Metagenome / Metatranscriptome Family F072175

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F072175
Family Type	Metagenome / Metatranscriptome
Number of Sequences	121
Average Sequence Length	49 residues
Representative Sequence	MAKWNFVAMGQAGLTGWTRTAARPVARLIARRTGRPEADILALIG
Number of Associated Samples	99
Number of Associated Scaffolds	121

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	95.04 %
% of genes near scaffold ends (potentially truncated)	93.39 %
% of genes from short scaffolds (< 2000 bps)	95.87 %
Associated GOLD sequencing projects	94
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.43

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (53.719 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil (29.752 % of family members)
Environment Ontology (ENVO)	Unclassified (36.364 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (52.066 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 53.42% β-sheet: 0.00% Coil/Unstructured: 46.58%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.43
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.43
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 121 Family Scaffolds
PF10009	DUF2252	19.01
PF06897	DUF1269	6.61
PF00884	Sulfatase	1.65
PF13191	AAA_16	0.83
PF00654	Voltage_CLC	0.83
PF06736	TMEM175	0.83

COG ID	Name	Functional Category	% Frequency in 121 Family Scaffolds
COG4803	Uncharacterized membrane protein	Function unknown [S]	6.61
COG0038	H+/Cl- antiporter ClcA	Inorganic ion transport and metabolism [P]	0.83
COG3548	Uncharacterized membrane protein	Function unknown [S]	0.83

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	53.72 %
Unclassified	root	N/A	46.28 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	53.72 %
Unclassified	root	N/A	46.28 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	53.72 %
Unclassified	root	N/A	46.28 %

Name	Rank	Taxonomy	Distribution
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	49.59 %
Unclassified	root	N/A	46.28 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.65 %

Name	Rank	Taxonomy	Distribution
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	48.76 %
Unclassified	root	N/A	46.28 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.65 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	46.28 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	38.84 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.65 %
Acidimicrobiia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	46.28 %
Streptosporangiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	9.92 %
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	2.48 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.65 %
Nakamurellales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Nakamurellales	0.83 %
Acidimicrobiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales	0.83 %
Micromonosporales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales	0.83 %
Streptomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales	0.83 %
Propionibacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	46.28 %
Treboniaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae	9.92 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2.48 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.65 %
Streptomycetaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae	0.83 %
Microthrixaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Microthrixaceae	0.83 %
Kribbellaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Kribbellaceae	0.83 %
Micromonosporaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae	0.83 %
Nakamurellaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Nakamurellales → Nakamurellaceae	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	46.28 %
Trebonia	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia	9.92 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2.48 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.65 %
Nakamurella	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Nakamurellales → Nakamurellaceae → Nakamurella	0.83 %
Streptomyces	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	0.83 %
Kribbella	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Kribbellaceae → Kribbella	0.83 %
Couchioplanes	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Couchioplanes	0.83 %
Candidatus Microthrix	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Microthrixaceae → Candidatus Microthrix	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	46.28 %
Trebonia kvetii	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	9.92 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2.48 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.65 %
unclassified Kribbella	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Kribbellaceae → Kribbella → unclassified Kribbella	0.83 %
Couchioplanes caeruleus	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Couchioplanes → Couchioplanes caeruleus	0.83 %
Candidatus Microthrix parvicella	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Microthrixaceae → Candidatus Microthrix → Candidatus Microthrix parvicella	0.83 %
Nakamurella	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Nakamurellales → Nakamurellaceae → Nakamurella	0.83 %
Streptomyces	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	46.28 %
Trebonia kvetii	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	9.92 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2.48 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.65 %
Kribbella sp. VKM Ac-2568	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Kribbellaceae → Kribbella → unclassified Kribbella → Kribbella sp. VKM Ac-2568	0.83 %
Candidatus Microthrix parvicella RN1	strain	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Microthrixaceae → Candidatus Microthrix → Candidatus Microthrix parvicella → Candidatus Microthrix parvicella RN1	0.83 %
Couchioplanes caeruleus	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Couchioplanes → Couchioplanes caeruleus	0.83 %
Nakamurella	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Nakamurellales → Nakamurellaceae → Nakamurella	0.83 %
Streptomyces	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	0.83 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2199352024\|deeps__Contig_196022	Not Available	1192	Open in IMG/M
3300004294\|Ga0068945_1199913	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	636	Open in IMG/M
3300004465\|Ga0068944_1152328	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	548	Open in IMG/M
3300004475\|Ga0068969_1067137	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	620	Open in IMG/M
3300004503\|Ga0068981_1135172	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	505	Open in IMG/M
3300004505\|Ga0068941_1148047	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	577	Open in IMG/M
3300004594\|Ga0068976_1018569	Not Available	626	Open in IMG/M
3300004599\|Ga0068933_1265962	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	863	Open in IMG/M
3300004600\|Ga0068964_1001861	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	604	Open in IMG/M
3300004602\|Ga0068960_1019030	All Organisms → cellular organisms → Bacteria	1165	Open in IMG/M
3300004612\|Ga0068961_1024966	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	641	Open in IMG/M
3300004616\|Ga0068930_1412469	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	516	Open in IMG/M
3300005563\|Ga0068855_100754934	All Organisms → cellular organisms → Bacteria	1037	Open in IMG/M
3300006162\|Ga0075030_101514153	All Organisms → cellular organisms → Bacteria → Proteobacteria	525	Open in IMG/M
3300006795\|Ga0075520_1354935	All Organisms → cellular organisms → Bacteria → Terrabacteria group	597	Open in IMG/M
3300006953\|Ga0074063_10011840	All Organisms → cellular organisms → Bacteria → Proteobacteria	515	Open in IMG/M
3300006953\|Ga0074063_10030114	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	711	Open in IMG/M
3300009518\|Ga0116128_1174875	Not Available	608	Open in IMG/M
3300009520\|Ga0116214_1145357	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	882	Open in IMG/M
3300009520\|Ga0116214_1180232	Not Available	791	Open in IMG/M
3300009525\|Ga0116220_10093196	Not Available	1273	Open in IMG/M
3300009672\|Ga0116215_1199498	Not Available	882	Open in IMG/M
3300009683\|Ga0116224_10326366	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	730	Open in IMG/M
3300009683\|Ga0116224_10537372	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	558	Open in IMG/M
3300009698\|Ga0116216_10963013	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	510	Open in IMG/M
3300009764\|Ga0116134_1040857	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1801	Open in IMG/M
3300009824\|Ga0116219_10813480	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	509	Open in IMG/M
3300010154\|Ga0127503_10535170	Not Available	657	Open in IMG/M
3300010333\|Ga0134080_10426860	Not Available	617	Open in IMG/M
3300010341\|Ga0074045_10503543	Not Available	778	Open in IMG/M
3300010362\|Ga0126377_11972200	Not Available	660	Open in IMG/M
3300010379\|Ga0136449_103103577	Not Available	645	Open in IMG/M
3300010379\|Ga0136449_103496009	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	599	Open in IMG/M
3300010379\|Ga0136449_104338291	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	524	Open in IMG/M
3300011003\|Ga0138514_100045855	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	871	Open in IMG/M
3300011039\|Ga0138593_106492	Not Available	1200	Open in IMG/M
3300011040\|Ga0138587_138769	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	502	Open in IMG/M
3300011058\|Ga0138541_1099115	Not Available	1083	Open in IMG/M
3300011061\|Ga0138534_1116545	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	765	Open in IMG/M
3300011062\|Ga0138582_1001688	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	742	Open in IMG/M
3300011062\|Ga0138582_1084680	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	694	Open in IMG/M
3300011074\|Ga0138559_1155958	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	556	Open in IMG/M
3300012354\|Ga0137366_11230586	Not Available	507	Open in IMG/M
3300014164\|Ga0181532_10053458	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2658	Open in IMG/M
3300014165\|Ga0181523_10514700	Not Available	660	Open in IMG/M
3300015371\|Ga0132258_12773196	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	1221	Open in IMG/M
3300017821\|Ga0187812_1186810	Not Available	663	Open in IMG/M
3300017821\|Ga0187812_1255962	Not Available	557	Open in IMG/M
3300017823\|Ga0187818_10279051	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	732	Open in IMG/M
3300017928\|Ga0187806_1151009	Not Available	767	Open in IMG/M
3300017932\|Ga0187814_10278038	Not Available	638	Open in IMG/M
3300017936\|Ga0187821_10144196	Not Available	897	Open in IMG/M
3300017937\|Ga0187809_10318890	Not Available	576	Open in IMG/M
3300017942\|Ga0187808_10382746	Not Available	642	Open in IMG/M
3300017942\|Ga0187808_10488627	Not Available	569	Open in IMG/M
3300017942\|Ga0187808_10562944	Not Available	530	Open in IMG/M
3300017943\|Ga0187819_10629667	Not Available	607	Open in IMG/M
3300017948\|Ga0187847_10050310	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2382	Open in IMG/M
3300017955\|Ga0187817_10604891	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	699	Open in IMG/M
3300018001\|Ga0187815_10223419	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	797	Open in IMG/M
3300018006\|Ga0187804_10426756	Not Available	589	Open in IMG/M
3300018006\|Ga0187804_10508713	Not Available	542	Open in IMG/M
3300018012\|Ga0187810_10322335	Not Available	641	Open in IMG/M
3300018020\|Ga0187861_10287189	Not Available	708	Open in IMG/M
3300018037\|Ga0187883_10078765	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1726	Open in IMG/M
3300018038\|Ga0187855_10255049	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1029	Open in IMG/M
3300018040\|Ga0187862_10571672	Not Available	672	Open in IMG/M
3300018044\|Ga0187890_10556485	Not Available	646	Open in IMG/M
3300018431\|Ga0066655_10980037	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	583	Open in IMG/M
3300019787\|Ga0182031_1330482	Not Available	1517	Open in IMG/M
3300024347\|Ga0179591_1107944	Not Available	2202	Open in IMG/M
3300025443\|Ga0208081_1040098	Not Available	793	Open in IMG/M
3300025474\|Ga0208479_1081758	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Nakamurellales → Nakamurellaceae → Nakamurella	605	Open in IMG/M
3300025625\|Ga0208219_1036329	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1305	Open in IMG/M
3300025634\|Ga0208589_1100440	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	682	Open in IMG/M
3300025650\|Ga0209385_1085025	Not Available	1060	Open in IMG/M
3300025939\|Ga0207665_10446902	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	991	Open in IMG/M
3300025939\|Ga0207665_10986550	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	670	Open in IMG/M
3300027634\|Ga0209905_1011796	Not Available	1141	Open in IMG/M
3300027911\|Ga0209698_10732536	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	751	Open in IMG/M
3300028713\|Ga0307303_10081199	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	724	Open in IMG/M
3300028773\|Ga0302234_10470882	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	537	Open in IMG/M
3300028792\|Ga0307504_10057344	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1132	Open in IMG/M
3300028865\|Ga0302291_10332814	Not Available	523	Open in IMG/M
3300028877\|Ga0302235_10030213	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2788	Open in IMG/M
3300029956\|Ga0302150_10051061	Not Available	1618	Open in IMG/M
3300029986\|Ga0302188_10345396	Not Available	611	Open in IMG/M
3300030294\|Ga0311349_10543977	Not Available	1098	Open in IMG/M
3300030294\|Ga0311349_11913900	Not Available	546	Open in IMG/M
3300030580\|Ga0311355_10336786	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	1500	Open in IMG/M
3300030707\|Ga0310038_10338218	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	668	Open in IMG/M
3300030707\|Ga0310038_10441255	Not Available	559	Open in IMG/M
3300030862\|Ga0265753_1016823	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	1046	Open in IMG/M
3300030904\|Ga0308198_1031646	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	758	Open in IMG/M
3300030943\|Ga0311366_10785323	Not Available	826	Open in IMG/M
3300031170\|Ga0307498_10355235	Not Available	564	Open in IMG/M
3300031199\|Ga0307495_10102447	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	681	Open in IMG/M
3300031226\|Ga0307497_10709901	Not Available	520	Open in IMG/M
3300031231\|Ga0170824_114750437	Not Available	1000	Open in IMG/M
3300031521\|Ga0311364_11293648	Not Available	723	Open in IMG/M
3300031708\|Ga0310686_100768055	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	784	Open in IMG/M
3300031719\|Ga0306917_10377370	Not Available	1105	Open in IMG/M
3300031726\|Ga0302321_100603259	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Couchioplanes → Couchioplanes caeruleus	1223	Open in IMG/M
3300031778\|Ga0318498_10446189	Not Available	573	Open in IMG/M
3300032160\|Ga0311301_10821704	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Kribbellaceae → Kribbella → unclassified Kribbella → Kribbella sp. VKM Ac-2568	1271	Open in IMG/M
3300032160\|Ga0311301_10945287	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	1152	Open in IMG/M
3300032160\|Ga0311301_10998634	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	1107	Open in IMG/M
3300032160\|Ga0311301_11193275	Not Available	977	Open in IMG/M
3300032160\|Ga0311301_12546260	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	570	Open in IMG/M
3300032783\|Ga0335079_10472901	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1340	Open in IMG/M
3300032783\|Ga0335079_12016065	Not Available	555	Open in IMG/M
3300032828\|Ga0335080_10641865	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1112	Open in IMG/M
3300032828\|Ga0335080_11853437	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	587	Open in IMG/M
3300032829\|Ga0335070_11048435	Not Available	751	Open in IMG/M
3300032892\|Ga0335081_11106228	Not Available	912	Open in IMG/M
3300032892\|Ga0335081_11293803	Not Available	823	Open in IMG/M
3300032892\|Ga0335081_12479043	Not Available	536	Open in IMG/M
3300032896\|Ga0335075_10747810	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Microthrixaceae → Candidatus Microthrix → Candidatus Microthrix parvicella → Candidatus Microthrix parvicella RN1	928	Open in IMG/M
3300032955\|Ga0335076_11687747	Not Available	522	Open in IMG/M
3300033134\|Ga0335073_10012898	All Organisms → cellular organisms → Bacteria	11715	Open in IMG/M
3300033134\|Ga0335073_10693125	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	1115	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	98.35%
Host-Associated	Host-Associated	1.65%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	74.38%
Aquatic	Environmental → Aquatic	23.97%
Plants	Host-Associated → Plants	1.65%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	64.46%
Freshwater	Environmental → Aquatic → Freshwater	22.31%
Peat	Environmental → Terrestrial → Peat	9.09%
Sediment	Environmental → Aquatic → Sediment	1.65%
Rhizoplane	Host-Associated → Plants → Rhizoplane	1.65%
Agricultural Field	Environmental → Terrestrial → Agricultural Field	0.83%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	50.41%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	21.49%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	12.40%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	9.09%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	1.65%
Loam	Environmental → Terrestrial → Soil → Loam	1.65%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	0.83%
Unclassified	Environmental → Terrestrial → Agricultural Field → Unclassified	0.83%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.83%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	0.83%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	42.15%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	13.22%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	10.74%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	9.09%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	6.61%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	4.96%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	2.48%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	1.65%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	1.65%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	1.65%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	1.65%
Unclassified	Environmental → Aquatic → Freshwater → Groundwater → Unclassified	0.83%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	0.83%
Unclassified	Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified	0.83%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.83%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	0.83%

Habitat	Taxonomy	Distribution
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	29.75%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	13.22%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	9.92%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	6.61%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	4.96%
Arctic Peat Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil	4.96%
Fen	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Fen	4.96%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	2.48%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	2.48%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	1.65%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland	1.65%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	1.65%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	1.65%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	1.65%
Bog	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog	1.65%
Soil	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil	0.83%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	0.83%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	0.83%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.83%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.83%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.83%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.83%
Bog Forest Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil	0.83%
Thawing Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Thawing Permafrost	0.83%
Bog	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Bog	0.83%
Soil	Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified → Soil	0.83%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.83%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	0.83%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2199352024	Bare-fallow DEEP SOIL	Environmental	Open in IMG/M
3300004294	Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 33 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300004465	Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 32 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300004475	Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 62 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300004503	Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 79 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300004505	Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 29 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300004594	Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 73 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300004599	Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 21 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300004600	Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 56 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300004602	Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 52 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300004612	Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 53 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300004616	Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 15 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300005563	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2	Host-Associated	Open in IMG/M
3300006162	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2012	Environmental	Open in IMG/M
3300006795	Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE PermafrostAB12-B	Environmental	Open in IMG/M
3300006953	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHMB (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300009518	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_16_150	Environmental	Open in IMG/M
3300009520	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_1_NS metaG	Environmental	Open in IMG/M
3300009525	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_7_NC metaG	Environmental	Open in IMG/M
3300009672	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_2_FS metaG	Environmental	Open in IMG/M
3300009683	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_b_LC metaG	Environmental	Open in IMG/M
3300009698	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_3_AS metaG	Environmental	Open in IMG/M
3300009764	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_19_40	Environmental	Open in IMG/M
3300009824	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_6_BS metaG	Environmental	Open in IMG/M
3300010154	Soil microbial communities from Willow Creek, Wisconsin, USA - WC-WI-TBF metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010333	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_40cm_2_24_1 metaG	Environmental	Open in IMG/M
3300010341	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM2	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010379	Sb_50d combined assembly	Environmental	Open in IMG/M
3300011003	Agricultural soil microbial communities from Tamara ranch near Red Deer, Alberta, Canada - d1t9i015	Environmental	Open in IMG/M
3300011039	Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 20 (Metagenome Metatranscriptome) (version 2)	Environmental	Open in IMG/M
3300011040	Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 79 (Metagenome Metatranscriptome) (version 2)	Environmental	Open in IMG/M
3300011058	Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 22 (Metagenome Metatranscriptome) (version 2)	Environmental	Open in IMG/M
3300011061	Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 12 (Metagenome Metatranscriptome) (version 2)	Environmental	Open in IMG/M
3300011062	Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 72 (Metagenome Metatranscriptome) (version 2)	Environmental	Open in IMG/M
3300011074	Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 40 (Metagenome Metatranscriptome) (version 2)	Environmental	Open in IMG/M
3300012354	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_60_16 metaG	Environmental	Open in IMG/M
3300014164	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin11_30_metaG	Environmental	Open in IMG/M
3300014165	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin05_30_metaG	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300017821	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW-S_2	Environmental	Open in IMG/M
3300017823	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_3	Environmental	Open in IMG/M
3300017928	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_1	Environmental	Open in IMG/M
3300017932	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW-S_4	Environmental	Open in IMG/M
3300017936	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SourceSoil_1	Environmental	Open in IMG/M
3300017937	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_4	Environmental	Open in IMG/M
3300017942	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_3	Environmental	Open in IMG/M
3300017943	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_4	Environmental	Open in IMG/M
3300017948	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_4_10	Environmental	Open in IMG/M
3300017955	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_2	Environmental	Open in IMG/M
3300018001	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW-S_5	Environmental	Open in IMG/M
3300018006	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_4	Environmental	Open in IMG/M
3300018012	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_5	Environmental	Open in IMG/M
3300018020	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_10_100	Environmental	Open in IMG/M
3300018037	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_20_10	Environmental	Open in IMG/M
3300018038	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_8_10	Environmental	Open in IMG/M
3300018040	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_10_150	Environmental	Open in IMG/M
3300018044	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_21_10	Environmental	Open in IMG/M
3300018431	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_104	Environmental	Open in IMG/M
3300019787	Permafrost microbial communities from Stordalen Mire, Sweden - 812S3M metaG (PacBio error correction)	Environmental	Open in IMG/M
3300024347	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_08_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300025443	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 415-1 shallow-092012 (SPAdes)	Environmental	Open in IMG/M
3300025474	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 415-3 deep-072012 (SPAdes)	Environmental	Open in IMG/M
3300025625	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 53-2 shallow-072012 (SPAdes)	Environmental	Open in IMG/M
3300025634	Arctic peat soil from Barrow, Alaska - NGEE Surface sample F53-2 shallow-092012 (SPAdes)	Environmental	Open in IMG/M
3300025650	Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE PermafrostAB12-B (SPAdes)	Environmental	Open in IMG/M
3300025939	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300027634	Thawing permafrost microbial communities from the Arctic, studying carbon transformations - Permafrost 812S1M	Environmental	Open in IMG/M
3300027911	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2012 (SPAdes)	Environmental	Open in IMG/M
3300028713	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_184	Environmental	Open in IMG/M
3300028773	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_N3_2	Environmental	Open in IMG/M
3300028792	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 19_S	Environmental	Open in IMG/M
3300028865	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Fen_N1_4	Environmental	Open in IMG/M
3300028877	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_N3_3	Environmental	Open in IMG/M
3300029956	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Bog_N1_2	Environmental	Open in IMG/M
3300029986	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Bog_E2_1	Environmental	Open in IMG/M
3300030294	II_Fen_E3 coassembly	Environmental	Open in IMG/M
3300030580	II_Palsa_N1 coassembly	Environmental	Open in IMG/M
3300030707	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_4_PS metaG (v2)	Environmental	Open in IMG/M
3300030862	Metatranscriptome of soil microbial communities from Maridalen valley, Oslo, Norway - NSE5 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030904	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_202 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030943	III_Fen_N2 coassembly	Environmental	Open in IMG/M
3300031170	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 12_S	Environmental	Open in IMG/M
3300031199	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 7_S	Environmental	Open in IMG/M
3300031226	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 10_S	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031521	III_Fen_E2 coassembly	Environmental	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300031719	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2)	Environmental	Open in IMG/M
3300031726	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Fen_T0_1	Environmental	Open in IMG/M
3300031778	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f24	Environmental	Open in IMG/M
3300032160	Sb_50d combined assembly (MetaSPAdes)	Environmental	Open in IMG/M
3300032783	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.3	Environmental	Open in IMG/M
3300032828	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.4	Environmental	Open in IMG/M
3300032829	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.3	Environmental	Open in IMG/M
3300032892	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.5	Environmental	Open in IMG/M
3300032896	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.4	Environmental	Open in IMG/M
3300032955	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.5	Environmental	Open in IMG/M
3300033134	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.2	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
deeps_03743690	2199352024	Soil	MPDWNVVTMGQVGLTRWTGEVAQPVARSIARRTGQPEARR
Ga0068945_11999131	3300004294	Peatlands Soil	MAKWNFVAMGQTGLTGWTRTAARPVARLIARRTGRPEADILALIGAGFLAIALIDFLRNV
Ga0068944_11523282	3300004465	Peatlands Soil	MAKWNFVAMGQVGLTGWTGKAARPVAQAIARRTGRPESQILALIGAGFLA
Ga0068969_10671371	3300004475	Peatlands Soil	MAKWNFVAMGQAGLTGWTRTAARPVARLIARRTGRPEADILA
Ga0068981_11351722	3300004503	Peatlands Soil	MAKWNFVAMGQVGLTGWTRELAKPVARSIARRTGRPEAQILSLIGGMFLAI
Ga0068941_11480472	3300004505	Peatlands Soil	VAKWNFVAMGQAGLTGRARTAARPAARLIARRTGRPEADILALIGAGFLAITVIDFLR
Ga0068976_10185691	3300004594	Peatlands Soil	MAKWNFVAMGQAGLTGWTRTAAQPVARLIARRTGRPEADILAL
Ga0068933_12659622	3300004599	Peatlands Soil	VAKWNFVAMGQAGLTGWTRTAARPIARLIARRTGRPEADIVALTGAGFLAIAVTGFLRN
Ga0068964_10018611	3300004600	Peatlands Soil	VAKWNFVAMGQAGLTGWTRTAARPVARLIARRTGRPEADI
Ga0068960_10190302	3300004602	Peatlands Soil	VAKWNFAAMGQAGLTGWTRTAARPVARLIARRTGRPEADILALIGAGFLAITVIDFLRNV
Ga0068961_10249662	3300004612	Peatlands Soil	VAKWNFAAMGQAGLTGRTRTAARPVARLSARRTGRPEADI
Ga0068930_14124691	3300004616	Peatlands Soil	VAKWNFVAMGQAGLTGWTRTAAQPVARLIARRTGRPEADILA
Ga0068855_1007549341	3300005563	Corn Rhizosphere	MSKWNFVAMGQVGLTGWTREVAKPVARSIARRTGRPEPEILSLIGAAFLAVTLIDFKGGT
Ga0075030_1015141531	3300006162	Watersheds	PQMPEWNVVTMGQAGLTRWAREVAQPVARSIARRTGQPEARR*
Ga0075520_13549351	3300006795	Arctic Peat Soil	MSKWNFVAMGQAGLTGWTKEVAQPVAQSLSRRTGRPEAQILA
Ga0074063_100118402	3300006953	Soil	GAPQMPEWNFVTMGQVGLTCWTGEVAQPVARPVARRTGQPEARR*
Ga0074063_100301141	3300006953	Soil	MSKWNFVAMGQVGLTGWTREIAKPVARSIARRTGRPEAEILSLIGA
Ga0116128_11748751	3300009518	Peatland	MPKLNLVAMGEVGLTGWTRVAARPVARAVARRTGRPEAE
Ga0116214_11453572	3300009520	Peatlands Soil	MPKWNFVAMGQAGLTGWTGKAARPVARAIARKTGRPEAQILSLIGAVFLAKTLIGFL
Ga0116214_11802321	3300009520	Peatlands Soil	MAKWNLAAMGRAGLTGRTRVIAQPVARAIARRTGRSEADILSLIGAA
Ga0116220_100931962	3300009525	Peatlands Soil	MAKWNFVAMGQVGLTGWTRTVAQPVAHSIARRTGRPEAQI
Ga0116215_11994981	3300009672	Peatlands Soil	MAKWNFVAMGQVGLTGWTKTVAQPVAHSIARRTGRPEAQILSLIGA
Ga0116224_103263662	3300009683	Peatlands Soil	MAKWNFVAMGQTGLTGWTRTAARPVARLIARRTGRPEADILALIGAGFLTIT
Ga0116224_105373721	3300009683	Peatlands Soil	MAKWNLAAMGRAGLTGRTRVIAQPVARAIARRTGRSEADILSLMGAALLAMALINFV
Ga0116216_109630131	3300009698	Peatlands Soil	MAKWNFVAMGQAGLTGWTRTAARPVARLIARRTGRPEADILALIG
Ga0116134_10408571	3300009764	Peatland	MGQVGLTGWTGKAARPVARELARRTGRPEAQILALIGAVF
Ga0116219_108134801	3300009824	Peatlands Soil	MAKWNFVAMGQTGLTGWTRTAARPVARLIARRTGRPEADILALIGAGFLAITLIDFLRNV
Ga0127503_105351702	3300010154	Soil	MSKWNFVAMGQVGLTGWTREVAQPVARSIARGTGQPEARR*
Ga0134080_104268601	3300010333	Grasslands Soil	MSKWNFVAMGQVGLTGWTRKVAKPVAHSIARRTGRPEAEI
Ga0074045_105035431	3300010341	Bog Forest Soil	MAKWDFVAMGQVGLTGWTRAAARPVARAVARRTGRPEA
Ga0126377_119722001	3300010362	Tropical Forest Soil	MPRWDYVAMGQVGLTGWRRRAAQPVACVIARRTGRPESEILSLIGAGFL
Ga0136449_1031035772	3300010379	Peatlands Soil	MAKWNFVAMGQVGLTGWTRVAARPVAQSIARRTGRPEAQILSLIGAAFLAMAVVNFL
Ga0136449_1034960092	3300010379	Peatlands Soil	MRRWNFVAMGQVGLTGWTGKVARPVAHSIARRTGRP
Ga0136449_1043382912	3300010379	Peatlands Soil	MAKWNFVAMGQAGLTGWTRTAAQPVARMIARRTGRPEADILARIGAGFLGFPGIDFF
Ga0138514_1000458551	3300011003	Soil	MVKRIKEGAPQMSKWNFVAMGQVGLTGWTREVAKPVARSIARRTGRPEAEILSLIGAAFLATTLI
Ga0138593_1064921	3300011039	Peatlands Soil	VAKWNFVAMGQAGLTGWTRTAARPVARLIARRTGR
Ga0138587_1387692	3300011040	Peatlands Soil	MAKWNFVAMGQVGLTGWTRELAKPVARSIARRTGRPEAQILSLIGGMFLAIALVNFVREVDAV
Ga0138541_10991151	3300011058	Peatlands Soil	VAKWNFVAMGQAGLTGWTRTAARPVARLIARRTGRPEADILALIGAGFLAITVIGFLRNV
Ga0138534_11165451	3300011061	Peatlands Soil	MAKWNFVAMGQAGLTGWTRTAAQPVARLIARRTGRPEADILALIGAGFLAIAVIH
Ga0138582_10016882	3300011062	Peatlands Soil	VAKWNFAAMGQAGLTGRARTAAQPVARLIARRTGRPEA
Ga0138582_10846802	3300011062	Peatlands Soil	MAKWNFVAMGQAGLTGWTRTAAQPVARLIARRTGRPEA
Ga0138559_11559581	3300011074	Peatlands Soil	MAKWNFVAMGQAGLTGWTRTAARPVAQLIARRTGRPEADILALIGAG
Ga0137366_112305861	3300012354	Vadose Zone Soil	MPEWNFAALGQAGLTGWTRAAVHPAARWIARRTGRPEAENLPLIGAAFL
Ga0181532_100534584	3300014164	Bog	MAKWNLVAMGQVGLSGWTGKAARPLALAIARRTGR
Ga0181523_105147002	3300014165	Bog	MPKWNFVAMGQAGLTGRTRNIARPIARAIAHRTGRSEADILSLMGAALLALALV
Ga0132258_127731961	3300015371	Arabidopsis Rhizosphere	MGQAGLTGRARTAAQPVAHSIARRTGRPEEEILSLIGAAFLAMALINF
Ga0187812_11868102	3300017821	Freshwater Sediment	MAKWNFVAMGQAGLTGWTGKAAQPLARTIARRTGRPEAQILSLIGAGFLAIALIDFLREVDAVI
Ga0187812_12559621	3300017821	Freshwater Sediment	MTKWNFTAMGQVGLTGQTRAAAQPVARAVARWTGRPEAQILSLIGAGFLAISLID
Ga0187818_102790512	3300017823	Freshwater Sediment	MTKWNFTAMGQVGLTGQTRAAAQPVARAVARWTGRPEAQILSLIGAGFL
Ga0187806_11510091	3300017928	Freshwater Sediment	MAKWNFVAMGQTGLTGWTGKAARPLAGAIARRTGRPEAQILSLIGAGFLAIALIDFLRQVDA
Ga0187814_102780381	3300017932	Freshwater Sediment	MAKWNFVAMGQTGLTGWTGKAARPLAGAIARRTGRPEAQILSLIGAGFLAIALID
Ga0187821_101441961	3300017936	Freshwater Sediment	MTKWNFTAMGQVGLTGQTRAVAQRVARVAACWTGRPEAQILS
Ga0187809_103188902	3300017937	Freshwater Sediment	MTKWNFTAMGQVGLTGQTRAVAERVARVAARWTGRPEAQILSLIGAGFLAISLIDFLRQV
Ga0187808_103827462	3300017942	Freshwater Sediment	MPKWNLVAMGQAGLTGWTGKAAQPVARAIARRTGRPEAQILSLIGAGFLAIALIDFLRQV
Ga0187808_104886272	3300017942	Freshwater Sediment	MANQMAKWNFVAMGQAGLTGSTGKAAQPLARAIARRTGRPEAQILSLIGAGFLAIALIDFLR
Ga0187808_105629442	3300017942	Freshwater Sediment	VEAGGDGPGGLTGWTGKAARPVARAVARRTGRSEAQILALIGAAFLAI
Ga0187819_106296671	3300017943	Freshwater Sediment	MTKWNFVAMGQVGLNGWTKVAAELVARPVARWAGRPEAQIACVEIAM
Ga0187847_100503101	3300017948	Peatland	MPKLNLVAMGEVGLTGWTRVAARPVARAVARRTGRPEAEILAIIGAAFLVITLINF
Ga0187817_106048911	3300017955	Freshwater Sediment	MAKWNFVAMGQTGLTGWTGKAARPLAHAIARRTGRPEAQILSLIGAGF
Ga0187815_102234192	3300018001	Freshwater Sediment	MAKWNLVAMGQAGLTGRTGKAARPLARAIARRTGRPEPQILSLIGAGFLAIALIDFLRQVDTVIA
Ga0187804_104267562	3300018006	Freshwater Sediment	MANQMAKWNFVAMGQAGLAGSTGKAARPLARAIARRTGRPEAQILSLIG
Ga0187804_105087132	3300018006	Freshwater Sediment	MSKWNFVAMGQAGLTGWTREVAQPVARRIARRTGRPEAEI
Ga0187810_103223351	3300018012	Freshwater Sediment	MAKWNFVAMGQAGLTDWTGKAAQPLARTIARRTGRPEAQILSLIGAGFLAIALIDFLRE
Ga0187861_102871891	3300018020	Peatland	MAKWNLVAMGQVGLTGWTGKAARPLALAIARRTGRPESQILALIGAGFLAITLISVL
Ga0187883_100787651	3300018037	Peatland	MAKWNLVAMGQVGLSGWTGKAARPLALAIARRTGRPESQILALIGAG
Ga0187855_102550491	3300018038	Peatland	MAKWNLVAMGQVGLTGWTGKAARPLALAIARRTGR
Ga0187862_105716721	3300018040	Peatland	MPKWNFVAMGQAGLTGRTRNIARPIARAIAHRTGRS
Ga0187890_105564852	3300018044	Peatland	MPKWNYVAMGQAGLTGWTRTVAQPVARAVARRTGRPEGEILSLIGAAFLAIALINF
Ga0066655_109800372	3300018431	Grasslands Soil	MSKWNFVAMGQVGLTGWTREVAKPVARAIARRTGRPEAEILSLIGAAFLATTLIDFIR
Ga0182031_13304822	3300019787	Bog	MRKWNYVAMGQIGLSGITAKVARPLASSISRRTGRPEGQVLALIGQDFSPSL
Ga0179591_11079444	3300024347	Vadose Zone Soil	NFVTMGQVGLTRWTGEVAQPVARSIARRTGQPEARR
Ga0208081_10400981	3300025443	Arctic Peat Soil	MSRWNFVAMGQAGLTGSTRKVAEPIARSIGRRTGRPEGQILSLIGAVFLAIAVVDFLRNVDS
Ga0208479_10817581	3300025474	Arctic Peat Soil	MREREREVVAMPRMPKWNFVAMGQAGLTGWTGQAARPVARAVARRTGRPEAEILSLIGAVFLAITLIDFLRN
Ga0208219_10363291	3300025625	Arctic Peat Soil	MPKWNYMAMGQVGLTGWTGKAARPVAHSLARRTGRPEAEILSL
Ga0208589_11004401	3300025634	Arctic Peat Soil	MPKWNYMAMGQVGLTGWTGKAARPVAHSLARRTGRPEA
Ga0209385_10850251	3300025650	Arctic Peat Soil	MSRWNFVAMGQAGLTGSTRKVAEPIARSIGRRTGRPEGQILSLIGAVFLAIAVV
Ga0207665_104469021	3300025939	Corn, Switchgrass And Miscanthus Rhizosphere	MSKWNFVAMGQVGLTGWTREVAKPVARSIARRTGR
Ga0207665_109865502	3300025939	Corn, Switchgrass And Miscanthus Rhizosphere	MSKWNFVAMGQVGLTGWTREVAKPVARSIARRTGRPEAQIL
Ga0209905_10117961	3300027634	Thawing Permafrost	MRKWNYVAMGQIGLSGITAKVARPLASSISRRTGRPEGQVLA
Ga0209698_107325362	3300027911	Watersheds	MAKWNLVAMGQAGLTGRTGKAAQPLARAIARRTGRPEAQILSLIGAGFLAIALINFL
Ga0307303_100811991	3300028713	Soil	MSKWNFVAMGQVGLTGWTREIAKPVARSIARRTGRPEAEILSLIGAAFLA
Ga0302234_104708821	3300028773	Palsa	MPEWNFAAMGQAGLTGRARDIARPVARLIARRTGRPEA
Ga0307504_100573443	3300028792	Soil	MPKWNFVAMGQAGLTGRAQDIARPVARGVARRTGRPEADILSLIGAASLTIALIGFLREVDTV
Ga0302291_103328142	3300028865	Fen	MSKWNLVAMGQAGLTGWTQQVAQPVAHSISRRTGRPEAQILALIGASF
Ga0302235_100302134	3300028877	Palsa	MPEWNFAAMGQAGLTGRARDIARPVARLIARRTGRPEAGILSLIGAASLTITLINFL
Ga0302150_100510611	3300029956	Bog	MRKWNYVAMGQIGLSGITAKVARPLASSISRRTGRPEGQVLALIGAGFL
Ga0302188_103453961	3300029986	Bog	MRKWNYVAMGQIGLSGITAKVARPLASSISRRTGRPEGQVLALIGAG
Ga0311349_105439772	3300030294	Fen	MSRWNFVAMGQAGLTGSTRKVAEPIARSIARRTGRPEGQILSL
Ga0311349_119139001	3300030294	Fen	MSKWNFLAMGQAGLTGSTRKVAEPVARSIARRTGRSEGEILSLIGAVFLAIAVVDFLRN
Ga0311355_103367861	3300030580	Palsa	MPELNFAAMGEAGLTGRARDIARPVARLIARRTGRPEADILSLIGAASLTITLINFLRR
Ga0310038_103382181	3300030707	Peatlands Soil	VAKWNFVAMGQAGLTGWTRTAAQPVARLIARRTGRPEADIL
Ga0310038_104412552	3300030707	Peatlands Soil	MPKWNFVAMGQAGLTGWTGKAARPVARAIARKTGRPEAQILSLIGAVF
Ga0265753_10168231	3300030862	Soil	MAKWNLVAMGQVGLTGWTRVAARPVARAVARRTGRPETQILALIGAGFLAIA
Ga0308198_10316461	3300030904	Soil	MSKWNFVAMGQVGLTGWTREIAKPVARSIARRTGRPEAEILSFIGAAFLATTLIDFIRN
Ga0311366_107853231	3300030943	Fen	MSRWNFVAMGQAGLTGSTRKVAEPIARSIARRTGRPEGQILSLIGAVFLAIAVVDFLRNVDSVII
Ga0307498_103552351	3300031170	Soil	MPEWNVVMMGQVGLTRWTGEVAQPVARSIARKTGQPEARR
Ga0307495_101024472	3300031199	Soil	MPNWNFEAMGQVGLTGRTRVALKPLAQAIARRTGRPEAQILSLIGAGFLTISLVDFL
Ga0307497_107099012	3300031226	Soil	MPKWNWVTMGQVGLSGWTKVAAKPLARAVARATGRPEAQILSLIGAGFLAVSLIDFLRQVDA
Ga0170824_1147504371	3300031231	Forest Soil	MPDWNVVTMGRAGLTRWTGEVAQPVARSIARGTGRPEARR
Ga0311364_112936481	3300031521	Fen	MSRWNFVAMGQAGLTGSTRKVAEPIARSIARRTGRPEGQILSLIGAVFLAIA
Ga0310686_1007680551	3300031708	Soil	MAKWNFVAMGQAGLTGWTRTAARPVARLIARSTGRPEADILALIGAGFLAVTLIG
Ga0306917_103773701	3300031719	Soil	MPRLNYVAMGEVGLTGWRKQAVQPAARLIARRTGRPE
Ga0302321_1006032592	3300031726	Fen	MSKWNLVAMGQAGLTGWTQQVAQPVAHSLSRRTGRPEAQILPGESSL
Ga0318498_104461892	3300031778	Soil	MAKWNLVAMGQVGLTGWTGKAARPVARAIARRTGRPEAQILSLI
Ga0311301_108217041	3300032160	Peatlands Soil	MPKWNFVAMGQAGLTGRTRNIARPIARAIARRTGRSEADILSLMGAALLALALVN
Ga0311301_109452871	3300032160	Peatlands Soil	MAKWNLVAMGQAGLTGRTGKAARPLARTIAARTGRPEPQIL
Ga0311301_109986341	3300032160	Peatlands Soil	MPKKNFVAMGQAGLSGRTRAAAQPLARSIARRTGRSEADI
Ga0311301_111932751	3300032160	Peatlands Soil	MAKWNFVAMGQAGLTGWTRTAAQPVARSIARRTGRPEAQILSLIGGV
Ga0311301_125462601	3300032160	Peatlands Soil	MAKWNFVAMGQAGLSGWTRTAAQPVARLIARRTGRPEADILALIGAGFLAITLIDFLRN
Ga0335079_104729012	3300032783	Soil	MTFVARGQVGLTGRARVAAKPLAWAVARRTGRPEAQILSLIGTGFL
Ga0335079_120160651	3300032783	Soil	MTKWNFTAMGQVGLTGQTRRAAQPVARAVARWTGRPEAQILSLIGAGFLAISLIDFLRQV
Ga0335080_106418653	3300032828	Soil	MTKWNYVAMGQAGLTGWTRVAARPVARAVARRTGRPEAQILALVGA
Ga0335080_118534371	3300032828	Soil	MTKWNFVAMGQVGLTGQTRRVAQPVARAVARWTGRPEGQILSLIGAGFL
Ga0335070_110484351	3300032829	Soil	MTKWNFTAMGQVGLTGQARRAAQRVARVVARWTGRPEAQILSLIGAGFLAIAL
Ga0335081_111062281	3300032892	Soil	MPTWNFVAMGQAGLTGWTRVAAQPVARAIARRTGRPEAQILSLIGAG
Ga0335081_112938031	3300032892	Soil	MPKWNWVAMGQVGLSGWTRVAAKPVARAIARSTGRPEAQILSLIGAVFLA
Ga0335081_124790431	3300032892	Soil	MTKWNFTAMGQVGLTGQTRRAAQRVARVAARWTGRPEAQILSLIGAGFLAISLIDFLRQV
Ga0335075_107478102	3300032896	Soil	MAQAGLTGRTRDVARPAARAIARRTGRSEADILSLMGAAVLMMAVINFARLVG
Ga0335076_116877471	3300032955	Soil	MPRWNLEAMGQVGLTGWTRMAAKPLARAVARATGRPEA
Ga0335073_100128989	3300033134	Soil	MPGWNVGTAGRVGLTRWAGEVAEPVARSIARRTGQPEVRR
Ga0335073_106931252	3300033134	Soil	MTKWNYVAMGQAGLTGWTRVAARPVARAVARRTGRPEAQILALIGAAFLAIALVNFLRE

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F072175

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences