NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Metagenome / Metatranscriptome Family F072418

Metagenome / Metatranscriptome Family F072418

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
Select file to download:
   Download


Overview

Basic Information
Family ID F072418
Family Type Metagenome / Metatranscriptome
Number of Sequences 121
Average Sequence Length 83 residues
Representative Sequence TINQSGAKLTGHATDEFGEYEINGRLVDDQVTVVWSVAEDGKMLEITMKGKLETATLITGTAKLGDVGEGPLSARRTGDAGDY
Number of Associated Samples 102
Number of Associated Scaffolds 121

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 4.96 %
% of genes near scaffold ends (potentially truncated) 92.56 %
% of genes from short scaffolds (< 2000 bps) 97.52 %
Associated GOLD sequencing projects 95
AlphaFold2 3D model prediction Yes
3D model pTM-score0.56

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
Powered by Skylign

Most Common Taxonomy
Group Bacteria (97.521 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil
(9.091 % of family members)
Environment Ontology (ENVO) Unclassified
(38.017 % of family members)
Earth Microbiome Project Ontology (EMPO) Host-associated → Plant → Plant rhizosphere
(55.372 % of family members)


 ⦗Top⦘

Multiple Sequence Alignments

Select alignment to view:      

 ⦗Top⦘

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 0.00%    β-sheet: 50.45%    Coil/Unstructured: 49.55%
Feature Viewer
Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  		pTM-score: 0.56
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

 ⦗Top⦘

Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 121 Family Scaffolds
PF03480DctP 3.31
PF01774UreD 1.65
PF01799Fer2_2 1.65
PF00072Response_reg 0.83
PF12006DUF3500 0.83
PF06283ThuA 0.83
PF00069Pkinase 0.83

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 121 Family Scaffolds
COG0515Serine/threonine protein kinaseSignal transduction mechanisms [T] 3.31
COG0829Urease accessory protein UreHPosttranslational modification, protein turnover, chaperones [O] 1.65
COG4813Trehalose utilization proteinCarbohydrate transport and metabolism [G] 0.83

 ⦗Top⦘

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
All OrganismsrootAll Organisms97.52 %
UnclassifiedrootN/A2.48 %

Visualization
Powered by ApexCharts

Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
2124908009|FWIRA_GRAM18401DHUSZAll Organisms → cellular organisms → Bacteria → Acidobacteria527Open in IMG/M
3300001305|C688J14111_10066956All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1089Open in IMG/M
3300002459|JGI24751J29686_10132462All Organisms → cellular organisms → Bacteria → Acidobacteria526Open in IMG/M
3300002568|C688J35102_118868859All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria607Open in IMG/M
3300004479|Ga0062595_100534956All Organisms → cellular organisms → Bacteria → Acidobacteria892Open in IMG/M
3300004479|Ga0062595_101011096All Organisms → cellular organisms → Bacteria715Open in IMG/M
3300004798|Ga0058859_11512258All Organisms → cellular organisms → Bacteria → Acidobacteria620Open in IMG/M
3300005172|Ga0066683_10139499All Organisms → cellular organisms → Bacteria → Acidobacteria1485Open in IMG/M
3300005329|Ga0070683_102172522All Organisms → cellular organisms → Bacteria → Acidobacteria533Open in IMG/M
3300005330|Ga0070690_100738426All Organisms → cellular organisms → Bacteria → Acidobacteria759Open in IMG/M
3300005331|Ga0070670_101372856All Organisms → cellular organisms → Bacteria → Acidobacteria647Open in IMG/M
3300005332|Ga0066388_104214258Not Available733Open in IMG/M
3300005335|Ga0070666_10392368All Organisms → cellular organisms → Bacteria → Acidobacteria997Open in IMG/M
3300005335|Ga0070666_10473732All Organisms → cellular organisms → Bacteria → Acidobacteria906Open in IMG/M
3300005353|Ga0070669_100708240All Organisms → cellular organisms → Bacteria → Acidobacteria851Open in IMG/M
3300005440|Ga0070705_101277078All Organisms → cellular organisms → Bacteria → Acidobacteria608Open in IMG/M
3300005440|Ga0070705_101847458All Organisms → cellular organisms → Bacteria → Acidobacteria513Open in IMG/M
3300005446|Ga0066686_10707956All Organisms → cellular organisms → Bacteria679Open in IMG/M
3300005454|Ga0066687_10821839All Organisms → cellular organisms → Bacteria → Acidobacteria553Open in IMG/M
3300005459|Ga0068867_101175149All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPLOWO2_12_FULL_66_10704Open in IMG/M
3300005468|Ga0070707_100759745All Organisms → cellular organisms → Bacteria → Acidobacteria933Open in IMG/M
3300005471|Ga0070698_102193791All Organisms → cellular organisms → Bacteria → Acidobacteria506Open in IMG/M
3300005526|Ga0073909_10369014All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPLOWO2_12_FULL_66_10669Open in IMG/M
3300005535|Ga0070684_101624531All Organisms → cellular organisms → Bacteria → Acidobacteria610Open in IMG/M
3300005543|Ga0070672_100463031All Organisms → cellular organisms → Bacteria → Acidobacteria1093Open in IMG/M
3300005544|Ga0070686_100942655All Organisms → cellular organisms → Bacteria → Acidobacteria705Open in IMG/M
3300005545|Ga0070695_100703087All Organisms → cellular organisms → Bacteria802Open in IMG/M
3300005546|Ga0070696_101992551All Organisms → cellular organisms → Bacteria → Acidobacteria504Open in IMG/M
3300005557|Ga0066704_10703992All Organisms → cellular organisms → Bacteria636Open in IMG/M
3300005577|Ga0068857_100756698All Organisms → cellular organisms → Bacteria → Acidobacteria926Open in IMG/M
3300005615|Ga0070702_100734220All Organisms → cellular organisms → Bacteria → Acidobacteria756Open in IMG/M
3300005617|Ga0068859_101123961All Organisms → cellular organisms → Bacteria → Acidobacteria864Open in IMG/M
3300005640|Ga0075035_1568143All Organisms → cellular organisms → Bacteria → Acidobacteria683Open in IMG/M
3300005718|Ga0068866_10079496All Organisms → cellular organisms → Bacteria1757Open in IMG/M
3300005764|Ga0066903_100158094All Organisms → cellular organisms → Bacteria3278Open in IMG/M
3300005834|Ga0068851_10840547All Organisms → cellular organisms → Bacteria572Open in IMG/M
3300005843|Ga0068860_100600899All Organisms → cellular organisms → Bacteria → Acidobacteria1105Open in IMG/M
3300006031|Ga0066651_10359448All Organisms → cellular organisms → Bacteria → Acidobacteria780Open in IMG/M
3300006032|Ga0066696_10198402All Organisms → cellular organisms → Bacteria1279Open in IMG/M
3300006050|Ga0075028_100777851All Organisms → cellular organisms → Bacteria → Acidobacteria582Open in IMG/M
3300006051|Ga0075364_11257994All Organisms → cellular organisms → Bacteria → Acidobacteria501Open in IMG/M
3300006353|Ga0075370_10745667All Organisms → cellular organisms → Bacteria → Acidobacteria596Open in IMG/M
3300006354|Ga0075021_11092064All Organisms → cellular organisms → Bacteria → Acidobacteria522Open in IMG/M
3300006580|Ga0074049_12310063All Organisms → cellular organisms → Bacteria → Acidobacteria567Open in IMG/M
3300006871|Ga0075434_100669662All Organisms → cellular organisms → Bacteria → Acidobacteria1056Open in IMG/M
3300006871|Ga0075434_102433739All Organisms → cellular organisms → Bacteria → Acidobacteria525Open in IMG/M
3300006903|Ga0075426_10199806All Organisms → cellular organisms → Bacteria1449Open in IMG/M
3300006954|Ga0079219_11827215All Organisms → cellular organisms → Bacteria → Acidobacteria570Open in IMG/M
3300009029|Ga0066793_10158908All Organisms → cellular organisms → Bacteria → Acidobacteria1318Open in IMG/M
3300009088|Ga0099830_11056245All Organisms → cellular organisms → Bacteria → Acidobacteria673Open in IMG/M
3300009098|Ga0105245_10028300All Organisms → cellular organisms → Bacteria → Acidobacteria4942Open in IMG/M
3300009098|Ga0105245_10528511All Organisms → cellular organisms → Bacteria → Acidobacteria1199Open in IMG/M
3300009098|Ga0105245_12419391All Organisms → cellular organisms → Bacteria → Acidobacteria579Open in IMG/M
3300009101|Ga0105247_10883390All Organisms → cellular organisms → Bacteria → Acidobacteria689Open in IMG/M
3300009143|Ga0099792_11160587All Organisms → cellular organisms → Bacteria → Acidobacteria523Open in IMG/M
3300009551|Ga0105238_11589317All Organisms → cellular organisms → Bacteria → Acidobacteria684Open in IMG/M
3300009661|Ga0105858_1278397All Organisms → cellular organisms → Bacteria → Acidobacteria518Open in IMG/M
3300010047|Ga0126382_10920245All Organisms → cellular organisms → Bacteria → Acidobacteria758Open in IMG/M
3300010154|Ga0127503_10548775All Organisms → cellular organisms → Bacteria → Acidobacteria664Open in IMG/M
3300010304|Ga0134088_10630066All Organisms → cellular organisms → Bacteria → Acidobacteria535Open in IMG/M
3300010320|Ga0134109_10230689All Organisms → cellular organisms → Bacteria → Acidobacteria692Open in IMG/M
3300010362|Ga0126377_11201439All Organisms → cellular organisms → Bacteria → Acidobacteria829Open in IMG/M
3300010366|Ga0126379_10727108All Organisms → cellular organisms → Bacteria → Acidobacteria1088Open in IMG/M
3300010371|Ga0134125_12752365All Organisms → cellular organisms → Bacteria → Acidobacteria535Open in IMG/M
3300010403|Ga0134123_11797174All Organisms → cellular organisms → Bacteria → Acidobacteria666Open in IMG/M
3300012212|Ga0150985_101388400All Organisms → cellular organisms → Bacteria → Acidobacteria592Open in IMG/M
3300012212|Ga0150985_104267038All Organisms → cellular organisms → Bacteria → Acidobacteria576Open in IMG/M
3300012212|Ga0150985_105611126All Organisms → cellular organisms → Bacteria → Acidobacteria533Open in IMG/M
3300012212|Ga0150985_107104544All Organisms → cellular organisms → Bacteria → Acidobacteria529Open in IMG/M
3300012212|Ga0150985_108745899All Organisms → cellular organisms → Bacteria1304Open in IMG/M
3300012212|Ga0150985_114211412All Organisms → cellular organisms → Bacteria → Acidobacteria574Open in IMG/M
3300012212|Ga0150985_120605750All Organisms → cellular organisms → Bacteria → Acidobacteria755Open in IMG/M
3300012469|Ga0150984_104626881All Organisms → cellular organisms → Bacteria → Acidobacteria923Open in IMG/M
3300012469|Ga0150984_109086995All Organisms → cellular organisms → Bacteria → Acidobacteria720Open in IMG/M
3300012469|Ga0150984_110710218All Organisms → cellular organisms → Bacteria → Acidobacteria663Open in IMG/M
3300012469|Ga0150984_112304758All Organisms → cellular organisms → Bacteria → Acidobacteria718Open in IMG/M
3300012469|Ga0150984_115805346All Organisms → cellular organisms → Bacteria → Acidobacteria882Open in IMG/M
3300012469|Ga0150984_120985859All Organisms → cellular organisms → Bacteria → Acidobacteria548Open in IMG/M
3300012469|Ga0150984_121257320All Organisms → cellular organisms → Bacteria → Acidobacteria569Open in IMG/M
3300012944|Ga0137410_10535903All Organisms → cellular organisms → Bacteria → Acidobacteria961Open in IMG/M
3300013306|Ga0163162_11569809All Organisms → cellular organisms → Bacteria → Acidobacteria750Open in IMG/M
3300014745|Ga0157377_10598576All Organisms → cellular organisms → Bacteria → Acidobacteria786Open in IMG/M
3300015208|Ga0167664_1184251All Organisms → cellular organisms → Bacteria → Acidobacteria543Open in IMG/M
3300015245|Ga0137409_11144692All Organisms → cellular organisms → Bacteria618Open in IMG/M
3300016319|Ga0182033_11526376All Organisms → cellular organisms → Bacteria → Acidobacteria603Open in IMG/M
3300019269|Ga0184644_1211914All Organisms → cellular organisms → Bacteria → Acidobacteria1061Open in IMG/M
3300019789|Ga0137408_1350653All Organisms → cellular organisms → Bacteria → Acidobacteria1632Open in IMG/M
3300021479|Ga0210410_11840171All Organisms → cellular organisms → Bacteria → Acidobacteria500Open in IMG/M
3300025321|Ga0207656_10071579All Organisms → cellular organisms → Bacteria → Acidobacteria1542Open in IMG/M
3300025898|Ga0207692_10858574All Organisms → cellular organisms → Bacteria → Acidobacteria596Open in IMG/M
3300025900|Ga0207710_10008625All Organisms → cellular organisms → Bacteria4298Open in IMG/M
3300025914|Ga0207671_11157602All Organisms → cellular organisms → Bacteria → Acidobacteria606Open in IMG/M
3300025924|Ga0207694_10887653All Organisms → cellular organisms → Bacteria → Acidobacteria754Open in IMG/M
3300025932|Ga0207690_11215800All Organisms → cellular organisms → Bacteria → Acidobacteria629Open in IMG/M
3300025938|Ga0207704_10418164All Organisms → cellular organisms → Bacteria → Acidobacteria1062Open in IMG/M
3300025945|Ga0207679_11887554All Organisms → cellular organisms → Bacteria → Acidobacteria545Open in IMG/M
3300026023|Ga0207677_12314505All Organisms → cellular organisms → Bacteria → Acidobacteria500Open in IMG/M
3300026116|Ga0207674_10603620All Organisms → cellular organisms → Bacteria → Acidobacteria1060Open in IMG/M
3300026142|Ga0207698_12456705All Organisms → cellular organisms → Bacteria → Acidobacteria532Open in IMG/M
3300026222|Ga0209862_1074032All Organisms → cellular organisms → Bacteria → Acidobacteria580Open in IMG/M
3300028381|Ga0268264_10822813All Organisms → cellular organisms → Bacteria → Acidobacteria929Open in IMG/M
3300028768|Ga0307280_10354712All Organisms → cellular organisms → Bacteria → Acidobacteria542Open in IMG/M
3300028792|Ga0307504_10366656All Organisms → cellular organisms → Bacteria → Acidobacteria559Open in IMG/M
3300028884|Ga0307308_10126845All Organisms → cellular organisms → Bacteria → Acidobacteria1220Open in IMG/M
3300030990|Ga0308178_1076570All Organisms → cellular organisms → Bacteria → Acidobacteria673Open in IMG/M
3300031093|Ga0308197_10228145All Organisms → cellular organisms → Bacteria → Acidobacteria649Open in IMG/M
3300031096|Ga0308193_1038366All Organisms → cellular organisms → Bacteria → Acidobacteria686Open in IMG/M
3300031231|Ga0170824_125858197All Organisms → cellular organisms → Bacteria → Acidobacteria777Open in IMG/M
3300031236|Ga0302324_102762747All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPLOWO2_12_FULL_66_10592Open in IMG/M
3300031366|Ga0307506_10239394All Organisms → cellular organisms → Bacteria → Acidobacteria685Open in IMG/M
3300031474|Ga0170818_101725657All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPLOWO2_12_FULL_66_10784Open in IMG/M
3300031716|Ga0310813_11417468All Organisms → cellular organisms → Bacteria → Acidobacteria645Open in IMG/M
3300031854|Ga0310904_10721026Not Available691Open in IMG/M
3300032173|Ga0315268_10363083All Organisms → cellular organisms → Bacteria1412Open in IMG/M
3300032205|Ga0307472_100784787All Organisms → cellular organisms → Bacteria → Acidobacteria868Open in IMG/M
3300032256|Ga0315271_11346371All Organisms → cellular organisms → Bacteria → Acidobacteria616Open in IMG/M
3300033004|Ga0335084_11596643All Organisms → cellular organisms → Bacteria → Acidobacteria643Open in IMG/M
3300033412|Ga0310810_11172468All Organisms → cellular organisms → Bacteria → Acidobacteria627Open in IMG/M
3300033412|Ga0310810_11201633All Organisms → cellular organisms → Bacteria → Acidobacteria614Open in IMG/M
3300033475|Ga0310811_10321772All Organisms → cellular organisms → Bacteria → Acidobacteria1761Open in IMG/M
3300034817|Ga0373948_0072286Not Available775Open in IMG/M


 ⦗Top⦘

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil9.09%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere6.61%
Avena Fatua RhizosphereHost-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere5.79%
Avena Fatua RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere5.79%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Soil4.96%
Vadose Zone SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil4.13%
Corn RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere4.13%
Miscanthus RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere3.31%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere3.31%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil2.48%
Permafrost SoilEnvironmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost Soil2.48%
Switchgrass RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere2.48%
Populus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere2.48%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere2.48%
Corn RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere2.48%
SedimentEnvironmental → Aquatic → Freshwater → Lake → Sediment → Sediment1.65%
WatershedsEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds1.65%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil1.65%
Terrestrial SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil1.65%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil1.65%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil1.65%
Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil1.65%
SoilEnvironmental → Terrestrial → Soil → Loam → Grasslands → Soil1.65%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil1.65%
Corn RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere1.65%
Switchgrass RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere1.65%
Populus EndosphereHost-Associated → Plants → Roots → Bulk Soil → Unclassified → Populus Endosphere1.65%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere1.65%
Corn RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere1.65%
Groundwater SedimentEnvironmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment0.83%
SoilEnvironmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil0.83%
Glacier Forefield SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil0.83%
Surface SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil0.83%
Agricultural SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil0.83%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil0.83%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil0.83%
Hardwood Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil0.83%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural → Soil0.83%
SoilEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Soil0.83%
Prmafrost SoilEnvironmental → Terrestrial → Soil → Wetlands → Permafrost → Prmafrost Soil0.83%
PalsaEnvironmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa0.83%
Host-AssociatedHost-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated0.83%
Corn, Switchgrass And Miscanthus RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere0.83%
Switchgrass RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere0.83%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere0.83%
Rhizosphere SoilHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere Soil0.83%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere0.83%

Visualization
Powered by ApexCharts



Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
2124908009Soil microbial communities from sample at FACE Site Metagenome WIR_Amb2EnvironmentalOpen in IMG/M
3300001305Grasslands soil microbial communities from Hopland, California, USAEnvironmentalOpen in IMG/M
3300002459Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6Host-AssociatedOpen in IMG/M
3300002568Grasslands soil microbial communities from Hopland, California, USA - 2EnvironmentalOpen in IMG/M
3300004479Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAsEnvironmentalOpen in IMG/M
3300004798Switchgrass rhizosphere and bulk soil microbial communities from Kellogg Biological Station, Michigan, USA for expression studies - roots SR-2 (Metagenome Metatranscriptome)Host-AssociatedOpen in IMG/M
3300005172Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_132EnvironmentalOpen in IMG/M
3300005329Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaGEnvironmentalOpen in IMG/M
3300005330Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaGEnvironmentalOpen in IMG/M
3300005331Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaGHost-AssociatedOpen in IMG/M
3300005332Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)EnvironmentalOpen in IMG/M
3300005335Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaGHost-AssociatedOpen in IMG/M
3300005353Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaGHost-AssociatedOpen in IMG/M
3300005440Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaGEnvironmentalOpen in IMG/M
3300005446Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_135EnvironmentalOpen in IMG/M
3300005454Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_136EnvironmentalOpen in IMG/M
3300005459Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2Host-AssociatedOpen in IMG/M
3300005468Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaGEnvironmentalOpen in IMG/M
3300005471Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaGEnvironmentalOpen in IMG/M
3300005526Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire. - Coalmine Soil_Cen17_06102014_R1EnvironmentalOpen in IMG/M
3300005535Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaGEnvironmentalOpen in IMG/M
3300005543Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaGHost-AssociatedOpen in IMG/M
3300005544Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaGEnvironmentalOpen in IMG/M
3300005545Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaGEnvironmentalOpen in IMG/M
3300005546Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaGEnvironmentalOpen in IMG/M
3300005557Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_153EnvironmentalOpen in IMG/M
3300005577Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2Host-AssociatedOpen in IMG/M
3300005615Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-3 metaGEnvironmentalOpen in IMG/M
3300005617Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2Host-AssociatedOpen in IMG/M
3300005640Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate RNA 2013_052 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300005718Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2Host-AssociatedOpen in IMG/M
3300005764Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)EnvironmentalOpen in IMG/M
3300005834Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2Host-AssociatedOpen in IMG/M
3300005843Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2Host-AssociatedOpen in IMG/M
3300006031Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Angelo_100EnvironmentalOpen in IMG/M
3300006032Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_145EnvironmentalOpen in IMG/M
3300006050Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2014EnvironmentalOpen in IMG/M
3300006051Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4Host-AssociatedOpen in IMG/M
3300006353Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5Host-AssociatedOpen in IMG/M
3300006354Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2012EnvironmentalOpen in IMG/M
3300006580Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLPC (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300006871Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3Host-AssociatedOpen in IMG/M
3300006903Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD5Host-AssociatedOpen in IMG/M
3300006954Agricultural soil microbial communities from Georgia to study Nitrogen management - GA ControlEnvironmentalOpen in IMG/M
3300009029Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Permafrost soil replicate 1 DNA2013-189EnvironmentalOpen in IMG/M
3300009088Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaGEnvironmentalOpen in IMG/M
3300009098Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaGHost-AssociatedOpen in IMG/M
3300009101Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaGHost-AssociatedOpen in IMG/M
3300009143Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2EnvironmentalOpen in IMG/M
3300009551Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaGHost-AssociatedOpen in IMG/M
3300009661Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil DNA_2013-062EnvironmentalOpen in IMG/M
3300010047Tropical forest soil microbial communities from Panama - MetaG Plot_30EnvironmentalOpen in IMG/M
3300010154Soil microbial communities from Willow Creek, Wisconsin, USA - WC-WI-TBF metaT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300010304Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_09182015EnvironmentalOpen in IMG/M
3300010320Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_2_11112015EnvironmentalOpen in IMG/M
3300010362Tropical forest soil microbial communities from Panama - MetaG Plot_22EnvironmentalOpen in IMG/M
3300010366Tropical forest soil microbial communities from Panama - MetaG Plot_24EnvironmentalOpen in IMG/M
3300010371Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1EnvironmentalOpen in IMG/M
3300010403Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-3EnvironmentalOpen in IMG/M
3300012212Combined assembly of Hopland grassland soilHost-AssociatedOpen in IMG/M
3300012469Combined assembly of Soil carbon rhizosphereHost-AssociatedOpen in IMG/M
3300012944Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300013306Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaGHost-AssociatedOpen in IMG/M
3300014745Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5-5 metaGHost-AssociatedOpen in IMG/M
3300015208Arctic soil microbial communities from a glacier forefield, Storglaci?ren, Tarfala, Sweden (Samples st-15,16,16 pooled, 1st-3rd transect points, snow/rock/ice interface)EnvironmentalOpen in IMG/M
3300015245Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Hybrid Assembly)EnvironmentalOpen in IMG/M
3300016319Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00HEnvironmentalOpen in IMG/M
3300019269Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_5 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300019789Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (PacBio error correction)EnvironmentalOpen in IMG/M
3300021479Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-MEnvironmentalOpen in IMG/M
3300025321Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300025898Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025900Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025914Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025924Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025932Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025938Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300025945Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300026023Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300026116Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300026142Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300026222Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil DNA_2013-061 (SPAdes)EnvironmentalOpen in IMG/M
3300028381Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300028768Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_119EnvironmentalOpen in IMG/M
3300028792Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 19_SEnvironmentalOpen in IMG/M
3300028884Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_195EnvironmentalOpen in IMG/M
3300030990Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_149 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300031093Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_198 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300031096Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_194 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300031231Coassembly Site 11 (all samples) - Champenoux / Amance forestEnvironmentalOpen in IMG/M
3300031236Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_1EnvironmentalOpen in IMG/M
3300031366Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 25_SEnvironmentalOpen in IMG/M
3300031474Fir Coassembly Site 11 - Champenoux / Amance forestEnvironmentalOpen in IMG/M
3300031716Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YN3EnvironmentalOpen in IMG/M
3300031854Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D1EnvironmentalOpen in IMG/M
3300032173Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - C1_topEnvironmentalOpen in IMG/M
3300032205Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05EnvironmentalOpen in IMG/M
3300032256Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - C3_topEnvironmentalOpen in IMG/M
3300033004Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.4EnvironmentalOpen in IMG/M
3300033412Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - NCEnvironmentalOpen in IMG/M
3300033475Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YCEnvironmentalOpen in IMG/M
3300034817Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_N_1Host-AssociatedOpen in IMG/M

Geographical Distribution
Zoom:     Powered by OpenStreetMap


 ⦗Top⦘

Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
FWIRA_095591902124908009SoilWRVDFVTPLGQNWIIMTINQSGARLSGHATDEFGEYEINGRVVDDQVTVVWSVAEDGKMLEITMKGKLESATLITGTAKLGDVGEGPLSARRTGDAGDR
C688J14111_1006695613300001305SoilQPRSVAGQWRVDFVTPLGQNWIILTINQSGSKLSGHAVDEFGEYEINGRVVDDQVTIVWSVAEDGKMLEITMKGKLESATLITGTAKLGDVGEGPLSARRTGDAGDH*
JGI24751J29686_1013246213300002459Corn, Switchgrass And Miscanthus RhizosphereNQSGTKLTGHATDEFGEYEISGRVTGDEVTVVWSVAEDGKMLEITMKGKLETATLITGVAKLGXVGEGPLSARRTGDAGDR*
C688J35102_11886885913300002568SoilTPLGQNWIILTINQSGSRLTGHGTDEFGEYEIKGRVTGDEVTVTWSVAEDGKMLEITMKGKLETPTLITGVAKLGDVGEGPLSARRLGDAGDR*
Ga0062595_10053495623300004479SoilPLGQVGVNMTINQAGGKLTGHVTDEYGEYEINGRIAESQVTVVWSVPEDGKMLEITMRGKLEGNVITGTAKLGDVGEGPLSARRTGDAGDR*
Ga0062595_10101109613300004479SoilTGHVTDEYGEYEIDGRVADGQITVVWSVPEDGKMLRITMRGKLEGSVITGTAQLGDVGEGPLSARRTGDAGDR*
Ga0058859_1151225823300004798Host-AssociatedGQWRVDFVTPLGQNWTIMTINQSGTKLTGHATDEFGEYEISGRVTGDEVTVVWSVAEDGKMLEITMKGKLETATLITGVAKLGDVGEGPLSARRTGDAGDR*
Ga0066683_1013949923300005172SoilMWRVEFVTPQGQVGVNMTINQTGNRLTGQVTDEYGEFPIDGRLADQQVTIVWSVPEDGKLLEITMKGKLEGNVITGTVRLGNIGEGPLTARRVGDAGVRH*
Ga0070683_10217252223300005329Corn RhizosphereTPLGQNWIIMTINQSGARLSGHATDEFGEYEINGRVVDDQVTVIWSVAEDGKMLEITMKGKLETATLITGTAKLGDVGEGPLSARRTGDAGDR*
Ga0070690_10073842623300005330Switchgrass RhizosphereIIMTINQSGTRLTGHATDEFGEYEISGRLVDDQVTVVWSVAEDGKMLEITMKGKLETATLITGTAKLGDVGEGPLSARRTGDAGN*
Ga0070670_10137285613300005331Switchgrass RhizosphereMTINQSGTKLTGHATDEFGEYEISGRVTGDEVTVVWSVAEDGKMLEITMKGKLETATLITGVAKLGNVGEGPLSARRTGDAGDR*
Ga0066388_10421425813300005332Tropical Forest SoilVTDEYGEYPITGEFANGRVTVVWQVSEEGGRMLEITMRGALDGDEIRGTAQLGDVGEGPLLARRTGDAG*
Ga0070666_1039236813300005335Switchgrass RhizosphereTGHATDEFGEYEINGRLVDDQVTVVWSVAEDGKMLEITMKGKLETATLITGTAKLGDVGEGPLSARRTGDAGDY*
Ga0070666_1047373223300005335Switchgrass RhizosphereHATDEFGEYEISGRLVDDQVTVVWSVAEDGKMLEITMKGKLETATLITGTAKLGDVGEGPLSARRTGDAGN*
Ga0070669_10070824023300005353Switchgrass RhizosphereGQWRVDFVTPLGQNWTIMTINQSGTKLTGHATDEFGEYEISGRVNGDEVTVVWSVAEDGKMLEITMKGKLETATLITGVAKLGDVGEGPLSARRTGDAGDR*
Ga0070705_10127707823300005440Corn, Switchgrass And Miscanthus RhizosphereNQSGARLTGHVTDEFGEYEIAGRVADGQVTVIWSVPEDGKMLEITMKGKLEGNVITGTAKLGDVGEGPLSARRTGDAGDR*
Ga0070705_10184745813300005440Corn, Switchgrass And Miscanthus RhizosphereVTDEYGEYPIEGRLADDVVTVVWSVPEDGKMLEITMKGKLERNVITGTAKLGNVGEGPLTARRTGDAGH*
Ga0066686_1070795613300005446SoilQVGVNMTINQSGTKLTGQVTDEYGEWAIDGRISGDQVTVVWSVPEDGKMLEITMKGKLEGNVITGTAKLGDVGEGPLSARRTGDAGVE*
Ga0066687_1082183913300005454SoilLSGHVTDEYGEYEINGRFADGQVTVVWSVPEDGKMLEITMKGKLEGNVITGTAKLGDVGEGPLSARRTGDAGQR*
Ga0068867_10117514923300005459Miscanthus RhizosphereATDEFGEYEINGRLVDDQVTVVWSVAEDGKMLEITMKGKLETATLITGTAKLGDVGEGPLSARRTGDAGDY*
Ga0070707_10075974523300005468Corn, Switchgrass And Miscanthus RhizosphereVTDEYGEYEIAGRFADGQVTVVWSVPEDGKMLEITMKGKLEGNVITGTAKLGDVGEGPLSARRTGDAGDRETLLNQEPRS*
Ga0070698_10219379123300005471Corn, Switchgrass And Miscanthus RhizosphereFVTPLGQNWTTMTINQSGTKLTGHATDEYGEYEISGRVTGDEVTVVWSVAEDGKMLEITMKGKLETATLITGVAKLGDVGEGPLSARRTGDAGDR*
Ga0073909_1036901413300005526Surface SoilSGTWRVDFVTPLGQNWIIMTINQSGARLSGHATDEFGEYEINGRVVDDQVTVVWSVAEDGKMLEITMKGKLESATLITGTAKLGDVGEGPLSARRTGDAGDR*
Ga0070684_10162453113300005535Corn RhizosphereWRVDFVTPLGQNWTIMTINQSGSKLTGHATDEFGEYEINGRVVGDEVTVVWSVAEDGKMLEITMKGKLETATLITGVAKLGDVGEGPLSARRTGDAGDR*
Ga0070672_10046303113300005543Miscanthus RhizosphereWRVEFVTPLGQVGVNMTINQSGGKLTGHVTDEYGEYEINGRIAENQVTVVWSVPEDGKMLEITMRGKLEGNVITGTAKLGDVGEGPLSARRTGDAGDR*
Ga0070686_10094265523300005544Switchgrass RhizosphereATDEFGEYEINGRVVGDQVTVVWSVAEDGKMLEITMKGTLESATLITGTAKLGDVGEGPLSARRTGDAGDH*
Ga0070695_10070308723300005545Corn, Switchgrass And Miscanthus RhizosphereTDEYGEYEINGRIAENQVTVVWSVPEDGKMLEITMRGKLEGNVITGTAKLGDVGEGPLSARRTGDAGDR*
Ga0070696_10199255113300005546Corn, Switchgrass And Miscanthus RhizosphereTPLGQVGVNMTINQSGGKLTGHVTDEYGEYEINGRIAENQVTVVWSVPEDGKMLEITMRGKLEGNVITGTAKLGDVGEGPLSARRTGDAGDR*
Ga0066704_1070399213300005557SoilFVTPLGQVGVNMTINQAGTKLTGQVTDEYGEWAIDGRISGDQVTVVWAVPEDGKMLEITMKGKLEGNVITGTARLGDVGEGPLSARRTGDAGVE*
Ga0068857_10075669813300005577Corn RhizosphereATDEFGEYEISGRVTGDEVTVVWSVAEDGKMLEITMKGKLETATLITGVAKLGDVGEGPLSARRTGDAGDR*
Ga0070702_10073422013300005615Corn, Switchgrass And Miscanthus RhizosphereMTINQSGGKLTGHVTDEYGEYEINGRIAENQVTVVWSVPEDGKMLEITMRGKLEGNVITGTAKLGDVGEGPLSARRTGDAGDR*
Ga0068859_10112396123300005617Switchgrass RhizosphereGQNWTIMTINQSGTKLTGHATDEFGEYEISGRVTGDEVTVVWSVAEDGKMLEITMKGKLETATLITGVAKLGDVGEGPLSARRTGDAGDR*
Ga0075035_156814323300005640Permafrost SoilQNWIIMTINQSGTRLSGHATDEFGEYEINGRIVDDQVTVIWSVAEDGKMLEITMKGKLESANVITGTAKLGDVGEGPLSARRTGDAGDH*
Ga0068866_1007949613300005718Miscanthus RhizosphereTINQSGAKLTGHATDEFGEYEINGRLVDDQVTVVWSVAEDGKMLEITMKGKLETATLITGTAKLGDVGEGPLSARRTGDAGDY*
Ga0066903_10015809443300005764Tropical Forest SoilQSGTRLTGHVTDEYGEYEIAGRFADGKVTVVWSVPEDGKMLEITMTGTLDGSVINGTAKLGAVGEGPLSARRTGDAGDR*
Ga0068851_1084054713300005834Corn RhizosphereGKLTGHVTDEYGEYEINGRIAENQVTVVWSVPEDGKMLEITMRGKLEGNVITGTAKLGDVGEGPLSARRTGDAGDR*
Ga0068860_10060089913300005843Switchgrass RhizosphereNWTIMTINQSGTKLTGHATDEFGEYEISGRVTGDEVTVVWSVAEDGKMLEITMKGKLETATLITGVAKLGNVGEGPLSARRTGDAGDR*
Ga0066651_1035944823300006031SoilTKLTGHVTDEFGEYEINGRFTDRQVTVVWSVPEDGKMLEITMKGTLDGNVITGTAKLGNVGEGPLSARRTGDAGDR*
Ga0066696_1019840233300006032SoilQVGVNMTINQSGAKLTGHVTDEFGEYEIAGRIADTQVTVVWSVPEDGKMLEITMKGKLEGNVITGTAKLGDVGEGPLSARRTGDAGDR*
Ga0075028_10077785123300006050WatershedsPLGQNWIIMTINQSGTKLTGHAADEFGEYEISGRVAGDQVTVVWSVAEDGKMLEITMKGKLETATLITGTAKLGDVGEGPLSARRTGDAGDN*
Ga0075364_1125799413300006051Populus EndosphereDEFGEYEISGRLVDDQVTVVWSVAEDGKMLEITMKGKLETATLITGTAKLGDVGEGPLSARRTGDAGN*
Ga0075370_1074566723300006353Populus EndosphereKLTGHATDEFGEYEINGRFVDDQVTVVWSVAEDGKMLEITMKGKLETATLITGTAKLGDVGEGPLSARRTGDAGDN*
Ga0075021_1109206413300006354WatershedsGAKLTGHATDEFGEYELTGRVVDDQVTVVWSVAEDGKMLEITMKGKLETATLITGTAKLGDVGEGPLSARRTGDAGDH*
Ga0074049_1231006323300006580SoilGTKLTGHATDEFGEYEINGRVADDQVTVIWSVAEDGKMLEITMKGKLETPTLITGTAKLGDVGEGPLSARRTGDAGDR*
Ga0075434_10066966223300006871Populus RhizosphereEFVTPLGQVGVNMTINQSGARLTGHVTDEFGEYEIAGRVADGQVTVIWSVPEDGKMLEITMKGKLEGNVITGTAKLGDVGEGPLSARRTGDAGDR*
Ga0075434_10243373923300006871Populus RhizosphereEFVTPLGQTGVNMTINQSGTRLTGQVTDEYGEYPIEGRLADDVVTVVWSVPEDGKMLEITMKGKLEGNVITGTAKLGNVGEGPLTARRTGDAGH*
Ga0075426_1019980633300006903Populus RhizosphereGHVTDEFGEYEIAGRVADGQVTVIWSVPEDGKMLEITMKGKLEGNVITGTAKLGDVGEGPLSARRTGDAGDR*
Ga0079219_1182721513300006954Agricultural SoilRVEFITPLGQTAVTMTINQNGARLSGHVVDEYGEYEISGRVADDQVTVVWSVPEDGKMLEITMRGKLDGNVITGTAQLGDVGEGPLSARRTGDAGER*
Ga0066793_1015890813300009029Prmafrost SoilINQTGTKLTGHATDEFGEYPIDGRIVDDQVTVVWSVPEDGKMLEITMKGKIEGNQITGTAKLGDVGEGPLTARRTGDADLH*
Ga0099830_1105624513300009088Vadose Zone SoilTGSHLTGQITDEYGEFPIDGRLADQQVTIVWSVPEDGKLLEITMKGKLEGNVITGTVRLGNVGEGPLTARRVGDAGDAAVR*
Ga0105245_1002830013300009098Miscanthus RhizosphereFGEYEISGRLVDDQVTVVWSVAEDGKMLEITMKGKLETATLITGTAKLGDVGEGPLSARRTGDAGN*
Ga0105245_1052851113300009098Miscanthus RhizosphereQNWIIMTINQSGAKLTGHATDEFGEYEINGRLVDDQVTVVWSVAEDGKMLEITMKGKLETATLITGTAKLGDVGEGPLSARRTGDAGDY*
Ga0105245_1241939123300009098Miscanthus RhizosphereDEFGEYEISGRVNGDEVTVVWSVAEDGKMLEITMKGKLETATLITGVAKLGDVGEGPLSARRTGDAGDR*
Ga0105247_1088339023300009101Switchgrass RhizosphereEYEINGRVVEDQVTVVWSVAEDGKMLEITMKGKLESATLITGTAKLGDVGEGPLSARRTGDAGDR*
Ga0099792_1116058713300009143Vadose Zone SoilGEWEIAGRIVDGQVTVVWSVPEDGKMLEITMKGKLEGNVITGTAKLGDVGEGPLSARRTGDAGDR*
Ga0105238_1158931723300009551Corn RhizosphereHVTDEYGEYEINGRIAENQVTVVWSVPEDGKMLEITMRGKLEGNVITGTAKLGDVGEGPLSARRTGDAGDR*
Ga0105858_127839713300009661Permafrost SoilNMTINQTGAKLTGHATDEFGEYPIEGRVADDQVTVVWEVPEDGKMLEITMKGKLEGNLITGTAQLGTVGEGPLTARRTGDGDVR*
Ga0126382_1092024523300010047Tropical Forest SoilRVEFVTPLGQVGVNMTINQSGTKLTGQVTDEYGEWAIDGRINGDQVTVVWSVPEDGKMLEITMKGKLEGNVITGTAKLGDVGEGPLSARRTGDAGVE*
Ga0127503_1054877513300010154SoilVTPLGQNWIIMTINQSGTRLTGHATDEFGEYEISGRVVDDQVTVVWSVAEDGKMLEITMKGKLETATLITGTAKLGDVGEGPLSARRTGDAGN*
Ga0134088_1063006623300010304Grasslands SoilAGNRLTGQVTDEYGEFPIDGRLADQQVTIVWSVPEDGKLLEITMKGKLEGNVITGTVRLGNIGEGPLTARRVGDAGVRY*
Ga0134109_1023068913300010320Grasslands SoilLTGQVTDEYGEFPIDGRLADQQVTIVWSVPEDGKLLEITMKGKLEGNVITGTVRLGNIGEGPLTARRVGDAGVRH*
Ga0126377_1120143923300010362Tropical Forest SoilMWRVQFAAPLGQRAVNMTINQRGTKLSGQVTDEYGEYPITGEFLNGRVTVVWSVSEEGGRQLEITMRGTLEGDEIRGTAQLGDVGEGPLVARRTGDAG*
Ga0126379_1072710813300010366Tropical Forest SoilQNWIIMTINQSGSRLTGHATDEFGEYEISGRVVDDQVTVVWSVAEDGKMLEITMKGKLETATLITGTAKLGDVGEGPLSARRTGDAGN*
Ga0134125_1275236523300010371Terrestrial SoilGRVTDEYGEWPIDGRLADGVVTVVWSVPEDGKMMEITMKGKLTGNVINGTAQLGNVGEGSLTARRDAEG*
Ga0134123_1179717413300010403Terrestrial SoilIMTINQSGTKLTGHATDEFGEYEISGRVTGDEVTVVWSVAEDGKMLEITMKGKLETATLITGVAKLGNVGEGPLSARRTGDAGDR*
Ga0150985_10138840033300012212Avena Fatua RhizosphereAGMWRVEFVTPLGQVGVNMTINQSGTRLTGHVTDEYGEYEINGRVADGVVTVVWSVPEDGKMLEITMRGKVDGNLITGTAKLGEVGEGPLSARRTGDAGDR*
Ga0150985_10426703813300012212Avena Fatua RhizosphereDEYGEYEIDGRVAEGQITVAWSVPEDGKMLRITMRGKLEGSVITGTAQLGDVGEGPLSARRTGDAGDR*
Ga0150985_10561112623300012212Avena Fatua RhizosphereLTGHGTDEFGEYEINGRVAGDEVTVSWSVAEDGKMLEITMKGRLETPTLITGVAKLGDVGEGPLSARRLGDAGDR*
Ga0150985_10710454413300012212Avena Fatua RhizosphereINQSGAKLTGHATDEFGEYEINGRVVGDEVTVVWSVAEDGKMLEITMKGKLETATLITGVAKLGDVGEGPLSARRTGDAGDR*
Ga0150985_10874589933300012212Avena Fatua RhizosphereWRVEFVTPLGQVGVNMTINQSGTRLTGHVTDEYGEYEIAGRIADTQVTVVWSVPEDGKMLEITMNGKLDGNVITGTAKLGDVGEGPLSARRTGDAGDR*
Ga0150985_11421141213300012212Avena Fatua RhizosphereARLTGHATDEFGEYEINGRLVDDQVTVVWSVAEDGKMLEITMKGKLETATLITGTAKLGDVGEGPLSARRTGDAGN*
Ga0150985_12060575013300012212Avena Fatua RhizosphereDEFGEYEINGRVVDDQVTVVWSVAEDGKMLEITMKGKLESATLITGTAKLGDVGEGPLSARRTGDAGDH*
Ga0150984_10462688123300012469Avena Fatua RhizosphereSGHAVDEFGEYEINGRVVDDQVTVVWSVAEDGKMLEITMKGKLESATLITGTAKLGDVGEGPLSARRTGDAGDH*
Ga0150984_10908699513300012469Avena Fatua RhizospherePLGQNWIILTINQSGSKLSGHAVDEFGEYEINGRVVDDQVTIVWSVAEDGKMLEITMKGKLESATLITGTAKLGDVGEGPLSARRTGDAGDH*
Ga0150984_11071021823300012469Avena Fatua RhizosphereVGVNMTINQSGTRLTGHVTDEYGEYEINGRVADGVVTVVWSVPEDGKMLEITMRGKVDGNLITGTAKLGEVGEGPLSARRTGDAGDR*
Ga0150984_11230475823300012469Avena Fatua RhizosphereVEFVTPLGQVGVNMTINQSGAKLTGHVTDEFGEYEIAGRIADNQVTVVWSVPEDGKMLEITMKGKLEGNVITGTAKLGDVGEGPLSARRTGDAGDR*
Ga0150984_11580534613300012469Avena Fatua RhizosphereATDEFGEYEINGRLADDQVTVIWSVPEDGKMLEITMKGKLESATLITGTAKLGDVGEGPLSARRTGDAGDQ*
Ga0150984_12098585923300012469Avena Fatua RhizosphereFVTPLGQVGVNMTINQSGTRLTGHVTDEYGEYEIAGRIADTQVTVVWSVPEDGKMLEITMNGKLDGNVITGTAKLGDVGEGPLSARRTGDAGDR*
Ga0150984_12125732023300012469Avena Fatua RhizosphereDVCSSDLTKLTGHATHEFGEYEIAGRVTGDEVTVVWSVAEDGKMLEITMKGKLETATLITGVAKLGDVGEGPLSARRTGDAGDR*
Ga0137410_1053590313300012944Vadose Zone SoilGEWEIAGRIVDGQVTVVWSVPEDGKMLEITMKGKLEGNVITGTAKLGNVGEGPLSARRTGDAGDR*
Ga0163162_1156980913300013306Switchgrass RhizosphereGTKLTGHATDEFAEYEISGRVTGDEVTVVWSVAEDGKMLEITMKGKLETATLITGVAKLGDVGEGPLSARRTGDAGDR*
Ga0157377_1059857613300014745Miscanthus RhizosphereTGHATDEFGEYEISGRVNGDEVTVVWSVAEDGKMLEITMKGKLETATLITGVAKLGDVGEGPLSARRTGDAGDR*
Ga0167664_118425123300015208Glacier Forefield SoilFGEYELAGRIVDDQVTVVWSVAEDGKMLEITMKGKLESPTLITGTAKLGDVGEGPLSARRTGDAGDY*
Ga0137409_1114469223300015245Vadose Zone SoilTDEYGEWPIEGKLTGAEVTVVWSVPEDGKMMEITMKGKLEGNLITGTAKLGDVGEGPLSARRPKNFPEPWPP*
Ga0182033_1152637613300016319SoilTPLGQNWIIMTINQSGTRLTGHAADEFGEYEISGRVVDDQVTVVWSVAEDGKMLEITMKGKLETATLITGTAKLGDVGEGPLSARRTGDAGN
Ga0184644_121191413300019269Groundwater SedimentPLGQNWTIMTINQSGTKLTGHATDEFGEYEISGRVTGDEVTVVWSVAEDGKMLEITMKGKLETATLITGVAKLGNVGEGPLSARRTGDAGDR
Ga0137408_135065333300019789Vadose Zone SoilMTINQSGTKLSGQVTDEYGEWAIDGRINGDQVTVVWSVPEDGKMLEITMKGKIDGNVITGTAKLGDVGEGPLSARRTGDAGVE
Ga0210410_1184017123300021479SoilRVTDEYGEWPIEGRIAESEVTVVWTVPEDGKLLEITMKGTLEGSVITGTAKLGDIGEGPLTARRTGDASVY
Ga0207656_1007157913300025321Corn RhizosphereTWRVDFVTPLGQNWIIMTINQSGAKLTGHATDEFGEYEITGRLVDDQVTVVWSVAEDGKMLEITMKGKLETATLITGTAKLGDVGEGPLSARRTGDAGDH
Ga0207692_1085857413300025898Corn, Switchgrass And Miscanthus RhizosphereVAGVWRVEFVTPLGQVGVNMTINQSGVRLTGHVTDEFGEYEINGRIADTQVTVVWSVPEDGKMLEITMSGKLEGNVITGTAKLGDVGEGPLS
Ga0207710_1000862543300025900Switchgrass RhizosphereEFGEYEISGRVTGDEVTVVWSVAEDGKMLEITMKGKLETATLITGVAKLGDVGEGPLSARRTGDAGDR
Ga0207671_1115760223300025914Corn RhizosphereMTINQSGTKLTGHATDEFGEYEISGRVNGDEVTVVWSVAEDGKMLEITMKGKLETATLITGVAKLGDVGEGPLSARRTGDAGDR
Ga0207694_1088765313300025924Corn RhizosphereVNMTINQSGGKLTGHVTDEYGEYEINGRIAENQVTVVWSVPEDGKMLEITMRGKLEGNVITGTAKLGDVGEGPLSARRTGDAGDR
Ga0207690_1121580023300025932Corn RhizosphereRVDFVTPLGQNWTIMTINQSGSKLTGHATDEFGEYEINGRVVGDEVTVVWSVAEDGKMLEITMKGKLETATLITGVAKLGDVGEGPLSARRTGDAGDR
Ga0207704_1041816423300025938Miscanthus RhizosphereAKLTGHATDEFGEYEINGRLVDDQVTVVWSVAEDGKMLEITMKGKLETATLITGTAKLGDVGEGPLSARRTGDAGDY
Ga0207679_1188755413300025945Corn RhizosphereFGEYEISGRVTGDEVTVVWSVAEDGKMLEITMKGKLETATLITGVAKLGNVGEGPLSARRTGDAGDR
Ga0207677_1231450513300026023Miscanthus RhizosphereHATDEFGEYEINGRVVGDEVTVVWSVAEDGKMLEITMKGKLETATLITGVAKLGDVGEGPLSARRTGDAGDR
Ga0207674_1060362023300026116Corn RhizosphereTPLGQNWTIMTINQSGTKLTGHATDEFGEYEISGRVNGDEVTVVWSVAEDGKMLEITMKGKLETATLITGVAKLGNVGEGPLSARRTGDAGDR
Ga0207698_1245670523300026142Corn RhizosphereVDFVTPLGQNWIILTINQSGSRLTGHGTDEFGEYELNGRVAGDEVTVIWSVAEDGKMLEITMKGKLETPTLITGVAKLGDVGEGPLSARRLGDAGDR
Ga0209862_107403223300026222Permafrost SoilDFVTPLGQNWIIMTNNQSGARLSGHATDEFGEYEINGRIVDDQVTVIWSVAEDGKMLEITMKGKLESANVITGTAKLGDVGEGPLSARRTGDAGDH
Ga0268264_1082281323300028381Switchgrass RhizosphereGHVTDEYGEYEINGRIAENQVTVTWSVPEDGKMLEITMRGKLEGNVITGTAKLGDVGEGPLSARRTGDAGDR
Ga0307280_1035471213300028768SoilVSGTWRVDFVTPLGQNWIIMTINQSGARLSGHATDEFGEYEINGRVVDDQVTVVWSVAEDGKMLEITMKGKLESATLITGTAKLGDVGEGPLSARRTGDAGDR
Ga0307504_1036665613300028792SoilGQVGVNMTINQAGTHLTGQVTDEYGEFPIDGRLADEQVTIVWSVPEDGKLVEITMKGKLEGNVINGTVTLGKVGEGPLTARRVGDAGDAGVR
Ga0307308_1012684513300028884SoilQGQVGVNMTINQAGNRLTGQVTDEYGEFPIDGRLADQQVTIVWSVPEDGKILEITMKGKLEGSVITGTVRLGNIGEGPLTARRVGDAGDAGVR
Ga0308178_107657013300030990SoilTINQSGTKLTGHATDEFGEYEISGRVTGDEVTVVWSVAEDGKMLEITMKGKLETATLITVVAKLGDVGEGPLSARRTGDAGDR
Ga0308197_1022814513300031093SoilTDEFGEYEISGRVTGDEVTVVWSVAEDGKMLEITMKGKLETATLITGVAKLGDVGEGPLSARRTGDAGDR
Ga0308193_103836623300031096SoilTPLGQNWIIMTINQSGARLTGHATDEFGEYEINGRLVDDQVTVVWSVAEDGKMLEITMKGKLESATLITGTAKLGDVGEGPLSARRTGDAGDH
Ga0170824_12585819713300031231Forest SoilMTINQSGARLSGHATDEFGEYEINGRVVDDQVTVVWSVAEDGKMLEITMKGKLESATLITGTAKLGDVGEGPLSARRTGDAGDR
Ga0302324_10276274713300031236PalsaDEFGEYAIEGRVADDQVTVVWEVPEDGKMLEITMKGKLEGNVITGTAKLGDVGEGPLTARRTGDGDDNR
Ga0307506_1023939413300031366SoilYELNGRIAGDEVTVVWSVAEDGKMLEITMKGKLETATLITGVAKLGDVGEGPLSARRTGDAGDR
Ga0170818_10172565723300031474Forest SoilSGTWRVDFVTPLGQNWIIMTINQSGAKLTGHATDEFGEYEISGRLVDDQVTVVWSVAEDGKMLEITMKGKLESATLITGTAKLGDVGEGPLSARRTGDAGDR
Ga0310813_1141746823300031716SoilLTGHVTDEYGEYEINGRFADGQVTVVWSVPEDGKMLEITMKGKLEGNVITGTAKLGDVGEGPLSARRTGDAGDR
Ga0310904_1072102613300031854SoilYGEWPISGEYANGRVTVVWSVPEEGKMLKITMRGTLNGDEIRGTAQLGDVGEGALVARRTGDSG
Ga0315268_1036308313300032173SedimentVDFVTPLGQTWINLTINQSGTKLTGHGTDEFGEYEIAGRVAGDEVTVVWSVAEDGKMLEITMKGKIESATLITGTAKLGDVGEGPLSARRTGDAGD
Ga0307472_10078478713300032205Hardwood Forest SoilLGRVEFVTPLGQVGVNMTINQSGGKLTGHVTDEYGEYEINGRIAENQVTVVWTVPEDGKMLEITMRGKLEGNVITGTAKLGDVGEGPLSARRTGDAGDR
Ga0315271_1134637113300032256SedimentLSGHATDEFGEYEIAGRIVDDQVTVVWSVAEDGKMLEITMKGKLESANVITGTAKLGNVGEGPLSARRTGDAGND
Ga0335084_1159664323300033004SoilLSGHVIDEYGEYDVKGRFADDEVTIAWSVPEHGTMLAITMRGRLDGDQIRGTARLGDVGEGPFSARRTGEAGER
Ga0310810_1117246813300033412SoilTINQAGGKLTGHVTDEYGEYEINGRIAENQVTVTWSVPEDGKMLEITMRGKLEGNVITGTAKLGDVGEGPLSARRTGDAGDR
Ga0310810_1120163323300033412SoilMTINQAGGKLTGHVTDEYGEYEINGRIAENQVTVVWSVPEDGKMLEITMRGKLEGNVITGTAKLGDVGEGPLSARRTGDAGDR
Ga0310811_1032177213300033475SoilLGQVGVNMTINQAGGKLTGHVTDEYGEYEINGRIAENQVTVTWSVPEDGKMLEITMRGKLEGNVITGTAKLGDVGEGPLSARRTGDAGDR
Ga0373948_0072286_555_7613300034817Rhizosphere SoilVTDEFGEYPIRGRFADGYVTVSWSVSDEGKLLEITMTGKLTGDVIDGTAKLGDVGEGTLVARRIGDAG

 ⦗Top⦘


Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.