Metagenome / Metatranscriptome Family F072533

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F072533
Family Type	Metagenome / Metatranscriptome
Number of Sequences	121
Average Sequence Length	53 residues
Representative Sequence	MLDTIQSVSLLTIAEIVGPILLAAGLIYGIYHSRRRRAQQPKTPGTVYAQDK
Number of Associated Samples	82
Number of Associated Scaffolds	121

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	73.33 %
% of genes near scaffold ends (potentially truncated)	28.10 %
% of genes from short scaffolds (< 2000 bps)	91.74 %
Associated GOLD sequencing projects	75
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.48

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (61.983 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (16.529 % of family members)
Environment Ontology (ENVO)	Unclassified (28.099 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (58.678 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 51.25% β-sheet: 0.00% Coil/Unstructured: 48.75%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.48
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.48
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 121 Family Scaffolds
PF11154	DUF2934	9.09
PF00128	Alpha-amylase	5.79
PF00011	HSP20	2.48
PF01904	DUF72	2.48
PF13823	ADH_N_assoc	2.48
PF03401	TctC	1.65
PF02922	CBM_48	1.65
PF01717	Meth_synt_2	1.65
PF02843	GARS_C	1.65
PF02735	Ku	1.65
PF00106	adh_short	0.83
PF05239	PRC	0.83
PF04120	Iron_permease	0.83
PF01979	Amidohydro_1	0.83
PF00491	Arginase	0.83
PF13459	Fer4_15	0.83
PF05974	DUF892	0.83
PF11941	DUF3459	0.83
PF01408	GFO_IDH_MocA	0.83
PF01053	Cys_Met_Meta_PP	0.83
PF13533	Biotin_lipoyl_2	0.83
PF06559	DCD	0.83
PF11392	DUF2877	0.83
PF05957	DUF883	0.83
PF08241	Methyltransf_11	0.83
PF07883	Cupin_2	0.83
PF01266	DAO	0.83
PF11896	GlgE_dom_N_S	0.83
PF02464	CinA	0.83
PF13670	PepSY_2	0.83

COG ID	Name	Functional Category	% Frequency in 121 Family Scaffolds
COG0296	1,4-alpha-glucan branching enzyme	Carbohydrate transport and metabolism [G]	5.79
COG0366	Glycosidase/amylase (phosphorylase)	Carbohydrate transport and metabolism [G]	5.79
COG1523	Pullulanase/glycogen debranching enzyme	Carbohydrate transport and metabolism [G]	5.79
COG3280	Maltooligosyltrehalose synthase	Carbohydrate transport and metabolism [G]	5.79
COG0071	Small heat shock protein IbpA, HSP20 family	Posttranslational modification, protein turnover, chaperones [O]	2.48
COG1801	Sugar isomerase-related protein YecE, UPF0759/DUF72 family	General function prediction only [R]	2.48
COG0151	Phosphoribosylamine-glycine ligase	Nucleotide transport and metabolism [F]	1.65
COG0620	Methionine synthase II (cobalamin-independent)	Amino acid transport and metabolism [E]	1.65
COG1273	Non-homologous end joining protein Ku, dsDNA break repair	Replication, recombination and repair [L]	1.65
COG3181	Tripartite-type tricarboxylate transporter, extracytoplasmic receptor component TctC	Energy production and conversion [C]	1.65
COG0010	Arginase/agmatinase family enzyme	Amino acid transport and metabolism [E]	0.83
COG0075	Archaeal aspartate aminotransferase or a related aminotransferase, includes purine catabolism protein PucG	Amino acid transport and metabolism [E]	0.83
COG0156	7-keto-8-aminopelargonate synthetase or related enzyme	Coenzyme transport and metabolism [H]	0.83
COG0399	dTDP-4-amino-4,6-dideoxygalactose transaminase	Cell wall/membrane/envelope biogenesis [M]	0.83
COG0436	Aspartate/methionine/tyrosine aminotransferase	Amino acid transport and metabolism [E]	0.83
COG0520	Selenocysteine lyase/Cysteine desulfurase	Amino acid transport and metabolism [E]	0.83
COG0626	Cystathionine beta-lyase/cystathionine gamma-synthase	Amino acid transport and metabolism [E]	0.83
COG0717	dCTP deaminase	Nucleotide transport and metabolism [F]	0.83
COG1546	Nicotinamide mononucleotide (NMN) deamidase PncC	Coenzyme transport and metabolism [H]	0.83
COG1921	Seryl-tRNA(Sec) selenium transferase	Translation, ribosomal structure and biogenesis [J]	0.83
COG1982	Arginine/lysine/ornithine decarboxylase	Amino acid transport and metabolism [E]	0.83
COG2008	Threonine aldolase	Amino acid transport and metabolism [E]	0.83
COG2873	O-acetylhomoserine/O-acetylserine sulfhydrylase, pyridoxal phosphate-dependent	Amino acid transport and metabolism [E]	0.83
COG3685	Ferritin-like metal-binding protein YciE	Inorganic ion transport and metabolism [P]	0.83
COG4100	Cystathionine beta-lyase family protein involved in aluminum resistance	Inorganic ion transport and metabolism [P]	0.83
COG4575	Membrane-anchored ribosome-binding protein ElaB, inhibits growth in stationary phase, YqjD/DUF883 family	Translation, ribosomal structure and biogenesis [J]	0.83

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	61.98 %
Unclassified	root	N/A	38.02 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	61.98 %
Unclassified	root	N/A	38.02 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	61.98 %
Unclassified	root	N/A	38.02 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	51.24 %
Unclassified	root	N/A	38.02 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	2.48 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	0.83 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	48.76 %
Unclassified	root	N/A	38.02 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	2.48 %
Planctomycetes	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	38.02 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	25.62 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	13.22 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2.48 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	1.65 %
Planctomycetia	class	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	38.02 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	25.62 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	3.31 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2.48 %
Acetobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	1.65 %
Aestuariivirgaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Aestuariivirgaceae	0.83 %
Methylocystaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylocystaceae	0.83 %
Rhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae	0.83 %
Planctomycetales	order	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	38.02 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	25.62 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	3.31 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2.48 %
Aestuariivirga	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Aestuariivirgaceae → Aestuariivirga	0.83 %
Methylocystis	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylocystaceae → Methylocystis	0.83 %
Planctomycetaceae	family	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae	0.83 %
Acetobacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Acetobacter	0.83 %
Rhizobium/Agrobacterium group	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	38.02 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	25.62 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2.48 %
unclassified Methylocystis	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylocystaceae → Methylocystis → unclassified Methylocystis	0.83 %
unclassified Bradyrhizobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium	0.83 %
unclassified Aestuariivirga	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Aestuariivirgaceae → Aestuariivirga → unclassified Aestuariivirga	0.83 %
Planctomyces	genus	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → Planctomyces	0.83 %
Rhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Rhizobium	0.83 %
environmental samples	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Acetobacter → environmental samples	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	38.02 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	25.62 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2.48 %
Methylocystis sp.	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylocystaceae → Methylocystis → unclassified Methylocystis → Methylocystis sp.	0.83 %
unclassified Rhizobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Rhizobium → unclassified Rhizobium	0.83 %
unclassified Planctomyces	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → Planctomyces → unclassified Planctomyces	0.83 %
Aestuariivirga sp. YIM B02566	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Aestuariivirgaceae → Aestuariivirga → unclassified Aestuariivirga → Aestuariivirga sp. YIM B02566	0.83 %
Acetobacter sp. CAG:267	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Acetobacter → environmental samples → Acetobacter sp. CAG:267	0.83 %
Bradyrhizobium sp. AT1	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. AT1	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	38.02 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	25.62 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2.48 %
Rhizobium sp. BK650	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Rhizobium → unclassified Rhizobium → Rhizobium sp. BK650	0.83 %
Planctomyces sp. SH-PL14	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → Planctomyces → unclassified Planctomyces → Planctomyces sp. SH-PL14	0.83 %
Methylocystis sp.	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylocystaceae → Methylocystis → unclassified Methylocystis → Methylocystis sp.	0.83 %
Aestuariivirga sp. YIM B02566	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Aestuariivirgaceae → Aestuariivirga → unclassified Aestuariivirga → Aestuariivirga sp. YIM B02566	0.83 %
Acetobacter sp. CAG:267	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Acetobacter → environmental samples → Acetobacter sp. CAG:267	0.83 %
Bradyrhizobium sp. AT1	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. AT1	0.83 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000363\|ICChiseqgaiiFebDRAFT_13727395	Not Available	511	Open in IMG/M
3300000956\|JGI10216J12902_102403662	All Organisms → cellular organisms → Bacteria → Proteobacteria	1251	Open in IMG/M
3300001305\|C688J14111_10002440	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	4994	Open in IMG/M
3300001305\|C688J14111_10208895	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	607	Open in IMG/M
3300001686\|C688J18823_10032467	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3577	Open in IMG/M
3300002568\|C688J35102_118765023	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	594	Open in IMG/M
3300002568\|C688J35102_119188777	Not Available	651	Open in IMG/M
3300002568\|C688J35102_120569051	Not Available	1191	Open in IMG/M
3300002568\|C688J35102_120645342	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1288	Open in IMG/M
3300002568\|C688J35102_120683842	Not Available	1348	Open in IMG/M
3300003308\|Ga0006777J48905_1173373	Not Available	529	Open in IMG/M
3300004153\|Ga0063455_100595448	Not Available	718	Open in IMG/M
3300004463\|Ga0063356_104426034	Not Available	604	Open in IMG/M
3300005171\|Ga0066677_10765460	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	536	Open in IMG/M
3300005184\|Ga0066671_10050194	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2104	Open in IMG/M
3300005294\|Ga0065705_10325985	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1001	Open in IMG/M
3300005331\|Ga0070670_101130722	Not Available	715	Open in IMG/M
3300005340\|Ga0070689_100856913	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	802	Open in IMG/M
3300005340\|Ga0070689_102013621	Not Available	528	Open in IMG/M
3300005451\|Ga0066681_10927667	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	521	Open in IMG/M
3300005454\|Ga0066687_10389792	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	804	Open in IMG/M
3300005456\|Ga0070678_102115900	Not Available	533	Open in IMG/M
3300005466\|Ga0070685_11227312	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	571	Open in IMG/M
3300005511\|Ga0077121_10617955	Not Available	699	Open in IMG/M
3300005543\|Ga0070672_102088977	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	510	Open in IMG/M
3300005548\|Ga0070665_100188034	Not Available	2066	Open in IMG/M
3300005548\|Ga0070665_100332992	Not Available	1523	Open in IMG/M
3300005548\|Ga0070665_100905482	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	895	Open in IMG/M
3300005718\|Ga0068866_10680284	Not Available	704	Open in IMG/M
3300006034\|Ga0066656_10799792	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	604	Open in IMG/M
3300006046\|Ga0066652_100182077	All Organisms → cellular organisms → Bacteria	1792	Open in IMG/M
3300006177\|Ga0075362_10724802	Not Available	520	Open in IMG/M
3300006358\|Ga0068871_100224119	Not Available	1630	Open in IMG/M
3300006800\|Ga0066660_11676292	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	506	Open in IMG/M
3300006880\|Ga0075429_100837305	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	805	Open in IMG/M
3300006954\|Ga0079219_10529036	Not Available	837	Open in IMG/M
3300009053\|Ga0105095_10403113	Not Available	755	Open in IMG/M
3300009156\|Ga0111538_10446683	Not Available	1639	Open in IMG/M
3300009789\|Ga0126307_10618264	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	874	Open in IMG/M
3300010039\|Ga0126309_10090079	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1559	Open in IMG/M
3300010040\|Ga0126308_10258695	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1134	Open in IMG/M
3300010045\|Ga0126311_10074444	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2262	Open in IMG/M
3300011119\|Ga0105246_10426398	Not Available	1108	Open in IMG/M
3300011332\|Ga0126317_10349941	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	695	Open in IMG/M
3300012021\|Ga0120192_10042555	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	789	Open in IMG/M
3300012208\|Ga0137376_10642986	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	916	Open in IMG/M
3300012212\|Ga0150985_100890081	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1067	Open in IMG/M
3300012212\|Ga0150985_101137652	All Organisms → cellular organisms → Bacteria → Proteobacteria	1009	Open in IMG/M
3300012212\|Ga0150985_108326490	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3981	Open in IMG/M
3300012212\|Ga0150985_114090055	Not Available	520	Open in IMG/M
3300012212\|Ga0150985_116468351	Not Available	1206	Open in IMG/M
3300012212\|Ga0150985_119492358	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Acetobacter → environmental samples → Acetobacter sp. CAG:267	614	Open in IMG/M
3300012212\|Ga0150985_120015077	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	813	Open in IMG/M
3300012212\|Ga0150985_122927499	All Organisms → cellular organisms → Bacteria	545	Open in IMG/M
3300012212\|Ga0150985_122950446	All Organisms → cellular organisms → Bacteria	753	Open in IMG/M
3300012469\|Ga0150984_101063756	Not Available	749	Open in IMG/M
3300012469\|Ga0150984_101767823	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	730	Open in IMG/M
3300012469\|Ga0150984_104691308	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1156	Open in IMG/M
3300012469\|Ga0150984_106064745	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1168	Open in IMG/M
3300012469\|Ga0150984_108779674	Not Available	706	Open in IMG/M
3300012469\|Ga0150984_109380173	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	627	Open in IMG/M
3300012469\|Ga0150984_111526311	All Organisms → cellular organisms → Bacteria	676	Open in IMG/M
3300012469\|Ga0150984_117929252	Not Available	679	Open in IMG/M
3300012469\|Ga0150984_120267373	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	546	Open in IMG/M
3300012683\|Ga0137398_10156726	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Rhizobium → unclassified Rhizobium → Rhizobium sp. BK650	1481	Open in IMG/M
3300012924\|Ga0137413_10748720	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Aestuariivirgaceae → Aestuariivirga → unclassified Aestuariivirga → Aestuariivirga sp. YIM B02566	746	Open in IMG/M
3300012924\|Ga0137413_10777760	All Organisms → cellular organisms → Bacteria	733	Open in IMG/M
3300012929\|Ga0137404_10420855	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1181	Open in IMG/M
3300012988\|Ga0164306_10807898	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	756	Open in IMG/M
3300013306\|Ga0163162_12843690	Not Available	557	Open in IMG/M
3300013308\|Ga0157375_12718275	Not Available	592	Open in IMG/M
3300014326\|Ga0157380_10854032	Not Available	932	Open in IMG/M
3300014326\|Ga0157380_11181452	Not Available	808	Open in IMG/M
3300014326\|Ga0157380_11426870	Not Available	743	Open in IMG/M
3300014497\|Ga0182008_10783874	Not Available	552	Open in IMG/M
3300015161\|Ga0167623_1000791	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	12279	Open in IMG/M
3300015242\|Ga0137412_10197209	All Organisms → cellular organisms → Bacteria	1609	Open in IMG/M
3300015242\|Ga0137412_10227638	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1481	Open in IMG/M
3300015374\|Ga0132255_102622930	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	770	Open in IMG/M
3300018429\|Ga0190272_10043295	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2548	Open in IMG/M
3300018468\|Ga0066662_10353734	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1265	Open in IMG/M
3300018468\|Ga0066662_10525539	All Organisms → cellular organisms → Bacteria → Proteobacteria	1086	Open in IMG/M
3300018468\|Ga0066662_11793437	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	642	Open in IMG/M
3300018468\|Ga0066662_12429840	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	552	Open in IMG/M
3300018469\|Ga0190270_13024621	Not Available	532	Open in IMG/M
3300018476\|Ga0190274_13772480	Not Available	513	Open in IMG/M
3300018481\|Ga0190271_10311236	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1640	Open in IMG/M
3300018481\|Ga0190271_10500763	All Organisms → cellular organisms → Bacteria	1326	Open in IMG/M
3300018482\|Ga0066669_11755858	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	572	Open in IMG/M
3300018920\|Ga0190273_10650466	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	807	Open in IMG/M
3300019361\|Ga0173482_10465157	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	605	Open in IMG/M
3300019362\|Ga0173479_10029870	Not Available	1641	Open in IMG/M
3300021953\|Ga0213880_10211795	Not Available	548	Open in IMG/M
3300025901\|Ga0207688_10814096	Not Available	592	Open in IMG/M
3300025925\|Ga0207650_10379712	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → Planctomyces → unclassified Planctomyces → Planctomyces sp. SH-PL14	1167	Open in IMG/M
3300025926\|Ga0207659_10866648	Not Available	776	Open in IMG/M
3300025926\|Ga0207659_11466817	Not Available	584	Open in IMG/M
3300025930\|Ga0207701_10042095	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	4240	Open in IMG/M
3300025930\|Ga0207701_11168778	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. AT1	635	Open in IMG/M
3300025937\|Ga0207669_11501365	Not Available	575	Open in IMG/M
3300025940\|Ga0207691_11506476	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	550	Open in IMG/M
3300025960\|Ga0207651_10869548	Not Available	802	Open in IMG/M
3300026312\|Ga0209153_1037561	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1679	Open in IMG/M
3300027669\|Ga0208981_1160869	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	569	Open in IMG/M
3300027907\|Ga0207428_10297885	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1194	Open in IMG/M
3300028379\|Ga0268266_10981706	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	817	Open in IMG/M
3300028379\|Ga0268266_11855534	Not Available	577	Open in IMG/M
3300028536\|Ga0137415_10557453	All Organisms → cellular organisms → Bacteria	956	Open in IMG/M
3300030905\|Ga0308200_1038995	Not Available	848	Open in IMG/M
3300030905\|Ga0308200_1140778	Not Available	550	Open in IMG/M
3300031058\|Ga0308189_10131713	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	835	Open in IMG/M
3300031058\|Ga0308189_10257476	Not Available	662	Open in IMG/M
3300031058\|Ga0308189_10531343	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	511	Open in IMG/M
3300031091\|Ga0308201_10240724	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	618	Open in IMG/M
3300031091\|Ga0308201_10318827	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	560	Open in IMG/M
3300031092\|Ga0308204_10266802	Not Available	561	Open in IMG/M
3300031094\|Ga0308199_1065888	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	739	Open in IMG/M
3300031123\|Ga0308195_1038488	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	657	Open in IMG/M
3300031456\|Ga0307513_10626376	All Organisms → cellular organisms → Bacteria	784	Open in IMG/M
3300034268\|Ga0372943_0555430	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylocystaceae → Methylocystis → unclassified Methylocystis → Methylocystis sp.	752	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	57.85%
Host-Associated	Host-Associated	42.15%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	56.20%
Plants	Host-Associated → Plants	42.15%
Aquatic	Environmental → Aquatic	1.65%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	55.37%
Rhizosphere	Host-Associated → Plants → Rhizosphere	26.45%
Rhizoplane	Host-Associated → Plants → Rhizoplane	13.22%
Roots	Host-Associated → Plants → Roots	2.48%
Freshwater	Environmental → Aquatic → Freshwater	1.65%
Rock-Dwelling (Subaerial Biofilms)	Environmental → Terrestrial → Rock-Dwelling (Subaerial Biofilms)	0.83%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	43.80%
Soil	Host-Associated → Plants → Rhizosphere → Soil	19.01%
Loam	Environmental → Terrestrial → Soil → Loam	11.57%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	8.26%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	7.44%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	4.13%
Sediment	Environmental → Aquatic → Freshwater → Sediment	0.83%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	0.83%
Unclassified	Environmental → Terrestrial → Rock-Dwelling (Subaerial Biofilms) → Unclassified	0.83%
Soil	Host-Associated → Plants → Rhizoplane → Soil	0.83%
Bulk Soil	Host-Associated → Plants → Roots → Bulk Soil	0.83%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.83%
Unclassified	Host-Associated → Plants → Roots → Unclassified	0.83%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	28.93%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	19.01%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	13.22%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	8.26%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	8.26%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	7.44%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	4.13%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	2.48%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	0.83%
Unclassified	Environmental → Aquatic → Freshwater → Groundwater → Unclassified	0.83%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.83%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	0.83%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	0.83%
Unclassified	Environmental → Terrestrial → Rock-Dwelling (Subaerial Biofilms) → Unclassified → Unclassified	0.83%
Unclassified	Host-Associated → Plants → Rhizoplane → Soil → Unclassified	0.83%
Unclassified	Host-Associated → Plants → Roots → Bulk Soil → Unclassified	0.83%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	0.83%
Unclassified	Host-Associated → Plants → Roots → Unclassified → Unclassified	0.83%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	16.53%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	8.26%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere	8.26%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	7.44%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	7.44%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	6.61%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	6.61%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	4.13%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	4.13%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	3.31%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	2.48%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	2.48%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	2.48%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Corn, Switchgrass And Miscanthus Rhizosphere	1.65%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment	0.83%
Soil	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil	0.83%
Glacier Forefield Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil	0.83%
Terrestrial	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial	0.83%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere	0.83%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.83%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.83%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	0.83%
Exposed Rock	Environmental → Terrestrial → Rock-Dwelling (Subaerial Biofilms) → Unclassified → Unclassified → Exposed Rock	0.83%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.83%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	0.83%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	0.83%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Rhizosphere	0.83%
Corn, Switchgrass And Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	0.83%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.83%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere	0.83%
Populus Endosphere	Host-Associated → Plants → Roots → Bulk Soil → Unclassified → Populus Endosphere	0.83%
Miscanthus Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere	0.83%
Ectomycorrhiza	Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza	0.83%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.83%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	0.83%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.83%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000363	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300001305	Grasslands soil microbial communities from Hopland, California, USA	Environmental	Open in IMG/M
3300001686	Grasslands soil microbial communities from Hopland, California, USA	Environmental	Open in IMG/M
3300002568	Grasslands soil microbial communities from Hopland, California, USA - 2	Environmental	Open in IMG/M
3300003308	Avena fatua rhizosphere microbial communities - H4_Rhizo_Litter_20 (Metagenome Metatranscriptome, Counting Only)	Host-Associated	Open in IMG/M
3300004153	Grasslands soil microbial communities from Hopland, California, USA (version 2)	Environmental	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300005171	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_126	Environmental	Open in IMG/M
3300005184	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_120	Environmental	Open in IMG/M
3300005294	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 Bulk Soil	Environmental	Open in IMG/M
3300005331	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG	Host-Associated	Open in IMG/M
3300005340	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG	Environmental	Open in IMG/M
3300005451	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_130	Environmental	Open in IMG/M
3300005454	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_136	Environmental	Open in IMG/M
3300005456	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG	Host-Associated	Open in IMG/M
3300005466	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3L metaG	Environmental	Open in IMG/M
3300005511	Combined assembly of arab plate scrape MF_Col (Combined Assembly)	Host-Associated	Open in IMG/M
3300005543	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG	Host-Associated	Open in IMG/M
3300005548	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG	Host-Associated	Open in IMG/M
3300005718	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2	Host-Associated	Open in IMG/M
3300006034	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_105	Environmental	Open in IMG/M
3300006046	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_101	Environmental	Open in IMG/M
3300006177	Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-2	Host-Associated	Open in IMG/M
3300006358	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2	Host-Associated	Open in IMG/M
3300006800	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109	Environmental	Open in IMG/M
3300006880	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3	Host-Associated	Open in IMG/M
3300006954	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control	Environmental	Open in IMG/M
3300009053	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (3) Depth 19-21cm March2015	Environmental	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300009789	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot28	Environmental	Open in IMG/M
3300010039	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot56	Environmental	Open in IMG/M
3300010040	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot55	Environmental	Open in IMG/M
3300010045	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot61	Environmental	Open in IMG/M
3300011119	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG	Host-Associated	Open in IMG/M
3300011332	Soil microbial communities from California, USA to study soil gas exchange rates - SR-CA-SC2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012021	Terrestrial microbial communites from a soil warming plot in Okalahoma, USA - T1	Environmental	Open in IMG/M
3300012208	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_20_16 metaG	Environmental	Open in IMG/M
3300012212	Combined assembly of Hopland grassland soil	Host-Associated	Open in IMG/M
3300012469	Combined assembly of Soil carbon rhizosphere	Host-Associated	Open in IMG/M
3300012683	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz2.16 metaG	Environmental	Open in IMG/M
3300012924	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012929	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012988	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_242_MG	Environmental	Open in IMG/M
3300013306	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG	Host-Associated	Open in IMG/M
3300013308	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG	Host-Associated	Open in IMG/M
3300014326	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG	Host-Associated	Open in IMG/M
3300014497	Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG	Host-Associated	Open in IMG/M
3300015161	Arctic soil microbial communities from a glacier forefield, Russell Glacier, Kangerlussuaq, Greenland (Sample G1B, Ice margin)	Environmental	Open in IMG/M
3300015242	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300018429	Populus adjacent soil microbial communities from riparian zone of Shoshone River, Wyoming, USA - 504 T	Environmental	Open in IMG/M
3300018468	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111	Environmental	Open in IMG/M
3300018469	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 320 T	Environmental	Open in IMG/M
3300018476	Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 531 T	Environmental	Open in IMG/M
3300018481	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 356 T	Environmental	Open in IMG/M
3300018482	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_118	Environmental	Open in IMG/M
3300018920	Populus adjacent soil microbial communities from riparian zone of Shoshone River, Wyoming, USA - 504 IS	Environmental	Open in IMG/M
3300019361	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S133-311R-2 (version 2)	Environmental	Open in IMG/M
3300019362	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S104-311B-1 (version 2)	Environmental	Open in IMG/M
3300019377	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 112 T	Environmental	Open in IMG/M
3300021953	Barbacenia macrantha exposed rock microbial communities from rupestrian grasslands, the National Park of Serra do Cipo, Brazil - ER_R07	Environmental	Open in IMG/M
3300025901	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4 (SPAdes)	Host-Associated	Open in IMG/M
3300025925	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025926	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025930	Switchgrass rhizosphere bulk soil microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes)	Environmental	Open in IMG/M
3300025937	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025940	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025960	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026312	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_120 (SPAdes)	Environmental	Open in IMG/M
3300027669	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM1_M1 (SPAdes)	Environmental	Open in IMG/M
3300027907	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes)	Host-Associated	Open in IMG/M
3300028379	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300028536	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300030905	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_204 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031058	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_184 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031091	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_355 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031092	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_367 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031094	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_203 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031123	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_196 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031456	Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM	Host-Associated	Open in IMG/M
3300034268	Forest soil microbial communities from Eldorado National Forest, California, USA - SNFC_MG_FRD_1.2	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
ICChiseqgaiiFebDRAFT_137273952	3300000363	Soil	MLETAQSVGLLTILEILGPIVLAGGLVYGIYHSRRRRNHQPPPKPGTIYAQDR*
JGI10216J12902_1024036622	3300000956	Soil	MLDTLQSMGLLTIVEIVGPIVLAAGLIYGIYHSRRRRSQQPAQTRGTVYSQDK*
C688J14111_100024403	3300001305	Soil	MLDTTQGLSLLTLAEIIGPIILGVALIYGIYHSRRRRGAQPPNKSGTVYTQDR*
C688J14111_102088951	3300001305	Soil	MLDTIQSMSLLTIAEIVGPILLGAAFVYGIYHSRRRRSQQPRSTRGTIY
C688J18823_100324673	3300001686	Soil	MLDTTQGLSLLTLAEIIGPIILAVALIYGIYHSRRRRGAQPPNKSGTVYTQDR*
C688J35102_1187650232	3300002568	Soil	MLDTIQSMSLLTIAEIVGPILLGAAFVYGIYHSRRRRSQQPRSTRGTIYAQDNK*
C688J35102_1191887771	3300002568	Soil	TQGLTLLTLAEIVGPIILGVALIYGIYHSRRRRGAQPPSKSGTVYTQDP*
C688J35102_1205690511	3300002568	Soil	KLMLDTTQGLSLLTLAEIIGPIILAVALIYGIYHSRRRRGAQPPNKSGTVYSQDR*
C688J35102_1206453423	3300002568	Soil	MLDTLQSVGLLTAMEILGPILLAAAIVYGIYHSRRRRRGLEPRNTKGTVYAQDRE*
C688J35102_1206838422	3300002568	Soil	MLDTIQGLGLLTIVEIIGPIVLAAAIIYGIYHSRRRRSVPSSKKPGTIYAQDN*
Ga0006777J48905_11733732	3300003308	Avena Fatua Rhizosphere	MLDTLQGLSLLTLMEIVGPILLAAALGYGILRTRRRRSTQPANKKGTVYAQDNN*
Ga0063455_1005954482	3300004153	Soil	TTQGLSLLTLAEIIGPIILGVALIYGIYHSRRRRGAQPPNKSGTVYTQDR*
Ga0063356_1044260341	3300004463	Arabidopsis Thaliana Rhizosphere	MLDTPQGMSLLTVMEIVGPILLAAGLIYGIYHSKRRRSQMPANTKGTTYAQDKE*
Ga0066677_107654601	3300005171	Soil	MLDTIQSLSLLTIAEIVGPILLAAALIYGIYQTRRRRGRQPKPTPGTVYAQDK*
Ga0066671_100501942	3300005184	Soil	MLDTLHSLSLLTLAEIVGPILLAIALIYGIARTRRRRGRQPPPRPGTIYAQDK*
Ga0065705_103259851	3300005294	Switchgrass Rhizosphere	MLETAQSVGLLTILEILGPIVLAGGLVYGIYHSRRRRNHQPPRKPGTIYAQDR*
Ga0070670_1011307221	3300005331	Switchgrass Rhizosphere	MLETLQSMTLLAIAEIIGPILLGAGLIYGIYHSRRSRRTQPESTKGTIYAQDE*
Ga0070689_1008569131	3300005340	Switchgrass Rhizosphere	MLDTTHSLSLLTMAEIVGPILLGVALIYGIVHTRRRRARQPNPTPGTVYAQDK*
Ga0070689_1020136211	3300005340	Switchgrass Rhizosphere	MLDTLQSMSLLTIAEIVGPILLGAGLVYGIYHSRRSRRTQPKDIKGTIYAQD
Ga0066681_109276671	3300005451	Soil	SLSLLTIAEIVGPILLAAALIYGIYQTRRRRGRQPKPTPGTVYAQDK*
Ga0066687_103897922	3300005454	Soil	MLDTIQSLSLLTIAEIVGPILLAAGLIYGIYQTRRRRGRQPKPTPGTVYAQDK*
Ga0070678_1021159001	3300005456	Miscanthus Rhizosphere	MLDTLQSVSLLTIAEIVGPILLGAGLVYGIYHSRRSRRTQPKDIKGTIYAQDT*
Ga0070685_112273121	3300005466	Switchgrass Rhizosphere	MLDTTHSLSLLTIAEIVGPILLGVALIYGIVHTRRRRARQPNPTPGTVYAQDK*
Ga0077121_106179552	3300005511	Arabidopsis Rhizosphere	MLDTVQSVSLLTLVEIVGPVLLAAGLIYGIWHSRRRRSQQPKSKAGTIYAQDD*
Ga0070672_1020889772	3300005543	Miscanthus Rhizosphere	VLDTIQSMSLLTVAEIIGPIVLGAGLVYGIYHSRRRRSQMPPRTKGTIYAQDEK*
Ga0070665_1001880341	3300005548	Switchgrass Rhizosphere	MLDTITSMSLLTVMEIVGPVLLGAALIYGIYHTKRRRSQQPANTKGTVYAQDK*
Ga0070665_1003329921	3300005548	Switchgrass Rhizosphere	MLDTTDSISLLTLAEIIGPIILGAALIYGNYHTKRRRRDQPKDTKGTVYAQDK*
Ga0070665_1009054824	3300005548	Switchgrass Rhizosphere	LDTTDSLSLLTLMEIVGPILLGAALVYGIYHTKRRRRDQPANTKGTVYEQDK*
Ga0068866_106802841	3300005718	Miscanthus Rhizosphere	MLETPSSLSLLTIMEIVGPIVLAAGLIYGIYHSRPRRGAPRNNARTIYTQDK*
Ga0066656_107997922	3300006034	Soil	MLDTFHSLSLLTIAEIIGPILLAIALIYGIARTRRRRGRQPPPRPGTIYAQDK*
Ga0066652_1001820772	3300006046	Soil	MVDTLQSLSLLTLAEIIGPIVLAAGLIYGIYHSRRRRSVQTRNKPGTVYAQDN*
Ga0075362_107248022	3300006177	Populus Endosphere	AVGSLTMLDTNQGISLLTLLEIVAPILLAAALIYGIYHTRRRRREMPKNTKGTVYAQDKD
Ga0068871_1002241194	3300006358	Miscanthus Rhizosphere	MLDTLQSVSLLTIAEIVGPILLGAGLVYGIYHSRRSSRTQPKDIKGTIYAQDT*
Ga0066660_116762921	3300006800	Soil	MLDTIESLSLLTIAEIVGPILLAAALIYGIYQTRRRRGRQPKPTPGTVYAQDKS*
Ga0075429_1008373052	3300006880	Populus Rhizosphere	GLLTILEILGPIVLAGGLVYGIYHSRRRRNHQPPPKPGTIYAQDR*
Ga0079219_105290362	3300006954	Agricultural Soil	MLDTLQGLGLLTAVEIIGPILLALAFIYGIYHSRRRRGLQDRPRPGTVYAQDRE*
Ga0105095_104031133	3300009053	Freshwater Sediment	EIAMLDTLQSVSLLTVAEIVGPIVLALALIYGIYHSRRRRQRSGKPGTIYAQDK*
Ga0111538_104466834	3300009156	Populus Rhizosphere	MLDTLQSVSLLTIAEIVGPILLGAGLVYGIYHSRRSRRAQPKDIKGTIYAQDK*
Ga0126307_106182641	3300009789	Serpentine Soil	MLDTIQSISLLTIAEIVGPILLGAALIYGIYHSRRRRMQQPRSTKGTIYAQDNK*
Ga0126309_100900794	3300010039	Serpentine Soil	MLDTIQSMSLLTIAEIVGPILLGAAFVYGIYHSRRPRSQQPRSTRGTIYAQDNK*
Ga0126308_102586953	3300010040	Serpentine Soil	MLDTIQSMSLLTIAEIVGPILLGAALIYGIYHSRRRRMQQPRSTKGTIYAQDNK*
Ga0126311_100744444	3300010045	Serpentine Soil	MLDTLQSMSLLTLAEIVGPILLGAALIYGIYHSRRRRSRQSKTPGTVYAQDK*
Ga0105246_104263981	3300011119	Miscanthus Rhizosphere	MLDTLQSVSLLTIAEIVGPILLGAGLVYGIYHSRRSRRTQPKDIKGTIYAQDK*
Ga0126317_103499411	3300011332	Soil	LDTIQSMSLLTIAEIVGPILLGAAFVYGIYHSRRRRSQQPRSTRGTIYAQDNK*
Ga0120192_100425552	3300012021	Terrestrial	MLETIQSLSLLTILEIVGPIVLAAALIYGIYHTRRRRSQQPAQKSGTIYAQDQ*
Ga0137376_106429861	3300012208	Vadose Zone Soil	MLDTLQSLSLLTIAEIVGPILLAIALIYGISHTRRRRARQPNPTPGTVYAQDK*
Ga0150985_1008900813	3300012212	Avena Fatua Rhizosphere	MLDTVQSLSLLTLMEIVGPVLLAACLIYGIWHSRRRRSQQPKSKAGTIYAQDD*
Ga0150985_1011376521	3300012212	Avena Fatua Rhizosphere	RCSTRGTAMLDTMQGMGLLTLMEIVGPILLAIALIYGITQTRRNRRREPANTKGTVYAQDDK*
Ga0150985_1083264902	3300012212	Avena Fatua Rhizosphere	MLDTVQGMSLLTLVEIIGPVLLGAGLVYGIWHSRRRRSQQPRSTAGTVYAQDK*
Ga0150985_1140900551	3300012212	Avena Fatua Rhizosphere	MLDTLQAMGLLTVAEIVGPILLGGGLIYGIYHSRRRRSQQPRSTKGTIYAQDKS*
Ga0150985_1164683513	3300012212	Avena Fatua Rhizosphere	MLDTVQGLSLLTLMEIVGPVLLAAGLIYGIWHSRRRRSQQPKSKAGTIYAQDD*
Ga0150985_1194923582	3300012212	Avena Fatua Rhizosphere	MLDTLQSMSLLTVMEILGPIILAAGLIYGIYHSRRRRSRPANTTGTIYTQDP*
Ga0150985_1200150772	3300012212	Avena Fatua Rhizosphere	MLDTLQSVSLLTLIEIVGPVVLAAGLIYGIWHSRRSRSQQPKSKAGTIYAQDE*
Ga0150985_1229274992	3300012212	Avena Fatua Rhizosphere	QGLSLLTLAEIIGPIILGVALIYGIYHSRRRRGAQPPNRSGTVYTQDR*
Ga0150985_1229504461	3300012212	Avena Fatua Rhizosphere	MVDTLQSLSLLTIVEIIGPIVLAAAIAYGIYHSRRRRSGQPRNKSGTIYAQDK*
Ga0150984_1010637562	3300012469	Avena Fatua Rhizosphere	QGLGLLTIVEIIGPIVLAAAIIYGIYHSRRRRSVPSSKKPGTIYAQDN*
Ga0150984_1017678232	3300012469	Avena Fatua Rhizosphere	MLDTVQSLSLLTLMEIVGPVLLAACLIYGIWHSLRRRSQQPKSKAGTIYAQDD*
Ga0150984_1046913082	3300012469	Avena Fatua Rhizosphere	MLDTTQGLSLLTLAEIIGPIILGVALIYGIYHSRRRRGAQPPSKSGTVYTQDR*
Ga0150984_1060647451	3300012469	Avena Fatua Rhizosphere	MLDTIQSISLLTIAEIVGPILLGAAFVYGIYHSRRRRSQQPRSTRGTIYAQDNK*
Ga0150984_1087796741	3300012469	Avena Fatua Rhizosphere	SLLTLMEIVGPILLAAALGYGILRTRRRRSTQPANKKGTVYAQDNN*
Ga0150984_1093801731	3300012469	Avena Fatua Rhizosphere	MLDTSHSLSLLTIAEIVGPILLAIALIYGIARTRRRRGRQPPPRPGTIYAQDK*
Ga0150984_1115263111	3300012469	Avena Fatua Rhizosphere	MVDTLQSLSLLTIVEIIGPVVLAAAIAYGIYHSRRRRSVRPRNKAGTVYAQDK*
Ga0150984_1179292522	3300012469	Avena Fatua Rhizosphere	LMLDTTESLSLLTLAEIIGPILLAAALIYGIYHSRRSRRTEPRNTQGTIYAQDHEEGR*
Ga0150984_1202673731	3300012469	Avena Fatua Rhizosphere	PMLDTLHSLSLLTLAEIVGPILLAIALIYGIARTRRRRGRQPPPRPGTIYAQDK*
Ga0137398_101567261	3300012683	Vadose Zone Soil	MLDTIQAVSLLTLAEIVGPVLLAVGLVYGIWHSRRRRSQQPKSTAGTIYAQDK*
Ga0137413_107487203	3300012924	Vadose Zone Soil	MLDTLQSVSLLTLMEVVGPILLAAALAYGIYQTRRRRGTQPANKKGTVYAQDDR*
Ga0137413_107777602	3300012924	Vadose Zone Soil	MLDTIQGVSLLTLVEIVGPVLLAVGLVYGIWHSRRRRSQQPKSTAGTIYAQDK*
Ga0137404_104208553	3300012929	Vadose Zone Soil	MLDTAQGISLLTMMEIIGPILLAAVLIYGIYHSRRRRDQQPQSTKGTVYSQDRNS*
Ga0164306_108078981	3300012988	Soil	MLDTMQGLGLLTIIEIIGPIVLAAAIVYGIYHSRRRRSVPPSEKPGTIYAQDN*
Ga0163162_128436901	3300013306	Switchgrass Rhizosphere	MLDTLQSMSLLTIAEIVGPILLGAGLVYGIYYSRRSRRTQPKDIKGTIYAQDLRAP
Ga0157375_127182751	3300013308	Miscanthus Rhizosphere	SLSLLTIMEIAGPIVLAAGLIYGIYHSRRRRGAPRNNARTIYTQDK*
Ga0157380_108540321	3300014326	Switchgrass Rhizosphere	PMLDTLQSVSLLTIAEIVGPILLGAGLVYGIYHSRRSRRTQPKDIKGTIYAQDT*
Ga0157380_111814522	3300014326	Switchgrass Rhizosphere	MLETLQSMTLLTIAEIIGPILLGAGLIYGIYHSRRSRRTQPESTKGTIYAQDE*
Ga0157380_114268701	3300014326	Switchgrass Rhizosphere	MLETVQSMSLLTLAEIVGPILLGAGLVYGIYHSRRRRSQMPRSTKGTVYAQDEK*
Ga0182008_107838741	3300014497	Rhizosphere	MLDTLQGLGLLTIAEIIGPIVLAIVLIYGIYHSRRRRGLQPRGKPGTIYAQDNTRD*
Ga0167623_100079113	3300015161	Glacier Forefield Soil	MLDTIQSVSLLTIAEIVGPILLAAGLIYGIYHSRRRRAQQPKTPGTVYAQDK*
Ga0137412_101972093	3300015242	Vadose Zone Soil	MLDTLQSVSLLTLMEVVGPILLAAALAYGIYQTRRRRGTQPANKKGTVYAQDD*
Ga0137412_102276381	3300015242	Vadose Zone Soil	GGHVMLDTAQAISLLTMMEIVGPILLAAVLIYGIYHSRRRRNQQPKSTKGTVYSQDRDS*
Ga0132255_1026229302	3300015374	Arabidopsis Rhizosphere	MLDTLQGLSLLTLVEIIGPIVLAAAIVYGIYHSRRQRRTRACQESGTIYAQDR*
Ga0190272_100432952	3300018429	Soil	MLETLQSVSLLTLAEIVGPILLAGGLIYGIYHSRRPRRSQPKSTEGTIYAQDK
Ga0066662_103537342	3300018468	Grasslands Soil	MLDTLQSLSLLTIAEIVGPVLLAIGLIYGISRTRRRRGRQPPPTPGTVYAQDK
Ga0066662_105255392	3300018468	Grasslands Soil	MLDTFQGISLLTLAEIVGPILLAAGLVYGIWHSRRRRSQQPKSTAGTVYAQDD
Ga0066662_117934372	3300018468	Grasslands Soil	MLDTLQGLGLLTVVEIVGPIVLAAAIVYGIYHSRRRRSVPPNKKAGTIYAQDS
Ga0066662_124298402	3300018468	Grasslands Soil	MLDTIQSLSLLTIAEIVGPILLAIALIYGISRTRRRRGRQPPPTPGTIYA
Ga0190270_130246212	3300018469	Soil	MLETVQSMSLLTLAEIVGPILLGAGLVYGIYHSRRRRSQMPRSTKGTVYAQDEK
Ga0190274_137724801	3300018476	Soil	MLETVQSMSLLTLAEIVGPILLGAGLVYGIYHSRPGRSQMPRSTKGTVYAQDEK
Ga0190271_103112362	3300018481	Soil	MLETLQSLSLLTMMEIIGPILLAAALIYGIYHSRRRRRNGPKSSKAGTIYAQDN
Ga0190271_105007632	3300018481	Soil	MLETVQSMSLLTLAEIVGPILLAAGLVYGIYHSRRRRREMPRETKGTVYAQDEK
Ga0066669_117558582	3300018482	Grasslands Soil	MLDTLQSLSLLTIAEIVGPILLAIALIYGITHTRRRRARQPDPTPGTVYAQDK
Ga0190273_106504663	3300018920	Soil	MLDTIQSVSLLTIAEIVGPILLAAGLIYGIYHSRRRRAQQPKTPGTVYAQDK
Ga0173482_104651572	3300019361	Soil	MLDTLQGLSLLTLVEIIGPIVLAAAIVYGIYHSRRQRRTRARQESGTIYAQDR
Ga0173479_100298702	3300019362	Soil	MLDTLQSVSLLTIAEIVGPILLGAGLVYGIYHSRRSRRTQPKDIKGTIYAQDT
Ga0190264_120848071	3300019377	Soil	MLETLQSVSLLTLAEIVGPILLAGGLIYGIYHSRRPRRSQPKSTEG
Ga0213880_102117952	3300021953	Exposed Rock	PAAQRIEGKAMLDTMQGMSLLTVMEIVGPIILAAALIYGIYHSRRRRGRPARTAGTVYTQDR
Ga0207688_108140961	3300025901	Corn, Switchgrass And Miscanthus Rhizosphere	MLDTLQSVSLLTIAEIVGPILLGAGLVYGIYHSRRSRRTLPKDIKGTIYAQDK
Ga0207650_103797122	3300025925	Switchgrass Rhizosphere	MLETLQSMTLLAIAEIIGPILLGAGLIYGIYHSRRSRRTQPESTKGTIYAQDE
Ga0207659_108666482	3300025926	Miscanthus Rhizosphere	MLDTLQSVSLLTIAEIVGPILLGAGLVYGIYHSRRSSRTQPKDIKGTIYAQDT
Ga0207659_114668172	3300025926	Miscanthus Rhizosphere	MLETLQSMTLLTIAEIIGPILLGAGLIYGIYHSRRSRRTQPESTKGTIYAQDE
Ga0207701_100420956	3300025930	Corn, Switchgrass And Miscanthus Rhizosphere	MLDTLQSVSLLTIAEIVGPILLGAGLVYGIYHSRRSRRTQPKDIKGTIYAQDK
Ga0207701_111687782	3300025930	Corn, Switchgrass And Miscanthus Rhizosphere	MLETSQSVGLLTILEILGPIVLAGGLVYGIYHSRRRRNHQPPPKPGTIYAQ
Ga0207669_115013652	3300025937	Miscanthus Rhizosphere	MLDTLQSLSLLTIAEIVGPIMLGAGLVYGIYHSRRSRRTQPKDIKGTIYAQDT
Ga0207691_115064762	3300025940	Miscanthus Rhizosphere	VLDTIQSMSLLTVAEIIGPIVLGAGLVYGIYHSRRRRSQMPPRTKGTIYAQDEK
Ga0207651_108695482	3300025960	Switchgrass Rhizosphere	MLDTLQSVSLLTIAEIVGPILLGAGLVYGIYHSRGSRRTQPKDIKGTIYAQDK
Ga0209153_10375611	3300026312	Soil	MLDTLHSLSLLTLAEIVGPILLAIALIYGIARTRRRRGRQPPPRPGTIYAQDK
Ga0208981_11608692	3300027669	Forest Soil	MLDTLQSVSLLTLMEIVGPILLAAALAYGIYQTRRRRGTQPANKKGTVYAQDD
Ga0207428_102978851	3300027907	Populus Rhizosphere	MLETAQSVGLLTILEILGPIVLAGGLVYGIYHSRRRRNHQPPPKPGTIYAQDR
Ga0268266_109817062	3300028379	Switchgrass Rhizosphere	MLDTTDSLSLLTLMEIVGPILLGAALVYGIYHTKRRRRDQPANTKGTVYEQDK
Ga0268266_118555341	3300028379	Switchgrass Rhizosphere	MLDTITSMSLLTVMEIVGPVLLGAALIYGIYHTKRRRSQQPANTKGTVYAQDK
Ga0137415_105574531	3300028536	Vadose Zone Soil	MLDTIQAVSLLTLAEIVGPVLLAVGLVYGIWHSRRRRSQQPKSTAGTIYAQDK
Ga0308200_10389953	3300030905	Soil	VMLDTLQSVGLLTAMEILGPILLAAAIVYGIYHSRRRRRGLEPRNTKGTVYAQDRE
Ga0308200_11407782	3300030905	Soil	MLDTVQSLSLLTMMEIVGPVLLAAGLIYGIWHSRRRRSQQPKSKAGTIYAQDD
Ga0308189_101317133	3300031058	Soil	PPMLDTLHSVSLLTVMEIVGPILLAAAIVYGIYHSRRRRSLEPKNTKGTVYAQDRE
Ga0308189_102574762	3300031058	Soil	MLDTVQGLSLLTLMEIVGPLLLAAGLIYGIWHSRRRRSQQPKSKAGTIYAQDD
Ga0308189_105313431	3300031058	Soil	MLDTVQSMSLLTIAEIVGPILLGAAIVYGIYHSRRRRSQQPRSTRGTIYAQDK
Ga0308201_102407242	3300031091	Soil	AMLDTLQSVGLLTAMEILGPILLAAAIVYGIYHSRRRRRGLEPKNTKGTVYAQDRE
Ga0308201_103188271	3300031091	Soil	LQSVGLLTAMEILGPILLAAAIVYGIYHSRRRRRGLEPRNTKGTVYAQDRE
Ga0308204_102668022	3300031092	Soil	QSVGLLTAMEILGPILLAAAIVYGIYHSRRRRRGLEPRNTKGTVYAQDRE
Ga0308199_10658883	3300031094	Soil	VMLDTLQSVGLLTAMEILGPILLAAAIVYGIYHSRRRRRGLEPKNTKGTVYAQDRE
Ga0308195_10384882	3300031123	Soil	TPMLDTLHSVSLLTVMEIVGPILLAAAIVYGIYHSRRRRSLEPKNTKGTVYAQDRE
Ga0307513_106263761	3300031456	Ectomycorrhiza	MLDTVQSLSLLTMMEIVGPIVLAIGLIYGIYHGRRRSQQPKSTKGTVYSQDRNG
Ga0372943_0555430_589_750	3300034268	Soil	MLDTLQSVGLLTAMEILGPILLAAAIVYGIYHSRRRRRGLEPRNTKGTVYAQDR

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F072533

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences