NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F072879

Metagenome / Metatranscriptome Family F072879

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F072879
Family Type Metagenome / Metatranscriptome
Number of Sequences 121
Average Sequence Length 43 residues
Representative Sequence MFPDHHLPYKTERSLRPDRRPLPRASEIRLRVKRAESRKEA
Number of Associated Samples 93
Number of Associated Scaffolds 121

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 91.74 %
% of genes near scaffold ends (potentially truncated) 11.57 %
% of genes from short scaffolds (< 2000 bps) 75.21 %
Associated GOLD sequencing projects 86
AlphaFold2 3D model prediction Yes
3D model pTM-score0.36

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Bacteria (95.868 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil
(17.355 % of family members)
Environment Ontology (ENVO) Unclassified
(23.140 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
(66.116 % of family members)


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Multiple Sequence Alignments

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 23.19%    β-sheet: 0.00%    Coil/Unstructured: 76.81%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  		pTM-score: 0.36
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 121 Family Scaffolds
PF05534HicB 55.37
PF13349DUF4097 14.88
PF13345Obsolete Pfam Family 9.92
PF07690MFS_1 3.31
PF00266Aminotran_5 2.48
PF05977MFS_3 1.65
PF06737Transglycosylas 1.65
PF02934GatB_N 0.83
PF00368HMG-CoA_red 0.83
PF01063Aminotran_4 0.83
PF02686Glu-tRNAGln 0.83
PF028262-Hacid_dh_C 0.83
PF01425Amidase 0.83
PF02245Pur_DNA_glyco 0.83
PF01041DegT_DnrJ_EryC1 0.83

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 121 Family Scaffolds
COG1598Antitoxin component HicB of the HicAB toxin-antitoxin systemDefense mechanisms [V] 55.37
COG4226Predicted nuclease of the RNAse H fold, HicB familyGeneral function prediction only [R] 55.37
COG0115Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyaseAmino acid transport and metabolism [E] 1.65
COG2814Predicted arabinose efflux permease AraJ, MFS familyCarbohydrate transport and metabolism [G] 1.65
COG0064Asp-tRNAAsn/Glu-tRNAGln amidotransferase B subunitTranslation, ribosomal structure and biogenesis [J] 0.83
COG0154Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit or related amidaseTranslation, ribosomal structure and biogenesis [J] 0.83
COG0399dTDP-4-amino-4,6-dideoxygalactose transaminaseCell wall/membrane/envelope biogenesis [M] 0.83
COG0436Aspartate/methionine/tyrosine aminotransferaseAmino acid transport and metabolism [E] 0.83
COG0520Selenocysteine lyase/Cysteine desulfuraseAmino acid transport and metabolism [E] 0.83
COG0626Cystathionine beta-lyase/cystathionine gamma-synthaseAmino acid transport and metabolism [E] 0.83
COG0721Asp-tRNAAsn/Glu-tRNAGln amidotransferase C subunitTranslation, ribosomal structure and biogenesis [J] 0.83
COG1104Cysteine desulfurase/Cysteine sulfinate desulfinase IscS or related enzyme, NifS familyAmino acid transport and metabolism [E] 0.83
COG1257Hydroxymethylglutaryl-CoA reductaseLipid transport and metabolism [I] 0.83
COG20943-methyladenine DNA glycosylase MpgReplication, recombination and repair [L] 0.83
COG2511Archaeal Glu-tRNAGln amidotransferase subunit E, contains GAD domainTranslation, ribosomal structure and biogenesis [J] 0.83
COG2873O-acetylhomoserine/O-acetylserine sulfhydrylase, pyridoxal phosphate-dependentAmino acid transport and metabolism [E] 0.83

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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
All OrganismsrootAll Organisms95.87 %
UnclassifiedrootN/A4.13 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
2166559006|FI_contig05297All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia1404Open in IMG/M
2170459007|GJ61VE201EW2MZAll Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium539Open in IMG/M
2189573003|GZIR7W401EW2VRAll Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium511Open in IMG/M
3300000887|AL16A1W_10143948All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium873Open in IMG/M
3300000956|JGI10216J12902_104334207All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Glycomycetales → Glycomycetaceae1201Open in IMG/M
3300001361|A30PFW6_1323352All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium730Open in IMG/M
3300001537|A2065W1_11227179All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium815Open in IMG/M
3300002568|C688J35102_119663538Not Available743Open in IMG/M
3300003321|soilH1_10024748All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia5137Open in IMG/M
3300003321|soilH1_10032079All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria2939Open in IMG/M
3300004156|Ga0062589_100073991All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia2042Open in IMG/M
3300004479|Ga0062595_100104317All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia1518Open in IMG/M
3300004479|Ga0062595_100240520All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales1163Open in IMG/M
3300005093|Ga0062594_101165868All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium760Open in IMG/M
3300005167|Ga0066672_10698878All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium650Open in IMG/M
3300005171|Ga0066677_10400028All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium785Open in IMG/M
3300005176|Ga0066679_10489192Not Available803Open in IMG/M
3300005176|Ga0066679_10772121All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium616Open in IMG/M
3300005177|Ga0066690_10374607All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium966Open in IMG/M
3300005177|Ga0066690_10874833All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium576Open in IMG/M
3300005177|Ga0066690_10994492All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium528Open in IMG/M
3300005184|Ga0066671_10131620All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales1434Open in IMG/M
3300005332|Ga0066388_100318135All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium2202Open in IMG/M
3300005332|Ga0066388_101067576All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1363Open in IMG/M
3300005332|Ga0066388_101363257All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium1228Open in IMG/M
3300005332|Ga0066388_104402694All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium718Open in IMG/M
3300005339|Ga0070660_100491659All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales1020Open in IMG/M
3300005341|Ga0070691_10199558All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales1050Open in IMG/M
3300005435|Ga0070714_100019861All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia5481Open in IMG/M
3300005435|Ga0070714_100097973All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria2579Open in IMG/M
3300005436|Ga0070713_101446231All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium667Open in IMG/M
3300005454|Ga0066687_10375730All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales818Open in IMG/M
3300005454|Ga0066687_10811514All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium557Open in IMG/M
3300005529|Ga0070741_10249444All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium1692Open in IMG/M
3300005529|Ga0070741_10989899All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales722Open in IMG/M
3300005529|Ga0070741_11334774All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium599Open in IMG/M
3300005532|Ga0070739_10001789All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria30939Open in IMG/M
3300005537|Ga0070730_10004151All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria12821Open in IMG/M
3300005538|Ga0070731_10039439All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia3171Open in IMG/M
3300005557|Ga0066704_10017172All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia4189Open in IMG/M
3300005557|Ga0066704_10206388All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium1330Open in IMG/M
3300005559|Ga0066700_10179288All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1453Open in IMG/M
3300005560|Ga0066670_10063056All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia1966Open in IMG/M
3300005560|Ga0066670_10126176All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1469Open in IMG/M
3300005576|Ga0066708_10744744All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium618Open in IMG/M
3300005713|Ga0066905_100657760All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales894Open in IMG/M
3300005764|Ga0066903_100082399All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia4211Open in IMG/M
3300005764|Ga0066903_101043716All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium1500Open in IMG/M
3300005764|Ga0066903_101561948All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales1249Open in IMG/M
3300005764|Ga0066903_101979178All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium1119Open in IMG/M
3300005764|Ga0066903_104169894All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales774Open in IMG/M
3300005764|Ga0066903_108046232All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium541Open in IMG/M
3300005891|Ga0075283_1035961All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium822Open in IMG/M
3300005896|Ga0075282_1014343All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium980Open in IMG/M
3300005898|Ga0075276_10086152All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales683Open in IMG/M
3300006046|Ga0066652_100140710All Organisms → cellular organisms → Bacteria2009Open in IMG/M
3300006173|Ga0070716_100832189All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium717Open in IMG/M
3300006800|Ga0066660_10737954Not Available805Open in IMG/M
3300006806|Ga0079220_10307246All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium984Open in IMG/M
3300006806|Ga0079220_10324095All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia965Open in IMG/M
3300006904|Ga0075424_101392721All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium745Open in IMG/M
3300006914|Ga0075436_101065388All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium608Open in IMG/M
3300006954|Ga0079219_10147137All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium1251Open in IMG/M
3300007775|Ga0102953_1158528All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium992Open in IMG/M
3300009093|Ga0105240_10011692All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria12197Open in IMG/M
3300009093|Ga0105240_10709156All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium1097Open in IMG/M
3300009792|Ga0126374_11846611Not Available507Open in IMG/M
3300010043|Ga0126380_10709984All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium810Open in IMG/M
3300010358|Ga0126370_10198794All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium1512Open in IMG/M
3300010358|Ga0126370_10968572All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium774Open in IMG/M
3300010360|Ga0126372_12117788All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium611Open in IMG/M
3300010361|Ga0126378_10024373All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia5301Open in IMG/M
3300010373|Ga0134128_10010817All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium10923Open in IMG/M
3300010376|Ga0126381_100047662All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria5228Open in IMG/M
3300010396|Ga0134126_10638911All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium1214Open in IMG/M
3300010396|Ga0134126_11631644All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium709Open in IMG/M
3300010398|Ga0126383_12425778Not Available609Open in IMG/M
3300012198|Ga0137364_10597546All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium831Open in IMG/M
3300012200|Ga0137382_10520538All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium846Open in IMG/M
3300012201|Ga0137365_11028273All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium597Open in IMG/M
3300012207|Ga0137381_10559090All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium997Open in IMG/M
3300012211|Ga0137377_10350958All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium1412Open in IMG/M
3300012349|Ga0137387_10492708All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales890Open in IMG/M
3300012958|Ga0164299_10299909All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium987Open in IMG/M
3300013105|Ga0157369_10119328All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium2799Open in IMG/M
3300013772|Ga0120158_10029199All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria4255Open in IMG/M
3300015160|Ga0167642_1003503All Organisms → cellular organisms → Bacteria3008Open in IMG/M
3300015357|Ga0134072_10217288All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium671Open in IMG/M
3300015371|Ga0132258_10715888All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium2521Open in IMG/M
3300017947|Ga0187785_10412660All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium652Open in IMG/M
3300017961|Ga0187778_10468188All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium834Open in IMG/M
3300018431|Ga0066655_10183470All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium1277Open in IMG/M
3300018433|Ga0066667_10156259All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium1617Open in IMG/M
3300018468|Ga0066662_10295515All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium1357Open in IMG/M
3300019888|Ga0193751_1002304All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria11635Open in IMG/M
3300019888|Ga0193751_1003810All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria8751Open in IMG/M
3300021560|Ga0126371_10292221All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1754Open in IMG/M
3300021560|Ga0126371_11221357All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium888Open in IMG/M
3300022467|Ga0224712_10273405All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium785Open in IMG/M
3300025912|Ga0207707_10478606All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium1064Open in IMG/M
3300025913|Ga0207695_10452075All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium1167Open in IMG/M
3300025914|Ga0207671_10827191All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium734Open in IMG/M
3300025917|Ga0207660_11637442All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium518Open in IMG/M
3300025928|Ga0207700_10602996All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium977Open in IMG/M
3300025928|Ga0207700_10671734All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium924Open in IMG/M
3300026312|Ga0209153_1168712All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium796Open in IMG/M
3300026325|Ga0209152_10323845All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium582Open in IMG/M
3300026552|Ga0209577_10107569All Organisms → cellular organisms → Bacteria2251Open in IMG/M
3300027773|Ga0209810_1001115All Organisms → cellular organisms → Bacteria44581Open in IMG/M
3300027857|Ga0209166_10012767All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium5387Open in IMG/M
3300027869|Ga0209579_10252994All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium946Open in IMG/M
3300031231|Ga0170824_104271550All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium691Open in IMG/M
3300031341|Ga0307418_1001284All Organisms → cellular organisms → Bacteria7905Open in IMG/M
3300031938|Ga0308175_100000648All Organisms → cellular organisms → Bacteria23329Open in IMG/M
3300031938|Ga0308175_100120123All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium2463Open in IMG/M
3300031939|Ga0308174_10114892All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium1953Open in IMG/M
3300031939|Ga0308174_11166701All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium656Open in IMG/M
3300031996|Ga0308176_10011361All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria6265Open in IMG/M
3300032180|Ga0307471_100821368All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium1097Open in IMG/M
3300032770|Ga0335085_10004481All Organisms → cellular organisms → Bacteria23119Open in IMG/M
3300032783|Ga0335079_12103833All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium541Open in IMG/M


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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Soil17.36%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil9.09%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil8.26%
Surface SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil7.44%
Vadose Zone SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil4.96%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural → Soil4.13%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere4.13%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil3.31%
PermafrostEnvironmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost3.31%
Corn RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere3.31%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil2.48%
Terrestrial SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil2.48%
Agricultural SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil2.48%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil2.48%
Rice Paddy SoilEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Rice Paddy Soil2.48%
Sugarcane Root And Bulk SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Sugarcane Root And Bulk Soil1.65%
Grass SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Grass Soil1.65%
SoilEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Soil1.65%
Tropical PeatlandEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland1.65%
SoilEnvironmental → Terrestrial → Soil → Loam → Grasslands → Soil1.65%
Corn RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere1.65%
Agricultural SoilEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil1.65%
Populus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere1.65%
Salt MarshEnvironmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh0.83%
Glacier Forefield SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil0.83%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil0.83%
Grass SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Grass Soil0.83%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere0.83%
Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil0.83%
Hardwood Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil0.83%
SoilEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Soil0.83%
Arabidopsis RhizosphereHost-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere0.83%
Corn RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere0.83%
Corn RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere0.83%

Visualization
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Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
2166559006Grass soil microbial communities from Rothamsted Park, UK - FI (heavy metals 2g/kg) assembledEnvironmentalOpen in IMG/M
2170459007Grass soil microbial communities from Rothamsted Park, UK - March 2009 indirect in plug lysis (for fosmid construction) 10-21cmEnvironmentalOpen in IMG/M
2189573003Grass soil microbial communities from Rothamsted Park, UK - FE2 (NaCl 30g/L 5ml)EnvironmentalOpen in IMG/M
3300000887Permafrost active layer microbial communities from McGill Arctic Research Station, Canada - (A3-65cm-16A)- 1 week illuminaEnvironmentalOpen in IMG/M
3300000956Soil microbial communities from Great Prairies - Kansas, Native Prairie soilEnvironmentalOpen in IMG/M
3300001361Permafrost active layer microbial communities from McGill Arctic Research Station, Canada - (A30-PF)- 6 month illuminaEnvironmentalOpen in IMG/M
3300001537Permafrost active layer microbial communities from McGill Arctic Research Station, Canada - (A20-65 cm-11A)- 1 week illuminaEnvironmentalOpen in IMG/M
3300002568Grasslands soil microbial communities from Hopland, California, USA - 2EnvironmentalOpen in IMG/M
3300003321Sugarcane bulk soil Sample H1EnvironmentalOpen in IMG/M
3300004156Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 1EnvironmentalOpen in IMG/M
3300004479Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAsEnvironmentalOpen in IMG/M
3300005093Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All BlocksEnvironmentalOpen in IMG/M
3300005167Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_121EnvironmentalOpen in IMG/M
3300005171Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_126EnvironmentalOpen in IMG/M
3300005176Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_128EnvironmentalOpen in IMG/M
3300005177Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_139EnvironmentalOpen in IMG/M
3300005184Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_120EnvironmentalOpen in IMG/M
3300005332Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)EnvironmentalOpen in IMG/M
3300005339Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaGHost-AssociatedOpen in IMG/M
3300005341Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-1 metaGEnvironmentalOpen in IMG/M
3300005435Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaGEnvironmentalOpen in IMG/M
3300005436Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaGEnvironmentalOpen in IMG/M
3300005454Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_136EnvironmentalOpen in IMG/M
3300005529Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen16_06102014_R1EnvironmentalOpen in IMG/M
3300005532Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen14_06102014_R1EnvironmentalOpen in IMG/M
3300005537Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen01_05102014_R1EnvironmentalOpen in IMG/M
3300005538Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen03_05102014_R1EnvironmentalOpen in IMG/M
3300005557Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_153EnvironmentalOpen in IMG/M
3300005559Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_149EnvironmentalOpen in IMG/M
3300005560Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_119EnvironmentalOpen in IMG/M
3300005576Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_157EnvironmentalOpen in IMG/M
3300005713Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)EnvironmentalOpen in IMG/M
3300005764Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)EnvironmentalOpen in IMG/M
3300005891Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_10C_80N_304EnvironmentalOpen in IMG/M
3300005896Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_10C_80N_204EnvironmentalOpen in IMG/M
3300005898Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_5C_80N_405EnvironmentalOpen in IMG/M
3300006046Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_101EnvironmentalOpen in IMG/M
3300006173Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaGEnvironmentalOpen in IMG/M
3300006800Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109EnvironmentalOpen in IMG/M
3300006806Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100EnvironmentalOpen in IMG/M
3300006904Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3Host-AssociatedOpen in IMG/M
3300006914Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5Host-AssociatedOpen in IMG/M
3300006954Agricultural soil microbial communities from Georgia to study Nitrogen management - GA ControlEnvironmentalOpen in IMG/M
3300007775Soil microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG R2A_C_D2_MGEnvironmentalOpen in IMG/M
3300009093Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaGHost-AssociatedOpen in IMG/M
3300009792Tropical forest soil microbial communities from Panama - MetaG Plot_12EnvironmentalOpen in IMG/M
3300010043Tropical forest soil microbial communities from Panama - MetaG Plot_26EnvironmentalOpen in IMG/M
3300010358Tropical forest soil microbial communities from Panama - MetaG Plot_3EnvironmentalOpen in IMG/M
3300010360Tropical forest soil microbial communities from Panama - MetaG Plot_6EnvironmentalOpen in IMG/M
3300010361Tropical forest soil microbial communities from Panama - MetaG Plot_23EnvironmentalOpen in IMG/M
3300010373Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4EnvironmentalOpen in IMG/M
3300010376Tropical forest soil microbial communities from Panama - MetaG Plot_28EnvironmentalOpen in IMG/M
3300010396Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-2EnvironmentalOpen in IMG/M
3300010398Tropical forest soil microbial communities from Panama - MetaG Plot_35EnvironmentalOpen in IMG/M
3300012198Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_20_16 metaGEnvironmentalOpen in IMG/M
3300012200Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_20_16 metaGEnvironmentalOpen in IMG/M
3300012201Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_40_16 metaGEnvironmentalOpen in IMG/M
3300012207Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_115_16 metaGEnvironmentalOpen in IMG/M
3300012211Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_40_16 metaGEnvironmentalOpen in IMG/M
3300012349Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Sage2_R_115_16 metaGEnvironmentalOpen in IMG/M
3300012958Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_221_MGEnvironmentalOpen in IMG/M
3300013105Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaGHost-AssociatedOpen in IMG/M
3300013772Permafrost microbial communities from Nunavut, Canada - A10_80_0.25MEnvironmentalOpen in IMG/M
3300015160Arctic soil microbial communities from a glacier forefield, Russell Glacier, Kangerlussuaq, Greenland (Sample G7C, Adjacent to main proglacial river, mid transect (Watson river))EnvironmentalOpen in IMG/M
3300015357Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_20cm_5_0_1 metaGEnvironmentalOpen in IMG/M
3300015371Combined assembly of cpr5 and col0 rhizosphere and soilHost-AssociatedOpen in IMG/M
3300017947Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0815_BV2_4_20_MGEnvironmentalOpen in IMG/M
3300017961Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP5_20_MGEnvironmentalOpen in IMG/M
3300018431Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_104EnvironmentalOpen in IMG/M
3300018433Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116EnvironmentalOpen in IMG/M
3300018468Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111EnvironmentalOpen in IMG/M
3300019888Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L1c2EnvironmentalOpen in IMG/M
3300021560Tropical forest soil microbial communities from Panama - MetaG Plot_4EnvironmentalOpen in IMG/M
3300022467Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5pm-2 (Metagenome Metatranscriptome) (v2)EnvironmentalOpen in IMG/M
3300025912Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025913Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025914Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025917Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025928Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300026312Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_120 (SPAdes)EnvironmentalOpen in IMG/M
3300026325Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_107 (SPAdes)EnvironmentalOpen in IMG/M
3300026552Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109 (SPAdes)EnvironmentalOpen in IMG/M
3300027773Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen14_06102014_R1 (SPAdes)EnvironmentalOpen in IMG/M
3300027857Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen01_05102014_R1 (SPAdes)EnvironmentalOpen in IMG/M
3300027869Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen03_05102014_R1 (SPAdes)EnvironmentalOpen in IMG/M
3300031231Coassembly Site 11 (all samples) - Champenoux / Amance forestEnvironmentalOpen in IMG/M
3300031341Salt marsh sediment microbial communities from the Plum Island Ecosystem LTER, Massachusetts, United States - WE1602-20EnvironmentalOpen in IMG/M
3300031938Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.C.R1EnvironmentalOpen in IMG/M
3300031939Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.P.R2EnvironmentalOpen in IMG/M
3300031996Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.C.R2EnvironmentalOpen in IMG/M
3300032180Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515EnvironmentalOpen in IMG/M
3300032770Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.5EnvironmentalOpen in IMG/M
3300032783Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.3EnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
FI_002294102166559006Grass SoilMFPDHHLPYDKQERPLRPDRRPLPLANEIRLRVKRAASRREV
L02_003144402170459007Grass SoilMFPDHHYSPDFSNRQARTDARPLPRANEIRLRIKRALTTQES
FE2_015600202189573003Grass SoilMYPDHILPDYCDKPERLLRPDRRPLPQSNEIRIRVKRAAARPEA
AL16A1W_1014394823300000887PermafrostMFPDHHLPYKTERSLRPDRRPLPRASEIRLRVKRAESRKEA*
JGI10216J12902_10433420723300000956SoilMYPSHLLPDYYDKPERLLRPDRRPLPQSNEIRIRVKRATARSEA*
A30PFW6_132335213300001361PermafrostGADMFPDHHLPYKTERSLRPDRRPLPRASEIRLRVKRAESRKEA*
A2065W1_1122717913300001537PermafrostQLKGADMFPDHHLPYKTERSLRPDRRPLPRASEIRLRVKRAESRKEA*
C688J35102_11966353823300002568SoilMYPDHLLPDYYDKPERPRPDRRPLPQSNEIRIRVKRAEARREA*
soilH1_1002474853300003321Sugarcane Root And Bulk SoilMFPDYHLPYNRVERTLRPDRRPLPSDSEIRLRVKRALHKREA*
soilH1_1003207923300003321Sugarcane Root And Bulk SoilMLPDYHLPYKQERILRPDRRPLPRASEIRLRVKRMLSRQEAC*
Ga0062589_10007399123300004156SoilMFSDPHLPNELERSLRLRPDRRPLPRANEIRLRIKRAVSRGEA*
Ga0062595_10010431733300004479SoilMFPDYHLPFEKAERPLRPDRRLLPKDSEIRLRIKRALSKREA*
Ga0062595_10024052023300004479SoilMFPDYHLPYNKSERSLRPDRRPLPKDSEIRLRVKRALSRREV*
Ga0062594_10116586823300005093SoilMFPDYHLPYRGERSLRPDRRPLPKDSEIRLRVKRALSKRGLEG*
Ga0066672_1069887823300005167SoilPQLKGGGMFPDHHLPYDKAERTLRPDRRPLPKDSEIRMRIKRALRKREA*
Ga0066677_1040002823300005171SoilMFTDHHLPYAKLEPSLRPDRRPLPRASEIRLRVKRAVSRGEV*
Ga0066679_1048919213300005176SoilMFTDHYLPYAKLEPSLRPDRRPLPRASEIRLRVKRAVSRGEV*
Ga0066679_1077212113300005176SoilMFPDHHLPYDKAERTLRPDRRPLPKDSEIRMRIKRALRKREA*
Ga0066690_1037460733300005177SoilMFPDHHLPYDKAERTLRPDRRPLPKDSEIRMRIKRALSKREA*
Ga0066690_1087483313300005177SoilRPQLKGGGMFPDYHLPYNRVERSLRPDRRPLPKDSEIRLRVKRALHKREA*
Ga0066690_1099449213300005177SoilMFPDHHLPYEKPERLLRPDRRPLPRASEIRLRVKRAMNRQ
Ga0066671_1013162023300005184SoilMFPDHHLPYSTGRELRPDRRPLPRANEIKLRVKRALHRGEV*
Ga0066388_10031813523300005332Tropical Forest SoilMFSDPHLPNELERPLRFRPDRRPLPRANEIRLRIKRAVIRGEA*
Ga0066388_10106757633300005332Tropical Forest SoilMFPDHHLPYDRPDRLPRPDRRPLPSASEIRLRVKRATTAKEV*
Ga0066388_10136325723300005332Tropical Forest SoilMYPDHLLPDYHDKPERLLRPDRRPLPQSNEIRIRVKRAIARPES*
Ga0066388_10440269423300005332Tropical Forest SoilMFPDHHLPYDRPDRLPRPDRRPLPSANEIRLRVKRATTAKEA*
Ga0070660_10049165923300005339Corn RhizosphereMFADYHLPYRGERSLRPDRRPLPKDSEIRLRVKRALSKRGREG*
Ga0070691_1019955823300005341Corn, Switchgrass And Miscanthus RhizosphereMFPDYHLPYKGERSLRPDRRPLPKDSEIRLRVKRALSKRGLEG*
Ga0070714_10001986153300005435Agricultural SoilMFPDHLLPDYCDKPERLLRPDRRPLPQSNEIRIRVKRAATRPEA*
Ga0070714_10009797333300005435Agricultural SoilMFPDYHLPYKFESSLRPDRRPLPQANEIRMRVKRILSKRAA*
Ga0070713_10144623113300005436Corn, Switchgrass And Miscanthus RhizosphereMFPDYHLPYEKAERPLRPDRRVLPKDSEIRLRIKRALSKREA*
Ga0066687_1037573023300005454SoilMFPDHHLPYNKAERTLRPDRRPLPKDSEIRMRIKRALRKREA*
Ga0066687_1081151413300005454SoilMLPDYHLPYKQERVLRPDRRPLPRANEIRLRVKRMLSRQEAC*
Ga0070741_1024944433300005529Surface SoilMLPEHHLPYSPERSLRPDRRPLPGAHEIRLRVKRGLSRREV*
Ga0070741_1098989923300005529Surface SoilMFPDHHLPYNTVPKLRPDRRPLPRASEIRIRVKRTLHRGEV*
Ga0070741_1133477423300005529Surface SoilMFPDHHLPYDTVRNLRADRRPLPRACEIRLRIKRALARGEA*
Ga0070739_10001789163300005532Surface SoilMFPAPHLPYETGRRLRPDRRPLPRAGEIRIRVKRTLHREED*
Ga0070730_1000415173300005537Surface SoilMFPDHHLPYKVERPLRPDRRPLPQSNEIRLRIKRALDKREA*
Ga0070731_1003943923300005538Surface SoilMLPDHHLPYTPDRTLRPDRRPLPRANEIRLRIKRKLTRRGA*
Ga0066704_1001717243300005557SoilMFPDYHLPYNRVERSLRPDRRPLPKDSEIRLRVKRALHKREA*
Ga0066704_1020638823300005557SoilMFPDHHLPYEKPERLLRPDRRPLPRASEIRLRVKRAMNRQGA*
Ga0066700_1017928833300005559SoilDYHLPYKFESSLRPDRRPLPQANEIRMRVKRILSKRAA*
Ga0066670_1006305633300005560SoilMLPAHHLPYTPDRTLRPDRRPLPRASEIRLRIKHALSRRGV*
Ga0066670_1012617633300005560SoilMFPDHHLPYNKAERTLRPDRRPLPKDSEIRMRIKRALSKREA*
Ga0066708_1074474423300005576SoilMFPDHHLPYDKAERSLRPDRRPLPKDSEIRMRIKRALSKREA*
Ga0066905_10065776023300005713Tropical Forest SoilMFPDHLLPDYCDKPERLLRPDRRPLPQSNEIRIRVKRATARPEA*
Ga0066903_10008239963300005764Tropical Forest SoilMFPDRHLPYDKPEGLLRPDQRPLPRANEIRLRIKRATSPKEA*
Ga0066903_10104371623300005764Tropical Forest SoilMFPDHHLPYRTERPLRPDRRPLPRSGEIRIRVKRTLHRGEV*
Ga0066903_10156194823300005764Tropical Forest SoilMFPDHHLPYSKLEGSLRPDRRPLPSANEIRIRVKRTASHSKEV*
Ga0066903_10197917833300005764Tropical Forest SoilMYPEHLLPHYSDKPERLLRPDRRPLPQSNEIRIRVKRAIARPES*
Ga0066903_10416989423300005764Tropical Forest SoilMFPDHHLPYDRPERLLRPDRRPLPSASEIRLRVKRATSATSPKEA*
Ga0066903_10804623223300005764Tropical Forest SoilMYPDHLLPDYYDKPERLLRPDRRPLPQSNEIRIRVKRAIARPES*
Ga0075283_103596113300005891Rice Paddy SoilMFPDPHITTSLDRLPRPDRRAVPRSSEIRLRVKRATSRQEA*
Ga0075282_101434333300005896Rice Paddy SoilMFPDYHLPYNKVERSLRPDRRPLPKDSEIRLRIKRALHRREA
Ga0075276_1008615223300005898Rice Paddy SoilMFPDHQLPYERPERPLRPDRRPLPRASEIRLRVKRFESRVGA*
Ga0066652_10014071023300006046SoilMFSDPHLPNELERSLRLRPDRRPLPRAHEIRLRIKRAVTRGEA*
Ga0070716_10083218923300006173Corn, Switchgrass And Miscanthus RhizosphereMYPDHLLPDYCDKPERLLRPDRRPLPQSNEIRIRVKRATARPEA*
Ga0066660_1073795423300006800SoilPYEKPERLLRPDRRPLPRASEIRLRVKRAMNRQGA*
Ga0079220_1030724623300006806Agricultural SoilMFPDYHLPYEKAERPLRPDRRQLPKDSEIRLRIKRALSKREA*
Ga0079220_1032409533300006806Agricultural SoilMFPDHHLPYEKTERTLRPDRRPLPRANEIRLRVKRVESRVKA*
Ga0075424_10139272123300006904Populus RhizosphereMFTDHHLPYDKAERSLRPDRRPLPRESEIRLRIKRALSRREV*
Ga0075436_10106538823300006914Populus RhizosphereMFPDPHLPYEKPERLLRPDRRPLPRASEIRLRVKRAMTREGA*
Ga0079219_1014713733300006954Agricultural SoilMFSDPHLPNELERPLRVRPDRRPLPRANEIRLRIKRAVSRGEA*
Ga0102953_115852823300007775SoilMFPDPHFTVRPEGLPRPDRRPLPRAGEIRLRVKRTTNRERA*
Ga0105240_1001169243300009093Corn RhizosphereMFPDYHLPYRGERSLRPDRRPLPKDSEIRLRVKRALSKRGREG*
Ga0105240_1070915623300009093Corn RhizosphereMFADHHLPYDKPERTLRPDRRPLPRESEIRLRVKRARSRGES*
Ga0126374_1184661113300009792Tropical Forest SoilRPQLRGGRMFPDHHLPYKTERPLRPDRRPLPRSSEIRIRVKRTLHRGEV*
Ga0126380_1070998413300010043Tropical Forest SoilLLPHYSDKPERLLRPDRRPLPQSNEIRIRVKRAAARPEA*
Ga0126370_1019879423300010358Tropical Forest SoilMFPDHHLPYDRADRLPRPDRRPLPSANEIRLRVKRATTAKEA*
Ga0126370_1096857223300010358Tropical Forest SoilMFPDHHLPYKAERPLRPDRRPLPRSSEIRLRVKRTLHRGEV*
Ga0126372_1211778823300010360Tropical Forest SoilMFPDHHLPYDRPDRLPRPDRRPLPQSNEIRIRVKRAAARPEA*
Ga0126378_1002437353300010361Tropical Forest SoilMFPDRHLPYDKPEGLLRPDRRPLPRANEIRLRIKRATSPKEA*
Ga0134128_1001081743300010373Terrestrial SoilMFPDHHLPYRNTGRELRPDRRPLPRAGEIRIRVKRTLHRGEA*
Ga0126381_10004766223300010376Tropical Forest SoilMFPDRHLPYDKPEGLLRPDRRPLPRANEIRLRIKRATSTKEA*
Ga0134126_1063891133300010396Terrestrial SoilMFPDYHLPYEKAERPLRPDRRLLPKDSEIRLRIKRALSKREA*
Ga0134126_1163164423300010396Terrestrial SoilMYPDYHLPSKAQTTLRPDRRPLPRAGEIRLRVKRTLTRDLNREEAA*
Ga0126383_1242577813300010398Tropical Forest SoilMFPDHLLPDYCDKPERPLRPDRRPLPQSNEIRIRVKRATTRPEA*
Ga0137364_1059754623300012198Vadose Zone SoilMFSDPHLPNELERSLRLRPDRRPLPRAHEIRLRIKRAATRGEA*
Ga0137382_1052053823300012200Vadose Zone SoilMFSDPHLPNELERSLRLRPDRRPLPRAHEIRLRIKRAVARGEA*
Ga0137365_1102827323300012201Vadose Zone SoilMFPDHHLPYDKAERSLRPDRRPLPKDSEIRMRIKRALSKREE*
Ga0137381_1055909023300012207Vadose Zone SoilMFPDYHLPYNLAERSLRPDRRPLPKDSEIRIRLKRALSKREA*
Ga0137377_1035095833300012211Vadose Zone SoilMLPNHHLPYEKPERLLRPDRRPLPRASEIRLRVKRAMNRQGA*
Ga0137387_1049270823300012349Vadose Zone SoilMYPAHLLPDYCDKPERLLRPDRRPLPQSNEIRIRVKRAAARPEA*
Ga0164299_1029990923300012958SoilMFPDYHLPYNRAERSLRPDRRPLPKDSEIRIRLKRALSKREA*
Ga0157369_1011932853300013105Corn RhizosphereMFPDYHLPYKGERSLRPDRRPLPKDSEIRLRVKRALSKRGREG*
Ga0120158_1002919943300013772PermafrostMFTDHHLPFDKPERMLRTDRRPLPRASEIRLRVKRAMGRQGA*
Ga0167642_100350333300015160Glacier Forefield SoilMFPDYHLPYKKAERSLRPDRRPLPKDSEIRLRVKRALSKREI*
Ga0134072_1021728823300015357Grasslands SoilMFPDHHLPYDKAERTLRPDRRPLPKDSEIRMRIKRALSKRAA*
Ga0132258_1071588823300015371Arabidopsis RhizosphereMYPDHLLPDYHDKPERLLRPDRRPLPQSNEIRIRVKRAMARPEA*
Ga0187785_1041266023300017947Tropical PeatlandMYPEHLLPHYSGKPERLLRPDRRPLPQSNEIRIRVKRAAARPEA
Ga0187778_1046818823300017961Tropical PeatlandMFPDHHLPYDRRESLLRPDRRPLPRATEIRIRVKRTRRCGEA
Ga0066655_1018347023300018431Grasslands SoilMFPDHHLPYDKAERTLRPDRRPLPKDSEIRMRIKRALSKREA
Ga0066667_1015625923300018433Grasslands SoilMFTDHHLPYAKLEPSLRPDRRPLPRASEIRLRVKRAVSRGEV
Ga0066662_1029551523300018468Grasslands SoilMFPDHHLPYDKAERTLRPDRRPLPKDSEIRMRIKRALRKREA
Ga0193751_100230433300019888SoilMFTDHHLPFDKPERMLRTDRRPLPRASEIRLRVKRAMSRQGA
Ga0193751_100381043300019888SoilMFPDHHLPYKTERSLRPDRRPLPRASEIRLRVKRAESRKEA
Ga0126371_1029222133300021560Tropical Forest SoilMFPDRHLPYDKPEGLLRPDRRPLPRANEIRLRIKRATSTKEA
Ga0126371_1122135723300021560Tropical Forest SoilMFPDHHLYKTERTLRPDRRPLPRSGEIRIRVKRTLHRGEV
Ga0224712_1027340523300022467Corn, Switchgrass And Miscanthus RhizosphereMFPDYHLPYKGERSLRPDRRPLPKDSEIRLRVKRALSKRGREG
Ga0207707_1047860623300025912Corn RhizosphereMFPDYHLPYRGERSLRPDRRPLPKDSEIRLRVKRALSKRGREG
Ga0207695_1045207523300025913Corn RhizosphereMFADHHLPYDKPERTLRPDRRPLPRESEIRLRVKRARSRGES
Ga0207671_1082719123300025914Corn RhizosphereMFPDYHLPYKGERSLRPDRRPLPKDSEIRLRVKRALSKRGLEG
Ga0207660_1163744223300025917Corn RhizosphereMFPDYHLPYKGERSLRPDRRPLPKDSEIRLRVKRALSK
Ga0207700_1060299623300025928Corn, Switchgrass And Miscanthus RhizosphereMFPDYHLPYEKAERPLRPDRRVLPKDSEIRLRIKRALSKREA
Ga0207700_1067173423300025928Corn, Switchgrass And Miscanthus RhizosphereRPQLKGVAMFPDHLLPDYCDKPERLLRPDRRPLPQSNEIRIRVKRAATRPEA
Ga0209153_116871223300026312SoilMLPDHHLPYDKAERTLRPDRRPLPKDSEIRMRIKRALSKREA
Ga0209152_1032384523300026325SoilMFPDHHLPYSTGRELRPDRRPLPRANEIKLRVKRALHRGEV
Ga0209577_1010756923300026552SoilMFPDHHLPYEKPERLLRPDRRPLPRASEIRLRVKRTMNRQGA
Ga0209810_1001115163300027773Surface SoilMFPAPHLPYETGRRLRPDRRPLPRAGEIRIRVKRTLHREED
Ga0209166_1001276743300027857Surface SoilMFPDHHLPYKVERPLRPDRRPLPQSNEIRLRIKRALDKREA
Ga0209579_1025299423300027869Surface SoilMLPDHHLPYTPDRTLRPDRRPLPRANEIRLRIKRKLTRRGA
Ga0170824_10427155023300031231Forest SoilGEAMFPDHHLPYDKQERPLRPDRRPLPLANEIRLRVKRAASRREV
Ga0307418_100128423300031341Salt MarshMFPDPHITTRPDRLPRPDRRPLPPATEVRLRARRPTGRQVA
Ga0308175_100000648203300031938SoilMSPDQHLPFDKPERTLRPDRRPLPRASEIRLRVKRTLHRGEA
Ga0308175_10012012343300031938SoilMFPDHHLPYSTARELRPDRRPLPRAGEIKLRVKRALHRGEA
Ga0308174_1011489243300031939SoilMSPDQHLPFDKPERTLRPDRRPLPRASENRLRVKRTQHRGEA
Ga0308174_1116670123300031939SoilMFPDHHLPYRNTGRELRPDRRPLPRAGEIRIRVKRTLHRGEA
Ga0308176_1001136153300031996SoilMFPDHHLPYSTARELRPDRRPLPRAGEIKLRVKRALQRGEA
Ga0307471_10082136823300032180Hardwood Forest SoilMFPDYHLSYKFESSLRPDRRPLPQANEIRMRVKRILNKRAA
Ga0335085_10004481133300032770SoilMFPDHHLPYDKRESLLRPDRRPLPRATEIRIRVKRTRRCGEA
Ga0335079_1210383323300032783SoilMFTDQHLPYDTPERYLRPDRRPLPRASEIRLRVRRLLAPKEA

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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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