Metagenome / Metatranscriptome Family F072602

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F072602
Family Type	Metagenome / Metatranscriptome
Number of Sequences	121
Average Sequence Length	89 residues
Representative Sequence	MNSKLLTAVIAAAFVTVSAASWAQVAAGGNTVPKYSNVEASKNRKVVNHGVGGNSAPTYAKVEASKNKTVSKHGVGGNTEPIYPKVGTH
Number of Associated Samples	78
Number of Associated Scaffolds	121

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	73.55 %
% of genes near scaffold ends (potentially truncated)	34.71 %
% of genes from short scaffolds (< 2000 bps)	90.08 %
Associated GOLD sequencing projects	71
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.20

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (78.512 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (19.008 % of family members)
Environment Ontology (ENVO)	Unclassified (34.711 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (69.421 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	Yes	Secondary Structure distribution:	α-helix: 20.51% β-sheet: 0.00% Coil/Unstructured: 79.49%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.20
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.20
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 121 Family Scaffolds
PF03595	SLAC1	3.31
PF01425	Amidase	2.48
PF13467	RHH_4	1.65
PF00528	BPD_transp_1	1.65
PF04519	Bactofilin	0.83
PF00805	Pentapeptide	0.83
PF07883	Cupin_2	0.83
PF00672	HAMP	0.83
PF04392	ABC_sub_bind	0.83
PF14384	BrnA_antitoxin	0.83
PF07589	PEP-CTERM	0.83
PF00198	2-oxoacid_dh	0.83
PF00005	ABC_tran	0.83
PF00753	Lactamase_B	0.83

COG ID	Name	Functional Category	% Frequency in 121 Family Scaffolds
COG1275	Tellurite resistance protein TehA and related permeases	Defense mechanisms [V]	3.31
COG0154	Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit or related amidase	Translation, ribosomal structure and biogenesis [J]	2.48
COG0508	Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component	Energy production and conversion [C]	0.83
COG1357	Uncharacterized conserved protein YjbI, contains pentapeptide repeats	Function unknown [S]	0.83
COG1664	Cytoskeletal protein CcmA, bactofilin family	Cytoskeleton [Z]	0.83
COG2984	ABC-type uncharacterized transport system, periplasmic component	General function prediction only [R]	0.83

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	78.51 %
All Organisms	root	All Organisms	21.49 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	78.51 %
cellular organisms	root	All Organisms → cellular organisms	21.49 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	78.51 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	21.49 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	78.51 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	12.40 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	78.51 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	9.09 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	78.51 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	4.13 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	2.48 %
unclassified Terriglobia	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → unclassified Terriglobia	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	78.51 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	3.31 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1.65 %
Acidobacteriia bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → unclassified Terriglobia → Acidobacteriia bacterium	0.83 %
Alphaproteobacteria bacterium 13_2_20CM_2_64_7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	78.51 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2.48 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1.65 %
Acidobacteriia bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → unclassified Terriglobia → Acidobacteriia bacterium	0.83 %
Alphaproteobacteria bacterium 13_2_20CM_2_64_7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	78.51 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1.65 %
unclassified Bradyrhizobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium	0.83 %
Acidobacteriia bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → unclassified Terriglobia → Acidobacteriia bacterium	0.83 %
Alphaproteobacteria bacterium 13_2_20CM_2_64_7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	78.51 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1.65 %
Bradyrhizobium sp. Tv2a-2	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. Tv2a-2	0.83 %
Acidobacteriia bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → unclassified Terriglobia → Acidobacteriia bacterium	0.83 %
Alphaproteobacteria bacterium 13_2_20CM_2_64_7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	0.83 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2166559005\|cont_contig02955	All Organisms → cellular organisms → Bacteria	2348	Open in IMG/M
2166559005\|cont_contig26702	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1130	Open in IMG/M
2170459003\|FZN2CUW02HBSTC	Not Available	552	Open in IMG/M
2170459005\|F1BAP7Q02IFZRW	Not Available	510	Open in IMG/M
2170459005\|F1BAP7Q02IZH1N	Not Available	520	Open in IMG/M
2170459010\|GIO7OMY01DX9EW	Not Available	529	Open in IMG/M
2170459010\|GIO7OMY02I9ZH9	Not Available	552	Open in IMG/M
2189573000\|GPBTN7E01DMM58	Not Available	512	Open in IMG/M
3300000364\|INPhiseqgaiiFebDRAFT_104986128	Not Available	726	Open in IMG/M
3300002245\|JGIcombinedJ26739_100059585	All Organisms → cellular organisms → Bacteria	3496	Open in IMG/M
3300005163\|Ga0066823_10015529	Not Available	1128	Open in IMG/M
3300005332\|Ga0066388_100000246	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	23191	Open in IMG/M
3300005332\|Ga0066388_100003844	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	9912	Open in IMG/M
3300005332\|Ga0066388_100110555	All Organisms → cellular organisms → Bacteria → Proteobacteria	3241	Open in IMG/M
3300005332\|Ga0066388_100214217	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2553	Open in IMG/M
3300005332\|Ga0066388_100304289	Not Available	2240	Open in IMG/M
3300005332\|Ga0066388_100541718	Not Available	1795	Open in IMG/M
3300005332\|Ga0066388_101075135	Not Available	1358	Open in IMG/M
3300005332\|Ga0066388_101394729	Not Available	1217	Open in IMG/M
3300005332\|Ga0066388_101775801	Not Available	1095	Open in IMG/M
3300005363\|Ga0008090_15852447	All Organisms → cellular organisms → Bacteria	1631	Open in IMG/M
3300005434\|Ga0070709_11006889	Not Available	663	Open in IMG/M
3300005434\|Ga0070709_11459950	Not Available	555	Open in IMG/M
3300005435\|Ga0070714_102176013	Not Available	540	Open in IMG/M
3300005437\|Ga0070710_11120292	Not Available	579	Open in IMG/M
3300005439\|Ga0070711_100311972	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1254	Open in IMG/M
3300005764\|Ga0066903_100285788	Not Available	2591	Open in IMG/M
3300005764\|Ga0066903_100361367	Not Available	2356	Open in IMG/M
3300005764\|Ga0066903_100523910	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	2019	Open in IMG/M
3300005764\|Ga0066903_101044654	All Organisms → cellular organisms → Bacteria	1499	Open in IMG/M
3300005764\|Ga0066903_101203936	Not Available	1407	Open in IMG/M
3300005764\|Ga0066903_101249802	Not Available	1383	Open in IMG/M
3300005764\|Ga0066903_101370558	All Organisms → cellular organisms → Bacteria	1326	Open in IMG/M
3300005764\|Ga0066903_102013987	Not Available	1109	Open in IMG/M
3300005764\|Ga0066903_102052524	All Organisms → cellular organisms → Bacteria	1099	Open in IMG/M
3300005764\|Ga0066903_103633190	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	830	Open in IMG/M
3300005764\|Ga0066903_104151360	Not Available	775	Open in IMG/M
3300005764\|Ga0066903_108577502	Not Available	521	Open in IMG/M
3300006050\|Ga0075028_100602715	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	652	Open in IMG/M
3300006175\|Ga0070712_100612381	All Organisms → cellular organisms → Bacteria	923	Open in IMG/M
3300006175\|Ga0070712_102046720	Not Available	501	Open in IMG/M
3300006797\|Ga0066659_11504498	Not Available	564	Open in IMG/M
3300009792\|Ga0126374_11367018	Not Available	575	Open in IMG/M
3300010043\|Ga0126380_11527921	Not Available	592	Open in IMG/M
3300010147\|Ga0126319_1187069	Not Available	804	Open in IMG/M
3300010359\|Ga0126376_12677666	Not Available	548	Open in IMG/M
3300010361\|Ga0126378_13022005	Not Available	536	Open in IMG/M
3300010366\|Ga0126379_11669682	Not Available	742	Open in IMG/M
3300010366\|Ga0126379_12565483	Not Available	608	Open in IMG/M
3300010376\|Ga0126381_102163431	Not Available	800	Open in IMG/M
3300010376\|Ga0126381_103278488	Not Available	639	Open in IMG/M
3300010398\|Ga0126383_13434735	Not Available	517	Open in IMG/M
3300011106\|Ga0151489_1570786	Not Available	630	Open in IMG/M
3300012948\|Ga0126375_11130006	Not Available	647	Open in IMG/M
3300012955\|Ga0164298_10438418	Not Available	856	Open in IMG/M
3300012957\|Ga0164303_10273427	Not Available	981	Open in IMG/M
3300012957\|Ga0164303_10325264	Not Available	918	Open in IMG/M
3300012971\|Ga0126369_10743917	Not Available	1060	Open in IMG/M
3300012971\|Ga0126369_13294486	Not Available	529	Open in IMG/M
3300012984\|Ga0164309_10789555	Not Available	763	Open in IMG/M
3300012985\|Ga0164308_11746692	Not Available	578	Open in IMG/M
3300012989\|Ga0164305_10929224	Not Available	733	Open in IMG/M
3300015371\|Ga0132258_10643164	All Organisms → cellular organisms → Bacteria → Proteobacteria	2666	Open in IMG/M
3300015371\|Ga0132258_11842961	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1524	Open in IMG/M
3300015373\|Ga0132257_103295449	Not Available	588	Open in IMG/M
3300016270\|Ga0182036_10962702	Not Available	702	Open in IMG/M
3300016294\|Ga0182041_10937755	Not Available	780	Open in IMG/M
3300016294\|Ga0182041_11341852	Not Available	655	Open in IMG/M
3300016294\|Ga0182041_12257212	Not Available	509	Open in IMG/M
3300016341\|Ga0182035_10117512	Not Available	1983	Open in IMG/M
3300016341\|Ga0182035_11155517	Not Available	690	Open in IMG/M
3300016371\|Ga0182034_10645597	Not Available	896	Open in IMG/M
3300016371\|Ga0182034_10760943	Not Available	827	Open in IMG/M
3300016371\|Ga0182034_11752478	Not Available	547	Open in IMG/M
3300016404\|Ga0182037_10662772	Not Available	891	Open in IMG/M
3300016404\|Ga0182037_11930654	Not Available	529	Open in IMG/M
3300016422\|Ga0182039_11014843	Not Available	744	Open in IMG/M
3300016445\|Ga0182038_10298951	Not Available	1315	Open in IMG/M
3300016445\|Ga0182038_10664884	Not Available	904	Open in IMG/M
3300021168\|Ga0210406_10604078	Not Available	856	Open in IMG/M
3300021178\|Ga0210408_11180823	Not Available	585	Open in IMG/M
3300021478\|Ga0210402_10411868	Not Available	1255	Open in IMG/M
3300021560\|Ga0126371_10239371	Not Available	1925	Open in IMG/M
3300021560\|Ga0126371_10288077	All Organisms → cellular organisms → Bacteria → Proteobacteria	1766	Open in IMG/M
3300022717\|Ga0242661_1166457	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → unclassified Terriglobia → Acidobacteriia bacterium	503	Open in IMG/M
3300025915\|Ga0207693_10836397	Not Available	708	Open in IMG/M
3300028047\|Ga0209526_10011289	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	6166	Open in IMG/M
3300028787\|Ga0307323_10231586	Not Available	666	Open in IMG/M
3300029701\|Ga0222748_1087022	Not Available	590	Open in IMG/M
3300031231\|Ga0170824_105271709	Not Available	642	Open in IMG/M
3300031231\|Ga0170824_116729070	All Organisms → cellular organisms → Bacteria	665	Open in IMG/M
3300031469\|Ga0170819_10267237	Not Available	560	Open in IMG/M
3300031474\|Ga0170818_111768163	Not Available	515	Open in IMG/M
3300031544\|Ga0318534_10516483	Not Available	682	Open in IMG/M
3300031545\|Ga0318541_10649451	Not Available	590	Open in IMG/M
3300031573\|Ga0310915_10147046	All Organisms → cellular organisms → Bacteria → Proteobacteria	1628	Open in IMG/M
3300031573\|Ga0310915_10710155	Not Available	710	Open in IMG/M
3300031680\|Ga0318574_10301483	Not Available	931	Open in IMG/M
3300031736\|Ga0318501_10767862	Not Available	533	Open in IMG/M
3300031763\|Ga0318537_10356507	Not Available	540	Open in IMG/M
3300031771\|Ga0318546_10291771	Not Available	1128	Open in IMG/M
3300031781\|Ga0318547_10751975	Not Available	607	Open in IMG/M
3300031796\|Ga0318576_10561126	Not Available	538	Open in IMG/M
3300031879\|Ga0306919_11371122	Not Available	534	Open in IMG/M
3300031890\|Ga0306925_10546303	Not Available	1229	Open in IMG/M
3300031890\|Ga0306925_11338503	Not Available	710	Open in IMG/M
3300031894\|Ga0318522_10248245	Not Available	675	Open in IMG/M
3300031896\|Ga0318551_10150938	Not Available	1268	Open in IMG/M
3300031910\|Ga0306923_11223179	Not Available	802	Open in IMG/M
3300031912\|Ga0306921_10444584	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. Tv2a-2	1511	Open in IMG/M
3300031912\|Ga0306921_10616430	All Organisms → cellular organisms → Bacteria	1254	Open in IMG/M
3300031946\|Ga0310910_10664731	Not Available	825	Open in IMG/M
3300031946\|Ga0310910_10749479	Not Available	771	Open in IMG/M
3300031947\|Ga0310909_10186528	Not Available	1719	Open in IMG/M
3300031954\|Ga0306926_12043052	All Organisms → cellular organisms → Bacteria	643	Open in IMG/M
3300032044\|Ga0318558_10550058	Not Available	577	Open in IMG/M
3300032059\|Ga0318533_10675774	Not Available	758	Open in IMG/M
3300032180\|Ga0307471_103218851	Not Available	579	Open in IMG/M
3300032261\|Ga0306920_101970238	Not Available	819	Open in IMG/M
3300032261\|Ga0306920_103391210	Not Available	592	Open in IMG/M
3300033289\|Ga0310914_10864034	Not Available	804	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	95.87%
Host-Associated	Host-Associated	2.48%
Engineered	Engineered	1.65%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	94.21%
Plants	Host-Associated → Plants	2.48%
Aquatic	Environmental → Aquatic	1.65%
Modeled	Engineered → Modeled	1.65%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	94.21%
Rhizoplane	Host-Associated → Plants → Rhizoplane	2.48%
Simulated Communities (Sequence Read Mixture)	Engineered → Modeled → Simulated Communities (Sequence Read Mixture)	1.65%
Freshwater	Environmental → Aquatic → Freshwater	0.83%
Sediment	Environmental → Aquatic → Sediment	0.83%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	68.59%
Loam	Environmental → Terrestrial → Soil → Loam	25.62%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	2.48%
Unclassified	Engineered → Modeled → Simulated Communities (Sequence Read Mixture) → Unclassified	1.65%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	0.83%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.83%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	42.15%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	19.01%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	19.01%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	6.61%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	6.61%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	2.48%
Unclassified	Engineered → Modeled → Simulated Communities (Sequence Read Mixture) → Unclassified → Unclassified	1.65%
Unclassified	Environmental → Aquatic → Freshwater → Groundwater → Unclassified	0.83%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.83%
Tropical Rainforest	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest	0.83%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	19.01%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	19.01%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	17.36%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	11.57%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	5.79%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	5.79%
Grass Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grass Soil	4.96%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	3.31%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	2.48%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.65%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	1.65%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	1.65%
Simulated	Engineered → Modeled → Simulated Communities (Sequence Read Mixture) → Unclassified → Unclassified → Simulated	1.65%
Soil	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil	0.83%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	0.83%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.83%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	0.83%
Tropical Rainforest Soil	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest → Tropical Rainforest Soil	0.83%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2166559005	Simulated microbial communities from Lyon, France	Engineered	Open in IMG/M
2170459003	Grass soil microbial communities from Rothamsted Park, UK - March 2009 indirect MP BIO 1O1 lysis 0-21cm	Environmental	Open in IMG/M
2170459005	Grass soil microbial communities from Rothamsted Park, UK - July 2009 direct MP BIO1O1 lysis 0-21cm	Environmental	Open in IMG/M
2170459010	Grass soil microbial communities from Rothamsted Park, UK - December 2009 direct MP BIO1O1 lysis 0-9cm (no DNA from 10 to 21cm!!!)	Environmental	Open in IMG/M
2189573000	Grass soil microbial communities from Rothamsted Park, UK - July 2010 direct MP BIO 1O1 lysis 0-21cm (T0 for microcosms)	Environmental	Open in IMG/M
3300000364	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300002245	Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)	Environmental	Open in IMG/M
3300005163	Soil and rhizosphere microbial communities from Laval, Canada - mgHMB	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005363	Tropical rainforest soil microbial communities from the Amazon Forest, Brazil, analyzing deforestation - Metatranscriptome F II A100 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300005434	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG	Environmental	Open in IMG/M
3300005435	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG	Environmental	Open in IMG/M
3300005437	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG	Environmental	Open in IMG/M
3300005439	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006050	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2014	Environmental	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300006797	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_108	Environmental	Open in IMG/M
3300009792	Tropical forest soil microbial communities from Panama - MetaG Plot_12	Environmental	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010147	Soil microbial communities from California, USA to study soil gas exchange rates - BB-CA-RED metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300011106	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLMC (Metagenome Metatranscriptome) (version 2)	Environmental	Open in IMG/M
3300012948	Tropical forest soil microbial communities from Panama - MetaG Plot_14	Environmental	Open in IMG/M
3300012955	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_216_MG	Environmental	Open in IMG/M
3300012957	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_207_MG	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300012984	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_247_MG	Environmental	Open in IMG/M
3300012985	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_246_MG	Environmental	Open in IMG/M
3300012989	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_237_MG	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300016270	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080	Environmental	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300016341	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170	Environmental	Open in IMG/M
3300016371	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172	Environmental	Open in IMG/M
3300016404	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082	Environmental	Open in IMG/M
3300016422	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111	Environmental	Open in IMG/M
3300016445	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108	Environmental	Open in IMG/M
3300021168	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-M	Environmental	Open in IMG/M
3300021178	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-M	Environmental	Open in IMG/M
3300021478	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300022717	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-11-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300025915	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300028047	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300028787	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_381	Environmental	Open in IMG/M
3300029701	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-O (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031469	Fir Spring Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031474	Fir Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031544	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f26	Environmental	Open in IMG/M
3300031545	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f26	Environmental	Open in IMG/M
3300031573	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111	Environmental	Open in IMG/M
3300031680	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f22	Environmental	Open in IMG/M
3300031736	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f21	Environmental	Open in IMG/M
3300031763	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f29	Environmental	Open in IMG/M
3300031771	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f19	Environmental	Open in IMG/M
3300031781	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f20	Environmental	Open in IMG/M
3300031796	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f24	Environmental	Open in IMG/M
3300031879	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2)	Environmental	Open in IMG/M
3300031890	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)	Environmental	Open in IMG/M
3300031894	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f18	Environmental	Open in IMG/M
3300031896	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f19	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental	Open in IMG/M
3300031946	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF172	Environmental	Open in IMG/M
3300031947	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.T000H	Environmental	Open in IMG/M
3300031954	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)	Environmental	Open in IMG/M
3300032044	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f20	Environmental	Open in IMG/M
3300032059	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f27	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300033289	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN108	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
cont_0955.00000240	2166559005	Simulated	LLTAVIAAAFVSVSGASWAQVAAGGNTVPKYNNVDASKNKKVMNHGVGGNSAPSYGSTPASTNKKVSKHGVGGNTEPTYPKTGTH
cont_0702.00001990	2166559005	Simulated	MLWRAGYCIRRGPVASFVTVSGASWAQVGVGGNSVAKYPTVEGSKNKKVTNHGVGGNSAPSYSATEASKNKKVSKHGVGGNAEPSYPKVGTH
E4A_03975790	2170459003	Grass Soil	KLLTAVIAAAFVSVSGASWAQVAAGGNTVPKYNNVDASKNKKVMNHGVGGNSAPSYGSTPASTNKKVSKHGVGGNTEPTYPKTGTH
E41_08031210	2170459005	Grass Soil	MSPAKTTSREEYEMNNKLLTAVIAAAFVTVSGASWAQVAAGGNTVPKYGNVEASKNKKVVNHGVGGNSAPSYPAAEASKNRKVSKHGVGG
E41_09397570	2170459005	Grass Soil	MLWRAGYCIRRGPVASFVTVSGASWAQVGVGGNSVAKYPTVEGSKNKKVTNHGVGGNSAPSYSATEASKNKKVSKHGVGGNAEPSY
F62_09888930	2170459010	Grass Soil	MKSKLLTAVIAAAFMTVSGASWAYVGGNTIVKYPNADASKNKKVVNHGVGGNSAPSYPATPGSKNKKVVNHGVGGNSAPSYPATSK
F62_04930750	2170459010	Grass Soil	MIKKVLATVTVASFVTVSGASWAQVGVGGNSVAKYPTVEGSKNKKVTNHGVGGNSAPSYSATEASKNKKVSKHGVGGNAEPSYPKVGTH
N55_06771070	2189573000	Grass Soil	KRKSHNQPAKTIREEYEMNFKLLTAVIAAAFVTVSGASWAQVAAGGNTVPKYGNVEASKNKKVVNHGVGGNSAPSYPAAEASKNRKVSKHGVWRQC
INPhiseqgaiiFebDRAFT_1049861282	3300000364	Soil	MKSKLLTAVIAAAFMTVSGASFAYVGGNTIVKYPNADASKNKKVVNHGVGGNSAPSYPATPGSKNKKVVNHGVGGNSAPSYPATSK*
JGIcombinedJ26739_1000595854	3300002245	Forest Soil	MLGYVAYKDDKQRGSAMKSKLLTAVIAAAFMTVSGASFAYVGGNTIVKYPNPEASKNKKVVNHGVGGNSAPSYPATPGSKNKKVVNHGVGGNSAPSYPATSK*
Ga0066823_100155292	3300005163	Soil	MLSHVAFKDDKQRGSAMKSKLLTAVIAAAFMTVSGASWAYVGGNTIVKYPNADASKNKKVVNHGVGGNSAPSYPATPGSKNKKVVNHGVGGNSAPSYPATSK*
Ga0066388_10000024610	3300005332	Tropical Forest Soil	MNKKLLTAVIAAAFVTVSAASWAQVAAGGNAAPKYGNVEASKNKKVLNHGVGGNSAPTYAKVEASKNKTVSKHGVGGNAEPVYPKVGIH*
Ga0066388_1000038442	3300005332	Tropical Forest Soil	MKNKLLTAVIAAAFVTVSGASWAQTAVGGNSVPKYGNVEGSKNKKVTDHGVGANSAPKYGSMAASKNKTVSKHGVGANVEPVYPKTGTH*
Ga0066388_1001105552	3300005332	Tropical Forest Soil	MKNKLLTAIVAAAFVTVSGASWAQVGVGANAVPKYTNVEGSKNKKVTDHGVGANSAPKYGSMAASKNKKVSKHGVGANVEPVYPKTGTH*
Ga0066388_1002142172	3300005332	Tropical Forest Soil	MNSKLLTAVISAAFVAVSAASWAQVAAGGNAAPKYGSVEASKNKQVVNHGVGGNSAPSYAVTPASKNRTVSKHGVGGNAEPIYAKVEIH*
Ga0066388_1003042894	3300005332	Tropical Forest Soil	MNSKLLTAVIAAAFVTVSAASWAQVAAGGNVAPKYSNVEASKNRKVVNHGVGGNSAPMYAKVEASKNKTVSKHGVGGNAEPIYPKVGIH*
Ga0066388_1005417181	3300005332	Tropical Forest Soil	MNNKLLTAVIAAVFVTVSAASWAQVAAGGNTVPKYGNVEASKNKKVVNHGVGGNSAPTYAKVDASKNKTVSKHGAGGNAEPIYPKVGTH*
Ga0066388_1010751352	3300005332	Tropical Forest Soil	MLARKRHAETNREHPMNSKLLTAVIAAAFVSVSAASWAQVAAGGNVAPKYNNVEASKNRKVVNHGVGGNSAPMYAKVEASKNKKVVNHGVGGNSAPIYPKVGIH*
Ga0066388_1013947292	3300005332	Tropical Forest Soil	MKNKLLTAIVAAAFVTASGASWAQVGVGGNVVPKYTNVEGSKNKKVTDHGVGANSAPKYGSMAASKNKTVSKHGVGANVEPVYPKTGTH*
Ga0066388_1017758012	3300005332	Tropical Forest Soil	MNHKLLTAVIAAAFVTVSAASWAQVAAGGNSVPKYGNVEASKNKKVVNHGVGGNSAPTYAKVEASKNKTVSKHGAGGNAEPIYPKVGTH*
Ga0008090_158524472	3300005363	Tropical Rainforest Soil	MKNKLLTAIVAAAFVTVSGASWAQVGVGGNVVPKYTNVEGSKNKKVTDHGVGANSAPKYGSMAASKNRKVSKHGVGANVEPVYPKTGTH*
Ga0070709_110068891	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	HDQPAKTTSREEYEMNFKLLTALIAAAFVTVSGASWAQVAAGGNTVPKYGNVEASKNKKVVNHGVGGNSAPSYPAAEASKNRKVSKHGVGGNAEPTYPKVGTH*
Ga0070709_114599501	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	MKSKLLTAVIAAAFMTVSGASWAYVGGNTIVKYPNADASKNKKVVNHGVGGNSAPSYPATPGSKNKKVVNHGVGGNSAPSYPATSK*
Ga0070714_1021760131	3300005435	Agricultural Soil	CNVVKDTKNGEETMIKKVLATVTVASFVTVSGASWAQVGVGGNSVAKYPTVEASKNKKVVNHGVGGNSAPSYSATEASKNKTVSKHGVGGNAEPSYPKVGTH*
Ga0070710_111202921	3300005437	Corn, Switchgrass And Miscanthus Rhizosphere	DDKQRGSAMKSKLLTAVIAAAFMTVSGASWAYVGGNTIVKYPNADASKNKKVVNHGVGGNSAPSYPATPGSKNKKVVNHGVGGNSAPSYPATSK*
Ga0070711_1003119721	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	MIKKVLATVTVASFVTVSGASWAQVGVGGNSVAKYPTVEASKNKKVVNHGVGGNSAPSYSATEASKNKTVSKHGVGGNAEPSYPKVGTH*
Ga0066903_1002857883	3300005764	Tropical Forest Soil	MIKKILAGVTVALFVTVGGASWAQGVGGNAAANYPKVEASKNRKVTNHGAGANAAPSYPKVEASKNRKVTH*
Ga0066903_1003613672	3300005764	Tropical Forest Soil	MINKVLATTIAAALVIVSGASWAQVGVGGNSVAKYGNVEASKNRTVTNHGAGPNLAPSYPKVEASKNRKVTNHGVGGNATPTYAKTGTH*
Ga0066903_1005239102	3300005764	Tropical Forest Soil	MNSKLLTAVIAAAFVTVSAASWAQVAAGGNTVPKYSNVEASKNRKVVNHGVGGNSAPTYAKVEASKNKTVSKHGVGGNTEPIYPKVGTH*
Ga0066903_1010446542	3300005764	Tropical Forest Soil	MNNKLLTAAIAAAIVTVSAASWAQVAAGGNTVPKYGNVEASKNKKVVNHGVGGNSAPTYAKVEASKNRTVSKHGAGGNTEPIYPKVGTH*
Ga0066903_1012039362	3300005764	Tropical Forest Soil	MNGKLLTAVIAAAFVTVSAASWAQVAAGGNVAPKYSNVEASKNRTVVNHGVGGNSAPIYAKVEASKNKTVSKHGAGFNAEPIYPKVGIH*
Ga0066903_1012498023	3300005764	Tropical Forest Soil	MTYKLLTAVLAVAFVTATTASFAQVGVGGNSVAKYGEVPASKNRTVTKHGAGGNATPTYSNVEASKNRKVTKHGAGGNSTPEYPKTGTH*
Ga0066903_1013705582	3300005764	Tropical Forest Soil	MNHKLLTAVIAAAFVTVSAASWAQVAAGGNTVPKYGNVEASKNKKVVNHGVGGNSAPTYAKVDASKNKTVSKHGAGGNAEPIYPKVGTH*
Ga0066903_1020139872	3300005764	Tropical Forest Soil	MNSKLLTAVIAAAFVSVSAASWAQVAAGGNVAPKYSNVEASKNRKVLNHGVGGNSAPTYAKVEASKNKTVSKHGVGGNAEPIYPKVGIH*
Ga0066903_1020525242	3300005764	Tropical Forest Soil	MNHKLLTAVIAAAFVTVSAASWAQVAAGGNSVPKYGNVEASKNKKVVNHGVGGNSAPTYAKVAASKNKTVSKHGAGGNAEPIYPKVGTH*
Ga0066903_1036331902	3300005764	Tropical Forest Soil	MNSKLLTAVISAAFVAVSAASWAQVAAGGNAAPKYGSVEASKNKQVVNHGVGGNSAPSYAVTPASKNRTVSKHGVGGNAEPIYAKVGIH*
Ga0066903_1041513603	3300005764	Tropical Forest Soil	MNNKLLTAAIAAAFVTMSAASWAQVAAGGNSVPKYGAVEVSKNKKVVNHGVGGNSAPTYAKVDASKNKTVSKHGAGGNA
Ga0066903_1085775022	3300005764	Tropical Forest Soil	MNNKLLAAVIAAAFVTVSATAWAQVGAGGNAVPKYGNVEASKNKKVVNHGVGANSAPTYTKVEASKNKTVSKHGAGGNTEPIYPKVGTH*
Ga0075028_1006027152	3300006050	Watersheds	MSRAKTTSREEYEMNNKLLAAVIAIAFVTVSGASWAQVAAGGNTVPKYGSVEASKNKKVVNHGVGGNSAPSYPAAEASKNRKVSKHGVGGNAEPTY
Ga0070712_1006123813	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	MKSKLLTAVIAAAFMTVSGASFAYVGGNTIVKYPNPEASKNKKVVNHGVGGNSAPSYPATPGSKNKKVVNHGVGGNSAPSYPATSK*
Ga0070712_1020467201	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	MIKKVLATVTVASFVTVSGASWAQVGVGGNSVAKYPTVEASKNKKVMNHGVGGNSAPSYSATEASKNKTVSKHGVGGNAEPSYPKVGTH*
Ga0066659_115044981	3300006797	Soil	MKNKLLTAVIAAAFVTVSGASWAQVAAGGNTVPKYNNVEGSKNKKVTNHGVGGNSAPAYTATPASKNKKVVNHGVG
Ga0126374_113670181	3300009792	Tropical Forest Soil	MKNKLLTAIVAAAFVTVSGASWAQVGVGANAVPKYTNVEGSKNKKVTDHGVGANSAPKYGSMAASKNKTVSKHGVGANVEPVYPKTGTH*
Ga0126380_115279212	3300010043	Tropical Forest Soil	NHKLLTAVIAAAFVTVSAASWAQVAAGGNTVPKYGNVEASKNKKVVNHGVGGNSAPTYAKVEASKNKTVSKHGAGGNTEPIYPKVGTH*
Ga0126319_11870691	3300010147	Soil	MIKKVLATVTVASFVTVSGASWAQVGVGGNSVAKYPTVEGSKNKKVTNHGVGGNSAPSYSATEASKNKKVSKHGVGGNAEPSYPKVGTH*
Ga0126376_126776661	3300010359	Tropical Forest Soil	MKNKLLTAIVAAAFVTVSGASWAQVGVGGNVVPKYTNVEGSKNKKVTDHGVGANSAPKYGSMAASKNKTVSKHGVGANVEPVYPKTGTH*
Ga0126378_130220052	3300010361	Tropical Forest Soil	MNSKLLTAVIAAAFVSVSAASWAQVAAGGNVAPKYNNVEASKNKKVVNHGVGGNSAPMYAKVDASKNKTVSNHGVGGNSAPVYPKVGIH*
Ga0126379_116696821	3300010366	Tropical Forest Soil	MKNKLLTAIVAAAFVTASGASWAQVGVGANAVPKYTNVEGSKNKKVTDHGVGANSAPKYGSMAASKNKKVSKHGVGANVEPVYPKTGTH*
Ga0126379_125654831	3300010366	Tropical Forest Soil	MNSKLLTAVIAAAFVSVSAASWAQVAAGGNVAPKYNNVEASKNKKVVNHGVGGNSAPMYAKVDASKNKTVSNHGVGGNSAPMYPKVGIH*
Ga0126381_1021634311	3300010376	Tropical Forest Soil	MNSKLLTAVIAAAFVSVSAASWAQVAAGGNVAPKYNNVEASKNRKVVNHGVGGNSAPMYAKVEASKNKKVVNHGVGGNSAPIYPKVGIH*
Ga0126381_1032784881	3300010376	Tropical Forest Soil	AFVTVSGASWAQTAVGGNSVPKYGNVEGSKNKKVTDHGVGANSAPKYGSMAASKNKTVSKHGVGANVEPVYPKTGTH*
Ga0126383_134347351	3300010398	Tropical Forest Soil	TVSGASWAQTAVGGNSVPKYGNVEGSKNKKVTDHGVGANSAPKYGSMAASKNKTVSKHGVGANVEPVYPKTGTH*
Ga0151489_15707861	3300011106	Soil	MKSKLLTAVIAAAFMTVSGASFAYVGGNTIVKYPNPEASKNKKVVNHGVGGNSAPSYPATPGSKNKKVVNHGV
Ga0126375_111300061	3300012948	Tropical Forest Soil	MNHKLLTAVIAAAFVTVSAASWAQVAAGGNSVPKYGAVEVSKNKKVVNRGVGGNSAPTYAKVDASKNKTVSKHGAGGNAEPIYPKVGTH*
Ga0164298_104384182	3300012955	Soil	MLGNVAYKDDKQRGSAMKSKLLTAVIAAAFMTVSGASWAYVGGNTIVKYPNADASKNKKVVNHGVGGNSAPSYPATPGSKNKKVVNHGVGGNSAPSYPATSK*
Ga0164303_102734272	3300012957	Soil	MLGYVAYKDDKQRGSAMKTKLLTAVIAAAFMTVSGASWAYVGGNTIVKYPNADASKNKKVVNHGVGGNSAPSYPATPGSKNKKVVNHGVGGNSAPSYPATSK*
Ga0164303_103252641	3300012957	Soil	MSPAKTTSREEYEMNNKLLTAVIAAAFVTVSGASWAQVAAGGNTVPKYGNVEASKNKKVVNHGVGGNSAPSYPAAEAAKNRKVSKHGVGGNAEPTYPKVGTH*
Ga0126369_107439171	3300012971	Tropical Forest Soil	MNSKLLTAVVAAAFVSVSAASWAQVAAGGNVAPKYNNVEASKNKKVVNHGVGGNSAPMYAKVEASKNKKVVNHGVGGNSAPIYPKV
Ga0126369_132944861	3300012971	Tropical Forest Soil	MNSKLLTAVISAAFVAVSAASWAQVAAGGNAAPKYGSVEASKNKQVVNHGVGGNSAPSYAVTPASKNRTVSKHGVGGN
Ga0164309_107895551	3300012984	Soil	MSPAKTTSREEYEMNNKLLTAVIAAAFVTVSGASWAQVAAGGNTVPKYGNVEASKNKKVVNHGVGGNSAPSYPAAEASKNRKVSKHGVGGNAEPTYPKVGTH*
Ga0164308_117466922	3300012985	Soil	MSPAKKASREEYEMNNKLLTAVIAAAFVTVSGASWAQVAAGGNTVPKYGNVEASKNKKVVNHGVGGNSAPSYPAAEASKNRKVSKHGVGGNAEPTYPKVGTH*
Ga0164305_109292241	3300012989	Soil	MNNKLLTAVIAAAFVTVSGASWAQVAAGGNTVPKYGNVEASKNTKVVNHGVGGNSAPSYPAAEASKNRKVSKHGVGGNAEPTYPKVGTH*
Ga0132258_106431644	3300015371	Arabidopsis Rhizosphere	AAAFMTISGASFAYVGGNTIVKYPNADASKNKKVVNHGVGGNSAPSYPATPGSKNKKVVNHGVGGNSAPSYPATSK*
Ga0132258_118429613	3300015371	Arabidopsis Rhizosphere	MNNKLLAAVIAAAFITVSGASWAQVAAGGNSVPKYGNVEASKNKKVVNHGVGGNSAPSYAATEASKNRKVSRHGVGGNAEPIYPKVGMH*
Ga0132257_1032954491	3300015373	Arabidopsis Rhizosphere	AAFMTISGASFAYVGGNTIVKYPNADASKNKKVVNHGVGGNSAPSYPATPGSKNKKVVNHGVGGNSAPSYPATSK*
Ga0182036_109627022	3300016270	Soil	MNSKLLTAVVAAAFVSVSAASWAQVAAGGNVAPKYNNVEASKNRKVVNHGVGGNSAPMYAKVDASKNKTVSKHGVGGNTEPIYPKVGIH
Ga0182041_109377552	3300016294	Soil	MNSKLLTAVVAAAFVSVSAASWAQVAAGGNVAPKYNNVEASKNKKVVNHGVGGNSAPMYAKVDASKNKTVSNHGVGGNSAPMYPKVGIH
Ga0182041_113418521	3300016294	Soil	MINKVLATTIAAALVIVSGASWAQVGVGGNSVAKYGNVEASKNRTVTNHGAGPNLAPSYPKVEASKNRKVTNHGVGGNATPTYAKTGTH
Ga0182041_122572121	3300016294	Soil	MNNKLLTAAIAAAIVTVSAASWAQVAAGGNTVPKYGNVEASKNKKVVNHGVGGNSAPTYAKVDASKNKTVSKHGAGGNTEPIYPKVGTH
Ga0182035_101175121	3300016341	Soil	EGNTAMNSKLLTAVIAAAFVSVSAASWAQVAAGGNVAPKYNNVEASKNRKVVNHGVGGNSAPMYAKVEASKNKKVVNHGVGGNSAPIYPKVGIH
Ga0182035_111555171	3300016341	Soil	MINKVLATTIAAALVIVSGASWAQVGVGGNSVAKYGNVEASKNRTVTNHGVGGNATPTYPKVEASKNRKVTNHGVGG
Ga0182034_106455971	3300016371	Soil	MNSKLLTAVIAAAFVSVSAASWAQVAAGGNVAPKYNNVEASKNRKVVNHGVGGNSAPTYAKVEASKNKTVSKHGVGGNAEPIYPKVGIH
Ga0182034_107609431	3300016371	Soil	MINKVLATTIAAALVIVSGASWAQVGVGGNSVAKYGNVEASKNRTVTNHGVGGNATPTYPKVEASKNRKVTNHGVGGNATPTYAKTGTH
Ga0182034_117524781	3300016371	Soil	MNSKLLTAVIAAAFVSVSAASWAQVAAGGNVAPKYNNVEASKNKKVVNHGVGGNSAPVYAKVDASKNKTVSKHGVGGNAEPIYPKVGI
Ga0182037_106627722	3300016404	Soil	MKNELLTAIVAAAFVTVSGASWAQVGVGANAVPKYTNVEGSKNKKVTDHGVGANSAPKYGSMAASKNKKVSKHGVGANVEPVYPKTGTH
Ga0182037_119306541	3300016404	Soil	MNSKLLTAVISAAFVAVSAASWAQVAAGGNAAPKYGSVEASKNKQVVNHGVGGNSAPSYAVTPASKNRTVSKHGVGG
Ga0182039_110148432	3300016422	Soil	VNSKLLTAVIAAAFVSVSAASWAQVAAGGNVAPKYNNVEASKNKKVVNHGVGGNSAPMYAKVEASKNKKVVNHGVGGNSAPIYPKVGIH
Ga0182038_102989512	3300016445	Soil	VNSKLLTAVIAADFVPVSAASWAQVAAGGNVAPKYSNVEASKNRKVVNHGVGGNSAPTYAKVEASKNKTVSKHGVGGNAEPIYPKVGIH
Ga0182038_106648842	3300016445	Soil	MNSKLLTAVIAAAFVGGSAASGAQVAAGGNVAPKYNNVEASKNRKVVNHGVGGNSAPMYAKVEASKNKKVVNHGVGGNSAPIYPKVGIH
Ga0210406_106040782	3300021168	Soil	MKNKLLTAVIAAAFVTVSGASWAQVGVGANSVPKYSNVEGSKNKKVTDHGVGANSAPKYGSMAASKNKKVSKHGVGANTEPVYPKAGTH
Ga0210408_111808231	3300021178	Soil	MIKKVLATVTVASFVTVSGASWAQVGVGGNSVAKYPTVEASKNKKVMNHGVGGNSAPSYSATEASKNKTVSKHGVGGNAEPSYPKVGTH
Ga0210402_104118682	3300021478	Soil	MLGYVAYKDDKQRGSAMKSKLLTAVIAAAFMTVSGASWAYVGGNTIVKYPNADASKNKKVVNHGVGGNSAPSYPATPGSKNKKVVNHGVGGNSAPSYPATSK
Ga0126371_102393711	3300021560	Tropical Forest Soil	MNSKLLTAVIAAAFVSVSAASWAQVAAGGNVAPKYSNVEASKNRKVLNHGVGGNSAPTYAKVEASKNKTVSKHGVGGNAEPIYPKVGIH
Ga0126371_102880772	3300021560	Tropical Forest Soil	MKNKLLTAIVAAAFVTVSGASWAQVGVGANAVPKYTNVEGSKNKKVTDHGVGANSAPKYGSMAASKNKKVSKHGVGANVEPVYPKTGTH
Ga0242661_11664571	3300022717	Soil	TQRGYAMKNKLLTAVIAAAFVTVSGASWAQVGVGANSVPKYSNVEGSKNKKVTDHGVGANSAPKYGSMAASKNKKVSKHGVGANTEPVYPKAGTH
Ga0207693_108363971	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	MSPAKKASREEYEMNNKLLAAVIATAFVTVSGASWAQVAAGGNTVPKYGSVEASKNKKVVNHGVGGNSAPSYPAAEASKNRKVSKHGVGGNAEPTYPKVGTH
Ga0209526_100112895	3300028047	Forest Soil	MLGYVAYKDDKQRGSAMKSKLLTAVIAAAFMTVSGASFAYVGGNTIVKYPNPEASKNKKVVNHGVGGNSAPSYPATPGSKNKKVVNHGVGGNSAPSYPATSK
Ga0307323_102315862	3300028787	Soil	AMKSKLLTAVIAAAFMTVSGASWAYVGGNTIVKYPNADASKNKKVVNHGVGGNSAPSYPATPGSKNKKVVNHGVGGNSAPSYPATSK
Ga0222748_10870221	3300029701	Soil	DTQRGYAMKNKLLTAVIAAAFVTVSGASWAQVGVGANSVPKYSNVEGSKNKKVTDHGVGANSAPKYGSMAASKNKKVSKHGVGANTEPVYPKAGTH
Ga0170824_1052717091	3300031231	Forest Soil	MNFRLLTAVIAAAFVTVSGASWAQVAAGGNTVPKYGNVEASKNKKVVNHGVGGNSAPSYPAAEASKNRKVSKHGVGGNAEPTYPKVGTH
Ga0170824_1167290701	3300031231	Forest Soil	AMKSKLLTAVIAAAFMTVSGASFAYVGGNTIVKYPNPEASKNKKVVNHGVGGNSAPSYPATPGSKNKKVVNHGVGGNSAPSYPATSK
Ga0170819_102672371	3300031469	Forest Soil	ALYVPQTQIAKEGERQMWNKLLSTVVAAAFVAISGASWAQVGVGGNSVAKYGTVEGSKNKKVTNHGVGGNSAPSYSATEASKNKKVSKHGVGGNAEPSYPKVGTH
Ga0170818_1117681631	3300031474	Forest Soil	MIKKVLATVTVASFVTVSGASWAQVGVGGNSVAKYPTVEASKNRKVTNHGAGGNSTPTYSKVEASKNKTVTKHGAGGN
Ga0318534_105164831	3300031544	Soil	MKNKLLTAVVAAAFVTVSGASWAQVGVGANAVPKYTNVEGSKNKKVTDHGVGANSAPKYGSMAASKNKKVSKHGVGANVEPVYPKTGTH
Ga0318541_106494512	3300031545	Soil	MKNKLLTAIVAAAFVTVSGASWAQVGVGANAVPKYTNVEGSKNKKVTDHGVGANSAPKYGSMAASKNRKVSKHGVGANVEPVYP
Ga0310915_101470463	3300031573	Soil	AAAFVTVSGASWAQVGVGANAVPKYTNVEGSKNKKVTDHGVGANSAPKYGSMAASKNKKVSKHGVGANVEPVYPKTGTH
Ga0310915_107101551	3300031573	Soil	MLASQTTRRDEQEGNTAMNSKLLTAVIAAAFVSVSAASWAQVAAGGNVAPKYNNVEASKNRKVVNHGVGGNSAPMYAKVEASKNKKVVNHGVGGNSAPIYPKVGIH
Ga0318574_103014831	3300031680	Soil	MKNKLLTAIVAAAFVTVSGASWAQVGVGANAVPKYTNVEGSKNKKVTDHGVGANSAPKYGSMAASKNRKVSKHGVGANVEPVYPKTGTH
Ga0318501_107678621	3300031736	Soil	MKNKLLTAIVAAAFVTVSGASWAQVGVGANAVPKYTNVEGSKNKKVTDHGVGANSAPKYGSMTASKNKKVSKHGVGANVEPVYPKTGTH
Ga0318537_103565071	3300031763	Soil	MKNKLLTAIVAAAFVTVSGASWAQVGVGGNVVPKYTNVEGSKNKKVTDHGVGANSAPKYGSMAASKNRKVSKHGVGANVEPVYPKTGTH
Ga0318546_102917713	3300031771	Soil	MKNKLLTAIVAAAFVTVSGASWAQVGVGANAVPKYTNVEGSKNKKVTDHGVGANSAPKYGSMAASKNKTVSKHGVGANVEPVYPKTGTH
Ga0318547_107519751	3300031781	Soil	YAMKNKLLTAIVAAAFVTVSGASWAQVGVGANAVPKYTNVEGSKNKKVTDHGVGANSAPKYGSMAASKNKKVSKHGVGANVEPVYPKTGTH
Ga0318576_105611261	3300031796	Soil	MKNKLLTAIVAAAFVTVSGASWAQVGVGGNVVPKYTNVEGSKNKKVTDHGVGANSAPKYGSMAASKNKTVSKHGVGANVEPVYPKTGTH
Ga0306919_113711222	3300031879	Soil	MKNKLLTAIVAAAFVTVSGASWAQVGVGANAVPKYTNVEGSKNKKVTDHGVGANSAPKYGSMAASKNKKVSKHGV
Ga0306925_105463031	3300031890	Soil	AFVTVSAASWAQVAAGGNSVPKYGNVEASKNKNVVNHGVGGNSAPSYSVTPASKNRKVSKHGVGGNAEPIYAKVGIH
Ga0306925_113385032	3300031890	Soil	AMNSKLLTAVIAAAFVSVSAASWAQVAGGGNVAPKYNNVEASKNRKVVNHGVGGNSAPMYAKVEASKNKKVVNHGVGGNSAPIYPKVGIH
Ga0318522_102482451	3300031894	Soil	MKNKLLTAIVAAAFVTVSGASWAQVGVGGNVVPKYTNVEGSKNKKVTDHGVGANSAPKYGSMAASKNKKVSKHGVGANVEPVYPKTGTH
Ga0318551_101509381	3300031896	Soil	MKNKLLTAIVATAFVTVSGASWAQVGVGANAVPKYTNVEGSKNKKVTDHGVGANSAPKYGSMAASKNKKVSKHGVGANVEPVYPKTGTH
Ga0306923_112231791	3300031910	Soil	MNSKLLTAVIAAAFVSVSAASWAQVAAGGNVAPKYSNVEASKNRKVVNHGVGGNSAPTYAKVEASKNKTVSKHGVGGNAEPIYPKVGIY
Ga0306921_104445841	3300031912	Soil	MNSKLLTAVISAAFVAVSAASWAQVAAGGNAAPKYGSVEASKNKQVVNHGVGGNSAPSYAVTPASKNRTVSKHGVGGNAEPIYAKVEIH
Ga0306921_106164302	3300031912	Soil	MNSKLLTAVIAAAFVSVSAASWAQVAAGGNVAPKYNNVEASKNRKVVNHGVGGNSAPMYAKVDASKNKTVSKHGVGGNTEPIYPKVGIH
Ga0310910_106647312	3300031946	Soil	MNSKLLTAVIAAAFVSVSAASWAQVAGGGNVAPKYNNVEASKNRKVVNHGVGGNSAPMYAKVEASKNKKVVNHGVGGNSAPIYPKVGIH
Ga0310910_107494791	3300031946	Soil	VNSKLLTAVIAAAFVTVSAASWAQVAAGGNVAPKYSNVEASKNRKVVNHGVGGNSAPTYAKVEASKNKTVSKHGVGGNTEPIYPKVGIH
Ga0310909_101865282	3300031947	Soil	MNSKLLTAVIAAAFVSVSAASWAQVAAGGNVAPKYNNVEASKNRKVVNHGVGGNSAPMYAKVEASKNKKVVNHGVGGNSAPIYPKVGIH
Ga0306926_120430522	3300031954	Soil	IGRKHAVNSKLLTAVIAAAFVTVSAASWAQVAAGGNVAPKYSNVEASKNRKVVNHGVGGNSAPTYAKVEASKNKTVSKHGVGGNAEPIYPKVGIH
Ga0318558_105500582	3300032044	Soil	MKNKLLTAIVAAAFVTVSGASWAQVGVGANAVPKYTNVEGSKNKKVTDHGVGANSAPKYGSMAASKNKKVSKHGVGA
Ga0318533_106757742	3300032059	Soil	MKNKLLTAIVAAAFVTVSGASWAQVGVGANAVPKYTNVEGSKNKKVTDHGVGANSAPKYGSMAASKNKKVSKHGVGANVE
Ga0307471_1032188511	3300032180	Hardwood Forest Soil	VGLNVLAKTTSREEYEMNSKLLTAAIAAAFVTVCGASWAQVAAGGNTVPKYGNAEASKNKKVVNHGVGGNSAPSYPAAEASKNRKVSKHGVGGNAEPTYPKVGTH
Ga0306920_1019702381	3300032261	Soil	MNSKLLTAVIAAAFVSVSAASWAQVAAGGNVAPKYNNVEASKNRKVVNHGVGGNSAPMYAKVDASKNKKVVNHGVGGNSAPVYPKVGIH
Ga0306920_1033912101	3300032261	Soil	MINKVLATTIAAALVIVSGASWAQVGVGGNSVAKYGNVEASKNRKVTNHGVGGNATPTYPKVEASKNRKVTNHGVGGNATPTYAKTGTH
Ga0310914_108640342	3300033289	Soil	MTSAACGIDLSHRPQTTRRDEQEGNTAMNSKLLTAVIAAAFVSVSAASWAQVAAGGNVAPKYNNVEASKNRKVVNHGVGGNSAPMYAKVEASKNKKVVNHGVGGNSAPIYPKVGIH

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F072602

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences