Metagenome Family F072508

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F072508
Family Type	Metagenome
Number of Sequences	121
Average Sequence Length	77 residues
Representative Sequence	MLEILSLAACGWLLMHNPTENLRLPITEWEQSLAFDTAAECETFIATRWVKAEKEHDEFKLERYRCVPADAVYPHTQPKK
Number of Associated Samples	69
Number of Associated Scaffolds	121

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	81.82 %
% of genes near scaffold ends (potentially truncated)	26.45 %
% of genes from short scaffolds (< 2000 bps)	85.12 %
Associated GOLD sequencing projects	62
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.53

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (62.810 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil (30.578 % of family members)
Environment Ontology (ENVO)	Unclassified (61.983 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (60.331 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 25.93% β-sheet: 13.89% Coil/Unstructured: 60.19%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.53
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.53
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 121 Family Scaffolds
PF02735	Ku	5.79
PF02265	S1-P1_nuclease	1.65
PF00254	FKBP_C	1.65
PF00072	Response_reg	0.83
PF09084	NMT1	0.83
PF00805	Pentapeptide	0.83
PF04392	ABC_sub_bind	0.83
PF13884	Peptidase_S74	0.83
PF02586	SRAP	0.83
PF13229	Beta_helix	0.83
PF00691	OmpA	0.83
PF08450	SGL	0.83
PF13683	rve_3	0.83
PF10458	Val_tRNA-synt_C	0.83

COG ID	Name	Functional Category	% Frequency in 121 Family Scaffolds
COG1273	Non-homologous end joining protein Ku, dsDNA break repair	Replication, recombination and repair [L]	5.79
COG0715	ABC-type nitrate/sulfonate/bicarbonate transport system, periplasmic component	Inorganic ion transport and metabolism [P]	0.83
COG1357	Uncharacterized conserved protein YjbI, contains pentapeptide repeats	Function unknown [S]	0.83
COG2135	ssDNA abasic site-binding protein YedK/HMCES, SRAP family	Replication, recombination and repair [L]	0.83
COG2984	ABC-type uncharacterized transport system, periplasmic component	General function prediction only [R]	0.83
COG3386	Sugar lactone lactonase YvrE	Carbohydrate transport and metabolism [G]	0.83
COG3391	DNA-binding beta-propeller fold protein YncE	General function prediction only [R]	0.83
COG4521	ABC-type taurine transport system, periplasmic component	Inorganic ion transport and metabolism [P]	0.83

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	62.81 %
All Organisms	root	All Organisms	37.19 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	62.81 %
cellular organisms	root	All Organisms → cellular organisms	37.19 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	62.81 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	37.19 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	62.81 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	5.79 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	5.79 %
Bacteria incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis	0.83 %
unclassified Bacteria	no rank	All Organisms → cellular organisms → Bacteria → unclassified Bacteria	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	62.81 %
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	5.79 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	4.96 %
bacterium	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	0.83 %
Bacteria candidate phyla	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	62.81 %
unclassified Verrucomicrobia	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia	5.79 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	4.96 %
bacterium	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	0.83 %
Bacteria candidate phyla	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	62.81 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	5.79 %
unclassified Deltaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria	4.96 %
bacterium	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	0.83 %
Bacteria candidate phyla	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	62.81 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	5.79 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	4.96 %
bacterium	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	0.83 %
Bacteria candidate phyla	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	0.83 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000597\|AF_2010_repII_A1DRAFT_10103228	Not Available	702	Open in IMG/M
3300000793\|AF_2010_repII_A001DRAFT_10093307	Not Available	637	Open in IMG/M
3300002099\|JGI24808J26613_1042337	Not Available	625	Open in IMG/M
3300002100\|JGI24809J26612_1027433	Not Available	943	Open in IMG/M
3300003373\|JGI25407J50210_10161037	Not Available	553	Open in IMG/M
3300003911\|JGI25405J52794_10001652	All Organisms → cellular organisms → Bacteria	3705	Open in IMG/M
3300003911\|JGI25405J52794_10002126	Not Available	3370	Open in IMG/M
3300004479\|Ga0062595_100285947	All Organisms → cellular organisms → Bacteria	1099	Open in IMG/M
3300004633\|Ga0066395_10211037	Not Available	1022	Open in IMG/M
3300005289\|Ga0065704_10023887	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1102	Open in IMG/M
3300005289\|Ga0065704_10572520	Not Available	621	Open in IMG/M
3300005294\|Ga0065705_10167412	Not Available	1716	Open in IMG/M
3300005294\|Ga0065705_10795492	Not Available	612	Open in IMG/M
3300005295\|Ga0065707_10031939	Not Available	1360	Open in IMG/M
3300005332\|Ga0066388_100033279	All Organisms → cellular organisms → Bacteria	4909	Open in IMG/M
3300005332\|Ga0066388_101019377	Not Available	1389	Open in IMG/M
3300005332\|Ga0066388_101487601	All Organisms → cellular organisms → Bacteria	1183	Open in IMG/M
3300005332\|Ga0066388_101605905	All Organisms → cellular organisms → Bacteria	1145	Open in IMG/M
3300005332\|Ga0066388_102315619	Not Available	972	Open in IMG/M
3300005332\|Ga0066388_103369479	Not Available	816	Open in IMG/M
3300005332\|Ga0066388_105406292	Not Available	647	Open in IMG/M
3300005332\|Ga0066388_107368058	Not Available	552	Open in IMG/M
3300005332\|Ga0066388_107758315	Not Available	537	Open in IMG/M
3300005332\|Ga0066388_107923902	Not Available	531	Open in IMG/M
3300005332\|Ga0066388_108546780	Not Available	509	Open in IMG/M
3300005332\|Ga0066388_108790007	Not Available	501	Open in IMG/M
3300005445\|Ga0070708_100967076	All Organisms → cellular organisms → Bacteria	799	Open in IMG/M
3300005713\|Ga0066905_100045975	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	2632	Open in IMG/M
3300005713\|Ga0066905_100535540	All Organisms → cellular organisms → Bacteria	980	Open in IMG/M
3300005713\|Ga0066905_101083760	Not Available	710	Open in IMG/M
3300005713\|Ga0066905_101809768	All Organisms → cellular organisms → Bacteria	563	Open in IMG/M
3300005713\|Ga0066905_102160323	Not Available	519	Open in IMG/M
3300005764\|Ga0066903_100801855	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1684	Open in IMG/M
3300005764\|Ga0066903_103095730	Not Available	900	Open in IMG/M
3300005764\|Ga0066903_104068223	Not Available	783	Open in IMG/M
3300005764\|Ga0066903_105754574	Not Available	651	Open in IMG/M
3300005937\|Ga0081455_10000440	All Organisms → cellular organisms → Bacteria	54606	Open in IMG/M
3300005981\|Ga0081538_10017044	All Organisms → cellular organisms → Bacteria	5536	Open in IMG/M
3300006049\|Ga0075417_10570309	Not Available	574	Open in IMG/M
3300006194\|Ga0075427_10084853	Not Available	576	Open in IMG/M
3300006844\|Ga0075428_100196992	All Organisms → cellular organisms → Bacteria	2178	Open in IMG/M
3300006844\|Ga0075428_101239417	Not Available	786	Open in IMG/M
3300006845\|Ga0075421_100192350	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	2530	Open in IMG/M
3300006846\|Ga0075430_100094482	All Organisms → cellular organisms → Bacteria	2499	Open in IMG/M
3300006847\|Ga0075431_100657854	Not Available	1028	Open in IMG/M
3300006852\|Ga0075433_11116050	Not Available	686	Open in IMG/M
3300006854\|Ga0075425_100801087	Not Available	1080	Open in IMG/M
3300006854\|Ga0075425_102269337	Not Available	604	Open in IMG/M
3300006854\|Ga0075425_102492425	Not Available	573	Open in IMG/M
3300006880\|Ga0075429_100991255	Not Available	735	Open in IMG/M
3300006969\|Ga0075419_10195268	Not Available	1338	Open in IMG/M
3300007076\|Ga0075435_100300948	Not Available	1372	Open in IMG/M
3300009100\|Ga0075418_10444071	Not Available	1390	Open in IMG/M
3300009156\|Ga0111538_11568320	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	830	Open in IMG/M
3300009157\|Ga0105092_10243160	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1010	Open in IMG/M
3300009162\|Ga0075423_11235694	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	798	Open in IMG/M
3300009792\|Ga0126374_10190336	Not Available	1288	Open in IMG/M
3300009792\|Ga0126374_11733277	Not Available	520	Open in IMG/M
3300010043\|Ga0126380_10373815	Not Available	1047	Open in IMG/M
3300010043\|Ga0126380_10617863	Not Available	857	Open in IMG/M
3300010043\|Ga0126380_10706177	Not Available	811	Open in IMG/M
3300010043\|Ga0126380_12053290	Not Available	524	Open in IMG/M
3300010046\|Ga0126384_10006047	All Organisms → cellular organisms → Bacteria	7397	Open in IMG/M
3300010046\|Ga0126384_10081951	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	2327	Open in IMG/M
3300010046\|Ga0126384_10175634	Not Available	1673	Open in IMG/M
3300010046\|Ga0126384_10380605	All Organisms → cellular organisms → Bacteria	1186	Open in IMG/M
3300010047\|Ga0126382_10022266	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	3324	Open in IMG/M
3300010047\|Ga0126382_10195967	All Organisms → cellular organisms → Bacteria	1432	Open in IMG/M
3300010047\|Ga0126382_10363110	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1115	Open in IMG/M
3300010047\|Ga0126382_10486995	Not Available	988	Open in IMG/M
3300010047\|Ga0126382_10511191	Not Available	968	Open in IMG/M
3300010047\|Ga0126382_11421886	Not Available	634	Open in IMG/M
3300010047\|Ga0126382_11704303	Not Available	589	Open in IMG/M
3300010358\|Ga0126370_10718216	All Organisms → cellular organisms → Bacteria	880	Open in IMG/M
3300010359\|Ga0126376_10283258	Not Available	1431	Open in IMG/M
3300010360\|Ga0126372_10206345	All Organisms → cellular organisms → Bacteria	1642	Open in IMG/M
3300010361\|Ga0126378_10598020	Not Available	1217	Open in IMG/M
3300010361\|Ga0126378_11260079	Not Available	836	Open in IMG/M
3300010362\|Ga0126377_10244852	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	1743	Open in IMG/M
3300010362\|Ga0126377_10546700	Not Available	1196	Open in IMG/M
3300010362\|Ga0126377_12385683	All Organisms → cellular organisms → Bacteria	605	Open in IMG/M
3300010362\|Ga0126377_13303506	Not Available	521	Open in IMG/M
3300010366\|Ga0126379_11879010	All Organisms → cellular organisms → Bacteria	702	Open in IMG/M
3300010376\|Ga0126381_100613746	Not Available	1548	Open in IMG/M
3300010376\|Ga0126381_101302702	Not Available	1050	Open in IMG/M
3300010376\|Ga0126381_101885821	Not Available	862	Open in IMG/M
3300010398\|Ga0126383_10595461	All Organisms → cellular organisms → Bacteria	1176	Open in IMG/M
3300010398\|Ga0126383_13347085	Not Available	524	Open in IMG/M
3300010868\|Ga0124844_1194546	Not Available	745	Open in IMG/M
3300010868\|Ga0124844_1233188	Not Available	657	Open in IMG/M
3300012022\|Ga0120191_10069167	Not Available	663	Open in IMG/M
3300012922\|Ga0137394_10127326	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	2158	Open in IMG/M
3300012929\|Ga0137404_10095418	All Organisms → cellular organisms → Bacteria → Proteobacteria	2388	Open in IMG/M
3300012930\|Ga0137407_10207678	All Organisms → cellular organisms → Bacteria	1760	Open in IMG/M
3300012948\|Ga0126375_10126900	Not Available	1567	Open in IMG/M
3300012948\|Ga0126375_10979915	Not Available	686	Open in IMG/M
3300012948\|Ga0126375_11222074	Not Available	627	Open in IMG/M
3300015264\|Ga0137403_10247820	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1693	Open in IMG/M
3300018028\|Ga0184608_10056700	All Organisms → cellular organisms → Bacteria	1557	Open in IMG/M
3300018052\|Ga0184638_1005900	All Organisms → cellular organisms → Bacteria	4002	Open in IMG/M
3300018054\|Ga0184621_10081970	Not Available	1123	Open in IMG/M
3300018084\|Ga0184629_10319803	Not Available	817	Open in IMG/M
3300019886\|Ga0193727_1024239	All Organisms → cellular organisms → Bacteria	2137	Open in IMG/M
3300021344\|Ga0193719_10307949	Not Available	664	Open in IMG/M
3300021560\|Ga0126371_11820075	Not Available	730	Open in IMG/M
3300021560\|Ga0126371_13087456	All Organisms → cellular organisms → Bacteria	563	Open in IMG/M
3300022756\|Ga0222622_10584244	Not Available	805	Open in IMG/M
3300027646\|Ga0209466_1000678	All Organisms → cellular organisms → Bacteria	6899	Open in IMG/M
3300027646\|Ga0209466_1021048	Not Available	1356	Open in IMG/M
3300027654\|Ga0209799_1022486	Not Available	1385	Open in IMG/M
3300027654\|Ga0209799_1050369	All Organisms → cellular organisms → Bacteria	931	Open in IMG/M
3300027654\|Ga0209799_1101088	Not Available	654	Open in IMG/M
3300027873\|Ga0209814_10546480	Not Available	515	Open in IMG/M
3300027874\|Ga0209465_10465279	Not Available	632	Open in IMG/M
3300027880\|Ga0209481_10400427	Not Available	704	Open in IMG/M
3300031720\|Ga0307469_10854385	Not Available	839	Open in IMG/M
3300031720\|Ga0307469_11608369	Not Available	624	Open in IMG/M
3300031740\|Ga0307468_100032071	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	2519	Open in IMG/M
3300032174\|Ga0307470_10426238	All Organisms → cellular organisms → Bacteria	946	Open in IMG/M
3300032180\|Ga0307471_100547581	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1311	Open in IMG/M
3300032205\|Ga0307472_100297758	All Organisms → cellular organisms → Bacteria	1294	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	78.51%
Host-Associated	Host-Associated	21.49%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	73.55%
Plants	Host-Associated → Plants	21.49%
Aquatic	Environmental → Aquatic	4.96%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	73.55%
Rhizosphere	Host-Associated → Plants → Rhizosphere	15.70%
Sediment	Environmental → Aquatic → Sediment	4.13%
Rhizoplane	Host-Associated → Plants → Rhizoplane	4.13%
Roots	Host-Associated → Plants → Roots	1.65%
Freshwater	Environmental → Aquatic → Freshwater	0.83%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	47.93%
Loam	Environmental → Terrestrial → Soil → Loam	25.62%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	15.70%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	4.13%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	2.48%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	1.65%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	1.65%
Sediment	Environmental → Aquatic → Freshwater → Sediment	0.83%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	40.50%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	24.79%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	15.70%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	6.61%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	4.13%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	2.48%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	1.65%
Unclassified	Host-Associated → Plants → Roots → Rhizosphere → Unclassified	1.65%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	0.83%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.83%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	0.83%

Habitat	Taxonomy	Distribution
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	30.58%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	24.79%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	15.70%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	4.96%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	3.31%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	3.31%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere	2.48%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere	2.48%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.65%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.65%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	1.65%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Switchgrass Rhizosphere	1.65%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Unclassified → Tabebuia Heterophylla Rhizosphere	1.65%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment	0.83%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.83%
Terrestrial	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial	0.83%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.83%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	0.83%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000597	Forest soil microbial communities from Amazon forest - 2010 replicate II A1	Environmental	Open in IMG/M
3300000793	Forest soil microbial communities from Amazon forest - 2010 replicate II A001	Environmental	Open in IMG/M
3300002099	Soil microbial communities from Manhattan, Kansas, USA - Sample 400um MDA	Environmental	Open in IMG/M
3300002100	Soil microbial communities from Manhattan, Kansas, USA - Sample 500um MDA	Environmental	Open in IMG/M
3300003373	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1	Host-Associated	Open in IMG/M
3300003911	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1	Host-Associated	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300004633	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio	Environmental	Open in IMG/M
3300005289	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2	Host-Associated	Open in IMG/M
3300005294	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 Bulk Soil	Environmental	Open in IMG/M
3300005295	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL3	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005445	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG	Environmental	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005937	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1	Host-Associated	Open in IMG/M
3300005981	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1	Host-Associated	Open in IMG/M
3300006049	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1	Host-Associated	Open in IMG/M
3300006194	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1	Host-Associated	Open in IMG/M
3300006844	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2	Host-Associated	Open in IMG/M
3300006845	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5	Host-Associated	Open in IMG/M
3300006846	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4	Host-Associated	Open in IMG/M
3300006847	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5	Host-Associated	Open in IMG/M
3300006852	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2	Host-Associated	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006880	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3	Host-Associated	Open in IMG/M
3300006969	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD3	Host-Associated	Open in IMG/M
3300007076	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4	Host-Associated	Open in IMG/M
3300009100	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2	Host-Associated	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300009157	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 19-21cm March2015	Environmental	Open in IMG/M
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated	Open in IMG/M
3300009792	Tropical forest soil microbial communities from Panama - MetaG Plot_12	Environmental	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300010868	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (PacBio error correction)	Environmental	Open in IMG/M
3300012022	Terrestrial microbial communites from a soil warming plot in Okalahoma, USA - C6	Environmental	Open in IMG/M
3300012922	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk1.16 metaG	Environmental	Open in IMG/M
3300012929	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012930	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012948	Tropical forest soil microbial communities from Panama - MetaG Plot_14	Environmental	Open in IMG/M
3300015264	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300018028	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_30_coex	Environmental	Open in IMG/M
3300018052	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_50_b2	Environmental	Open in IMG/M
3300018054	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_30_b1	Environmental	Open in IMG/M
3300018084	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_32_b1	Environmental	Open in IMG/M
3300019886	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2c2	Environmental	Open in IMG/M
3300021344	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U2a2	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300022756	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5_b1	Environmental	Open in IMG/M
3300027646	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 30 MoBio (SPAdes)	Environmental	Open in IMG/M
3300027654	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 MoBio (SPAdes)	Environmental	Open in IMG/M
3300027873	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1 (SPAdes)	Host-Associated	Open in IMG/M
3300027874	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio (SPAdes)	Environmental	Open in IMG/M
3300027880	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD3 (SPAdes)	Host-Associated	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300031740	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05	Environmental	Open in IMG/M
3300032174	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_05	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
AF_2010_repII_A1DRAFT_101032282	3300000597	Forest Soil	MLEILSLAACGWLLMHNPTENLRLSITEWEQSLAFDTAAECETFIATRWVKAEKEHDEFKLERYRCVPTDAVYPHTQPKK*
AF_2010_repII_A001DRAFT_100933071	3300000793	Forest Soil	MLDIPSLAACGWLLMYNPTENPKLPITEWEQSLAFDTAAECETFIATRWVKAEKEHREFKLERYKCVPADVVYPPRK*
JGI24808J26613_10423371	3300002099	Soil	MLEIPSLAACGWLLMYNPAENLKLPITEWEQSLAFDTAAECETFIATRWVKTEKEHREFKLERYRCVPADVVYPRRK*
JGI24809J26612_10274331	3300002100	Soil	MLEIFSLAACGWLLMHNPTENVRLPITEWEQSLAFDTAVECETFIATRWVKEEKEHREFKLERYRCVPSDAVYPPMSPKK*
JGI25407J50210_101610371	3300003373	Tabebuia Heterophylla Rhizosphere	MLEIPALAACGWLLMYNPTENAKLPITEWEQSLAFDTAAECETFIATRWVKAEKEHREFKLERYRCV
JGI25405J52794_100016522	3300003911	Tabebuia Heterophylla Rhizosphere	MLEILSLAACGWLLMHNPTEDLRLPITEWEQSFDTAAECETFIATRWVKAEKEHRDFKLERYRCVPSDAVYPHTQPKNKTIVTS*
JGI25405J52794_100021266	3300003911	Tabebuia Heterophylla Rhizosphere	MLAILSLAACGWLLMHNPTADLKLPITEWEQSLAFDSAAECETFIATRWLKAEKEHEDFKLERYRCVPSDAVYPXTQPKK*
Ga0062595_1002859473	3300004479	Soil	MLEIASLAACGWLLMYNPTENLKLPITEWEQSLAFDTAAECETFIATRWVKAEKEHSEFKLERYRCVPADAVYPHITPKK*
Ga0066395_102110371	3300004633	Tropical Forest Soil	MLEIFSLAACGWLLMHNPTEDLRLPITEWEQSLAFDTAAECETFIATRWVKAEKEHDDFKLERYKCVPSDAVYPPTQPKK*
Ga0065704_100238872	3300005289	Switchgrass Rhizosphere	MLEILSLAACGWLLMHNPTENLRLPITEWEQSLAFDTAAECEIFIATRWAKAEKEHDEFKLERYRCVPADAVYPHVTPRK*
Ga0065704_105725202	3300005289	Switchgrass Rhizosphere	MLEIASLAACGWLLMHNPTENLRLPITEWEQSLAFDTAAECETFIATRWVKAEKENREFKLERYRCVPADVVYPHMTPRK*
Ga0065705_101674121	3300005294	Switchgrass Rhizosphere	MLEIPALAACGWLLMHNPTENLKLPITEWEQSLAFDTAVECETFIATRWVKEEKEHREFKLERYRCVPAD
Ga0065705_107954921	3300005294	Switchgrass Rhizosphere	MYNPTENLRLPITEWEQSLAFDTAAECETFIAMRWVKAEKENREFKLERYRCVPADVVYPNMTPRK*
Ga0065707_100319391	3300005295	Switchgrass Rhizosphere	MLEIASLAACGWLLMXNPTENLRLPITEWEQSLAFDTAAECETFIAMRWVKAEKENREFKLERYRCVPADVVYPNMTPRK*
Ga0066388_1000332794	3300005332	Tropical Forest Soil	MHNPTENLRLSITEWEQSLAFDTAAECETFIATRWVKAEKEHDEFKLQRYRCVPTDAVYPHTQPKK*
Ga0066388_1010193774	3300005332	Tropical Forest Soil	FFMLEIPALAACGWLLMLNPTENLKLPISEWEQSLAFDTAAECETFIATRWVKAEKEHRDFKLERYKCVPADVVYPPRK*
Ga0066388_1014876013	3300005332	Tropical Forest Soil	MLEILSLAACGWLLMHNPTENLRLSITEWEQSLAFDTAAECETFVATRWVKAEKEHDEFQLERYRCVPADAVYPQMTPKK*
Ga0066388_1016059051	3300005332	Tropical Forest Soil	MLEIPTLAACGWLLMHNPTENLRLPITEWEQSLAFDTAAECETFIATRWVKAEKEHREFKLERYKCVPANTVYPHITPKK*
Ga0066388_1023156191	3300005332	Tropical Forest Soil	MLEIFSLAACGWLLMHNPTEDLKLPITEWDQSLAFDTAAECETFIATRWVTAEKEHREFKLERYKCVPSDAVYPATQPKK*
Ga0066388_1033694792	3300005332	Tropical Forest Soil	MLDIPSLAACGWLLMYNPTENPKLPITEWEQSLAFDTAAECETFIATRWVKAEKEHREFKLEHYKCVPADAVYPHITPKK*
Ga0066388_1054062921	3300005332	Tropical Forest Soil	MLEIPTLAVCGWLLMHNPTENLKLPITEWEQSLAFDTAAECETFIATRWVKAEKEHDEFKLERYRCVPADAVYPHTQ
Ga0066388_1073680582	3300005332	Tropical Forest Soil	MLEIFSLAACGWLLMHNPTEDLKLPITEWEQSLAFDTAAECETFIATRWVKAEKEHDDFKLERYKCVPSDAVYPPTQPKK*
Ga0066388_1077583151	3300005332	Tropical Forest Soil	EIFSLAACGWLLMHNPTEDLRLPITEWEQSLAFDTAAECETFIATRWVKAEKEHDDFKLERYRCVPSDAVYPPTQPKK*
Ga0066388_1079239021	3300005332	Tropical Forest Soil	ILSLAACGWLLMHNPTENLRLPITEWEQSLAFDTAAECETFIATRWVKAEKEHDEFKLERYRCVPTDAVYPHTQPKK*
Ga0066388_1085467801	3300005332	Tropical Forest Soil	MNRGFYARIFSLAAYGWLLMHNPTEDLKLPITEWEQSLAFDTAAECETFIATRWVKAEKEHSEFKLERYKCVPADAVYPHMTPGK*
Ga0066388_1087900071	3300005332	Tropical Forest Soil	MLEIPALAACGWLLMHNPTENLKLPITEWEQSLAFDTAAECETFIATRWVKAEKEHREFKLERYRCVPADAVYPHTQPRK*
Ga0070708_1009670761	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	MLEIAPLAACGWLLMYNPTENLKLPITEWEQSLAFDTAAECETFIATRWVKAEKEHREFKLERYRCVPADAVYPLTPKK*
Ga0066905_1000459752	3300005713	Tropical Forest Soil	MLEIPALAACGWLLMLNPTENLKLPISEWEQSLAFDTAAECETFIATRWVKAEKEHRDFKLERYKCVPADVVYPPRK*
Ga0066905_1005355402	3300005713	Tropical Forest Soil	MLDIPSLAACGWLLMYNPTENPKLPITEWEQSLAFDTAAECETFIATRWVKTEKEHREFKLERYKCVPADAVYRHMTPKKN*
Ga0066905_1010837602	3300005713	Tropical Forest Soil	MLEIPTLAACGWLLMHNPTENLRLPITEWEQSLAFDTAAECETFIATRWVKAEKEHREFKLEHYKCVPADAVYPHITPKK*
Ga0066905_1018097682	3300005713	Tropical Forest Soil	MLEIFSLAACGWLLMHNPTEVLRLPITEWEQSLAFDTAAECETFIATRWVKAEKEHDDFKLERYKCVPSDAVYPPTQPK
Ga0066905_1021603232	3300005713	Tropical Forest Soil	FMLEILSLAACGWLLMHNPTEDLRPPITDWEQSLAFDTAAECEIFIATRWVKAEEEHREFKLEHYKCVPADAVYPQMTPKK*
Ga0066903_1008018551	3300005764	Tropical Forest Soil	MLEIFSLAACGWLLMHNPTENLKLPITEWEQSLAFDTAAECETFIATRWVKAEKEHGEFKLERYRCVPADAVYPHITPKK*
Ga0066903_1030957302	3300005764	Tropical Forest Soil	MLEIPALAACGWLLMHNPTENLKLPITEWEQSLAFDTAAECETFIATRWVKAEKEHDEFKLERYRCV
Ga0066903_1040682231	3300005764	Tropical Forest Soil	MLEILSLVACGWLMMHSPTEDLRFPITEWEQSLAFDTAAECETFIATRWVKAEKEHDEFKLERYRCVPDDAVYPHTQPKK*
Ga0066903_1057545742	3300005764	Tropical Forest Soil	MLEILSLAACGWLLMHNPTENLKLPITEWEQSLAFDTAAECETFIATRWVKAEKEHDEFKLERYRCV
Ga0081455_1000044046	3300005937	Tabebuia Heterophylla Rhizosphere	MLAILSLAACGWLLMHNPTADLKLPITEWEQSLAFDSAAECETFIATRWLKAEKEHEDFKLERYRCVPSDAVYPPTQPKK*
Ga0081538_100170448	3300005981	Tabebuia Heterophylla Rhizosphere	MLEIPALAACGWLLMYNPTENAKLPITEWEQSLAFDTAAECETFIATRWVKAEKEHREFKLERYRCVPADAVYPPRK*
Ga0075417_105703092	3300006049	Populus Rhizosphere	MLEIASLAACGWLLMYNPTENLKLPITEWEQSLAFDTAAECETFIAMRWVKAEKENREFKLERYRCVPAD
Ga0075427_100848532	3300006194	Populus Rhizosphere	MYNPTENLRLPITEWEQSLAFDTAAECETFIATRWVKAEKKNREFKLERYRCVPADAVYPHMTPRK*
Ga0075428_1001969923	3300006844	Populus Rhizosphere	MLEIPSLAACGWLLMYNPTENLRLPITEWEQSLAFDTAAECETFIAMRWVKAEKENREFKLERYRCVPADVVYPNMTPRK*
Ga0075428_1012394172	3300006844	Populus Rhizosphere	MLEIFSLAACGWLLMHNPTENVRLPITEWEQSLAFDTAVECETFIATRWVKEEKEHREFKLERYRCVPSDAVYPPMPPKK*
Ga0075421_1001923504	3300006845	Populus Rhizosphere	MYNPTENLRLPITEWEQSLAFDTAAECETFIATRWVKAEKENREFKLERYRCVPADAVYPHMTPRK*
Ga0075430_1000944823	3300006846	Populus Rhizosphere	MLEIASLAACGWLLMYNPTENLRLPITEWEQSLAFDTAAECETFIAMRWVKAEKENREFKLERYRCVPADVVYPHMTPRK*
Ga0075431_1006578542	3300006847	Populus Rhizosphere	MLEIASLAACGWLLMYNPTENLKLPITEWEQSLAFDTAAECETFIATRWVKAEKENREFKLERYRCVPSDAVYPPMPPKK*
Ga0075433_111160501	3300006852	Populus Rhizosphere	MLEIASLAACGWLLMYNPTENLKLPITEWEQSLAFDTAAECETFIAMRWVKAEKENREFKLERYRCVPSDAVYPPMPPKK*
Ga0075425_1008010874	3300006854	Populus Rhizosphere	MLEILSLAACGWLLMHNPTENLRLPITEWEQSLAFDTAAECETFIATRWVKAEKEHSEFKLERYRCVPADAVYPHITPKK*
Ga0075425_1022693371	3300006854	Populus Rhizosphere	MLEIASLAACGWLLMYNPTENLKLPITEWEQSLAFDTAAECETFIDTRWVKAEKENREFKLERYRCVPADAVYPHMTPRK*
Ga0075425_1024924251	3300006854	Populus Rhizosphere	MLEILSLAACGWLLMHNPTEDLRLSITEWEQSLAFDTAAECETFVATRWVKAEREHDEFKLERYKCVPTDAVYPHTQPKK*
Ga0075429_1009912551	3300006880	Populus Rhizosphere	MLEIPSLAACGWLLMYNPTENLRLPITEWEQSLAFDTAAECETFIATRWVKAEKENREFKLERYRCVPADAVYPHMTPRK*
Ga0075419_101952683	3300006969	Populus Rhizosphere	MLEILSLAACGWLLMHNPTENLRLPITEWEQSLAFDTAAECETFIATRWVKAEKENREFKLERYRCVPSDAVYPPMPPKK*
Ga0075435_1003009484	3300007076	Populus Rhizosphere	MLEILSLAACGWLLMHNPTENLRLPITEWEQSLAFDTAAECETFIATRWVKAEKEHLEFKLERYRCVPADAVYPHITPKK*
Ga0075418_104440715	3300009100	Populus Rhizosphere	MLEIFSLAACGWLLMHNPTENVRLPITEWEQSLAFDTAVECETFIATRWVKEEKEHREFKLERYRCVPADVVYPPRK*
Ga0111538_115683201	3300009156	Populus Rhizosphere	MLEIASLAACGWLLMHNPTENLRLPITEWEQSLAFDTAAECETFIATRWVKAEKKNREFKLERYRCVPSDAVYPPM
Ga0105092_102431602	3300009157	Freshwater Sediment	MYNPTENLRLPITEWEQSLAFDTAAECETFIAMRWVKAEKENREFKLERYRCVPADAVYPPMPPKK*
Ga0075423_112356942	3300009162	Populus Rhizosphere	MLEIASLAACGWLLMYNPTENLKLPITEWEQSLAFDTAAECETFIAMRWVKAEKGNREFKLERYRCVPSDAVYPPMPPKK*
Ga0126374_101903362	3300009792	Tropical Forest Soil	MHNPTENLKLPITEWEQSLAFDTAAECETFIATRWVKAEKEHDEFKLERYRCVPADAVYPHTQPKK*
Ga0126374_117332771	3300009792	Tropical Forest Soil	MLEIPALAACGWLLMLNPTENLKLPISEWEQSLAFDTAAECETFVATRWVKAEKEHDEFQLERYRCVPADGVYPHTQPKNKSTIH*
Ga0126380_103738153	3300010043	Tropical Forest Soil	MLEIPALAACGWLLMHNPTENLKLPITEWEQSLAFDTAAECETFIATRWVKAEKEHDEFKLERYRCVPADA
Ga0126380_106178631	3300010043	Tropical Forest Soil	MLEILSLVACGWLMMHSPTENLRLPISEWERSLAFDTAAECETFIATRWVKAEKEHDEFKLERYRCVPADAVYPHTQPKK*
Ga0126380_107061771	3300010043	Tropical Forest Soil	MLEIVSVAARGWLLMHNPTEDLRLSINEWEQSLAFDTAAECETFIATRWVKAEKEHREFKLEHYKCVPADAVYPHITPKK*
Ga0126380_120532902	3300010043	Tropical Forest Soil	CGWLLMHNPTENLKLPITEWEQSLAFDTAAECETFIATRWVKAEKEHREFKLERYRCVPADAVYPHTQPRK*
Ga0126384_1000604714	3300010046	Tropical Forest Soil	MLEIFSLAACGWLLMHNPTEVLRLPITEWEQSLAFDTAAECETFIATRWVKAEKEHDDFKLERYKCVPSDAVYPPTQPKK*
Ga0126384_100819515	3300010046	Tropical Forest Soil	MHNPTENLRLPITEWEQSLAFDTAAECETFNATRWVKAEKEHREFKLEHYKCVPADAVYPHIMPKK*
Ga0126384_101756343	3300010046	Tropical Forest Soil	MLEILSLAACGWLLMHNPTENLRLPITEWEQSLAFDTAAECETFIATRWVKAEKEHREFKLERYRCVPADAVYPHTQPKNKSTIH*
Ga0126384_103806051	3300010046	Tropical Forest Soil	MYNPTENPKLPITEWEQSLAFDTAAECETFIATRWVKAEKEHREFKLERYKSVPADAVYRHMTPKKN*
Ga0126382_100222663	3300010047	Tropical Forest Soil	MLEIFSLAACGWLLMHNPTENLRLPITEWEQSLAFDTAAECETFIATRWVKAEKEHREFKLERYKCVPANTVYPHITPKK*
Ga0126382_101959673	3300010047	Tropical Forest Soil	MHNPTENVRLPITEWEQSLAFDTAAECETFIATRWVKAEKEHREFKLERYKCVPADAVYRHMTPKKN*
Ga0126382_103631103	3300010047	Tropical Forest Soil	MHNPTENLKLPITEWEQSLAFDTAAECETFIATRWVKAENENREFKLERYRCVPSDAVYPHISPKNKTTVTRQ*
Ga0126382_104869954	3300010047	Tropical Forest Soil	GFMLEIFSLAACGWLLMHNPTENLKLPITDWEQSLAFDTAAECETFIATRWVKAEKEHREFKLERYKCVQSDAVYPPTQPKK*
Ga0126382_105111911	3300010047	Tropical Forest Soil	MLQILSLAACGWLLMHNPTDLRLPITEWEQSLAFDTAAECETFIATRWVKAEKEHREFKLERYRCVPGDVVYPSRK*
Ga0126382_114218861	3300010047	Tropical Forest Soil	MHNPTENLKLPITEWEQSLFDTAAECETFIATRWVKAEKEHDEFKLERYRCVPSDAVYPHTQPKK*
Ga0126382_117043031	3300010047	Tropical Forest Soil	MLEIFSLAACGWLLMHNPTEDLRLPITEWEQSLAFDTAAECETFIATRWVKAEKEHDDFKLERYKCVPSDAVYPP
Ga0126370_107182161	3300010358	Tropical Forest Soil	MLEIPALAACGWLLMHNPTENLKLPITEWEQSLAFDTAAECETFIATRWVKAEKEHDEFKLERYRCVPADAVYPHTQPKK*
Ga0126376_102832583	3300010359	Tropical Forest Soil	MLEILSLAACGWLLMHNPTEDLRLPITEWEQSLAFDTAAECETFIATRWVKAEKEHDEFKLERYRCVPADAVYPHTQPKNKSTIH*
Ga0126372_102063452	3300010360	Tropical Forest Soil	MLEILSLAACGWLLMHNPTENLKLPITEWEQSLAFDTAAECETFIATRWVKAEKEHDEFKLERYRCVPADAVYPHTQPKK*
Ga0126378_105980203	3300010361	Tropical Forest Soil	MLEIPALAACGWLLMHNPTENLKLPITEWEQSLAFDTAAECETFIATRWVKAEKEHDEFKLERYRCVPADAVYPHTQP
Ga0126378_112600791	3300010361	Tropical Forest Soil	MHNPTENLRLPITEWEQSLAFDTAAECETFIATRWVKAEKEHREFKLEHYKCVPADAVYPHITPKK*
Ga0126377_102448521	3300010362	Tropical Forest Soil	MLEILSLAACGWLLMHNPTENLRLSITGWEQSLAFDTAAECETFVATRWVKAEEEHDEFQLERYRCVPADAVYPQMTPKK*
Ga0126377_105467003	3300010362	Tropical Forest Soil	MLEILSLVACGWLMMHSPTENLRLPISEWEQSLAFDTAAECETFIATRWVKAEKEHDEFKLERYRCVPADAVYPHTQPKK*
Ga0126377_123856831	3300010362	Tropical Forest Soil	AACGWLLMYNPTENPKLPITEWEQSLAFDTAAECETFIATRWVKAEKEHNEFKLERYRCVPADAVYPHITPKK*
Ga0126377_133035061	3300010362	Tropical Forest Soil	MLEIVSVAACGWLLMHNPTEDLRLSINEWEQSLAFDTAAECETFIATRWVKAEKEHDEFKPERYRCVPADAVYPHTQPKK*
Ga0126379_118790102	3300010366	Tropical Forest Soil	MLEILSLAACGWLLMHNPTENLRLPITEWEQSLAFDTAAECETFIATRWVKAEKEHGEFKLERYRCVPADAVYPHITPKK*
Ga0126381_1006137462	3300010376	Tropical Forest Soil	MLEIPALAVCGWLLMHNPTENLKLPITEWEQSLAFDTAAECETFIATRWVKAEKEHDEFKLERYRCVPADAVYPHTQPKK*
Ga0126381_1013027022	3300010376	Tropical Forest Soil	MLEILSLAACGWLLMHNPTENLRLPITEWEQSLAFDTAAECETFIATRWVKAEKEHDEFKLERYRCVPA
Ga0126381_1018858212	3300010376	Tropical Forest Soil	MHNPTENLRLPITEWEQSLAFDTAAECETAAECETFIATRWVKAEKEHGEFKLERYRCVPADAVYPHIMPKK*
Ga0126383_105954612	3300010398	Tropical Forest Soil	MLEILSLAACGWLLMHNPTENLRLPITEWEQSLAFDTAAECETFIATRWVKAEKEHDEFKLERYRCVPADAVYPHTQPKK*
Ga0126383_133470851	3300010398	Tropical Forest Soil	CGWLLMHNPTENLKLPITEWEQSLAFDTAAECETFIATRWVKAEKEHDEFKLERYRCVPADAVYPHTQPKNKSTIH*
Ga0124844_11945462	3300010868	Tropical Forest Soil	MLEILSLVACGWLMMHNPTENLRLPITEWEQSLAFDTAAECETFIATRWVKAEKEHDEFKLERYRCVPTDAVYPHTQPKK*
Ga0124844_12331882	3300010868	Tropical Forest Soil	MLEIPALAACGWLLMHNPTENLRLPITEWEQSLAFDTAAECETFIATRWVKAEKEHDEFKLERYRCVPADAVYPHTQPKK*
Ga0120191_100691671	3300012022	Terrestrial	MLEILSLAACGWPLMYNPTENLKLPITEWEQSLAFDTAAECETFIAMRWVKAEKENREFKLERYRCVPSHAVYPPMPPKK*
Ga0137394_101273263	3300012922	Vadose Zone Soil	MLEIASLAACGWLLMYNPTESLKLPITEWEQSLAFDTAAECETFIAMRWVKAEKENREFKLERYRCVPADAVYPPMPPKK*
Ga0137404_100954185	3300012929	Vadose Zone Soil	MYNPTENLKLPITEWEQSLAFDTAAECETFIAMRWVKAEKENREFKLERYRCVPADAVYPPMPPKK*
Ga0137407_102076783	3300012930	Vadose Zone Soil	MLEILSLAACGWLLMHNPTENLRLPITEWEQSLAFDTAAECETFIATRWVKAEKEHREFKLERYRCVPANAVYPHITPKK*
Ga0126375_101269003	3300012948	Tropical Forest Soil	IPALAACGWLLMLNPTENLKLPISEWEQSLAFDTAAECETFIATRWVKAEKEHRDFKLERYKCVPADVVYPPRK*
Ga0126375_109799151	3300012948	Tropical Forest Soil	MLEILFLVACGWLLIHNPTENLRLSIKEWEQSLAFDTAAECETFIATRWVKAVKEHREFKLERYRCVPADVVHPQ
Ga0126375_112220742	3300012948	Tropical Forest Soil	AACGWLLMHNPTENLKLSITDWEQSVAFATAAECETFIATRWVKAEKEHREFKRERYKCVPSDAVYPPTQPKK*
Ga0137403_102478204	3300015264	Vadose Zone Soil	MLEIASLAACGWLLMYNPTENLKLPITEWEQSLAFDTAAECETFIAMRWVKAEKENREFKLERYRCVPADAVYPPMPPKK*
Ga0184608_100567001	3300018028	Groundwater Sediment	LLNSLTIGGFMLEIVAACGWLMMYNPTENLRLPITECEQSLAFDTAAECETFIATRWVKAEKENRDFKLERYRCVPADAVYRHMTPRK
Ga0184638_10059001	3300018052	Groundwater Sediment	MLEIPSLAACGWLLMYNPTENLRLPITEWEQSLAFDTAAECETFIATRWVKAEKENRDFKLERYRCVPADAVYRHMTPRK
Ga0184621_100819701	3300018054	Groundwater Sediment	MLEIPSLAACGWLLMYNPTENLRLPITECEQSLAFDTAAECETFIATRWVKAEKENRDFKLERYRCVPADAVYRHMTPRK
Ga0184629_103198031	3300018084	Groundwater Sediment	MLGIPSLAACGWLLMYNPTENLKLPITEWEQSLAFDTAAECETFIATRWVKAEKENREFKLERYRCVPADAVYPHKTPRK
Ga0193727_10242393	3300019886	Soil	MLEIPSVAACGWLLMYNPPGNLRLPITECEQSLAFDTAAECETFIATRWVKAEKENRDFKLERYRCVPADAVYRHMTPRK
Ga0193719_103079491	3300021344	Soil	CGRLLMYNPPGNLRLPITECEQSLAFHTAAECETFIATRWVKAEKENRDFKLERYRCVPADAVYRHMTPRK
Ga0126371_118200752	3300021560	Tropical Forest Soil	MLEILSLAACGWLLMHNPTENLRLPITEWEQSLAFDTAAECETFIATRWVKAEKEHREFKLEHYKCVPADAVYPHITPKK
Ga0126371_130874562	3300021560	Tropical Forest Soil	MLEILSLVACGWLMMHSPTENLKLPITEWEQSLAFDTAAECETFIATRWVKAEKEHDEFKLERYRCVPADAVYPHTQPKK
Ga0222622_105842441	3300022756	Groundwater Sediment	GIPSIAACGWLLMYNPTENLKLPITEWEQSLAFDTAAECETFIATRWVKAEKENREFKLERYRCVPADAVYPHKTPRK
Ga0209466_10006785	3300027646	Tropical Forest Soil	MLEIFSLAACGWLLMHNPTEVLRLPITEWEQSLAFDTAAECETFIATRWVKAEKEHDDFKLERYKCVPSDAVYPPTQPKK
Ga0209466_10210482	3300027646	Tropical Forest Soil	MLEIPALAACGWLLMHNPTENLKLPITEWEQSLAFDTAAECETFIATRWVKAEKEHREFKLERYRCV
Ga0209799_10224861	3300027654	Tropical Forest Soil	IGGFFMLEIPALAACGWLLMLNPTENLKLPISEWEQSLAFDTAAECETFIATRWVKAEKEHRDFKLERYKCVPADVVYPPRK
Ga0209799_10503693	3300027654	Tropical Forest Soil	MHNPTENLKLPITEWEQSLAFDTAAECETFIATRWVKAEKEHDEFKLERYRCVPADAVYPHTQPKK
Ga0209799_11010882	3300027654	Tropical Forest Soil	MHNPTENLKLPITEWEQSLAFDTAAECETFIATRWVKAEKEHREFKLERYRCVPADAVYPHTQPKNKSTIH
Ga0209814_105464801	3300027873	Populus Rhizosphere	MLEIASLAACGWLLMYNPTENLKLPITEWEQSLAFDTAAECETFIAMRWVKAEKENREFKLERYRCVPADVVYPHMTPRK
Ga0209465_104652791	3300027874	Tropical Forest Soil	MLEIFSLAACGWLLMHNPTEDLRLPITEWEQSLAFDTAAECETFIATRWVKAEKEHDEFKLERYRCVPADAVYPHTQPKK
Ga0209481_104004271	3300027880	Populus Rhizosphere	MLEILSLAACGWLLMHNPTENLRLPITEWEQSLAFDTAAECETFIATRWVKAEKENREFKLERYRCV
Ga0307469_108543853	3300031720	Hardwood Forest Soil	MLEILSLAACGWLLMHNPTENLRLPITEWEQSLAFDTAAECETFIATRWVKAEKEHLEFKLERYRCVPADAVYPHITP
Ga0307469_116083691	3300031720	Hardwood Forest Soil	SIGGFMLEILSLAACGWLLMHNPTENLRLPITEWEQSLAFDTAAECETFIATRWVKAEKEHSEFKLERYRCVPADAVYPHITPKK
Ga0307468_1000320714	3300031740	Hardwood Forest Soil	MLEILSLAACGWLLMHNPTENLRLPITEWEQSLAFDTAAECETFIATRWVKAEKEHSEFKLERYRCVPADAVYPHITPKK
Ga0307470_104262381	3300032174	Hardwood Forest Soil	MLEIASLAACGWLLMYNPTENLKLPITEWEQSLAFDTAAECETFIATRWVKAEKEHLEFKLERYRCVPADAVYPHITPKK
Ga0307471_1005475812	3300032180	Hardwood Forest Soil	MYNPTENLRLPITEWEQSLAFDTAAECETFIAMRWVKAEKENREFKLERYRCVPADVVYPNMTPRK
Ga0307472_1002977582	3300032205	Hardwood Forest Soil	MLEILSLAACGWLLMHNPTENLRLPITEWEQSLAFDTAAECETFIATRWVKAEKEHLEFKLERYRCVPADAVYPHITPKK

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F072508

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences