Metagenome / Metatranscriptome Family F072312

Basic Information
Family ID	F072312
Family Type	Metagenome / Metatranscriptome
Number of Sequences	121
Average Sequence Length	73 residues
Representative Sequence	VLYCVECGCCSGELGKGWVAFRCDDPEDDEGPEVAIWCPVCAAAEFGYRPDIAATYVRAWEPTPNEIP
Number of Associated Samples	86
Number of Associated Scaffolds	121

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	68.33 %
% of genes near scaffold ends (potentially truncated)	33.88 %
% of genes from short scaffolds (< 2000 bps)	89.26 %
Associated GOLD sequencing projects	77
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.54

Most Common Taxonomy
Group	Unclassified (68.595 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (15.703 % of family members)
Environment Ontology (ENVO)	Unclassified (45.455 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (66.116 % of family members)

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 12.50% β-sheet: 4.17% Coil/Unstructured: 83.33%
Feature Viewer

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Pfam ID	Name	% Frequency in 121 Family Scaffolds
PF09954	DUF2188	3.31
PF12847	Methyltransf_18	2.48
PF06724	DUF1206	2.48
PF10262	Rdx	1.65
PF12728	HTH_17	1.65
PF13823	ADH_N_assoc	1.65
PF01872	RibD_C	1.65
PF04070	DUF378	0.83
PF00589	Phage_integrase	0.83
PF05175	MTS	0.83
PF13673	Acetyltransf_10	0.83
PF01261	AP_endonuc_2	0.83
PF03713	DUF305	0.83
PF06964	Alpha-L-AF_C	0.83
PF13229	Beta_helix	0.83
PF03966	Trm112p	0.83
PF12697	Abhydrolase_6	0.83
PF06185	YecM	0.83
PF14285	DUF4367	0.83
PF13231	PMT_2	0.83

COG ID	Name	Functional Category	% Frequency in 121 Family Scaffolds
COG1985	Pyrimidine reductase, riboflavin biosynthesis	Coenzyme transport and metabolism [H]	1.65
COG0262	Dihydrofolate reductase	Coenzyme transport and metabolism [H]	1.65
COG2155	Uncharacterized membrane protein YuzA, DUF378 family	Function unknown [S]	0.83
COG3102	Uncharacterized conserved protein YecM, predicted metalloenzyme	General function prediction only [R]	0.83
COG3534	Alpha-L-arabinofuranosidase	Carbohydrate transport and metabolism [G]	0.83
COG3544	Uncharacterized conserved protein, DUF305 family	Function unknown [S]	0.83

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	68.60 %
All Organisms	root	All Organisms	31.40 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	68.60 %
cellular organisms	root	All Organisms → cellular organisms	31.40 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	68.60 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	31.40 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	68.60 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	21.49 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	3.31 %
Bacteria incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	68.60 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	15.70 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	2.48 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	2.48 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.83 %
Bacteria candidate phyla	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	68.60 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	14.05 %
unclassified Chloroflexi	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi	2.48 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	2.48 %
Candidatus Rokubacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	0.83 %
Sphingomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	68.60 %
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	8.26 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	2.48 %
unclassified Deltaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria	0.83 %
Sphingomonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae	0.83 %
unclassified Candidatus Rokubacteria	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	68.60 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	8.26 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	2.48 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	0.83 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	0.83 %
Sphingomonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	0.83 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2088090015\|GPICI_839619	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1162	Open in IMG/M
3300000956\|JGI10216J12902_107305343	Not Available	763	Open in IMG/M
3300000956\|JGI10216J12902_119023464	Not Available	593	Open in IMG/M
3300000956\|JGI10216J12902_121741249	Not Available	878	Open in IMG/M
3300003990\|Ga0055455_10128470	Not Available	764	Open in IMG/M
3300003996\|Ga0055467_10260403	All Organisms → cellular organisms → Bacteria	548	Open in IMG/M
3300004463\|Ga0063356_104270672	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	615	Open in IMG/M
3300005093\|Ga0062594_100040099	All Organisms → cellular organisms → Bacteria	2273	Open in IMG/M
3300005093\|Ga0062594_102536298	Not Available	564	Open in IMG/M
3300005329\|Ga0070683_100422295	Not Available	1272	Open in IMG/M
3300005339\|Ga0070660_100586785	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	931	Open in IMG/M
3300005340\|Ga0070689_101430369	All Organisms → cellular organisms → Bacteria → Terrabacteria group	625	Open in IMG/M
3300005345\|Ga0070692_10891787	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	614	Open in IMG/M
3300005354\|Ga0070675_100598585	Not Available	1000	Open in IMG/M
3300005356\|Ga0070674_100182953	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1607	Open in IMG/M
3300005356\|Ga0070674_100797472	Not Available	815	Open in IMG/M
3300005356\|Ga0070674_101748511	Not Available	563	Open in IMG/M
3300005365\|Ga0070688_100747117	Not Available	761	Open in IMG/M
3300005365\|Ga0070688_100994770	Not Available	666	Open in IMG/M
3300005367\|Ga0070667_100740997	Not Available	910	Open in IMG/M
3300005456\|Ga0070678_102412268	Not Available	500	Open in IMG/M
3300005535\|Ga0070684_100068769	All Organisms → cellular organisms → Bacteria	3113	Open in IMG/M
3300005543\|Ga0070672_100910053	All Organisms → cellular organisms → Bacteria → Terrabacteria group	777	Open in IMG/M
3300005543\|Ga0070672_101490467	Not Available	606	Open in IMG/M
3300005564\|Ga0070664_100927354	All Organisms → cellular organisms → Bacteria → Terrabacteria group	817	Open in IMG/M
3300005616\|Ga0068852_102517214	Not Available	535	Open in IMG/M
3300005617\|Ga0068859_100776784	Not Available	1046	Open in IMG/M
3300005843\|Ga0068860_100479593	Not Available	1240	Open in IMG/M
3300006038\|Ga0075365_10530725	Not Available	832	Open in IMG/M
3300006576\|Ga0074047_11629898	Not Available	846	Open in IMG/M
3300006576\|Ga0074047_11969384	Not Available	1147	Open in IMG/M
3300006581\|Ga0074048_12648653	Not Available	800	Open in IMG/M
3300009098\|Ga0105245_12677072	Not Available	552	Open in IMG/M
3300009101\|Ga0105247_11077265	Not Available	632	Open in IMG/M
3300009147\|Ga0114129_11201028	Not Available	945	Open in IMG/M
3300009148\|Ga0105243_10730500	Not Available	968	Open in IMG/M
3300009148\|Ga0105243_11387725	Not Available	723	Open in IMG/M
3300009177\|Ga0105248_11582310	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	742	Open in IMG/M
3300009177\|Ga0105248_12334514	Not Available	609	Open in IMG/M
3300009551\|Ga0105238_11484757	Not Available	706	Open in IMG/M
3300010359\|Ga0126376_11211376	Not Available	770	Open in IMG/M
3300010375\|Ga0105239_10019762	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	7434	Open in IMG/M
3300010375\|Ga0105239_12732339	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	576	Open in IMG/M
3300011119\|Ga0105246_10731720	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	870	Open in IMG/M
3300012684\|Ga0136614_10907357	Not Available	610	Open in IMG/M
3300012908\|Ga0157286_10068697	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	963	Open in IMG/M
3300012951\|Ga0164300_10728015	Not Available	605	Open in IMG/M
3300012988\|Ga0164306_11107700	Not Available	659	Open in IMG/M
3300013306\|Ga0163162_10272577	All Organisms → cellular organisms → Bacteria	1824	Open in IMG/M
3300013307\|Ga0157372_10525982	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1379	Open in IMG/M
3300013308\|Ga0157375_12148868	Not Available	665	Open in IMG/M
3300013308\|Ga0157375_13041793	Not Available	560	Open in IMG/M
3300014325\|Ga0163163_10542533	Not Available	1225	Open in IMG/M
3300014326\|Ga0157380_10954202	Not Available	888	Open in IMG/M
3300014326\|Ga0157380_12080050	Not Available	630	Open in IMG/M
3300014968\|Ga0157379_11766916	Not Available	607	Open in IMG/M
3300014969\|Ga0157376_11344866	Not Available	745	Open in IMG/M
3300015077\|Ga0173483_10145621	Not Available	1040	Open in IMG/M
3300015371\|Ga0132258_10125227	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	6115	Open in IMG/M
3300015371\|Ga0132258_10144106	All Organisms → cellular organisms → Bacteria	5705	Open in IMG/M
3300015371\|Ga0132258_10639450	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	2674	Open in IMG/M
3300015371\|Ga0132258_11032202	All Organisms → cellular organisms → Bacteria	2078	Open in IMG/M
3300015371\|Ga0132258_13605506	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1058	Open in IMG/M
3300015373\|Ga0132257_100890743	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1115	Open in IMG/M
3300015373\|Ga0132257_102981851	Not Available	617	Open in IMG/M
3300015373\|Ga0132257_104183626	Not Available	525	Open in IMG/M
3300015374\|Ga0132255_100218955	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	2704	Open in IMG/M
3300015374\|Ga0132255_100450121	Not Available	1884	Open in IMG/M
3300015374\|Ga0132255_100789103	Not Available	1415	Open in IMG/M
3300017965\|Ga0190266_10319030	Not Available	820	Open in IMG/M
3300017965\|Ga0190266_10378770	Not Available	775	Open in IMG/M
3300018466\|Ga0190268_11618348	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	572	Open in IMG/M
3300018466\|Ga0190268_12318264	Not Available	507	Open in IMG/M
3300018469\|Ga0190270_11352849	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	757	Open in IMG/M
3300018469\|Ga0190270_11860640	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	658	Open in IMG/M
3300018469\|Ga0190270_12784318	Not Available	552	Open in IMG/M
3300018469\|Ga0190270_12832380	Not Available	547	Open in IMG/M
3300018481\|Ga0190271_12141302	Not Available	666	Open in IMG/M
3300018481\|Ga0190271_12406732	Not Available	630	Open in IMG/M
3300019356\|Ga0173481_10003206	All Organisms → cellular organisms → Bacteria	4227	Open in IMG/M
3300019356\|Ga0173481_10108371	Not Available	1081	Open in IMG/M
3300019361\|Ga0173482_10187504	Not Available	837	Open in IMG/M
3300023077\|Ga0247802_1003101	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1926	Open in IMG/M
3300025552\|Ga0210142_1090440	Not Available	602	Open in IMG/M
3300025899\|Ga0207642_10995178	Not Available	540	Open in IMG/M
3300025909\|Ga0207705_10983305	Not Available	652	Open in IMG/M
3300025920\|Ga0207649_10491042	All Organisms → cellular organisms → Bacteria → Terrabacteria group	932	Open in IMG/M
3300025926\|Ga0207659_10871340	Not Available	774	Open in IMG/M
3300025927\|Ga0207687_10048297	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2954	Open in IMG/M
3300025931\|Ga0207644_10944972	Not Available	723	Open in IMG/M
3300025932\|Ga0207690_10063957	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2510	Open in IMG/M
3300025933\|Ga0207706_10314035	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1364	Open in IMG/M
3300025935\|Ga0207709_11550729	Not Available	550	Open in IMG/M
3300025936\|Ga0207670_10864826	Not Available	756	Open in IMG/M
3300025937\|Ga0207669_10572130	Not Available	915	Open in IMG/M
3300025938\|Ga0207704_11511991	Not Available	576	Open in IMG/M
3300025941\|Ga0207711_11338348	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	658	Open in IMG/M
3300025941\|Ga0207711_11498979	Not Available	617	Open in IMG/M
3300025944\|Ga0207661_10115751	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2275	Open in IMG/M
3300025961\|Ga0207712_10828955	Not Available	814	Open in IMG/M
3300026075\|Ga0207708_11607805	Not Available	571	Open in IMG/M
3300027907\|Ga0207428_10127426	Not Available	1949	Open in IMG/M
3300028587\|Ga0247828_10693876	Not Available	633	Open in IMG/M
3300028589\|Ga0247818_10432825	Not Available	890	Open in IMG/M
3300028802\|Ga0307503_10108555	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1196	Open in IMG/M
3300028802\|Ga0307503_10180879	Not Available	983	Open in IMG/M
3300028812\|Ga0247825_11122267	Not Available	573	Open in IMG/M
3300028812\|Ga0247825_11373286	Not Available	517	Open in IMG/M
3300030336\|Ga0247826_10606066	Not Available	841	Open in IMG/M
3300031547\|Ga0310887_10167427	Not Available	1168	Open in IMG/M
3300031547\|Ga0310887_10538169	Not Available	708	Open in IMG/M
3300031854\|Ga0310904_10968529	Not Available	604	Open in IMG/M
3300031858\|Ga0310892_10984359	Not Available	594	Open in IMG/M
3300032013\|Ga0310906_10063041	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1887	Open in IMG/M
3300032013\|Ga0310906_10378560	Not Available	929	Open in IMG/M
3300032122\|Ga0310895_10490748	Not Available	616	Open in IMG/M
3300033550\|Ga0247829_10359183	Not Available	1192	Open in IMG/M
3300033550\|Ga0247829_11791214	Not Available	506	Open in IMG/M
3300033551\|Ga0247830_10320519	Not Available	1192	Open in IMG/M
3300033551\|Ga0247830_11319498	Not Available	577	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Host-Associated	Host-Associated	50.41%
Environmental	Environmental	49.59%

Habitat	Taxonomy	Distribution
Plants	Host-Associated → Plants	50.41%
Terrestrial	Environmental → Terrestrial	46.28%
Aquatic	Environmental → Aquatic	3.31%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	46.28%
Rhizosphere	Host-Associated → Plants → Rhizosphere	33.06%
Rhizoplane	Host-Associated → Plants → Rhizoplane	15.70%
Marine	Environmental → Aquatic → Marine	2.48%
Roots	Host-Associated → Plants → Roots	1.65%
Freshwater	Environmental → Aquatic → Freshwater	0.83%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	38.84%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	19.83%
Soil	Host-Associated → Plants → Rhizosphere → Soil	13.22%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	9.09%
Loam	Environmental → Terrestrial → Soil → Loam	7.44%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	5.79%
Wetlands	Environmental → Aquatic → Marine → Wetlands	2.48%
Ice	Environmental → Aquatic → Freshwater → Ice	0.83%
Soil	Host-Associated → Plants → Rhizoplane → Soil	0.83%
Bulk Soil	Host-Associated → Plants → Roots → Bulk Soil	0.83%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.83%

Habitat	Taxonomy	Distribution
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	19.83%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	19.01%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	13.22%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	13.22%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	9.09%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	7.44%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	5.79%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	3.31%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	3.31%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	2.48%
Unclassified	Environmental → Aquatic → Freshwater → Ice → Unclassified	0.83%
Unclassified	Host-Associated → Plants → Rhizoplane → Soil → Unclassified	0.83%
Unclassified	Host-Associated → Plants → Roots → Bulk Soil → Unclassified	0.83%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	0.83%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	15.70%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	13.22%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	9.09%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	6.61%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	4.96%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	4.96%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	4.96%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	3.31%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	3.31%
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	2.48%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	2.48%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	2.48%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	2.48%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	2.48%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	2.48%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	1.65%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	1.65%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	1.65%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	1.65%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	1.65%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	1.65%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	1.65%
Polar Desert Sand	Environmental → Aquatic → Freshwater → Ice → Unclassified → Polar Desert Sand	0.83%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	0.83%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	0.83%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	0.83%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.83%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere	0.83%
Populus Endosphere	Host-Associated → Plants → Roots → Bulk Soil → Unclassified → Populus Endosphere	0.83%
Switchgrass Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Switchgrass Rhizosphere	0.83%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.83%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2088090015	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300003990	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Goodyear_PhragC_D2	Environmental	Open in IMG/M
3300003996	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_CattailB_D2	Environmental	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300005093	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All Blocks	Environmental	Open in IMG/M
3300005329	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG	Environmental	Open in IMG/M
3300005339	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG	Host-Associated	Open in IMG/M
3300005340	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG	Environmental	Open in IMG/M
3300005345	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-2 metaG	Environmental	Open in IMG/M
3300005354	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG	Host-Associated	Open in IMG/M
3300005356	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG	Host-Associated	Open in IMG/M
3300005365	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3H metaG	Environmental	Open in IMG/M
3300005367	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG	Host-Associated	Open in IMG/M
3300005456	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG	Host-Associated	Open in IMG/M
3300005535	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG	Environmental	Open in IMG/M
3300005543	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG	Host-Associated	Open in IMG/M
3300005564	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG	Host-Associated	Open in IMG/M
3300005616	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2	Host-Associated	Open in IMG/M
3300005617	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2	Host-Associated	Open in IMG/M
3300005843	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2	Host-Associated	Open in IMG/M
3300006038	Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5	Host-Associated	Open in IMG/M
3300006576	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLPA (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006581	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLPB (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300009098	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG	Host-Associated	Open in IMG/M
3300009101	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG	Host-Associated	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009148	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG	Host-Associated	Open in IMG/M
3300009177	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG	Host-Associated	Open in IMG/M
3300009551	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG	Host-Associated	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010375	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG	Host-Associated	Open in IMG/M
3300011119	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG	Host-Associated	Open in IMG/M
3300012684	Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ279 (21.06)	Environmental	Open in IMG/M
3300012908	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S089-202R-1	Environmental	Open in IMG/M
3300012951	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_226_MG	Environmental	Open in IMG/M
3300012988	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_242_MG	Environmental	Open in IMG/M
3300013306	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG	Host-Associated	Open in IMG/M
3300013307	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG	Host-Associated	Open in IMG/M
3300013308	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG	Host-Associated	Open in IMG/M
3300014325	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG	Host-Associated	Open in IMG/M
3300014326	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG	Host-Associated	Open in IMG/M
3300014968	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG	Host-Associated	Open in IMG/M
3300014969	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG	Host-Associated	Open in IMG/M
3300015077	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S178-409R-2 (version 2)	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300017965	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 220 T	Environmental	Open in IMG/M
3300018466	Populus adjacent soil microbial communities from riparian zone of Blue River, Arizona, USA - 249 T	Environmental	Open in IMG/M
3300018469	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 320 T	Environmental	Open in IMG/M
3300018481	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 356 T	Environmental	Open in IMG/M
3300019356	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S073-202C-2 (version 2)	Environmental	Open in IMG/M
3300019361	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S133-311R-2 (version 2)	Environmental	Open in IMG/M
3300022886	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S079-202R-5	Environmental	Open in IMG/M
3300023077	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S076-202R-6	Environmental	Open in IMG/M
3300025552	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Goodyear_PhragC_D2 (SPAdes)	Environmental	Open in IMG/M
3300025899	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025909	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025920	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025926	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025927	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025931	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025932	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025933	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025935	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025936	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes)	Environmental	Open in IMG/M
3300025937	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025938	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025941	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025944	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes)	Environmental	Open in IMG/M
3300025961	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026075	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300027907	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes)	Host-Associated	Open in IMG/M
3300028587	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day3	Environmental	Open in IMG/M
3300028589	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Glucose_Day1	Environmental	Open in IMG/M
3300028802	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 17_S	Environmental	Open in IMG/M
3300028812	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Vanillin_Day48	Environmental	Open in IMG/M
3300030336	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day1	Environmental	Open in IMG/M
3300031547	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D4	Environmental	Open in IMG/M
3300031854	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D1	Environmental	Open in IMG/M
3300031858	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C8D2	Environmental	Open in IMG/M
3300032013	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D3	Environmental	Open in IMG/M
3300032122	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C0D4	Environmental	Open in IMG/M
3300033550	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day4	Environmental	Open in IMG/M
3300033551	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day5	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
GPICI_00375220	2088090015	Soil	LLYCEECGCCSGELGKGWVAYACEDPDGVDEPRIVVYCPPCAASEFGYRPAFAETYVCAWEPLETETTE
JGI10216J12902_1073053431	3300000956	Soil	MRVKVLAAMLTCVECGCCSGELGKAWSAWLCEDPDGIDAPLIAVYCPPCAAREFGYRPEVAANYVCGWETLPSQTDASHTPLEL*
JGI10216J12902_1190234641	3300000956	Soil	CVECGCCSSEGPGWVAMRCDDEDGDGVAMPEIALYCPPCAAGEFDYRPDAGARYVCAWEPVTLAVEDSS*
JGI10216J12902_1217412492	3300000956	Soil	LLYCEECGCCSGELGKGWVAYVCEDPDGVDEARIVVYCPPCAATEFGYRPTFADTYVCAWEPLPGEKADGELDVPLLDP*
Ga0055455_101284701	3300003990	Natural And Restored Wetlands	MLYCVECGCCSGELGQGWVALRCDEPDPDEGDTEPAIALYCPPCAAREFGYRPDVAARYVCAFEHASTGAIADNA*
Ga0055467_102604032	3300003996	Natural And Restored Wetlands	VSGGLLYCEECGCCSGELGKGWVAYTCEDPDGVDEPRIVVYCPPCAASEFGYRPAFAETYVCAWEPLPTEKTDGELDVPLLDP*
Ga0063356_1042706722	3300004463	Arabidopsis Thaliana Rhizosphere	VLDPTFLGVCGGLLYCEECGCCSGELGKGWVAYACEDPDGVDEPRIVVYCPPCAASEFGYRPAFAETYVCAWE
Ga0062594_1000400991	3300005093	Soil	MLYCVECGCCSGELGKGWVAFRCDDPEDDEGPEIAIWCPICAAEEFGYRPHVAATYVRAWERLPSETVEGS*
Ga0062594_1025362981	3300005093	Soil	GCCSGELGKGWVAFRCDDPEDDEGPEVAIWCPVCAAAEFGYRPDIAAMYVRAWEPTPNEIP*
Ga0070683_1004222952	3300005329	Corn Rhizosphere	MACRWGRGAAMLYCVECGCCSGELGKGWVAFRCDDPEDDEGPEIAIWCPICAAEEFGYRPHVAATYVRAWERLPSETVEGS*
Ga0070660_1005867852	3300005339	Corn Rhizosphere	LLYCEECGCCSGELGKGWVAYACEDPDGVDEPRIVVYCPPCAASEFGYRPAFAETYVCAWEPLETETTEAP*
Ga0070689_1014303692	3300005340	Switchgrass Rhizosphere	VLYCVECGCCSGELGKGWVAMRCDDPDPDVINSGTMIGVYCPPCAAAEFGYRPDVAAKYVCAWEPIPEPRPDGVADGV*
Ga0070692_108917871	3300005345	Corn, Switchgrass And Miscanthus Rhizosphere	GVCGGLLYCEECGCCSGELGKGWVAYACEDPDGVDEPRIVVYCPPCAASEFGYRPAFAESYVCAWEPLETETTEAP*
Ga0070675_1005985851	3300005354	Miscanthus Rhizosphere	MACRGARRGRGAAMLYCVECGCCSGELGKGWVAFRCDDPEDDEGPEIAIWCPICAAEEFGYGPHVAATYVRAWERLPSETVEGS*
Ga0070674_1001829534	3300005356	Miscanthus Rhizosphere	MIRIMEVLYCVECGCCSGELGKGWVAMCCDDPSTHIDDEPEIAVYCPPCAAGEFGYRPDIAESYVCAWDPLPAEAADE*
Ga0070674_1007974722	3300005356	Miscanthus Rhizosphere	MRCGTPGGVPGGRVVAAVLYCVECGCCSGELGRGWVAFRCDDPDDGDGPEIAIWCPVCAAEEFGYRPDIAATYVRGWEPLPLDTTDSLG*
Ga0070674_1017485111	3300005356	Miscanthus Rhizosphere	GCCSGELGKGWVAFRCDDPEDDEGPEVAIWCPVCAAAEFGYRPDIAATYVRAWEPTPNEIP*
Ga0070688_1007471171	3300005365	Switchgrass Rhizosphere	VLYCVECGCCSGELGRGWVAFRCDDPDETEPPALALYCPPCAAAEFGYRPDAAASYVCAWEA
Ga0070688_1009947701	3300005365	Switchgrass Rhizosphere	MLYCVQCGCCSGELGKGWVAFRCDDPEDDQGPEIAIWCPVCAAEEFGFRPDIAATYVRAWEPIPSDTASTV*
Ga0070667_1007409971	3300005367	Switchgrass Rhizosphere	VLYCVECGCCSGELGQGWVAFRCDDPDETEPPALALYCPPCAAAEFGYRPDAAASYVCAWEALPSVPEDGPV*
Ga0070678_1024122681	3300005456	Miscanthus Rhizosphere	VPGGRAGGKGCGDVYCVECGCCSAELGKGWVAFRCDDPDDGDGPEIAIWCPVCAAEEFGYRPDIAATYVRGWDPLPR*
Ga0070684_1000687691	3300005535	Corn Rhizosphere	MLYCVECGCCSGELGKGWVAFRCDDPDDGDGPEIAIWCPICAAEEFGYRPDIAEAYVRAWEPNTPRAAEWRRREG
Ga0070672_1009100531	3300005543	Miscanthus Rhizosphere	PSRFRSARGKGERVLYCVECGCCSGELGKGWVAMRCDDPDPDVINSGTMIGVYCPPCAAAEFGYRPDVAANYVCAWEPIPEPRPDGVADGV*
Ga0070672_1014904671	3300005543	Miscanthus Rhizosphere	VGRGAAMLYCVECGCCSGELGKGWVAFRCDDPDDGDGPEIAIWCPICAAEEFGYRPDIAEAYVRAWEPNTPRAAEWRRREGLA*
Ga0070664_1009273542	3300005564	Corn Rhizosphere	VLYCVECGCCSGELGKGWVAMRCDDPDPDVINSGTMIGVYCPPCAAAEFGYRPDVAANYVCAWEPIPEPRPDGVADGV*
Ga0068852_1025172142	3300005616	Corn Rhizosphere	LYCVECGCCSGELGKGWVAFRCDDPDDGDGPEIAIWCPICAAEEFGYRPDIAEAYVRAWEPNTPRAAEWRRREGLA*
Ga0068859_1007767841	3300005617	Switchgrass Rhizosphere	VLYCVECGCCSGELGKGWVAFRCDDPEDDEGPEVAIWCPVCAAAEFGYRPDIAAMYVRAWEPTPNEIP*
Ga0068860_1004795932	3300005843	Switchgrass Rhizosphere	LYCVECGCCSGELGQGWVAFRCDDPDETEPPALALYCPPCAAAEFGYRPDAAASYVCAWEALPSVPEDGPV*
Ga0075365_105307252	3300006038	Populus Endosphere	VLYCVECGCCSGELGKGWVAVRCADPDSDVPERPAIALYCPPCAAAEFGYRPDVAANYVCAWDPVPRRPAEHP*
Ga0074047_116298981	3300006576	Soil	LYCVECGCCSGELGQGWVAFRCDDPDETEPPALALYCPPCASAEFGYRPDAAANYVCAWEALPSVPEDGLVEQRHARPV
Ga0074047_119693841	3300006576	Soil	LYCVECGCCSGELGKGWVAFRCDDPEDDEGPEVAIWCPVCAAAEFGYRPDIAATYVRAWEPTPNEIP*
Ga0074048_126486531	3300006581	Soil	LYCVECGCCSGELGKGWVAFRCDDPEDDEGPEVAIWCPVCAAAEFGYRPDIAATYVRAWEPTPNE
Ga0105245_126770722	3300009098	Miscanthus Rhizosphere	MLYCVECGCCSGELGKGWVAFRCDDPDDGDGPEIAIWCPICAAEEFGYRPDIAEAYVRAWEPNTPRAAEWR
Ga0105247_110772651	3300009101	Switchgrass Rhizosphere	LYCVECGCCSGELGRGWVAFRCDDPDETEPPALALYCPPCAAAEFGYRPDAAASYVCAWEALPSVPEDGLV*
Ga0114129_112010282	3300009147	Populus Rhizosphere	VLYCVECGCCSGELGKGWVAVRCADPDSDVPERPAIALYCPPCAAAEFGYRPDVAANYVCAWDPVPRRSAEHS*
Ga0105243_107305002	3300009148	Miscanthus Rhizosphere	MLYCVECGCCSGELGKGWVAFRCDDPDDGDGPEIAIWCPICAAEEFGYRPDIAEAYVRAWEPNTPRAAEWRRREGLA*
Ga0105243_113877252	3300009148	Miscanthus Rhizosphere	RYLAPASGRWMIRIMEVLYCVECGCCSGELGKGWVAMRCDDPSTHIDDEPEIAVYCPPCAAGEFGYRPDIAESYVCAWDPLPAEAADE*
Ga0105248_115823101	3300009177	Switchgrass Rhizosphere	LYCQECGCCSGELGKGWVGLTCDDPDGIDEPHIVVYCPPCASAEFGYRPDVAENYVCAWEPLPSEPTEAQ*
Ga0105248_123345142	3300009177	Switchgrass Rhizosphere	GTVSAILYCVACGCCSGELGKGWAAFRCDDPEEGQGPEIAIWCPVCAAAEFGYRPEVAAAYVRAWEPRPGDTTDRLG*
Ga0105238_114847571	3300009551	Corn Rhizosphere	VVAAVLYCVECGCWSGELGKGWVAFRCDDPDDGDGPEIAIWCPVCAAEEFGYRPDIAATYVRGWDPLPR*
Ga0126376_112113761	3300010359	Tropical Forest Soil	VLYCVECGCCSGELGRGWVAFCYGNTDPDEGDEPGIAVYCPPCAAAEFGYRPDVAATYVCAWEPLPSVVPPDLLRQDGA*
Ga0105239_100197622	3300010375	Corn Rhizosphere	MLYCVECGCCRGELGKGWVGFRCDDPEDDEGPEIAIWCPICAAEEFGYRPHVAATYVRAWERLPSETVEGS*
Ga0105239_127323391	3300010375	Corn Rhizosphere	VPEGAPGRRGAAVLYCVECGCCSGELGKGWVAFRCDDPEEDDGPEIAIWCPVCAAEEFGYRPEAAATYVRGWEPLPSEPGS*
Ga0105246_107317201	3300011119	Miscanthus Rhizosphere	MLYCVECGCCSAELGKGWVAFRCDDPDDGDGPEIAIWCPVCAAEEFGYRPDIAATYVRGWDPLPR*
Ga0136614_109073572	3300012684	Polar Desert Sand	MIRPAAMLYCEECGCCSGELGKGWSAWLCADPDGVDEPSIVVYRPPCAAAEFGYRPDLAESYVCAWEPLPSERLA*
Ga0157286_100686971	3300012908	Soil	VLYCVECGCCSGELGKGWVAVRCDDPDSDVHERPAIALYCPPCAAAEFGYRPDVAANYVCAWDPVPRRPAEHP*
Ga0164300_107280152	3300012951	Soil	ECGCCSGELGKGWVAFRCDDPDDGDGPEIAIWCPVCAAEEFGYRPDIAATYVRGWEPLPLDTTDSLG*
Ga0164306_111077002	3300012988	Soil	LYCVECGCCSGELGQGWVAFRCDDPDETEPPALALYCPPCAAAEFGYRPDAAAKYVCAWEALPSVPEDGLV*
Ga0163162_102725772	3300013306	Switchgrass Rhizosphere	LYCVECGCCSGELGQGWVAFRCDDPDETEPPALALYCPPCAAAEFGYRPDAAANYVCAWEALPSVAEDGLV*
Ga0157372_105259823	3300013307	Corn Rhizosphere	MLYCVECGCCSGELGKGWVAFRCDDPEDDEGPEIAIWCPICAAEEFGYGPHVAATYVRAWERLPSETVEGS*
Ga0157375_121488681	3300013308	Miscanthus Rhizosphere	SGELGKGWVAFRCDDPDDGDGTEIAIWCPVCAAEEFGFRPDIAATYVRAWEPIPSDTAGTV*
Ga0157375_130417932	3300013308	Miscanthus Rhizosphere	MLYCVQCGCCSGELGKGWVAFRCDDPEDDQGPEIAIWCPVCAAEEFGYRPDIAATYVRGWEPLPLDTPDSLG*
Ga0163163_105425331	3300014325	Switchgrass Rhizosphere	VLYCVECGCCSGELGQGWVAFRCDDPDETEPPALALYCPPCAAAEFGYRPDAAASYVCAWEALPSVP
Ga0157380_109542022	3300014326	Switchgrass Rhizosphere	VLYCVECGCCSGELGKGWVAVRCADPDSDVPERPTIALYCPPCAAAEFGYRPDVAANYVCAWDPIPRRPAERP*
Ga0157380_120800501	3300014326	Switchgrass Rhizosphere	VLYCVECGCCSGELGKGWVAFRCDDPEDDEGPEVAIWCPVCAAAEFGYRPDIAATYVRAWEPTPNEIP*
Ga0157379_117669161	3300014968	Switchgrass Rhizosphere	GVPGGRAGGKGCGDVYCVECGCCSAELGKGWVAFRCDDPDDGDGPEIAIWCPICAAEEFGYRPDIAEAYVRAWEPNTPRAAEWRRREGLA*
Ga0157376_113448661	3300014969	Miscanthus Rhizosphere	LYCVECGCCSGELGKGWVAFRCDDPEDDEGPEVAIWCPVCAAAEFGYRPDIAAMYVRAWEPTPNEIP*
Ga0173483_101456212	3300015077	Soil	MEGTRVLYCVECGCCSGELGQGWVAVRCADPDSDVPERPAIALYCPPCAAAEFGYRPDVAANYVCAWDPVPRRPAEHP*
Ga0132258_101252274	3300015371	Arabidopsis Rhizosphere	MLYCVECGCCSGELGKGWVAFRCDDPDDGDGPEIAIWCPVCAAEEFGYRPDIAATYVRGWEPLPLDTTDSLG*
Ga0132258_101441065	3300015371	Arabidopsis Rhizosphere	VLYCVECGCCSGELGKGWSAFLCTDPDGIEPDRVVVYCPVCAASEFGFKPDVAAMYVRGWEPIPGTIVERN*
Ga0132258_106394507	3300015371	Arabidopsis Rhizosphere	MWGGRRVRVLCVECGRCSGELGRGWVAFRCDDPDPDEGDAEPAIALYCPPCAAAEFDFGPDVAATYVCAWEPLPEVVSDNLLKQDAN*
Ga0132258_110322023	3300015371	Arabidopsis Rhizosphere	VLYCVECGCCSGELGKGWVAFRCDDHPDPDEGEGGPAVAVYCPPCAAAEFGYRPDVAATYVCAWEPLPEPAPDSLADGA*
Ga0132258_136055062	3300015371	Arabidopsis Rhizosphere	VLYCSECGCCSGELPKGWVAYRCDDPDKDNAEPGVAVYCPPCAAAEFGYRPDVAATYVRAWEPPPVEK*
Ga0132257_1008907433	3300015373	Arabidopsis Rhizosphere	GCCSGELGRGWVAFRCDDPDPDEGDAEPAIALYCPPCAAAEFDFGPDVAATYVCAWEPLPEVVSDNLLKQDAN*
Ga0132257_1029818512	3300015373	Arabidopsis Rhizosphere	MGKRMGGGVLYCQECGCCSGELGKGWVALTCDDPDGIDEPDIVVYCPPCAAAEFGYRPDVAENYVCAWEPL
Ga0132257_1041836261	3300015373	Arabidopsis Rhizosphere	VLYCIECGCCSGELGKGWVAVRCDDPDPDVHDSPAIAVYCPPCAAAEFGYRPDVAANYVCAWDPIPRRPAEHP*
Ga0132255_1002189552	3300015374	Arabidopsis Rhizosphere	MWGGRRVRVLCVECGRCSGELGRGWVAFRCDDPDPDEGDAEPAIALYCPPCAAAEFDFGPDVAATHVCAWEPLPEVVFDNLLKQDAN*
Ga0132255_1004501212	3300015374	Arabidopsis Rhizosphere	MPVGRGAAMLYCVECGCCSGELGKGWVAFRCDDPDDGDGPEIAMWCPVCAAEEFGYRPDIAATYVRGWEPLPLDTTDSLG*
Ga0132255_1007891031	3300015374	Arabidopsis Rhizosphere	CGCVSGELGRGWVAFRCDDPDPDEGDPEPAIALYCPPCAAAEFGYRPDIAAEYVCTWDPLPAEAPGPR*
Ga0190266_103190301	3300017965	Soil	VLYCVECGCCSELGRGWVATRCDDPDPDIALYCPPCAAAEFGFRPDVAANYVCAWEP
Ga0190266_103787702	3300017965	Soil	VLYCIECGCCSGELGKGWVAVRCHDPDPDVQDPPAVALYCPPCAAAEFGYRPDVAANYVCAWDPIPRRPAEHP
Ga0190268_116183481	3300018466	Soil	VPMLYRVECGCCSGETGQAWVGLRCDEPDPDEPDDGVNVATYCPVCAAAEFGYRPDVAACYVCAWEPL
Ga0190268_123182641	3300018466	Soil	RMRVVEVLHCVECGCCSGELGKGWLAMRCDDPSADVDDEPEIAVYCPPCAAGEFGYRPQVAENYVCAWDPLPAEATGE
Ga0190270_113528492	3300018469	Soil	VLYCVECGCCSGELGKGWVAMRCDDPSPAVDDEPEIAVYCPPCAAGEFGYRPDVAENYVCAWDPLPAEAAGE
Ga0190270_118606401	3300018469	Soil	VLYCVECGCCSGELGKGWVAYACDNLDGIGESGIAIYCPACAATEFGYRPGVGTSYVRAWEPIPRQVAE
Ga0190270_127843181	3300018469	Soil	MRITAVPLLYCVECGCCSGELGKGWVALRCDEPDADEPDDGIDVAIYCPVCADVEFGYRPDVAACYVCTWEPLPAESMP
Ga0190270_128323801	3300018469	Soil	VTMLYCVECGCCSGELGKGWVALRCDDPDPDEPDDGVNVATYCPVCASAEFGYRPDIAAWYVCAWEPLPVEAAGE
Ga0190271_121413021	3300018481	Soil	VEVLYCVECGCCSGELGKGGVAMRCDDPDPDMGDDPSIALYCPPCAAGEFGYRPDVAERYVCAWDPLPAEVTDRS
Ga0190271_124067322	3300018481	Soil	LYCVECGCCSGELGQGWVAFRCDDPDPDEGDHEPALALYCPPCAASEFGYRPDIAETYVCNWESVPSEIAETS
Ga0173481_100032064	3300019356	Soil	LLYCEECGCCSGELGKGWVAYACEDPDGVDEPRIVVYCPPCAASEFGYRPAFAETYVCAWEPLETETTEAP
Ga0173481_101083712	3300019356	Soil	VLYCVECGCCSGELGKGWVAVRCADPDSDVPERPAIALYCPPCAAAEFGYRPDVAANYVCAWDPVPRRPAEHP
Ga0173482_101875041	3300019361	Soil	MLYCVECGCCSGELGKGWVAFRCDDPEDDEGPEIAIWCPICAAEEFGYGPHVAATYVRAWERLPSETVEGS
Ga0247746_10886141	3300022886	Soil	VLDPTFLGVCGGLLYCEECGCCSGELGKGWVAYACEDPDGVDEPRIVVYCPPCAASEFGYRPAFAETYVCAWEPLETETTEAP
Ga0247802_10031011	3300023077	Soil	LLYCEECGCCSGELGKGWVAYACEDPDGVDEPRIVVYCPPCAASEFGYRPAFAETYVCAWEPLETET
Ga0210142_10904401	3300025552	Natural And Restored Wetlands	MLYCVECGCCSGELGQGWVALRCDEPDPDEGDTEPAIALYCPPCAAREFGYRPDVAARYVCAFEHASTGAIADNA
Ga0207642_109951781	3300025899	Miscanthus Rhizosphere	LYCVECGCCSGELGQGWVAFRCDDPDETEPPALALYCPPCAAAEFGYRPDAAASYVCAWEALPSVPEDGPV
Ga0207705_109833052	3300025909	Corn Rhizosphere	GGTPGKLYCVECGCCSGELGKGWVAFRCDDPEDDEGPEIAIWCPICAAEEFGYRPHVAATYVRAWERLPSETVEGS
Ga0207649_104910422	3300025920	Corn Rhizosphere	VLYCVECGCCSGELGKGWVAMRCDDPDPDVINSGTMIGVYCPPCAAAEFGYRPDVAANYVCAWEPIPEPRPDGVADGV
Ga0207659_108713401	3300025926	Miscanthus Rhizosphere	ECGCCSGELGKGWVAFRCDDPEDDEGPEIAIWCPICAAEEFGYGPHVAATYVRAWERLPSETVEGS
Ga0207687_100482976	3300025927	Miscanthus Rhizosphere	VLYCVECGCCSGELGQGWVAFRCDDPDETEPPALALYCPPCAAAEFGYRPDAAASYVCAWEALPSVPEDGPV
Ga0207644_109449721	3300025931	Switchgrass Rhizosphere	LYCVECGCCSGELGQGWVAFRCDDPDETEPPALALYCPPCAAAEFGYRPDAAASYVCAWEALP
Ga0207690_100639574	3300025932	Corn Rhizosphere	CGCCSGELGKGWVAFRCDDPEDDEGPEIAIWCPICAAEEFGYRPHVAATYVRAWERLPSETVEGS
Ga0207706_103140351	3300025933	Corn Rhizosphere	ECGCCSGELGKGWVAFRCDDPEDDEGPEIAIWCPICAAEEFGYRPHVAATYVRAWERLPSETVEGS
Ga0207709_115507292	3300025935	Miscanthus Rhizosphere	LYCVECGCCSGELGKGWVAFRCDDPDDGDGPEIAIWCPVCAAEEFGYRPDIAATYVRGWEPLPLDTTDSLG
Ga0207670_108648261	3300025936	Switchgrass Rhizosphere	VLYCVECGCCSGELGKGWVAMRCDDPDPDVINSGTMIGVYCPPCAAAEFGYRPDVAANYVCA
Ga0207669_105721302	3300025937	Miscanthus Rhizosphere	LAPASDRWMIRIMEVLYCVECGCCSGELGKGWVAMCCDDPSTHIDDEPEIAVYCPPCAAGEFGYRPDIAESYVCAWDPLPAEAADE
Ga0207704_115119911	3300025938	Miscanthus Rhizosphere	LYCVECGCCSGELGQGWVAFRCDDPDETEPPALALYCPPCAAAEFGYRPDAAASYVCAWEALPSVPEDGPI
Ga0207711_113383482	3300025941	Switchgrass Rhizosphere	IDQECGCCSGELGKGWVGLTCDDPDGIDEPHIVVYCPPCASAEFGYRPDVAENYVCAWEPLPSEPTEAQ
Ga0207711_114989791	3300025941	Switchgrass Rhizosphere	VLYCVECGCCSGELGKGWVAFRCDDPEDDEGPEVAIWCPVCAAAEFGYRPDIAAMYVRAWEPTPNEIP
Ga0207661_101157512	3300025944	Corn Rhizosphere	MLYCVECGCCSGELGKGWVAFRCDDPEDDEGPEIAIWCPICAAEEFGYRPHVAATYVRAWERLPSETVEGS
Ga0207712_108289552	3300025961	Switchgrass Rhizosphere	LYCVECGCCSGELGKGWVAFRCDDPEDDEGPEIAIWCPICAAEEFGYGPHVAATYVRAWERLPSETVEGS
Ga0207708_116078051	3300026075	Corn, Switchgrass And Miscanthus Rhizosphere	LYCVECGCCSGELGKGWVAFRCDDPDDGDGPEIAIWCPICAAEEFGYRPDIAEAYVRAWEPNTPRAAEWRRREGLA
Ga0207428_101274264	3300027907	Populus Rhizosphere	VLYCEECRCCSELGKGWVANVAYDPDGNDDEPPCVALYCPPCAARYFGYRPDVAATYVCTWEPRPDQPTEAT
Ga0247828_106938761	3300028587	Soil	VLYCEECGCCSGELGAGWVAYPCHDPDGIEETRIALYCPPCAAAEFGYRPDAAAKYVCAWEPVPSTEPAETA
Ga0247818_104328252	3300028589	Soil	VLVLYCEQCGCCSGELGAGWVAYPCHDPDGIEETRIALYCPPCAAAEFGYRPDAAAKYVCAWEPVPSTEPAETA
Ga0307503_101085552	3300028802	Soil	MCDGVPGGTVAAMLYCVACGCCSGELGKGWAAFRCDDPEDGQGPEIAIWCPVCAAAEYGYRPGSRRGLRASWEPRPGDTTDRLG
Ga0307503_101808792	3300028802	Soil	MWRAGGRAGGERGAAVLYCVECGCCSGELGKGWVAFRCDDPEDDEGPEVAIWCPVCAGAEFGYRPDIAATYVRAWEPTPNEIP
Ga0247825_111222671	3300028812	Soil	VLYCVECGCCSGELGQGWVAFRCDDPDETEPPALALYCPPCAAAEFGYRPDAAASYVCAWEALPSVPEDG
Ga0247825_113732861	3300028812	Soil	VLVLYCEECGCCSGELGAGWVAYPCHDPDGIEETRIALYCPPCAAAEFGYRPDAAAKYVCAWEPVPSTEPAETA
Ga0247826_106060662	3300030336	Soil	VLYCIECGCCSGELGKGWVAVRCADPDSDVPERPAIALYCPPCAAAEFGYRPDVAANYVCAWDPVPRRPAEHP
Ga0310887_101674272	3300031547	Soil	VLYCVECGCCSQLGTGWVATRCDDPDPDIALYCPPCAAAEFGFRPDVAANYVCAWEPLPLDRRHLEGP
Ga0310887_105381691	3300031547	Soil	VLYCIECGCCSGELGKGWVAVRCDDPDTDVRDAPAIALYCPPCAAAEFGYRPDVAANYVCAWDPIPRRPAERP
Ga0310904_109685291	3300031854	Soil	VLYCVECGCCSELGTGWVATRCDDPDPDIALYCPPCAAAEFGFRPDVAANYVCAWEPLPLDRRHLEGP
Ga0310892_109843591	3300031858	Soil	VLYCIECGCCSGELGKGWVAVRCDDPDPDVRDAPAIALYCPPCAAAEFGYRPDVAANYVCAWDPIPRRPAERP
Ga0310906_100630411	3300032013	Soil	LYCEECGCCSGELGAGWVAYPCHDPDGIEETRIALYCPPCAAAEFGYRPDAAAKYVCAWEPVPSTEPAETA
Ga0310906_103785601	3300032013	Soil	VLYCIECGCCSGELGKGWVAVRCDDPDTDVPDAPAIALYCPPCAAAEFGYRPDVAANYVCAWDPIPRRPAERP
Ga0310895_104907481	3300032122	Soil	YCVECGCCSELGTGWVATRCDDPDPDIALYCPPCAAAEFGFRPDVAANYVCAWEPLPLDRRHLEGP
Ga0247829_103591831	3300033550	Soil	MVRVVEVLYCVECGCCSGELGRGWVAMRCADPSTDIDDEPEIAVYCPPCAAAEFGYRPEIAESYVCAWDPLPAEAADE
Ga0247829_117912142	3300033550	Soil	VIIHDAAMLYCVECGCCSGELGKAWSAWLCEDPDGVEEPTIAVYCPPCAAREFGYRPEVAANYVCAWEPVPGEASRR
Ga0247830_103205191	3300033551	Soil	VLYCVECGCCSGELGRGWVAMRCADPSTDIDDEPEIAVYCPPCAAAEFGYRPEIAESYVCAWDPLPAEAADE
Ga0247830_113194981	3300033551	Soil	VPGGAPGRRVAAMLYCVECGCCSGELGQGWVAFRCDDPDETEPPALALYCPPCAAAEFGYRPDAAASYVCAWEALPSVPEDGPV

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.54
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.54
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NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F072312

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Hidden Markov Model


Click on a Sequence Logo column to get its information.
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