Metagenome / Metatranscriptome Family F072611

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F072611
Family Type	Metagenome / Metatranscriptome
Number of Sequences	121
Average Sequence Length	48 residues
Representative Sequence	MRTTLIIACAFVVFAAGAQAQDASNPCRQIKDDGKRLKCYDRLDR
Number of Associated Samples	95
Number of Associated Scaffolds	121

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	5.00 %
% of genes near scaffold ends (potentially truncated)	99.17 %
% of genes from short scaffolds (< 2000 bps)	91.74 %
Associated GOLD sequencing projects	90
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.32

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (83.471 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (33.884 % of family members)
Environment Ontology (ENVO)	Unclassified (39.669 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (60.331 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	Yes	Secondary Structure distribution:	α-helix: 58.90% β-sheet: 0.00% Coil/Unstructured: 41.10%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.32
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.32
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 121 Family Scaffolds
PF01636	APH	14.05
PF03781	FGE-sulfatase	10.74
PF01575	MaoC_dehydratas	7.44
PF03401	TctC	5.79
PF01925	TauE	4.96
PF13452	MaoC_dehydrat_N	3.31
PF13618	Gluconate_2-dh3	2.48
PF01734	Patatin	1.65
PF00155	Aminotran_1_2	1.65
PF11319	VasI	1.65
PF01479	S4	1.65
PF08857	ParBc_2	1.65
PF10056	DUF2293	1.65
PF00497	SBP_bac_3	0.83
PF04392	ABC_sub_bind	0.83
PF12680	SnoaL_2	0.83
PF03572	Peptidase_S41	0.83
PF09084	NMT1	0.83
PF01554	MatE	0.83
PF01381	HTH_3	0.83
PF03734	YkuD	0.83

COG ID	Name	Functional Category	% Frequency in 121 Family Scaffolds
COG1262	Formylglycine-generating enzyme, required for sulfatase activity, contains SUMF1/FGE domain	Posttranslational modification, protein turnover, chaperones [O]	10.74
COG3181	Tripartite-type tricarboxylate transporter, extracytoplasmic receptor component TctC	Energy production and conversion [C]	5.79
COG0730	Sulfite exporter TauE/SafE/YfcA and related permeases, UPF0721 family	Inorganic ion transport and metabolism [P]	4.96
COG1752	Predicted acylesterase/phospholipase RssA, containd patatin domain	General function prediction only [R]	1.65
COG3621	Patatin-like phospholipase/acyl hydrolase, includes sporulation protein CotR	General function prediction only [R]	1.65
COG4318	Uncharacterized conserved protein	Function unknown [S]	1.65
COG4667	Predicted phospholipase, patatin/cPLA2 family	Lipid transport and metabolism [I]	1.65
COG0715	ABC-type nitrate/sulfonate/bicarbonate transport system, periplasmic component	Inorganic ion transport and metabolism [P]	0.83
COG0793	C-terminal processing protease CtpA/Prc, contains a PDZ domain	Posttranslational modification, protein turnover, chaperones [O]	0.83
COG1376	Lipoprotein-anchoring transpeptidase ErfK/SrfK	Cell wall/membrane/envelope biogenesis [M]	0.83
COG2984	ABC-type uncharacterized transport system, periplasmic component	General function prediction only [R]	0.83
COG3034	Murein L,D-transpeptidase YafK	Cell wall/membrane/envelope biogenesis [M]	0.83
COG4521	ABC-type taurine transport system, periplasmic component	Inorganic ion transport and metabolism [P]	0.83

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	83.47 %
Unclassified	root	N/A	16.53 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	83.47 %
Unclassified	root	N/A	16.53 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	83.47 %
Unclassified	root	N/A	16.53 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	78.51 %
Unclassified	root	N/A	16.53 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	52.89 %
Unclassified	root	N/A	16.53 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.83 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	16.53 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	14.88 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	8.26 %
Alteromonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Alteromonadales	0.83 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	16.53 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	6.61 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	6.61 %
Alphaproteobacteria bacterium 13_2_20CM_2_64_7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	1.65 %
Xanthobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae	0.83 %
Comamonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae	0.83 %
unclassified Hyphomicrobiales	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales	0.83 %
Alteromonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Alteromonadales	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	16.53 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	6.61 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	5.79 %
Alphaproteobacteria bacterium 13_2_20CM_2_64_7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	1.65 %
Xanthobacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Xanthobacter	0.83 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	0.83 %
Polaromonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Polaromonas	0.83 %
Alteromonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Alteromonadales	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	16.53 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	6.61 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	5.79 %
Alphaproteobacteria bacterium 13_2_20CM_2_64_7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	1.65 %
Xanthobacter aminoxidans	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Xanthobacter → Xanthobacter aminoxidans	0.83 %
unclassified Polaromonas	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Polaromonas → unclassified Polaromonas	0.83 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	0.83 %
Alteromonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Alteromonadales	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	16.53 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	6.61 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	5.79 %
Alphaproteobacteria bacterium 13_2_20CM_2_64_7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	1.65 %
Polaromonas sp. CG9_12	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Polaromonas → unclassified Polaromonas → Polaromonas sp. CG9_12	0.83 %
Xanthobacter aminoxidans	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Xanthobacter → Xanthobacter aminoxidans	0.83 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	0.83 %
Alteromonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Alteromonadales	0.83 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000956\|JGI10216J12902_100921034	All Organisms → cellular organisms → Bacteria → Proteobacteria	709	Open in IMG/M
3300000956\|JGI10216J12902_109258474	All Organisms → cellular organisms → Bacteria → Proteobacteria	857	Open in IMG/M
3300004152\|Ga0062386_100674928	All Organisms → cellular organisms → Bacteria → Proteobacteria	847	Open in IMG/M
3300004268\|Ga0066398_10159332	All Organisms → cellular organisms → Bacteria → Proteobacteria	572	Open in IMG/M
3300005178\|Ga0066688_10429393	All Organisms → cellular organisms → Bacteria → Proteobacteria	856	Open in IMG/M
3300005180\|Ga0066685_10120192	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1769	Open in IMG/M
3300005332\|Ga0066388_100428855	All Organisms → cellular organisms → Bacteria → Proteobacteria	1965	Open in IMG/M
3300005332\|Ga0066388_106971186	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Alteromonadales	569	Open in IMG/M
3300005363\|Ga0008090_10143975	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	520	Open in IMG/M
3300005363\|Ga0008090_10205873	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	581	Open in IMG/M
3300005436\|Ga0070713_101689608	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	614	Open in IMG/M
3300005558\|Ga0066698_10380069	All Organisms → cellular organisms → Bacteria → Proteobacteria	973	Open in IMG/M
3300005713\|Ga0066905_100912019	All Organisms → cellular organisms → Bacteria → Proteobacteria	770	Open in IMG/M
3300005764\|Ga0066903_106795584	Not Available	594	Open in IMG/M
3300005764\|Ga0066903_108420955	All Organisms → cellular organisms → Bacteria → Proteobacteria	526	Open in IMG/M
3300006046\|Ga0066652_100242214	All Organisms → cellular organisms → Bacteria → Proteobacteria	1575	Open in IMG/M
3300006050\|Ga0075028_100335772	All Organisms → cellular organisms → Bacteria → Proteobacteria	850	Open in IMG/M
3300006175\|Ga0070712_100217864	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1509	Open in IMG/M
3300009143\|Ga0099792_10582598	Not Available	711	Open in IMG/M
3300009147\|Ga0114129_10017149	All Organisms → cellular organisms → Bacteria → Proteobacteria	10313	Open in IMG/M
3300009156\|Ga0111538_10471844	All Organisms → cellular organisms → Bacteria	1591	Open in IMG/M
3300009156\|Ga0111538_13431964	All Organisms → cellular organisms → Bacteria → Proteobacteria	550	Open in IMG/M
3300010047\|Ga0126382_10253968	All Organisms → cellular organisms → Bacteria	1290	Open in IMG/M
3300010047\|Ga0126382_11042028	All Organisms → cellular organisms → Bacteria	720	Open in IMG/M
3300010047\|Ga0126382_11467164	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	626	Open in IMG/M
3300010048\|Ga0126373_11586459	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	719	Open in IMG/M
3300010358\|Ga0126370_10577195	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	966	Open in IMG/M
3300010359\|Ga0126376_10858537	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Polaromonas → unclassified Polaromonas → Polaromonas sp. CG9_12	893	Open in IMG/M
3300010360\|Ga0126372_10101385	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	2166	Open in IMG/M
3300010361\|Ga0126378_11458104	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	776	Open in IMG/M
3300010361\|Ga0126378_11811284	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	694	Open in IMG/M
3300010366\|Ga0126379_10670135	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1129	Open in IMG/M
3300010366\|Ga0126379_13030990	Not Available	562	Open in IMG/M
3300010376\|Ga0126381_105059468	Not Available	505	Open in IMG/M
3300010376\|Ga0126381_105151096	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	500	Open in IMG/M
3300010398\|Ga0126383_10738541	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	1064	Open in IMG/M
3300010398\|Ga0126383_12137895	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	646	Open in IMG/M
3300010398\|Ga0126383_13530948	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	511	Open in IMG/M
3300012202\|Ga0137363_10347616	All Organisms → cellular organisms → Bacteria → Proteobacteria	1227	Open in IMG/M
3300012210\|Ga0137378_10063134	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3350	Open in IMG/M
3300012353\|Ga0137367_11209413	All Organisms → cellular organisms → Bacteria → Proteobacteria	505	Open in IMG/M
3300012358\|Ga0137368_10380638	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	931	Open in IMG/M
3300012360\|Ga0137375_10811075	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	752	Open in IMG/M
3300012532\|Ga0137373_11068217	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	580	Open in IMG/M
3300012955\|Ga0164298_10826738	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	666	Open in IMG/M
3300012971\|Ga0126369_11045106	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	905	Open in IMG/M
3300012971\|Ga0126369_11786143	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	704	Open in IMG/M
3300012984\|Ga0164309_11118550	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	656	Open in IMG/M
3300012985\|Ga0164308_10183667	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1578	Open in IMG/M
3300012989\|Ga0164305_11009496	All Organisms → cellular organisms → Bacteria → Proteobacteria	708	Open in IMG/M
3300015372\|Ga0132256_102345675	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	637	Open in IMG/M
3300016270\|Ga0182036_10572052	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	903	Open in IMG/M
3300016319\|Ga0182033_11660162	Not Available	578	Open in IMG/M
3300016319\|Ga0182033_12049950	Not Available	521	Open in IMG/M
3300016341\|Ga0182035_10794538	Not Available	830	Open in IMG/M
3300016341\|Ga0182035_11976132	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	530	Open in IMG/M
3300016341\|Ga0182035_12180133	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	502	Open in IMG/M
3300016357\|Ga0182032_11238673	Not Available	643	Open in IMG/M
3300016371\|Ga0182034_10030852	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	3345	Open in IMG/M
3300016371\|Ga0182034_10968546	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	734	Open in IMG/M
3300016387\|Ga0182040_11876253	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	514	Open in IMG/M
3300020579\|Ga0210407_11477306	All Organisms → cellular organisms → Bacteria → Proteobacteria	502	Open in IMG/M
3300020581\|Ga0210399_10392611	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1157	Open in IMG/M
3300020583\|Ga0210401_11014425	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	689	Open in IMG/M
3300021168\|Ga0210406_10258932	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1425	Open in IMG/M
3300021168\|Ga0210406_10527579	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	930	Open in IMG/M
3300021168\|Ga0210406_11161500	All Organisms → cellular organisms → Bacteria → Proteobacteria	564	Open in IMG/M
3300021171\|Ga0210405_10449656	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1013	Open in IMG/M
3300021178\|Ga0210408_10894844	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Xanthobacter → Xanthobacter aminoxidans	691	Open in IMG/M
3300021404\|Ga0210389_11419403	Not Available	529	Open in IMG/M
3300021560\|Ga0126371_11309661	All Organisms → cellular organisms → Bacteria → Proteobacteria	858	Open in IMG/M
3300021560\|Ga0126371_12519229	Not Available	623	Open in IMG/M
3300026494\|Ga0257159_1082522	All Organisms → cellular organisms → Bacteria → Proteobacteria	558	Open in IMG/M
3300026552\|Ga0209577_10305530	All Organisms → cellular organisms → Bacteria	1186	Open in IMG/M
3300027654\|Ga0209799_1160780	Not Available	511	Open in IMG/M
3300027862\|Ga0209701_10367300	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	810	Open in IMG/M
3300027874\|Ga0209465_10278755	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	837	Open in IMG/M
3300028828\|Ga0307312_10501130	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	801	Open in IMG/M
3300028878\|Ga0307278_10335040	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	667	Open in IMG/M
3300028881\|Ga0307277_10539380	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	524	Open in IMG/M
3300031543\|Ga0318516_10018743	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3499	Open in IMG/M
3300031543\|Ga0318516_10367165	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	830	Open in IMG/M
3300031545\|Ga0318541_10109823	Not Available	1488	Open in IMG/M
3300031561\|Ga0318528_10449506	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	692	Open in IMG/M
3300031561\|Ga0318528_10672061	All Organisms → cellular organisms → Bacteria → Proteobacteria	555	Open in IMG/M
3300031564\|Ga0318573_10010323	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3913	Open in IMG/M
3300031640\|Ga0318555_10104809	Not Available	1492	Open in IMG/M
3300031640\|Ga0318555_10328214	All Organisms → cellular organisms → Bacteria → Proteobacteria	828	Open in IMG/M
3300031668\|Ga0318542_10461439	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	659	Open in IMG/M
3300031719\|Ga0306917_10050612	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2793	Open in IMG/M
3300031720\|Ga0307469_12540700	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	501	Open in IMG/M
3300031736\|Ga0318501_10287483	All Organisms → cellular organisms → Bacteria → Proteobacteria	876	Open in IMG/M
3300031744\|Ga0306918_10846787	Not Available	713	Open in IMG/M
3300031768\|Ga0318509_10334104	Not Available	848	Open in IMG/M
3300031770\|Ga0318521_10073092	All Organisms → cellular organisms → Bacteria → Proteobacteria	1832	Open in IMG/M
3300031777\|Ga0318543_10066114	All Organisms → cellular organisms → Bacteria	1506	Open in IMG/M
3300031781\|Ga0318547_10017181	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3490	Open in IMG/M
3300031792\|Ga0318529_10243529	All Organisms → cellular organisms → Bacteria → Proteobacteria	836	Open in IMG/M
3300031794\|Ga0318503_10232284	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	599	Open in IMG/M
3300031831\|Ga0318564_10217909	All Organisms → cellular organisms → Bacteria → Proteobacteria	848	Open in IMG/M
3300031832\|Ga0318499_10095767	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1145	Open in IMG/M
3300031846\|Ga0318512_10073492	Not Available	1569	Open in IMG/M
3300031860\|Ga0318495_10216586	All Organisms → cellular organisms → Bacteria	860	Open in IMG/M
3300031893\|Ga0318536_10246417	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	908	Open in IMG/M
3300031894\|Ga0318522_10081361	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1183	Open in IMG/M
3300031896\|Ga0318551_10180589	Not Available	1162	Open in IMG/M
3300031912\|Ga0306921_10376633	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1658	Open in IMG/M
3300031912\|Ga0306921_11555848	All Organisms → cellular organisms → Bacteria → Proteobacteria	720	Open in IMG/M
3300031941\|Ga0310912_10191901	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1559	Open in IMG/M
3300031959\|Ga0318530_10225588	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	771	Open in IMG/M
3300031981\|Ga0318531_10173850	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	968	Open in IMG/M
3300032001\|Ga0306922_10225513	Not Available	2012	Open in IMG/M
3300032001\|Ga0306922_10542327	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1237	Open in IMG/M
3300032035\|Ga0310911_10142682	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1343	Open in IMG/M
3300032060\|Ga0318505_10146281	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1093	Open in IMG/M
3300032060\|Ga0318505_10632705	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	502	Open in IMG/M
3300032063\|Ga0318504_10211084	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	908	Open in IMG/M
3300032205\|Ga0307472_100631957	All Organisms → cellular organisms → Bacteria → Proteobacteria	951	Open in IMG/M
3300032261\|Ga0306920_100501886	Not Available	1800	Open in IMG/M
3300033290\|Ga0318519_10248046	All Organisms → cellular organisms → Bacteria → Proteobacteria	1029	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	96.69%
Host-Associated	Host-Associated	3.31%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	95.04%
Plants	Host-Associated → Plants	3.31%
Aquatic	Environmental → Aquatic	1.65%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	95.04%
Rhizosphere	Host-Associated → Plants → Rhizosphere	3.31%
Freshwater	Environmental → Aquatic → Freshwater	0.83%
Sediment	Environmental → Aquatic → Sediment	0.83%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	86.78%
Loam	Environmental → Terrestrial → Soil → Loam	8.26%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	2.48%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	0.83%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.83%
Soil	Host-Associated → Plants → Rhizosphere → Soil	0.83%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	49.59%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	29.75%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	6.61%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	5.79%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	2.48%
Tropical Rainforest	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest	1.65%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	1.65%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	0.83%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.83%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	0.83%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	33.88%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	16.53%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	14.05%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	6.61%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	6.61%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	5.79%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	5.79%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	2.48%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	1.65%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	1.65%
Tropical Rainforest Soil	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest → Tropical Rainforest Soil	1.65%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	0.83%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	0.83%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.83%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.83%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300004152	Coassembly of ECP12_OM1, ECP12_OM2, ECP12_OM3	Environmental	Open in IMG/M
3300004268	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 MoBio	Environmental	Open in IMG/M
3300005163	Soil and rhizosphere microbial communities from Laval, Canada - mgHMB	Environmental	Open in IMG/M
3300005178	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_137	Environmental	Open in IMG/M
3300005180	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_134	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005363	Tropical rainforest soil microbial communities from the Amazon Forest, Brazil, analyzing deforestation - Metatranscriptome F II A100 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental	Open in IMG/M
3300005558	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_147	Environmental	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006046	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_101	Environmental	Open in IMG/M
3300006050	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2014	Environmental	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300009143	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2	Environmental	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012210	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_60_16 metaG	Environmental	Open in IMG/M
3300012353	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_80_16 metaG	Environmental	Open in IMG/M
3300012358	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_100_16 metaG	Environmental	Open in IMG/M
3300012360	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_113_16 metaG	Environmental	Open in IMG/M
3300012532	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_80_16 metaG	Environmental	Open in IMG/M
3300012955	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_216_MG	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300012984	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_247_MG	Environmental	Open in IMG/M
3300012985	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_246_MG	Environmental	Open in IMG/M
3300012989	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_237_MG	Environmental	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300016270	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080	Environmental	Open in IMG/M
3300016319	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H	Environmental	Open in IMG/M
3300016341	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170	Environmental	Open in IMG/M
3300016357	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000	Environmental	Open in IMG/M
3300016371	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172	Environmental	Open in IMG/M
3300016387	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176	Environmental	Open in IMG/M
3300020579	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M	Environmental	Open in IMG/M
3300020581	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M	Environmental	Open in IMG/M
3300020583	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-M	Environmental	Open in IMG/M
3300021168	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-M	Environmental	Open in IMG/M
3300021171	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-M	Environmental	Open in IMG/M
3300021178	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-M	Environmental	Open in IMG/M
3300021404	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-O	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300026494	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NL-07-A	Environmental	Open in IMG/M
3300026552	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109 (SPAdes)	Environmental	Open in IMG/M
3300027654	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 MoBio (SPAdes)	Environmental	Open in IMG/M
3300027862	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027874	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio (SPAdes)	Environmental	Open in IMG/M
3300028828	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_202	Environmental	Open in IMG/M
3300028878	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_117	Environmental	Open in IMG/M
3300028881	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_116	Environmental	Open in IMG/M
3300031543	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f20	Environmental	Open in IMG/M
3300031545	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f26	Environmental	Open in IMG/M
3300031561	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f26	Environmental	Open in IMG/M
3300031564	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f21	Environmental	Open in IMG/M
3300031640	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f23	Environmental	Open in IMG/M
3300031668	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f23	Environmental	Open in IMG/M
3300031719	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2)	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300031736	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f21	Environmental	Open in IMG/M
3300031744	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)	Environmental	Open in IMG/M
3300031768	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f22	Environmental	Open in IMG/M
3300031770	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f17	Environmental	Open in IMG/M
3300031777	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f24	Environmental	Open in IMG/M
3300031781	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f20	Environmental	Open in IMG/M
3300031792	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f23	Environmental	Open in IMG/M
3300031794	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f23	Environmental	Open in IMG/M
3300031831	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f20	Environmental	Open in IMG/M
3300031832	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f25	Environmental	Open in IMG/M
3300031846	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f19	Environmental	Open in IMG/M
3300031860	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f25	Environmental	Open in IMG/M
3300031893	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f28	Environmental	Open in IMG/M
3300031894	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f18	Environmental	Open in IMG/M
3300031896	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f19	Environmental	Open in IMG/M
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental	Open in IMG/M
3300031941	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX080	Environmental	Open in IMG/M
3300031959	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f24	Environmental	Open in IMG/M
3300031981	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f25	Environmental	Open in IMG/M
3300032001	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)	Environmental	Open in IMG/M
3300032035	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF170	Environmental	Open in IMG/M
3300032060	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f18	Environmental	Open in IMG/M
3300032063	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f17	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300033290	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f15	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI10216J12902_1009210342	3300000956	Soil	MRKILIIACASVTFAAGAQAQDAVKACRVLKDDAERLKCYDRLDT
JGI10216J12902_1092584741	3300000956	Soil	MRAILIIACASVAFTAGAQAQDALRACRALKDDAERLKCYD
Ga0062386_1006749282	3300004152	Bog Forest Soil	MRSIPAILMIACASIAFGTGAHAQEALKLCRQIKDDAERLKCYDGLDTSSST
Ga0066398_101593321	3300004268	Tropical Forest Soil	MRTILTIACASVVFAAGAQAQDALKSCRQIKDDGRRLKCYDGLD
Ga0066823_101553142	3300005163	Soil	MRAIPTILMIACASVAFGAGAHAQEALKLCRQIKDDAERLKCYDGLDTSSSTAAPTQ
Ga0066688_104293932	3300005178	Soil	MRTTLIIIACITVLFAAGAPAQDASTPCRQIKDDGRRLKCYDRLDRSTSNPQERSAPRRGGGDTGWI
Ga0066685_101201921	3300005180	Soil	MRAIFIIACAGLTFAAGAQAQDAVRACRQLKDDAERLKCYDRLDTSASNAPRGQ
Ga0066388_1004288551	3300005332	Tropical Forest Soil	MRITLIIACATVLFAAGAQAQDASAPCRQIKDDGKRLKCYDRLDRSSSNPQERSA
Ga0066388_1069711862	3300005332	Tropical Forest Soil	MRAILTIACASVAFAAGAQAQDALRSCRQIKDDGERLKCYDR
Ga0008090_101439752	3300005363	Tropical Rainforest Soil	MRVIVTLACVSVAFAAGAQAQDALKSCRQIRDDGERLKCYD
Ga0008090_102058732	3300005363	Tropical Rainforest Soil	MRTTLIIACAIAVFAGGAKAQDASCRQIKDDGKRLKCYDRLDRSSSNARERPGQSRRGDD
Ga0070713_1016896081	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	MRLPLIIACAGLLLATGAHAQEALKLCRQIKDDGERLKCYDGIDVSASN
Ga0066698_103800693	3300005558	Soil	MRAIFIIACAGLTFAAGAQAQDAVRACRQLKDDAERLKCYDRLDTSASNAPRGQRESKAD
Ga0066905_1009120192	3300005713	Tropical Forest Soil	MRAILIIACASVAFAAGAQAQDALRSCRQIKDDGERLKCYD
Ga0066903_1067955842	3300005764	Tropical Forest Soil	MRTTPIIACAFVVFAAGAQAQDASNPCRQIKDDGKRLKCY
Ga0066903_1084209552	3300005764	Tropical Forest Soil	MRTTLIIACAFVVFAAGAQAQDASNPCRQIKDDGKRLKCYDRLDRPSANA
Ga0066652_1002422144	3300006046	Soil	MRAIFIIACAGLTFAAGAQAQDAVRACRQLKDDAERLKCYDRLDTSASNA
Ga0075028_1003357722	3300006050	Watersheds	MRATLITACAGLLFATGAQAQDAVKACRQLKDEAERLKCYDRLDTSASNAPRGQR
Ga0070712_1002178641	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	MRTSLIIACAIVAFAAGAQAQDAFTPCRQIKDEGKRLKCYDRLDRSSSGAQERSAQR
Ga0099792_105825981	3300009143	Vadose Zone Soil	MRATLITACAGLLFATGAQAQDAVKACRQLKDEAER
Ga0114129_100171491	3300009147	Populus Rhizosphere	MRTVIIAFASIAFAAGAHAQSALSACRAIKDDGERLKCYDRLDTSFSNVPAR
Ga0111538_104718444	3300009156	Populus Rhizosphere	MRVPLIIACAGLLLATGAHAQEALKLCRQIKDDGERLKCYDG
Ga0111538_134319642	3300009156	Populus Rhizosphere	MRVPLIIACAGLLLATGAHAQEALKLCRQIKDDGERLKCYD
Ga0126382_102539681	3300010047	Tropical Forest Soil	MRAILIIACASVLFAAGAQAQDALKSCRQIKDDGERLK
Ga0126382_110420281	3300010047	Tropical Forest Soil	MRTILTIACASVVFAAGAQAQDALRSCRQIKDDGERLK
Ga0126382_114671641	3300010047	Tropical Forest Soil	MRTTRIIACAFAVFAAGAQAQDASNPCRQIKDDGKRLKCYDRLDRPSANARERPGQSRPG
Ga0126373_115864592	3300010048	Tropical Forest Soil	MRTTLIIACAFVVFAAGAQAQDASNPCRQIKDDGKRLKRYDRLDRTSSNARERLGQS
Ga0126370_105771951	3300010358	Tropical Forest Soil	MRTTRIIACAFAVFAAGAQAQDASNPCRQIKDDGKRLKCYDR
Ga0126376_108585373	3300010359	Tropical Forest Soil	LDQPLHKKMRAILITAYAGLLFATGAQAQDALRACRQLKDDAERLKCYDRLDTSAS
Ga0126372_101013851	3300010360	Tropical Forest Soil	MRAILIIACASVLFAAGAQAQDALKSCRQIKDDGERLKCYDGL
Ga0126378_114581042	3300010361	Tropical Forest Soil	MRTTPIIACAFVVFAAGAQAQDASNPCRQIKDDGKRLKCYDRLDRPSANARE
Ga0126378_118112843	3300010361	Tropical Forest Soil	MRSTLIIACAIVVFAAGAKAQDALKPCRQIKDDGKRLKCYDRLDRPSANARERPGQS
Ga0126379_106701352	3300010366	Tropical Forest Soil	MRTTLIIACAFVVFAAGAQAQDAANPCRQIKDDGKRLKCYDRLDRP
Ga0126379_130309901	3300010366	Tropical Forest Soil	MRTTPIIACAFVVFAAGAQAQDASNPCRQIKDDGKRLK
Ga0126381_1050594681	3300010376	Tropical Forest Soil	MRTTLIIACAFVVFAAGAQAQDAANPCGQIKDDGKRLKCYGRLDRPSANARERPGQSRPG
Ga0126381_1051510961	3300010376	Tropical Forest Soil	MRTTPIIACAFVVFAAGAQAQDASNPCRQIKDDGKRLKCYDR
Ga0126383_107385413	3300010398	Tropical Forest Soil	MRTTLIIACAMLVFAGAAKAQDASCRQIKDDGKRLKCYDRLDRSSSNARERPGQS
Ga0126383_121378952	3300010398	Tropical Forest Soil	MRTTPIIACAFVVFAAGAQAQDASNPCRQIKDDGKRLKCYDRLDRPSANARER
Ga0126383_135309482	3300010398	Tropical Forest Soil	MRTTRIIACAFAVFAAGAQAQDASNPCRQIKDDGKRLKCYDRLDRPSANARERPGQ
Ga0137363_103476163	3300012202	Vadose Zone Soil	MRAILTIACASVLFAAGAQAQDALKSCRQIKDDGE
Ga0137378_100631345	3300012210	Vadose Zone Soil	MRTTLIIACAFVVFAAGAQAQDALNPCRQIKDEGKRL
Ga0137367_112094132	3300012353	Vadose Zone Soil	MRAILTIACASVVFAAGAQAQDTLKSCRQIKDDGERLKCYDGLDTSSAN
Ga0137368_103806381	3300012358	Vadose Zone Soil	MRSIVIIAFASIAFATDAHAQGALSACRAIKDDGERLKCYDRLDT
Ga0137375_108110752	3300012360	Vadose Zone Soil	MRTTLIIACAIAVFAVGAQAQDALNPCRQIKDDGKRLKCYDRLDRSSSNARERPRQ
Ga0137373_110682172	3300012532	Vadose Zone Soil	MRSIVIIAFASIAFATDAHAQGALSACRAIKDDGERLKCYDRLDTSFSDVP
Ga0164298_108267381	3300012955	Soil	MRTSLIITCAIVAFAAGAQAQDAFTPCRQIKDEGKRLKCYDRLDRSSSGAQERSAQRQGGGDTTGRS
Ga0126369_110451062	3300012971	Tropical Forest Soil	MRTTRIIACAFAVFAAGAQAQDASNPCRQIKDDGKRLKCYDRLDRPSANARERPG
Ga0126369_117861431	3300012971	Tropical Forest Soil	MRTTLIIACAFVVFAAGAQAQDAANPCRQIKDDGKRLKCYDRLDRPSANARERPGQSRP
Ga0164309_111185501	3300012984	Soil	MRTTLIIACAIVVFAAGAQAQDALKPCRQIKEDGKRLKCYDRLDRSSSGAQERSAQRQGGGDTGWIVN
Ga0164308_101836672	3300012985	Soil	MHTSLIIACAIVAFAAGAQAQDAFTPCRQIKDEGKRLKC
Ga0164305_110094961	3300012989	Soil	MIACASVAFGAGAHAQEALKLCRQLKDGAERLKCYDGLDTSSSTAA
Ga0132256_1023456751	3300015372	Arabidopsis Rhizosphere	MRTSLIIACAIVAFAAGAQAQDAFAPCRQIKDEGKRLKCYDRLDRSSSGAQERSAQRRGGGDTGWIV
Ga0182036_105720521	3300016270	Soil	MRTTLIIACAFVVFAAGAQAQDASNPCRQIKDDGKRLKCYDRLDRP
Ga0182033_116601621	3300016319	Soil	MRTRLIIACAIVVFAAGAKAQDALKPCRQIKDDGKRLKCYDHLDRS
Ga0182033_120499501	3300016319	Soil	MRAILTLACAGIVFATGARAQEALNSCRQIKDDAQRLKCYDGLATSP
Ga0182035_107945381	3300016341	Soil	MRSTLIIACAIVVFAAGAKAQDALKPCRQIKDDGKRLK
Ga0182035_119761321	3300016341	Soil	MRATLTLACAGLVFAAGAQAQDALNSCRQIKDDAQRLKCYDGIATSPS
Ga0182035_121801332	3300016341	Soil	MRTIVIVAFAGFVFAAGAQAQEGLNRCHQIKDDAERLKCYDA
Ga0182032_112386732	3300016357	Soil	MRAILTLACAGIVFTTGARAQEALNSCRQIKDDAQRLN
Ga0182034_100308521	3300016371	Soil	MRSTLIIVCAIVVFAAGAKAQDALKPCRQIKDDGKRLKCYDRLDR
Ga0182034_109685462	3300016371	Soil	MRTTLIIACAFVVFAAGAQAQDASNPCRQIKDDGKRLKCYDRLDRPSANARE
Ga0182040_118762532	3300016387	Soil	MRTTLIIACAFVVFAAGAQAQDASNPCRQIKDDGKRLKCYDRLDRPSANAR
Ga0210407_114773061	3300020579	Soil	MRATLITACAGLLFATGAQAQDAVKACRQLKDEAERLKCYDRLDTSASNAPR
Ga0210399_103926112	3300020581	Soil	MRSIPAILMIACASIAFGTGAHAQEALKLCRQIKDDAERLKCYDGLD
Ga0210401_110144252	3300020583	Soil	MRAISAILMVACASVAFGAGAHAQEALKLCRQIKDDA
Ga0210406_102589322	3300021168	Soil	MRAISAILMVACASVAFGAGAHAQEALKLCRQIKDDAERLKCYDG
Ga0210406_105275791	3300021168	Soil	MRSIPAILMIACASIAFGTGAHAQEALKLCRQIKDDAERLKCYDGLDTSS
Ga0210406_111615002	3300021168	Soil	MRATLITACAGLLFATGAQAQDAVKACRQLKDEAERL
Ga0210405_104496561	3300021171	Soil	MRAISAILMVACASVAFGAGAHAQEALKLCRQIKDDAE
Ga0210408_108948441	3300021178	Soil	MRAIPAILMIACASVPFGTGAHAQEALKLCRQLKDDAERLKCYDGLDTS
Ga0210389_114194032	3300021404	Soil	MRSIPAILMIACASIAFGTGAHAQEALKLCRQIKDD
Ga0126371_113096613	3300021560	Tropical Forest Soil	MRAILITAYAGLLFATGAQAQDALRACRQLKDDAERLKCYDRLDTSA
Ga0126371_125192292	3300021560	Tropical Forest Soil	MRTRLIIACTIVVFAAGAKAQDALKPCRQIKDDGKRLKCYDRLDRSSSSARE
Ga0257159_10825222	3300026494	Soil	MRATLITACAGLLFATGAQAQDAVKACRQLKDEAERLKCYDRLDTSAS
Ga0209577_103055303	3300026552	Soil	MRATLIIACAGLLLAAGAHAQEALKLCRQIKDDGERLKCYDGIDVSASNPARPP
Ga0209799_11607801	3300027654	Tropical Forest Soil	MRTTLIIACAFVVFAAGAQSQDAANPCRQIKDDGKRLKC
Ga0209701_103673001	3300027862	Vadose Zone Soil	MRAILTIACASVVFAAGAQAQEALKRCHQIKDDAERLKCYDRLDTSSSNA
Ga0209465_102787551	3300027874	Tropical Forest Soil	MRTTLIIACAFVVFAAGAQAQDAANPCRQIQDDGKRLKCYDRLDRP
Ga0307312_105011301	3300028828	Soil	MRTTLIIACAFVVFAAGAQAQDAQPCRQIKDDGKRLKCYDRVDRSSSNARERLGQSR
Ga0307278_103350402	3300028878	Soil	MRTTLIIARAILACAMVVFAAGSHAQDALKPCRQIKDDGKRLKCYDRLDRSSSNAQDRP
Ga0307277_105393801	3300028881	Soil	MRTTLIIARAILACAMVVFAAGSHAQDALKPCRQIKDDGKRLKCYDRLDRSSS
Ga0318516_100187436	3300031543	Soil	MRTTLIIACAFAVFAAGAQAQDASNPCRQIKDDGKRLKCYDRLDRPSANARERP
Ga0318516_103671653	3300031543	Soil	MRSTLIIACAIVVFAAGAKAQDALKPCRQIKDDGKRLKCYDSLDRS
Ga0318541_101098232	3300031545	Soil	MRTTLIIACAFVVFAAGAQAQDASNPCRQIKDDGKRLKCYDRLDRPSANARERP
Ga0318528_104495062	3300031561	Soil	MRSTLIIVCAIVVFAAGAKAQDALKPCRQIKDDGKRLKCYDSLDRSSSS
Ga0318528_106720611	3300031561	Soil	MRATLTIACASVLFAAGAQAQDALKSCRQIKDDGERLKCYDGLDTSANATG
Ga0318573_100103231	3300031564	Soil	MRTTLIIACAFVVFAAGAQAQDASNPCRQIKDDGKRLKCYDRLDRPSANARDRAAIRRGSSPTR
Ga0318555_101048091	3300031640	Soil	MRTTLIIACAFVVFAAGAQAQDASNPCRQIKDDGKRLKCYDRLDRPSANARER
Ga0318555_103282141	3300031640	Soil	MRAILTIACASVLFAAGAQAQDALKSCRQIKDDGERLKCYDGLDTSSANATGRPAE
Ga0318542_104614391	3300031668	Soil	MRSTLIIVCAIVVFAAGAKAQDALKPCRQIKDDGKRLKCYDRLDRS
Ga0306917_100506121	3300031719	Soil	MRTTLIIACAFVVFAAGAQAQDASNPCRQIKDDGKRLKCY
Ga0307469_125407001	3300031720	Hardwood Forest Soil	MRTSLIIACAIVAFAAGAQAQDAFTPCRQIKDEGKRLKCYDRLDRSSSNAQ
Ga0318501_102874832	3300031736	Soil	MRTILTIACASVVFAAGAQAQDALRSCRQIKDDGERLKCYDRLDIS
Ga0306918_108467872	3300031744	Soil	MRTRLIIACAIVVFAAGAKAQDALKPCRQIKDDGKR
Ga0318509_103341043	3300031768	Soil	MRTRLIIACAIVVFAAGAKAQDALKPCRQIKDDGKRLK
Ga0318521_100730921	3300031770	Soil	MRTRLIIACAIVVFAAGAKAQDALKPCRQIKDDGKRLKCYDRLDRSSSSARAG
Ga0318543_100661141	3300031777	Soil	MRSTLIIACAIVVFAAGAKAQDALKPCRQIKDDGKRLKCYDRLDRSSSS
Ga0318547_100171811	3300031781	Soil	MRTTLIIACAFAVFAAGAQAQDASNPCRQIKDDGKRLKCYDRLDRPSANARER
Ga0318529_102435292	3300031792	Soil	MRAILTIACASVLFAAGAQAQDALKSCRQIKDDGERLKCY
Ga0318503_102322841	3300031794	Soil	MRSTLIIACAIVVFAAGAKAQDALKPCRQIKDDGKRLKCYDSLDRSSSSVRERLGQSRLGGAT
Ga0318564_102179091	3300031831	Soil	MRATLTIACASVLFAAGAQAQDALKSCRQIKDDGERLKCYDGLDT
Ga0318499_100957671	3300031832	Soil	MRTTLIIACAFVVFAAGAQAQDASNPCRQIKDDGKRLKCYDRLDRPSAN
Ga0318512_100734923	3300031846	Soil	MRTTLIIACAFAVFAAGAQAQDASNPCRQIKDDGKRLKCYDRLDRP
Ga0318495_102165861	3300031860	Soil	MRAILTIACASVLFAAGAEAQDALKSCRQIKDDGERLKCYDGLDTSSANATGRPAE
Ga0318536_102464173	3300031893	Soil	MRSTLIIVCAIVVFAAGAKAQDALKPCRQIKDDGKRLKCYDRLDRSSSSARERLG
Ga0318522_100813611	3300031894	Soil	MRTTLIIACAFVVFAAGAQAQDASNPCRQIKDDGKRLKCYDRLDRPS
Ga0318551_101805893	3300031896	Soil	MRSTLIIACAIVVFAAGAKAQDALKPCRQIKDDGKRL
Ga0306921_103766331	3300031912	Soil	MRAILTIACASVLFAAGAQAQDALKSCRQIKDDGERLKCYD
Ga0306921_115558481	3300031912	Soil	MRATLTIACASVLFAAGAQAQDALKSCRQIKDDGERLKCYDGL
Ga0310912_101919011	3300031941	Soil	MRSTLIIVCAIVVFAAGAKAQDALKPCRQIKDDGKRLKC
Ga0318530_102255882	3300031959	Soil	MRTTLIIACAIVVFAGGAKAQDASCRQIKDDGKRLKCYDRLDRSS
Ga0318531_101738501	3300031981	Soil	MRSTLIIACAIVVFAAGAKAQDALKPCRQIKDDGKRLKCYDRLDRSSSSARESLGQSRPGGATAWI
Ga0306922_102255134	3300032001	Soil	MRSTLIIACAIVVFAAGAKAQDALKPCRQIKDDGKRLKCYDSLDRSSSS
Ga0306922_105423273	3300032001	Soil	MRTIVIVAFAGFVFAAGAQAQEGLNRCHQIKDDAERLKCY
Ga0310911_101426821	3300032035	Soil	MRTTLIIACAFVVFAAGAQAQDASNPCRQIKDDGKRLKCYDRLDR
Ga0318505_101462812	3300032060	Soil	MRTTLIIACAFAVFAAGAQAQDASNPCRQIKDDGKRLKCYDRLDRPSA
Ga0318505_106327052	3300032060	Soil	MRAILTIACASVLFAAGAQAQDALKSCRQIKDDGERLKCYDGLDTSSAN
Ga0318504_102110843	3300032063	Soil	MRSTLIIACAIVVFAAGAKAQDALKPCRQIKDDGKRLKCYDRLDRSSS
Ga0307472_1006319571	3300032205	Hardwood Forest Soil	MRAILIIACASVAFTAGAQAQDALRACRQLKDDAERLKCYDRIDTSASN
Ga0306920_1005018861	3300032261	Soil	MRSTLIIACAIVVFAAGAKAQDALKPCRQIKDDGKRLKC
Ga0318519_102480461	3300033290	Soil	MRATLTIACASVLFAAGAQAQDALKSCRQIKDDGERLKCYDGLDTSSANATGRPA

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F072611

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences