NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Metagenome Family F072240

Metagenome Family F072240

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
Select file to download:
   Download


Overview

Basic Information
Family ID F072240
Family Type Metagenome
Number of Sequences 121
Average Sequence Length 49 residues
Representative Sequence TLDNMVSASGIIDTTGHTTYTDVLAQVKHGDAGSENFQMHYGQLSVFRVG
Number of Associated Samples 67
Number of Associated Scaffolds 121

Quality Assessment
Transcriptomic Evidence No
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 0.00 %
% of genes near scaffold ends (potentially truncated) 98.35 %
% of genes from short scaffolds (< 2000 bps) 79.34 %
Associated GOLD sequencing projects 54
AlphaFold2 3D model prediction No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
Powered by Skylign

Most Common Taxonomy
Group Unclassified (74.380 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine
(60.331 % of family members)
Environment Ontology (ENVO) Unclassified
(97.521 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Saline → Water (saline)
(94.215 % of family members)


 ⦗Top⦘

Multiple Sequence Alignments

Select alignment to view:      

 ⦗Top⦘

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 0.00%    β-sheet: 52.00%    Coil/Unstructured: 48.00%
Feature Viewer
Powered by Feature Viewer

 ⦗Top⦘

Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 121 Family Scaffolds
PF00583Acetyltransf_1 2.48


 ⦗Top⦘

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
UnclassifiedrootN/A74.38 %
All OrganismsrootAll Organisms25.62 %

Visualization
Powered by ApexCharts

Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
2236876008|none_p489498Not Available527Open in IMG/M
3300001735|JGI24520J20079_1011431Not Available510Open in IMG/M
3300002511|JGI25131J35506_1006973All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales → unclassified Cytophagales → Cytophagales bacterium1585Open in IMG/M
3300002511|JGI25131J35506_1010551Not Available1275Open in IMG/M
3300002511|JGI25131J35506_1022633Not Available866Open in IMG/M
3300002511|JGI25131J35506_1023346Not Available851Open in IMG/M
3300002511|JGI25131J35506_1031285Not Available732Open in IMG/M
3300002514|JGI25133J35611_10010252Not Available4116Open in IMG/M
3300002514|JGI25133J35611_10025135All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales → unclassified Cytophagales → Cytophagales bacterium2294Open in IMG/M
3300002518|JGI25134J35505_10012981All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales → unclassified Cytophagales → Cytophagales bacterium2706Open in IMG/M
3300002519|JGI25130J35507_1009457Not Available2487Open in IMG/M
3300002519|JGI25130J35507_1010295All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales → unclassified Cytophagales → Cytophagales bacterium2362Open in IMG/M
3300002760|JGI25136J39404_1006330All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales → unclassified Cytophagales → Cytophagales bacterium2047Open in IMG/M
3300002760|JGI25136J39404_1053115Not Available751Open in IMG/M
3300002760|JGI25136J39404_1053539Not Available748Open in IMG/M
3300002760|JGI25136J39404_1056743Not Available727Open in IMG/M
3300003690|PicViral_1004668All Organisms → Viruses → Predicted Viral3436Open in IMG/M
3300005551|Ga0066843_10181959Not Available592Open in IMG/M
3300006736|Ga0098033_1141097Not Available677Open in IMG/M
3300006736|Ga0098033_1231133Not Available506Open in IMG/M
3300006738|Ga0098035_1001166All Organisms → cellular organisms → Bacteria12816Open in IMG/M
3300006738|Ga0098035_1139434Not Available829Open in IMG/M
3300006750|Ga0098058_1019471All Organisms → Viruses → Predicted Viral1998Open in IMG/M
3300006750|Ga0098058_1062481Not Available1037Open in IMG/M
3300006750|Ga0098058_1210861Not Available504Open in IMG/M
3300006924|Ga0098051_1079401Not Available888Open in IMG/M
3300006926|Ga0098057_1012463Not Available2182Open in IMG/M
3300006927|Ga0098034_1007051Not Available3663Open in IMG/M
3300006927|Ga0098034_1084014Not Available918Open in IMG/M
3300006927|Ga0098034_1238883Not Available503Open in IMG/M
3300008051|Ga0098062_1052650Not Available585Open in IMG/M
3300008216|Ga0114898_1042618All Organisms → Viruses → Predicted Viral1472Open in IMG/M
3300008216|Ga0114898_1043728All Organisms → cellular organisms → Bacteria1450Open in IMG/M
3300008216|Ga0114898_1116951Not Available786Open in IMG/M
3300008216|Ga0114898_1148697Not Available675Open in IMG/M
3300008216|Ga0114898_1225925Not Available510Open in IMG/M
3300008217|Ga0114899_1236776Not Available567Open in IMG/M
3300008217|Ga0114899_1258832Not Available533Open in IMG/M
3300008219|Ga0114905_1030054Not Available2087Open in IMG/M
3300009412|Ga0114903_1032640Not Available1280Open in IMG/M
3300009414|Ga0114909_1041157Not Available1400Open in IMG/M
3300009418|Ga0114908_1110230Not Available912Open in IMG/M
3300009418|Ga0114908_1163591Not Available708Open in IMG/M
3300009418|Ga0114908_1211241Not Available600Open in IMG/M
3300009528|Ga0114920_10902454Not Available605Open in IMG/M
3300009602|Ga0114900_1086439Not Available880Open in IMG/M
3300009604|Ga0114901_1215049Not Available551Open in IMG/M
3300009605|Ga0114906_1108619Not Available990Open in IMG/M
3300010155|Ga0098047_10001090All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales → unclassified Cytophagales → Cytophagales bacterium11126Open in IMG/M
3300010155|Ga0098047_10077482All Organisms → Viruses → Predicted Viral1300Open in IMG/M
3300010155|Ga0098047_10350070Not Available555Open in IMG/M
3300017715|Ga0181370_1004157Not Available1871Open in IMG/M
3300017718|Ga0181375_1001920Not Available3923Open in IMG/M
3300017775|Ga0181432_1080728All Organisms → cellular organisms → Bacteria950Open in IMG/M
3300017775|Ga0181432_1133664Not Available755Open in IMG/M
3300020423|Ga0211525_10332504Not Available624Open in IMG/M
3300021978|Ga0232646_1351595Not Available508Open in IMG/M
3300022225|Ga0187833_10035310Not Available3656Open in IMG/M
3300022225|Ga0187833_10065918Not Available2435Open in IMG/M
3300022227|Ga0187827_10634543Not Available618Open in IMG/M
(restricted) 3300024518|Ga0255048_10163982All Organisms → Viruses → Predicted Viral1089Open in IMG/M
3300025046|Ga0207902_1012117Not Available948Open in IMG/M
3300025046|Ga0207902_1020753All Organisms → cellular organisms → Bacteria771Open in IMG/M
3300025049|Ga0207898_1044223All Organisms → cellular organisms → Bacteria554Open in IMG/M
3300025050|Ga0207892_1042995Not Available528Open in IMG/M
3300025061|Ga0208300_131013Not Available574Open in IMG/M
3300025069|Ga0207887_1028132All Organisms → cellular organisms → Bacteria900Open in IMG/M
3300025069|Ga0207887_1059556Not Available623Open in IMG/M
3300025096|Ga0208011_1004436Not Available4290Open in IMG/M
3300025097|Ga0208010_1070182Not Available751Open in IMG/M
3300025103|Ga0208013_1107724Not Available697Open in IMG/M
3300025112|Ga0209349_1018105Not Available2538Open in IMG/M
3300025112|Ga0209349_1019773All Organisms → Viruses → Predicted Viral2399Open in IMG/M
3300025112|Ga0209349_1036054Not Available1624Open in IMG/M
3300025112|Ga0209349_1083902Not Available933Open in IMG/M
3300025112|Ga0209349_1129889Not Available694Open in IMG/M
3300025112|Ga0209349_1142566Not Available650Open in IMG/M
3300025122|Ga0209434_1007081Not Available4431Open in IMG/M
3300025122|Ga0209434_1033935All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales → unclassified Cytophagales → Cytophagales bacterium1653Open in IMG/M
3300025122|Ga0209434_1091953Not Available877Open in IMG/M
3300025122|Ga0209434_1198007Not Available522Open in IMG/M
3300025125|Ga0209644_1003110All Organisms → cellular organisms → Bacteria3209Open in IMG/M
3300025125|Ga0209644_1014498All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales → unclassified Cytophagales → Cytophagales bacterium1674Open in IMG/M
3300025125|Ga0209644_1027805All Organisms → cellular organisms → Bacteria1251Open in IMG/M
3300025125|Ga0209644_1122536Not Available619Open in IMG/M
3300025125|Ga0209644_1167163Not Available524Open in IMG/M
3300025131|Ga0209128_1001390All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales → unclassified Cytophagales → Cytophagales bacterium16562Open in IMG/M
3300025131|Ga0209128_1001698Not Available14807Open in IMG/M
3300025141|Ga0209756_1019983All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales → unclassified Cytophagales → Cytophagales bacterium3909Open in IMG/M
3300025141|Ga0209756_1020352Not Available3858Open in IMG/M
3300025218|Ga0207882_1042271Not Available640Open in IMG/M
3300025241|Ga0207893_1031482Not Available751Open in IMG/M
3300025241|Ga0207893_1047453Not Available616Open in IMG/M
3300025248|Ga0207904_1055852Not Available662Open in IMG/M
3300025264|Ga0208029_1076934Not Available640Open in IMG/M
3300025267|Ga0208179_1068815Not Available751Open in IMG/M
3300025268|Ga0207894_1029100Not Available988Open in IMG/M
3300025274|Ga0208183_1091381All Organisms → cellular organisms → Bacteria563Open in IMG/M
3300025277|Ga0208180_1138974Not Available501Open in IMG/M
3300025282|Ga0208030_1099323All Organisms → cellular organisms → Bacteria736Open in IMG/M
3300025293|Ga0208934_1067179All Organisms → cellular organisms → Bacteria634Open in IMG/M
3300025300|Ga0208181_1004689All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales → unclassified Cytophagales → Cytophagales bacterium4391Open in IMG/M
3300025300|Ga0208181_1025933Not Available1361Open in IMG/M
3300025300|Ga0208181_1113847Not Available512Open in IMG/M
3300025873|Ga0209757_10054430All Organisms → Viruses → Predicted Viral1179Open in IMG/M
3300025873|Ga0209757_10063043Not Available1101Open in IMG/M
3300025873|Ga0209757_10075407Not Available1014Open in IMG/M
3300025873|Ga0209757_10111422Not Available843Open in IMG/M
3300025873|Ga0209757_10167738Not Available691Open in IMG/M
3300025873|Ga0209757_10187773All Organisms → cellular organisms → Bacteria653Open in IMG/M
3300025873|Ga0209757_10213212Not Available612Open in IMG/M
3300025873|Ga0209757_10222556Not Available599Open in IMG/M
3300025873|Ga0209757_10286637Not Available524Open in IMG/M
3300026103|Ga0208451_1031793Not Available624Open in IMG/M
3300026205|Ga0208406_1025354All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales → unclassified Cytophagales → Cytophagales bacterium1550Open in IMG/M
3300028018|Ga0256381_1056258Not Available596Open in IMG/M
3300028018|Ga0256381_1066158Not Available537Open in IMG/M
3300028039|Ga0256380_1059925Not Available563Open in IMG/M
3300031802|Ga0310123_10886050Not Available526Open in IMG/M
3300034628|Ga0326755_035598Not Available512Open in IMG/M
3300034655|Ga0326746_020995Not Available655Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).


 ⦗Top⦘

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
MarineEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Marine60.33%
Deep OceanEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean24.79%
SeawaterEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Seawater2.48%
SeawaterEnvironmental → Aquatic → Marine → Pelagic → Unclassified → Seawater2.48%
Filtered SeawaterEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Filtered Seawater1.65%
SeawaterEnvironmental → Aquatic → Marine → Strait → Unclassified → Seawater1.65%
MarineEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Marine0.83%
Marine OceanicEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Marine Oceanic0.83%
Deep SubsurfaceEnvironmental → Aquatic → Marine → Oceanic → Sediment → Deep Subsurface0.83%
SeawaterEnvironmental → Aquatic → Marine → Inlet → Unclassified → Seawater0.83%
Marine EstuarineEnvironmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine Estuarine0.83%
MarineEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Marine0.83%
Hydrothermal Vent FluidsEnvironmental → Aquatic → Marine → Hydrothermal Vents → Unclassified → Hydrothermal Vent Fluids0.83%
Marine, Hydrothermal Vent PlumeEnvironmental → Aquatic → Marine → Hydrothermal Vents → Black Smokers → Marine, Hydrothermal Vent Plume0.83%

Visualization
Powered by ApexCharts



Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Taxon OIDSample NameHabitat TypeIMG/M Link
2236876008Marine microbial communities from Columbia River, CM, sample from Cape Meares, GS311-3LG-Deep1200EnvironmentalOpen in IMG/M
3300001735Marine viral communities from the Pacific Ocean - LP-45EnvironmentalOpen in IMG/M
3300002511Marine viral communities from the Pacific Ocean - ETNP_2_1000EnvironmentalOpen in IMG/M
3300002514Marine viral communities from the Pacific Ocean - ETNP_6_85EnvironmentalOpen in IMG/M
3300002518Marine viral communities from the Pacific Ocean - ETNP_6_100EnvironmentalOpen in IMG/M
3300002519Marine viral communities from the Pacific Ocean - ETNP_2_300EnvironmentalOpen in IMG/M
3300002760Marine viral communities from the Pacific Ocean - ETNP_6_1000EnvironmentalOpen in IMG/M
3300003690Hydrothermal vent plume microbial communities from the Mid Cayman Rise - Piccard2013-Plume - Viral/microbial metagenome assemblyEnvironmentalOpen in IMG/M
3300005551Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201302PF89AEnvironmentalOpen in IMG/M
3300006736Marine viral communities from the Subarctic Pacific Ocean - 1_ETSP_OMZ_AT15124 metaGEnvironmentalOpen in IMG/M
3300006738Marine viral communities from the Subarctic Pacific Ocean - 3_ETSP_OMZ_AT15126 metaGEnvironmentalOpen in IMG/M
3300006750Marine viral communities from the Subarctic Pacific Ocean - 19_ETSP_OMZ_AT15317 metaGEnvironmentalOpen in IMG/M
3300006924Marine viral communities from the Subarctic Pacific Ocean - 14B_ETSP_OMZ_AT15311_CsCl metaGEnvironmentalOpen in IMG/M
3300006926Marine viral communities from the Subarctic Pacific Ocean - 18_ETSP_OMZAT15316 metaGEnvironmentalOpen in IMG/M
3300006927Marine viral communities from the Subarctic Pacific Ocean - 2_ETSP_OMZ_AT15125 metaGEnvironmentalOpen in IMG/M
3300008051Marine viral communities from Cariaco Basin, Caribbean Sea - 23_WHOI_OMZEnvironmentalOpen in IMG/M
3300008216Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_GeostarEnvironmentalOpen in IMG/M
3300008217Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_215EnvironmentalOpen in IMG/M
3300008219Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_b05EnvironmentalOpen in IMG/M
3300009412Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_s2EnvironmentalOpen in IMG/M
3300009414Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_906EnvironmentalOpen in IMG/M
3300009418Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_s17EnvironmentalOpen in IMG/M
3300009528Deep subsurface microbial communities from South Pacific Ocean to uncover new lineages of life (NeLLi) - Chile_00310 metaGEnvironmentalOpen in IMG/M
3300009602Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_231EnvironmentalOpen in IMG/M
3300009604Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_s16EnvironmentalOpen in IMG/M
3300009605Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_M9EnvironmentalOpen in IMG/M
3300010155Marine viral communities from the Subarctic Pacific Ocean - 12_ETSP_OMZ_AT15267 metaGEnvironmentalOpen in IMG/M
3300017715Marine viral communities from the Subarctic Pacific Ocean - Lowphox_06 viral metaGEnvironmentalOpen in IMG/M
3300017718Marine viral communities from the Subarctic Pacific Ocean - Lowphox_11 viral metaGEnvironmentalOpen in IMG/M
3300017775Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 55 SPOT_SRF_2014-07-17EnvironmentalOpen in IMG/M
3300020423Marine microbial communities from Tara Oceans - TARA_B100000315 (ERX556027-ERR599062)EnvironmentalOpen in IMG/M
3300021978Hydrothermal fluids microbial communities from Mariana Back-Arc Basin vent fields, Pacific Ocean - Perseverance_CTD_V16A_01_btl17 _150kmerEnvironmentalOpen in IMG/M
3300022225Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP2014_SV_400_PacBio MetaG (Illumina Assembly)EnvironmentalOpen in IMG/M
3300022227Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP2014_SV_150_PacBio MetaG (Illumina Assembly)EnvironmentalOpen in IMG/M
3300024518 (restricted)Seawater microbial communities from Jervis Inlet, British Columbia, Canada - JV7_2_2EnvironmentalOpen in IMG/M
3300025046Marine viral communities from the Pacific Ocean - LP-45 (SPAdes)EnvironmentalOpen in IMG/M
3300025049Marine viral communities from the Pacific Ocean - LP-55 (SPAdes)EnvironmentalOpen in IMG/M
3300025050Marine viral communities from the Pacific Ocean - LP-54 (SPAdes)EnvironmentalOpen in IMG/M
3300025061Marine viral communities from Cariaco Basin, Caribbean Sea - 23_WHOI_OMZ (SPAdes)EnvironmentalOpen in IMG/M
3300025069Marine viral communities from the Pacific Ocean - LP-38 (SPAdes)EnvironmentalOpen in IMG/M
3300025096Marine viral communities from the Subarctic Pacific Ocean - 7_ETSP_OMZ_AT15161 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025097Marine viral communities from the Subarctic Pacific Ocean - 2_ETSP_OMZ_AT15125 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025103Marine viral communities from the Subarctic Pacific Ocean - 16_ETSP_OMZ_AT15313 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025112Marine viral communities from the Pacific Ocean - ETNP_2_130 (SPAdes)EnvironmentalOpen in IMG/M
3300025122Marine viral communities from the Pacific Ocean - ETNP_2_300 (SPAdes)EnvironmentalOpen in IMG/M
3300025125Marine viral communities from the Pacific Ocean - ETNP_2_1000 (SPAdes)EnvironmentalOpen in IMG/M
3300025131Marine viral communities from the Pacific Ocean - ETNP_6_100 (SPAdes)EnvironmentalOpen in IMG/M
3300025141Marine viral communities from the Pacific Ocean - ETNP_6_85 (SPAdes)EnvironmentalOpen in IMG/M
3300025218Marine viral communities from the Deep Pacific Ocean - MSP-103 (SPAdes)EnvironmentalOpen in IMG/M
3300025241Marine viral communities from the Deep Pacific Ocean - MSP-121 (SPAdes)EnvironmentalOpen in IMG/M
3300025248Marine viral communities from the Deep Pacific Ocean - MSP-118 (SPAdes)EnvironmentalOpen in IMG/M
3300025264Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_s12 (SPAdes)EnvironmentalOpen in IMG/M
3300025267Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_Geostar (SPAdes)EnvironmentalOpen in IMG/M
3300025268Marine viral communities from the Deep Pacific Ocean - MSP-114 (SPAdes)EnvironmentalOpen in IMG/M
3300025274Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_51 (SPAdes)EnvironmentalOpen in IMG/M
3300025277Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_s16 (SPAdes)EnvironmentalOpen in IMG/M
3300025282Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_M9 (SPAdes)EnvironmentalOpen in IMG/M
3300025293Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_s2 (SPAdes)EnvironmentalOpen in IMG/M
3300025300Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_s6 (SPAdes)EnvironmentalOpen in IMG/M
3300025873Marine viral communities from the Pacific Ocean - ETNP_6_1000 (SPAdes)EnvironmentalOpen in IMG/M
3300026103Marine viral communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling - metaG 3321_4155 (SPAdes)EnvironmentalOpen in IMG/M
3300026205Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201302PF89A (SPAdes)EnvironmentalOpen in IMG/M
3300028018Seawater viral communities from deep brine pools at the bottom of the Mediterranean Sea - LS1 1600mEnvironmentalOpen in IMG/M
3300028039Seawater viral communities from deep brine pools at the bottom of the Mediterranean Sea - LS1 2300mEnvironmentalOpen in IMG/M
3300031802Marine microbial communities from Western Arctic Ocean, Canada - CB6_AW_1057EnvironmentalOpen in IMG/M
3300034628Seawater viral communities from Mid-Atlantic Ridge, Atlantic Ocean - 543_2961EnvironmentalOpen in IMG/M
3300034655Seawater viral communities from Mid-Atlantic Ridge, Atlantic Ocean - 494_2800EnvironmentalOpen in IMG/M

Geographical Distribution
Zoom:     Powered by OpenStreetMap


 ⦗Top⦘

Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID Sample Taxon ID Habitat Sequence
none_48949812236876008Marine EstuarineGHTTYTDVLAQVKNGHASNSENFQMHYGQLSVFRVG
JGI24520J20079_101143123300001735MarineMASASGIIDTTGHTTYTDVLAQVKNGHGSSSENFQMHYGQLSVFRVG*
JGI25131J35506_100697323300002511MarineVSASGIIDTTGHTTYTDLLAYVKHADSGSENFQMHYGQLSVFRVG*
JGI25131J35506_101055123300002511MarineVSASGIIDTTGHTTYTDVLAQVKHADSGSENFQMHYGQLSVFRVG*
JGI25131J35506_102263323300002511MarineMVSASGIIDTTGHTTYTDVEAYVKHADSGSENFQMHYGQLSVFRVG*
JGI25131J35506_102334623300002511MarineFDAAVQRVAATLDNMVSASGIIDTTGHTDYTDLLAQVKHGDSGSENFQMHYGQLSVFRVG
JGI25131J35506_103128523300002511MarineATATLENTVSASGIIDTTGHTTYTDVTAQVKHNDAGPENFQMHYGQMSVFRVG*
JGI25133J35611_1001025253300002514MarineDCAVQRVAATLDNMVSASGIIDTTGHTTYTDLLAQVKHGDAGSENFQMHYGQLSVFRIG*
JGI25133J35611_1002513513300002514MarineVYPGYDCAVQRVAATLDNMVSASGIIDTTGHTTXTXLLAQVKHGDAGSENFQMHYGQLSVFRVG*
JGI25134J35505_1001298113300002518MarinePGYDCAVQRVAATLDNMVSASGIIDTTGHTTXTXLLAQVKHGDAGSENFQMHYGQLSVFRVG*
JGI25130J35507_100945733300002519MarineSGIIDTTGHTDYTDVLAQVKNGHASNSENFQMHYGQLSVFRVG*
JGI25130J35507_101029513300002519MarinePGYDCAVQRVAATLDNMVSASGIIDTTGHTTYTDLLAQVKHGDAGSENFQMHYGQLSVFRVG*
JGI25136J39404_100633023300002760MarineSGIIDTTGHTTYTDVIAQVKNGHASNSENFQMHYGQMSVFRVG*
JGI25136J39404_105311523300002760MarineLDNMVSASGIIDTTGHTTYTDVKASVKHADSGSENFQMHYGQLSVFRVG*
JGI25136J39404_105353923300002760MarineTLENMVSASGIIDTTGHTTYTDVLAQVKHADAGSENFQMHYGQLSVFRVG*
JGI25136J39404_105674323300002760MarineASDTFPGYDCAVQRVAATLDNMVSASGIIDTTGHTTYTDVKASVKHADSGSENFQMHYGQLSVFRVG*
PicViral_100466813300003690Marine, Hydrothermal Vent PlumeVSASGIIDTTGHTTYTDVLAQVKNGHASSSENFQMHYGQLSVFRVG*
Ga0066843_1018195923300005551MarineRVAATLDNMVSASGIIDTTGHTTYTDLLAQVKHGDAGSENFQMHYGQLSVFRVG*
Ga0098033_114109713300006736MarineDCAVQKVAATLDNMVSASGIIDTTGHTTYTDVIAQVKNGHGSNSENFQMHYGQLSVFRIG
Ga0098033_123113323300006736MarineGFDAAVQRVVATLENMVSASGIIDTTGHTTYTDVLAQVKNGHASNSENFQMHYGQLSVFRVG*
Ga0098035_100116613300006738MarineVSASGIIDTTGHTTYTDLLAQVKHGDAGSENFQMHYGQLSVFRVG*
Ga0098035_113943413300006738MarineQRVAATLDNMVSASGIIDTTGHTTYTDLLAQVKHGDAGSENFQMHYGQLSVFRVG*
Ga0098058_101947123300006750MarineCAVQRVAATLDNMVSASGIIDTTGHTTYTDLLAYVKHGDGGSENFQMHYGQLSVFRVG*
Ga0098058_106248123300006750MarineASGIIDTTGHTTYTDLLAQVKHGDAGSENFQMHYGQLSVFRVG*
Ga0098058_121086123300006750MarineSGIIDTTGHTTYTDLLAQVKHGDAGSENFQMHYGQLSVFRVG*
Ga0098051_107940113300006924MarineTLDNMASASGIIDTTGHTDYTDVLAQVKNGHGSNSENFQMHYGQLSVFRVG*
Ga0098057_101246313300006926MarineLDNMASASGIIDTTGHTDYTDVLAQVKNGHASNSENFQMHYGQLSVFRVG*
Ga0098034_100705143300006927MarineASGIIDTTGHTDYTDVLAQVKNGHASNSENFQMHYGQLSVFRVG*
Ga0098034_108401413300006927MarineVAATLDNMVSASGIIDTTGHTTYTDLLAQVKHGDAGSENFQMHYGQLSVFRVG*
Ga0098034_123888323300006927MarineIDTTGHTTYTDLLAQVKHGDAGSENFQMHYGQLSVFRVG*
Ga0098062_105265013300008051MarineDNMASASGIIDTTGHTDYTDVLAQVKNGHGSNSENFQMHYGQLSVFRVG*
Ga0114898_104261813300008216Deep OceanVYRSTATLENTASASGIIDTTGHTTYTDVTAQVKHDNAGSENFQMHYGQLSVFRVG*
Ga0114898_104372813300008216Deep OceanHTTYTDVLAQVKNGHASNSENFQMHYGQMSVFRVG*
Ga0114898_111695113300008216Deep OceanTGHTTYTDVTAQVKHDNAGSENFQMHYGQLSVFRVG*
Ga0114898_114869723300008216Deep OceanCAVQKVAATLDNMASASGIIDTTGHTTYTDVLAQVKNGHGSSSENFQMHYGQLSVFRVG*
Ga0114898_122592523300008216Deep OceanQRVAATLDNMVSASGIIDTTGHTTYTDVLAQVKNGHGSNSENFQMHYGQLSVFRVG*
Ga0114899_123677613300008217Deep OceanTLDNMVSASGIIDTTGHTTYTDVLAQVKHGDAGSENFQMHYGQLSVFRVG*
Ga0114899_125883223300008217Deep OceanTGHTDYTDVLAQVKNGHASNSENFQMHYGQLSVFRVG*
Ga0114905_103005413300008219Deep OceanTGHTTYTDVTAQVKHNDAGSENFQMHYGQMSVFRVG*
Ga0114903_103264023300009412Deep OceanVYRSTATLENTVSASGIIDTTGHTTYTDVTAQVKHNDAGSENFQMHYGQLSVFRVG*
Ga0114909_104115713300009414Deep OceanAAVYRSTATLENTASASGIIDTTGHTTYTDVTAQVKHDNAGSENFQMHYGQLSVFRVG*
Ga0114908_111023013300009418Deep OceanNMASASGIIDTTGHTDYTDVLAQVKNGHGSSSENFQMHYGQLSVFRVG*
Ga0114908_116359113300009418Deep OceanTGHTTYTDVLAQVKNGHASNSENFQMHYGQMSVFRVG*
Ga0114908_121124123300009418Deep OceanIDTTGHTTYTDVIAQVKNGHASNSENFQMHYGQMSVFRVG*
Ga0114920_1090245423300009528Deep SubsurfaceHTTYTDVTAQVKHGDSGSENFQMHYGQLSVFRVG*
Ga0114900_108643923300009602Deep OceanVQKVAATLDNMASASGIIDTTGHTTYTDVLAQVKNGHGSSSENFQMHYGQLSVFRVG*
Ga0114901_121504913300009604Deep OceanTATLENTVSASGIIDTTGHTTYTDVTAQVKHNDAGSENFQMHYGQLSVFRVG*
Ga0114906_110861913300009605Deep OceanLDNMVSASGIIDTTGHTTYTDVIAQVKNGHGSNSENFQMHYGQMSVFRVG*
Ga0098047_1000109013300010155MarineHTDYTDVLAQVKNGHASNSENFQMHYGQLSVFRVG*
Ga0098047_1007748223300010155MarineASGIIDTTGHTTYTDVLAQVKNGHGSNSENFQMHYGQLSVFRVG*
Ga0098047_1035007023300010155MarineDTTGHTTYTDLLAQVKHGDAGSENFQMHYGQLSVFRVG*
Ga0181370_100415723300017715MarinePGYDCAVQRVAATLDNMVSASGIIDTTGHTTYTDLLAQVKHGDAGSENFQMHYGQLSVFRVG
Ga0181375_100192053300017718MarineQRVAATLDNMVSASGIIDTTGHTTYTDLLAQVKHGDAGSENFQMHYGQLSVFRVG
Ga0181432_108072823300017775SeawaterAVQRVAATLDNMVSISGIIDTTGHTTYTNVLAQVKHADSGSENFQMHYGQLSVFRVG
Ga0181432_113366423300017775SeawaterVATLENMVSASGIIDTTGHTDYTDVLAQVKNGHASNSEYFQMHYGQMSVFRVG
Ga0211525_1033250423300020423MarineTLDNMVSASGIIDTTGHTTYTDLLAQVKHGDAGSENFQMHYGQLSVFRVG
Ga0232646_135159513300021978Hydrothermal Vent FluidsIIDTTGHTTYTDVKASVKHADSGSENFQMHYGQLSVFRVG
Ga0187833_1003531013300022225SeawaterSGIIDTTGHTTYTDLLAQVKHGDAGSENFQMHYGQLSVFRVG
Ga0187833_1006591813300022225SeawaterDTTGHTTYTDLLAQVKHGDAGSENFQMHYGQLSVFRVG
Ga0187827_1063454323300022227SeawaterNMASASGIIDTTGHTDYTDVLAQVKNGHASNSENFQMHYGQLSVFRVG
(restricted) Ga0255048_1016398223300024518SeawaterASGIIDTTGHTTYTDVLAQVKNGHASNSENFQMHYGQLSVFRVG
Ga0207902_101211723300025046MarineGHTTYTDVTAQVKHGDSGSENFQMHYGQLSVFRVG
Ga0207902_102075313300025046MarineMVSASGIIDTTGHTTYTDVLAQVKNGHASNAENFQMHYGQLSVFRVG
Ga0207898_104422323300025049MarineNMVSASGIIDTTGHTTYTDVLAQVKHADSGSENFQMHYGQLSVFRVG
Ga0207892_104299523300025050MarineKVAITLDNMASASGIIDTTGHTTYTDVLAQVKNGHASNSENFQMHYGQMSVFRVG
Ga0208300_13101323300025061MarineAATLDNMASASGIIDTTGHTDYTDVLAQVKNGHGSNSENFQMHYGQLSVFRVG
Ga0207887_102813223300025069MarineCAVQRVVATLENMVSASGIIDTTGHTTYTDVLAQVKNGHASNSENFQMHYGQLSVFRVG
Ga0207887_105955613300025069MarineTLDNMVSASGIIDTTGHTTYTDILAQVKNGHGSSAENFQMHYGQLSVFRVG
Ga0208011_100443613300025096MarineYDAAVQKVAATLDNMASASGIIDTTGHTDYTDVLAQVKNGHASNSENFQMHYGQLSVFRV
Ga0208010_107018213300025097MarineHTSYTDVLAQVKNGHGSNSENFQMHYGQLSVFRVG
Ga0208013_110772423300025103MarineIIDTTGHTDYTDVLAQVKNGHASNSENFQMHYGQLSVFRVG
Ga0209349_101810533300025112MarineVQRVAATLDNMVSASGIIDTTGHTTYTDVLAQVKHGDAGSENFQMHYGQLSVFRVG
Ga0209349_101977313300025112MarineGIIDTTGHTTYTDVLAQVKNGHGSNSENFQMHYGQLSVFRVG
Ga0209349_103605423300025112MarineATLDNMVSASGIIDTTGHTTYTDLLAQVKHGDAGSENFQMHYGQLSVFRVG
Ga0209349_108390213300025112MarineVVYPGYDCAVQRVAATLDNMVSASGIIDTTGHTTYTDLLAQVKHGDAGSENFQMHYGQLSVFRVG
Ga0209349_112988913300025112MarineMVSASGIIDTTGHTTYTDLLAQVKHGDAGSENFQMHYGQLSVFRVG
Ga0209349_114256623300025112MarineVSASGIIDTTGHTTYTDVLAQVKHGDAGSENFQMHYGQLSVFRVG
Ga0209434_100708113300025122MarineVQRVAATLDNMVSASGIIDTTGHTTYTDLLAQVKHGDAGSENFQMHYGQLSVFRVG
Ga0209434_103393523300025122MarineSASGIIDTTGHTTYTDLLAQVKHGDAGSENFQMHYGQLSVFRVG
Ga0209434_109195313300025122MarineSASGIIDTTGHTDYTDVLAQVKNGHASNSENFQMHYGQLSVFRVG
Ga0209434_119800723300025122MarineGSVVYPGYDCAVQRVAATLDNMVSASGIIDTTGHTTYTDLLAQVKHGDAGSENFQMHYGQLSVFRVG
Ga0209644_100311033300025125MarineVATLENMVSVSGIIDTTGHTTYTDVIAQVKNGHASNSENFQMHYGQMSVFRVG
Ga0209644_101449813300025125MarineLDNMASASGIIDTTGHTTYTDVLAQVKNGHGSSSENFQMHYGQLSVFRVG
Ga0209644_102780513300025125MarineTLDNMASASGIIDTTGHTTYTDVLAQVKNGHGSSSENFQMHYGQLSVFRVG
Ga0209644_112253623300025125MarineTTGHTTYTDVLAQVKHADAGSENFQMHYGQLSVFRVG
Ga0209644_116716313300025125MarineTLDNMVSASGIIDTTGHTTYTDVLAQVKHADSGSENFQMHYGQLSVFRVG
Ga0209128_100139013300025131MarineGIIDTTGHTTYTDLLAQVKHGDAGSENFQMHYGQLSVFRVG
Ga0209128_100169883300025131MarineGSVVYPGYDCAVQRVAATLDNMVSASGIIDTTGHTTYTDLLAQVKHGDAGSENFQMHYGQLSVFRIG
Ga0209756_101998313300025141MarineDTGGSVVYPGYDCAVQRVAATLDNMVSASGIIDTTGHTTYTDLLAQVKHGDAGSENFQMHYGQLSVFRVG
Ga0209756_102035213300025141MarineSVVYPGYDCAVQRVAATLDNMVSASGIIDTTGHTTYTDVLAQVKHGDAGSENFQMHYGQLSVFRVG
Ga0207882_104227123300025218Deep OceanTLENMVSASGIIDTTGHTTYTDVKAQVKHADSGSENFQMHYGQLSVFRIA
Ga0207893_103148223300025241Deep OceanGHTTYTDVKASVKHADSGSEYFQMHYGQLSVFRIG
Ga0207893_104745313300025241Deep OceanYPGYDAAVQRAVATLENMVSASGIIDTTGHTTYTDVKAQVKHADSGSENFQMHYGQLSVFRIA
Ga0207904_105585213300025248Deep OceanSASGIIDTTGHTTYTDVLAQVKHADSGSENFQMHYGQLSVFRVG
Ga0208029_107693413300025264Deep OceanTGHTTYTDVTAQVKHNDAGSENFQMHYGQMSVFRVG
Ga0208179_106881523300025267Deep OceanDTTGHTTYTDILAQVKNGHGSNSENFQMHYGQLSVFRVG
Ga0207894_102910013300025268Deep OceanAVQKVAATLDNMASASGIIDTTGHTDYTDVLAQVKNGHASNSENFQMHYGQLSVFRVG
Ga0208183_109138113300025274Deep OceanVSISGIIDTTGHTTYTDILAQVKNGHASNSENFQMHYGQLSVFRVG
Ga0208180_113897423300025277Deep OceanTVSASGIIDTTGHTTYTDVTAQVKHNDAGSENFQMHYGQLSVFRVG
Ga0208030_109932313300025282Deep OceanIIDTTGHTDYTDVLAQVKNGHATNSENFQMHYGQLSVFRVG
Ga0208934_106717923300025293Deep OceanGHTTYTDVTAQVKHNDAGSENFQMHYGQLSVFRVG
Ga0208181_100468963300025300Deep OceanTATFPGFDAAVYRSTATLENTASASGIIDTTGHTTYTDVTAQVKHDNAGSENFQMHYGQLSVFRVG
Ga0208181_102593313300025300Deep OceanATLDNMVSASGIIDTTGHTTYTDVKASVKHADSGSENFQMHYGQLSVFRVG
Ga0208181_111384723300025300Deep OceanLENMVSASGIIDTTGHTTYTDVLAQVKNGHASNSENFQMHYGQMSVFRVG
Ga0209757_1005443013300025873MarineCAVQRAVATLENMVSASGIIDTTGHTTYTDVLAQVKNGHASNSENFQMHYGQLSVFRIG
Ga0209757_1006304323300025873MarineQRVAATLDNMVSASGIIDTTGHTTYTDVKASVKHADSGSENFQMHYGQLSVFRVG
Ga0209757_1007540713300025873MarineVSVSGIIDTTGHTTYTDVIARVKNGHASNSENFQMHYGQLSVFRVG
Ga0209757_1011142213300025873MarineGIIDTTGHTTYTDVIAQVKNGHGSSSENFQMHYGQLSVFRIG
Ga0209757_1016773823300025873MarineFPGFDCAVQRVAATLDNMVSASGIIDTTGHTTYTDVKASVKHADSGSENFQMHYGQLSVFRVG
Ga0209757_1018777313300025873MarineVSASGIIDTTGHTDYTDVLAQVKNGHATNSENFQMHYGQLSVFRVG
Ga0209757_1021321223300025873MarineASASGIIDTTGHTTYTDVLAQVKNGHGSNSENFQMHYGQLSVFRVG
Ga0209757_1022255623300025873MarineATLDNMVSASGIIDTTGHTTYTDVTAQVKHGDSGSENFQMHYGQLSVFRVG
Ga0209757_1028663713300025873MarineIDTTGHTTYTDVIAQVKNGHGSNSENFQMHYGQLSVFRVG
Ga0208451_103179323300026103Marine OceanicTLDNMASASGIIDTTGHTTYTDILAQVKNGHGSNSENFQMHYGQLSVFRVG
Ga0208406_102535413300026205MarineAVTLDNMASASGIIDTTGHTDYTDVLAQVKNGHGSNSENFQMHYGQLSVFRVG
Ga0256381_105625823300028018SeawaterDAAVQKVAATLDNMASASGIIDTTGHTDYTDVLAQVKNGHGSSSENFQMHYGQLSVFRVG
Ga0256381_106615813300028018SeawaterTTGHTDYTDVLAQVKNGHGSSSENFQMHYGQLSVFRVG
Ga0256380_105992523300028039SeawaterSASGIIDTTGHTTYTDVKASVKHADAGSENFQMHYGQLSVFRVG
Ga0310123_1088605013300031802MarineASGIIDTTGHTTYTDVLAQVKNGHASSSENFQMHYGQMSVFRVG
Ga0326755_035598_348_5123300034628Filtered SeawaterRVAATLDNMVSASGIIDTTGHTTYTDVLAQVKHADSGSEYFQMHYGQLSVFRVG
Ga0326746_020995_507_6473300034655Filtered SeawaterMVSASGIIDTTGHTTYTDVTAQIKHGDAGSENFQMHYGQLSVFRVG

 ⦗Top⦘


Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.