101003171	3300027787	Agricultural Soil	MTGIVPPGQGHLLTARGNVMAFKAVAEQTGGDFSLMERTVPP
Ga0209656_100403464	3300027812	Bog Forest Soil	MTEIVPSGEGHLLTARGNVMAFKAVADQTGGDFSLMERTV
Ga0209656_102098371	3300027812	Bog Forest Soil	MGRIGGMTSIVPSGEGHLLTARGNVMAFKAVADQTGGD
Ga0209040_100851174	3300027824	Bog Forest Soil	MTEIVPSGEGHLLTARGNVMAFKAVADQTGGDFSLM
Ga0209040_103838881	3300027824	Bog Forest Soil	MGRIGGMTSIVPSGEGHLLTARGNVMAFKAVADQTGGDFSLM
Ga0209039_102657442	3300027825	Bog Forest Soil	MGRIGGMTSIVPSGEGHLLTARGNVMAFKAVADQTGGDFSLMERTVPPGA
Ga0209167_105458752	3300027867	Surface Soil	VSESSIVSAGKGKIVTARGSVMAFKAVAAQTGGDFSLMERTVPPRG
Ga0302225_103935622	3300028780	Palsa	MTDVVPSGQGHLLTARGNVMAFKAVAAQTGGDFSLMERTVPP
Ga0302235_104597651	3300028877	Palsa	VTESSIIAAGKGNIVTARGSVMAFKAIAAQTDGDFSLMERT
Ga0302142_11918311	3300029920	Bog	VAGPGVVPPGEGHLLTARGSVMAFKAVAAQTGGDFSL
Ga0311340_101079554	3300029943	Palsa	MTDVVPSGQGHLLTARGNVMAFKAVAAQTGGDFSLMER
Ga0311339_100871075	3300029999	Palsa	MSDVVPSGQGHLLTARGNVMAFKAVAAQTGGDFSLMERTVPPGA
Ga0302182_103967071	3300030054	Palsa	MSDVVPSGQGHLLTARGNVMAFKAVAAQTGGDFSLMERTVPS
Ga0302176_100994731	3300030057	Palsa	MTDVVPSGQGHLLTARGNVMAFKAVAAQTGGDFSLMERTVPPG
Ga0311372_123204422	3300030520	Palsa	VTETSIISAGNGKIVTARGSVMAFKAIAAQTDGDFSLMERTVPPH
Ga0311355_100246581	3300030580	Palsa	MSDVVPSGQGHLLTARGNVMAFKAVAAQTGGDFSLMERTVPPG
Ga0307482_12597151	3300030730	Hardwood Forest Soil	MTDDGRRIVPAGEGHLLTARGNLLAFKAVAAETGGDFSLMERTV
Ga0265760_100353281	3300031090	Soil	MTPIVPAGAGHVLTARGSVMAFKAVARQTGGDFSL
Ga0302325_100965291	3300031234	Palsa	MSDVVPSGQGHLLTARGNVMAFKAVAAQTGGDFSLMERTVPP
Ga0302325_102140341	3300031234	Palsa	MSDVVPSGQGHLLTARGNVMAFKAVAAQTGGDFSLMERTVP
Ga0302326_101048941	3300031525	Palsa	VSESSIVSAGKGKIVAARGSVMAFKAVAATTDGDFSLMERTVPAHGR
Ga0302326_120307412	3300031525	Palsa	MSDVVPSGQGHLLTARGNVMAFKAVAAQTGGDFSLME
Ga0302326_122089681	3300031525	Palsa	MTGIVPSGQGRLLTARGNVMAFKAVAAQTGGDFSLM
Ga0318516_101373121	3300031543	Soil	MTDIVPPGQGHLLTARGNVMAFKAVAEQTSGDFSLMERTVP
Ga0318560_103551291	3300031682	Soil	MTGIVPSGQGRRLTARGNVMAFKAVAAQTGGDFSLMERTVPP
Ga0310686_1096387603	3300031708	Soil	VGGVTESSIIPAGAGQLVTARGSVMAFKAVAASTGGDFSLMERTVPPHGRR
Ga0310686_1177417992	3300031708	Soil	VPAGRGQLFTARGNVMAFKAVAAQTGGDFSLMERTVP
Ga0318493_106349052	3300031723	Soil	MTDIVPAGRGLLLTARGNVMAFKAVAAQTDGDFSVMER
Ga0318492_103325381	3300031748	Soil	MTEIVPPGQGHLLTARGNVMAFKAVAEQTSGDFSLME
Ga0318492_105567232	3300031748	Soil	MTGVVSLGQGHMLTARGNVMAFKAVAAQTGGDFSLMERTVPPGA
Ga0307477_107437582	3300031753	Hardwood Forest Soil	MTGIVPSGQGRVLTARGNVMAFKAVAAQTGGDFSLMERTRAALPV
Ga0307475_107911302	3300031754	Hardwood Forest Soil	VTESGIIGAGQGAIVAARGSVMAFKAIAAQTGGDFSLMERTVPPR
Ga0318546_105201502	3300031771	Soil	MTDIVPAGRGRLLTARGNVMAFKAVAAQTGGDFSVM
Ga0318552_101553312	3300031782	Soil	MTDIVPSGQGRLLTARGNVMAFKAVAAQTGGDFSLMERT
Ga0318529_103935232	3300031792	Soil	MTGVVSSGQGHMLTARGNVMAFKAVAAQTGGDFSLMERTVQP
Ga0318565_103271332	3300031799	Soil	MTGIVPPGQGRQLTARGNVMAFKAVADQTGGDFSLMER
Ga0318497_102493321	3300031805	Soil	MTDIVPSGQGRLLTARGNVMAFKAVAAQTGGDFSLMER
Ga0306923_105513351	3300031910	Soil	MTDIVPSGQGRLLTARGNVMAFKAVAAQTDGDFSLMER
Ga0306923_112513771	3300031910	Soil	MTDIVPPGQGHLLTARGNVMAFKAVAEQTGGDFSLMERTVPP
Ga0310916_109005492	3300031942	Soil	MTDIVPAGRGRLLTARGNVMAFKAVAAQTGGDFSVMERTVP
Ga0306922_110104982	3300032001	Soil	MTEIVPPGQGHLLTARGNVMAFKAVAEQTSGDFSL
Ga0306922_120905571	3300032001	Soil	MTTIVPSGEGHLLTARGSVMAFKAVAAQTGGDFSL
Ga0318562_106530192	3300032008	Soil	MTGIVPPGEGHLLTARGNVMAFKAVADQTGGTMPVM
Ga0318505_105418771	3300032060	Soil	MTEIVPPGQGHLLTARGNVMAFKAVAEQTSGDFSLMERTVP
Ga0335078_100552837	3300032805	Soil	MTDIVPPGQGHLLTARGNVMAFKAVAEQTGGDFSLMERTVPPGART
Ga0335080_115806082	3300032828	Soil	MTDIVPPGQGHLLTARGNVMAFKAVAEQTGGDFSLMERTVPPG
Ga0335069_105532852	3300032893	Soil	MTGIIGPGEGHLFTARGSTMAFKALAAQTGGDFSLMERT
Ga0335072_105784432	3300032898	Soil	MVSMTEHSIIPAGKGRIVGARGSVMAFKAVAEQTDGGFSLMER
Ga0314866_075301_475_582	3300033807	Peatland	MTGIVPSGQGHLLTARGNVMAFKAVTEQTSGDFSLM

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F072975

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences