Metagenome / Metatranscriptome Family F072076

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

Select file to download:
Download

Overview

Basic Information
Family ID	F072076
Family Type	Metagenome / Metatranscriptome
Number of Sequences	121
Average Sequence Length	74 residues
Representative Sequence	MRPARHFVEWHGQTFLAEPLKTLTKFSSLPPLWAVSRGREFIGTLPVVREETTKEFEARCARWIEELLGRTSG
Number of Associated Samples	95
Number of Associated Scaffolds	121

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	77.69 %
% of genes near scaffold ends (potentially truncated)	22.31 %
% of genes from short scaffolds (< 2000 bps)	91.74 %
Associated GOLD sequencing projects	84
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.63

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign

Most Common Taxonomy
Group	Bacteria (84.298 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (17.355 % of family members)
Environment Ontology (ENVO)	Unclassified (25.620 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (41.322 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Select alignment to view:

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 18.81% β-sheet: 24.75% Coil/Unstructured: 56.44%
Feature Viewer

Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.63
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.63
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 121 Family Scaffolds
PF00583	Acetyltransf_1	14.05
PF00072	Response_reg	9.09
PF01266	DAO	6.61
PF06094	GGACT	4.96
PF00069	Pkinase	1.65
PF09394	Inhibitor_I42	0.83
PF14026	DUF4242	0.83
PF03551	PadR	0.83
PF00415	RCC1	0.83
PF07676	PD40	0.83
PF14534	DUF4440	0.83
PF16864	Dimerisation2	0.83
PF13540	RCC1_2	0.83
PF13581	HATPase_c_2	0.83
PF04879	Molybdop_Fe4S4	0.83
PF02518	HATPase_c	0.83
PF12704	MacB_PCD	0.83

COG ID	Name	Functional Category	% Frequency in 121 Family Scaffolds
COG0515	Serine/threonine protein kinase	Signal transduction mechanisms [T]	6.61
COG5184	Alpha-tubulin suppressor ATS1 and related RCC1 domain-containing proteins	Cell cycle control, cell division, chromosome partitioning [D]	1.65
COG1695	DNA-binding transcriptional regulator, PadR family	Transcription [K]	0.83
COG1733	DNA-binding transcriptional regulator, HxlR family	Transcription [K]	0.83
COG1846	DNA-binding transcriptional regulator, MarR family	Transcription [K]	0.83

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	84.30 %
Unclassified	root	N/A	15.70 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	84.30 %
Unclassified	root	N/A	15.70 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	84.30 %
Unclassified	root	N/A	15.70 %

Name	Rank	Taxonomy	Distribution
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	38.02 %
Unclassified	root	N/A	15.70 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	7.44 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	1.65 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.83 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.83 %

Name	Rank	Taxonomy	Distribution
Gemmatimonadetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	38.02 %
Unclassified	root	N/A	15.70 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	4.13 %
Planctomycetes	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes	1.65 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.83 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	0.83 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	0.83 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.83 %

Name	Rank	Taxonomy	Distribution
Gemmatimonadetes	class	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes	28.93 %
Unclassified	root	N/A	15.70 %
unclassified Gemmatimonadetes	no rank	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes	5.79 %
unclassified Betaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria	4.13 %
Planctomycetia	class	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia	1.65 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.83 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.83 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	0.83 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.83 %

Name	Rank	Taxonomy	Distribution
Gemmatimonadales	order	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales	28.93 %
Unclassified	root	N/A	15.70 %
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	5.79 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	4.13 %
Acetobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	0.83 %
Planctomycetales	order	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales	0.83 %
unclassified Deltaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria	0.83 %
Gemmatales	order	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Gemmatales	0.83 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.83 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.83 %

Name	Rank	Taxonomy	Distribution
unclassified Gemmatimonadales	no rank	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales	27.27 %
Unclassified	root	N/A	15.70 %
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	5.79 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	4.13 %
Deltaproteobacteria bacterium 37-65-8	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium 37-65-8	0.83 %
Planctomycetaceae	family	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae	0.83 %
Gemmataceae	family	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Gemmatales → Gemmataceae	0.83 %
Acetobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	0.83 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.83 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.83 %

Name	Rank	Taxonomy	Distribution
Gemmatimonadales bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	27.27 %
Unclassified	root	N/A	15.70 %
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	5.79 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	4.13 %
unclassified Gemmataceae	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Gemmatales → Gemmataceae → unclassified Gemmataceae	0.83 %
unclassified Planctomycetaceae	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → unclassified Planctomycetaceae	0.83 %
Deltaproteobacteria bacterium 37-65-8	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium 37-65-8	0.83 %
Acetobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	0.83 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.83 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.83 %

Name	Rank	Taxonomy	Distribution
Gemmatimonadales bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	27.27 %
Unclassified	root	N/A	15.70 %
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	5.79 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	4.13 %
Planctomycetaceae bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → unclassified Planctomycetaceae → Planctomycetaceae bacterium	0.83 %
Gemmataceae bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Gemmatales → Gemmataceae → unclassified Gemmataceae → Gemmataceae bacterium	0.83 %
Deltaproteobacteria bacterium 37-65-8	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium 37-65-8	0.83 %
Acetobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	0.83 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.83 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.83 %

Visualization

Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2088090015\|GPICI_8963359	All Organisms → cellular organisms → Bacteria	1710	Open in IMG/M
3300000033\|ICChiseqgaiiDRAFT_c0437263	Not Available	539	Open in IMG/M
3300000363\|ICChiseqgaiiFebDRAFT_10539209	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	590	Open in IMG/M
3300000364\|INPhiseqgaiiFebDRAFT_104926797	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	678	Open in IMG/M
3300000956\|JGI10216J12902_104074221	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	636	Open in IMG/M
3300003267\|soilL1_10134020	Not Available	1549	Open in IMG/M
3300003319\|soilL2_10179578	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	1665	Open in IMG/M
3300003324\|soilH2_10061433	All Organisms → cellular organisms → Bacteria → Proteobacteria	2195	Open in IMG/M
3300003324\|soilH2_10073080	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	1932	Open in IMG/M
3300003987\|Ga0055471_10065084	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	1016	Open in IMG/M
3300003996\|Ga0055467_10020068	All Organisms → cellular organisms → Bacteria	1485	Open in IMG/M
3300003999\|Ga0055469_10004628	All Organisms → cellular organisms → Bacteria	2411	Open in IMG/M
3300003999\|Ga0055469_10202776	All Organisms → cellular organisms → Bacteria	620	Open in IMG/M
3300004114\|Ga0062593_100629221	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium 37-65-8	1030	Open in IMG/M
3300004153\|Ga0063455_100132100	All Organisms → cellular organisms → Bacteria	1106	Open in IMG/M
3300004153\|Ga0063455_101163143	Not Available	575	Open in IMG/M
3300004156\|Ga0062589_102176389	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	567	Open in IMG/M
3300004463\|Ga0063356_101899424	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	898	Open in IMG/M
3300004479\|Ga0062595_100145545	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	1367	Open in IMG/M
3300004479\|Ga0062595_100155522	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	1339	Open in IMG/M
3300004479\|Ga0062595_101468208	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	626	Open in IMG/M
3300004479\|Ga0062595_101957908	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	564	Open in IMG/M
3300004643\|Ga0062591_100220859	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	1414	Open in IMG/M
3300005329\|Ga0070683_102097954	All Organisms → cellular organisms → Bacteria	543	Open in IMG/M
3300005337\|Ga0070682_100583002	All Organisms → cellular organisms → Bacteria	880	Open in IMG/M
3300005339\|Ga0070660_100673446	All Organisms → cellular organisms → Bacteria	867	Open in IMG/M
3300005341\|Ga0070691_10979419	Not Available	526	Open in IMG/M
3300005546\|Ga0070696_100958795	All Organisms → cellular organisms → Bacteria	712	Open in IMG/M
3300005564\|Ga0070664_100312162	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	1423	Open in IMG/M
3300005564\|Ga0070664_100368681	All Organisms → cellular organisms → Bacteria	1309	Open in IMG/M
3300005564\|Ga0070664_100853519	All Organisms → cellular organisms → Bacteria	853	Open in IMG/M
3300005564\|Ga0070664_101937472	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	559	Open in IMG/M
3300005618\|Ga0068864_100084090	All Organisms → cellular organisms → Bacteria	2796	Open in IMG/M
3300005618\|Ga0068864_100126937	All Organisms → cellular organisms → Bacteria	2287	Open in IMG/M
3300005618\|Ga0068864_101198760	All Organisms → cellular organisms → Bacteria	758	Open in IMG/M
3300005718\|Ga0068866_10775279	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	664	Open in IMG/M
3300005840\|Ga0068870_10317064	All Organisms → cellular organisms → Bacteria	989	Open in IMG/M
3300006844\|Ga0075428_100568945	All Organisms → cellular organisms → Bacteria → Proteobacteria	1211	Open in IMG/M
3300006876\|Ga0079217_11130892	Not Available	588	Open in IMG/M
3300006954\|Ga0079219_10047916	All Organisms → cellular organisms → Bacteria	1821	Open in IMG/M
3300007004\|Ga0079218_12739702	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	589	Open in IMG/M
3300009011\|Ga0105251_10392138	Not Available	637	Open in IMG/M
3300009081\|Ga0105098_10185889	Not Available	952	Open in IMG/M
3300009094\|Ga0111539_10214699	All Organisms → cellular organisms → Bacteria	2241	Open in IMG/M
3300009146\|Ga0105091_10093432	Not Available	1372	Open in IMG/M
3300009157\|Ga0105092_10274380	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	949	Open in IMG/M
3300009162\|Ga0075423_12437791	Not Available	570	Open in IMG/M
3300009168\|Ga0105104_10134505	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales	1335	Open in IMG/M
3300009551\|Ga0105238_12657663	All Organisms → cellular organisms → Bacteria	537	Open in IMG/M
3300009553\|Ga0105249_11884861	All Organisms → cellular organisms → Bacteria	670	Open in IMG/M
3300010040\|Ga0126308_10855253	Not Available	632	Open in IMG/M
3300010045\|Ga0126311_11251233	All Organisms → cellular organisms → Bacteria	615	Open in IMG/M
3300010371\|Ga0134125_10602317	All Organisms → cellular organisms → Bacteria	1214	Open in IMG/M
3300010373\|Ga0134128_10628704	All Organisms → cellular organisms → Bacteria	1194	Open in IMG/M
3300010399\|Ga0134127_10154438	All Organisms → cellular organisms → Bacteria	2088	Open in IMG/M
3300010400\|Ga0134122_11003236	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	818	Open in IMG/M
3300012212\|Ga0150985_100577708	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	2224	Open in IMG/M
3300012212\|Ga0150985_114763003	All Organisms → cellular organisms → Bacteria	789	Open in IMG/M
3300012915\|Ga0157302_10109633	All Organisms → cellular organisms → Bacteria	884	Open in IMG/M
3300012943\|Ga0164241_10280170	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	1192	Open in IMG/M
3300012955\|Ga0164298_10063379	All Organisms → cellular organisms → Bacteria	1829	Open in IMG/M
3300012955\|Ga0164298_10629877	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	741	Open in IMG/M
3300012957\|Ga0164303_10078855	All Organisms → cellular organisms → Bacteria	1564	Open in IMG/M
3300012958\|Ga0164299_10569758	Not Available	768	Open in IMG/M
3300012958\|Ga0164299_10999102	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	616	Open in IMG/M
3300012986\|Ga0164304_10037809	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	2531	Open in IMG/M
3300012986\|Ga0164304_10266181	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	1157	Open in IMG/M
3300014301\|Ga0075323_1067262	All Organisms → cellular organisms → Bacteria	725	Open in IMG/M
3300014310\|Ga0075331_1019931	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	1484	Open in IMG/M
3300014325\|Ga0163163_10308990	All Organisms → cellular organisms → Bacteria	1634	Open in IMG/M
3300015077\|Ga0173483_10469756	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	663	Open in IMG/M
3300015371\|Ga0132258_10027539	All Organisms → cellular organisms → Bacteria	12602	Open in IMG/M
3300015371\|Ga0132258_11744978	All Organisms → cellular organisms → Bacteria	1569	Open in IMG/M
3300015371\|Ga0132258_13055073	All Organisms → cellular organisms → Bacteria	1158	Open in IMG/M
3300015372\|Ga0132256_102739663	All Organisms → cellular organisms → Bacteria	592	Open in IMG/M
3300015373\|Ga0132257_102679126	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	649	Open in IMG/M
3300015373\|Ga0132257_104094204	Not Available	530	Open in IMG/M
3300015374\|Ga0132255_100587750	All Organisms → cellular organisms → Bacteria	1645	Open in IMG/M
3300015374\|Ga0132255_103241120	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	694	Open in IMG/M
3300015374\|Ga0132255_104653780	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	581	Open in IMG/M
3300018076\|Ga0184609_10490770	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	560	Open in IMG/M
3300018422\|Ga0190265_10435479	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	1415	Open in IMG/M
3300018422\|Ga0190265_10757439	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	1093	Open in IMG/M
3300018422\|Ga0190265_13744921	Not Available	507	Open in IMG/M
3300018429\|Ga0190272_10983783	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	803	Open in IMG/M
3300018429\|Ga0190272_11105188	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	769	Open in IMG/M
3300018469\|Ga0190270_10977321	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	871	Open in IMG/M
3300018476\|Ga0190274_10865262	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	968	Open in IMG/M
3300018482\|Ga0066669_10335389	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	1247	Open in IMG/M
3300019361\|Ga0173482_10762983	Not Available	508	Open in IMG/M
3300021073\|Ga0210378_10184866	Not Available	799	Open in IMG/M
3300025559\|Ga0210087_1002584	All Organisms → cellular organisms → Bacteria	4228	Open in IMG/M
3300025567\|Ga0210076_1136510	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	533	Open in IMG/M
3300025795\|Ga0210114_1039513	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	981	Open in IMG/M
3300025795\|Ga0210114_1070435	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	714	Open in IMG/M
3300025899\|Ga0207642_10657388	Not Available	657	Open in IMG/M
3300025912\|Ga0207707_10466016	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	1080	Open in IMG/M
3300025932\|Ga0207690_10221485	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	1448	Open in IMG/M
3300025944\|Ga0207661_10632006	Not Available	984	Open in IMG/M
3300025945\|Ga0207679_10149205	All Organisms → cellular organisms → Bacteria	1901	Open in IMG/M
3300025945\|Ga0207679_10338861	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	1307	Open in IMG/M
3300026088\|Ga0207641_10467149	All Organisms → cellular organisms → Bacteria	1221	Open in IMG/M
3300026116\|Ga0207674_11970917	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	549	Open in IMG/M
3300027462\|Ga0210000_1053260	Not Available	651	Open in IMG/M
3300027722\|Ga0209819_10045039	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	1509	Open in IMG/M
3300027743\|Ga0209593_10178706	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	753	Open in IMG/M
3300027775\|Ga0209177_10049339	All Organisms → cellular organisms → Bacteria	1186	Open in IMG/M
3300028381\|Ga0268264_11172486	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	777	Open in IMG/M
3300028587\|Ga0247828_10195680	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → unclassified Planctomycetaceae → Planctomycetaceae bacterium	1050	Open in IMG/M
3300028590\|Ga0247823_10652305	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Gemmatales → Gemmataceae → unclassified Gemmataceae → Gemmataceae bacterium	792	Open in IMG/M
3300028889\|Ga0247827_10064069	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	1729	Open in IMG/M
3300030006\|Ga0299907_10998991	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	615	Open in IMG/M
3300030336\|Ga0247826_10788860	All Organisms → cellular organisms → Bacteria	743	Open in IMG/M
3300031229\|Ga0299913_10398424	All Organisms → cellular organisms → Bacteria	1364	Open in IMG/M
3300031229\|Ga0299913_10529938	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	1163	Open in IMG/M
3300031421\|Ga0308194_10191912	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales	656	Open in IMG/M
3300031854\|Ga0310904_11287203	All Organisms → cellular organisms → Bacteria	529	Open in IMG/M
3300031908\|Ga0310900_10950512	All Organisms → cellular organisms → Bacteria	704	Open in IMG/M
3300032002\|Ga0307416_102740264	Not Available	589	Open in IMG/M
3300032126\|Ga0307415_101799970	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	593	Open in IMG/M
3300033475\|Ga0310811_10338909	All Organisms → cellular organisms → Bacteria	1697	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	67.77%
Host-Associated	Host-Associated	32.23%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	54.55%
Plants	Host-Associated → Plants	32.23%
Aquatic	Environmental → Aquatic	13.22%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	54.55%
Rhizoplane	Host-Associated → Plants → Rhizoplane	17.36%
Rhizosphere	Host-Associated → Plants → Rhizosphere	14.05%
Marine	Environmental → Aquatic → Marine	6.61%
Freshwater	Environmental → Aquatic → Freshwater	5.79%
Sediment	Environmental → Aquatic → Sediment	0.83%
Roots	Host-Associated → Plants → Roots	0.83%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	46.28%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	9.09%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	8.26%
Soil	Host-Associated → Plants → Rhizosphere → Soil	7.44%
Wetlands	Environmental → Aquatic → Marine → Wetlands	6.61%
Loam	Environmental → Terrestrial → Soil → Loam	6.61%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	6.61%
Sediment	Environmental → Aquatic → Freshwater → Sediment	5.79%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	1.65%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.83%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.83%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	22.31%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	12.40%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	9.09%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	8.26%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	7.44%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	6.61%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	6.61%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	5.79%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	4.96%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	4.96%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	4.96%
Uranium Contaminated	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated	1.65%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	1.65%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	1.65%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.83%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	0.83%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	17.36%
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	6.61%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	6.61%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	6.61%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	5.79%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment	4.96%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	4.96%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	4.13%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	4.13%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	3.31%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	3.31%
Sugarcane Root And Bulk Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Sugarcane Root And Bulk Soil	3.31%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	3.31%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	2.48%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	2.48%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	1.65%
Soil	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated → Soil	1.65%
Natural And Restored Wetlands	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Natural And Restored Wetlands	1.65%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	1.65%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	1.65%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	1.65%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	1.65%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	1.65%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	1.65%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	0.83%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.83%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.83%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	0.83%
Switchgrass Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Switchgrass Rhizosphere	0.83%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.83%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.83%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2088090015	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300000033	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300000363	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300000364	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300003267	Sugarcane bulk soil Sample L1	Environmental	Open in IMG/M
3300003319	Sugarcane bulk soil Sample L2	Environmental	Open in IMG/M
3300003324	Sugarcane bulk soil Sample H2	Environmental	Open in IMG/M
3300003987	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_TuleB_D2	Environmental	Open in IMG/M
3300003996	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_CattailB_D2	Environmental	Open in IMG/M
3300003999	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_TuleA_D2	Environmental	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300004153	Grasslands soil microbial communities from Hopland, California, USA (version 2)	Environmental	Open in IMG/M
3300004156	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 1	Environmental	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300004643	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 3	Environmental	Open in IMG/M
3300005329	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG	Environmental	Open in IMG/M
3300005337	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG	Environmental	Open in IMG/M
3300005339	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG	Host-Associated	Open in IMG/M
3300005341	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-1 metaG	Environmental	Open in IMG/M
3300005546	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG	Environmental	Open in IMG/M
3300005564	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG	Host-Associated	Open in IMG/M
3300005618	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2	Host-Associated	Open in IMG/M
3300005718	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2	Host-Associated	Open in IMG/M
3300005840	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2	Host-Associated	Open in IMG/M
3300006844	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2	Host-Associated	Open in IMG/M
3300006876	Agricultural soil microbial communities from Utah to study Nitrogen management - NC AS200	Environmental	Open in IMG/M
3300006954	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control	Environmental	Open in IMG/M
3300007004	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Compost	Environmental	Open in IMG/M
3300009011	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-4 metaG	Host-Associated	Open in IMG/M
3300009081	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 19-21cm May2015	Environmental	Open in IMG/M
3300009094	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)	Host-Associated	Open in IMG/M
3300009146	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 10-12cm March2015	Environmental	Open in IMG/M
3300009157	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 19-21cm March2015	Environmental	Open in IMG/M
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated	Open in IMG/M
3300009168	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (6) Depth 19-21cm September2015	Environmental	Open in IMG/M
3300009551	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG	Host-Associated	Open in IMG/M
3300009553	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG	Host-Associated	Open in IMG/M
3300010040	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot55	Environmental	Open in IMG/M
3300010045	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot61	Environmental	Open in IMG/M
3300010371	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1	Environmental	Open in IMG/M
3300010373	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4	Environmental	Open in IMG/M
3300010399	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3	Environmental	Open in IMG/M
3300010400	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2	Environmental	Open in IMG/M
3300012212	Combined assembly of Hopland grassland soil	Host-Associated	Open in IMG/M
3300012915	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S103-311B-2	Environmental	Open in IMG/M
3300012943	Backyard soil microbial communities from Emeryville, California, USA - Original compost - Back yard soil (BY)	Environmental	Open in IMG/M
3300012955	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_216_MG	Environmental	Open in IMG/M
3300012957	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_207_MG	Environmental	Open in IMG/M
3300012958	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_221_MG	Environmental	Open in IMG/M
3300012986	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_217_MG	Environmental	Open in IMG/M
3300014301	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_TuleA_D1	Environmental	Open in IMG/M
3300014310	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberrySE_TuleA_D1	Environmental	Open in IMG/M
3300014325	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG	Host-Associated	Open in IMG/M
3300015077	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S178-409R-2 (version 2)	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300018076	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_60_coex	Environmental	Open in IMG/M
3300018422	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 124 T	Environmental	Open in IMG/M
3300018429	Populus adjacent soil microbial communities from riparian zone of Shoshone River, Wyoming, USA - 504 T	Environmental	Open in IMG/M
3300018469	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 320 T	Environmental	Open in IMG/M
3300018476	Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 531 T	Environmental	Open in IMG/M
3300018482	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_118	Environmental	Open in IMG/M
3300019361	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S133-311R-2 (version 2)	Environmental	Open in IMG/M
3300021073	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_60_b1 redo	Environmental	Open in IMG/M
3300025559	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_CattailB_D2 (SPAdes)	Environmental	Open in IMG/M
3300025567	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_CattailA_D2 (SPAdes)	Environmental	Open in IMG/M
3300025795	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_TuleA_D2 (SPAdes)	Environmental	Open in IMG/M
3300025899	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025912	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025932	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025944	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes)	Environmental	Open in IMG/M
3300025945	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026088	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026116	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes)	Host-Associated	Open in IMG/M
3300027462	Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant Co PM (SPAdes)	Host-Associated	Open in IMG/M
3300027722	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 19-21cm March2015 (SPAdes)	Environmental	Open in IMG/M
3300027743	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (6) Depth 19-21cm September2015 (SPAdes)	Environmental	Open in IMG/M
3300027775	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control (SPAdes)	Environmental	Open in IMG/M
3300028381	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300028587	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day3	Environmental	Open in IMG/M
3300028590	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_PalmiticAcid_Day30	Environmental	Open in IMG/M
3300028889	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day2	Environmental	Open in IMG/M
3300030006	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT152D67	Environmental	Open in IMG/M
3300030336	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day1	Environmental	Open in IMG/M
3300031229	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT155D38	Environmental	Open in IMG/M
3300031421	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_195 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031854	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D1	Environmental	Open in IMG/M
3300031908	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24D1	Environmental	Open in IMG/M
3300032002	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3	Host-Associated	Open in IMG/M
3300032126	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2	Host-Associated	Open in IMG/M
3300033475	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YC	Environmental	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
GPICI_02677190	2088090015	Soil	MRPARHFVEWHGQTFLAEPLKTLSKFSSLPPLWAVSRGREFIGTLPVVREETTKEFEARCARWIEELLGRTSG
ICChiseqgaiiDRAFT_04372631	3300000033	Soil	MRTSRHLVELDGERYTXEPLKSXHRVTSLPPAWAISRDREFIGKLTIRSDETTKEFEARCIAWLRDLYGLHRPKWDSGS*
ICChiseqgaiiFebDRAFT_105392091	3300000363	Soil	MRQARHFVEWHGQLFLAEPLRTLTRFTSLPPVWAVSRGLEFIGTLPVVEEETTKEFEVRCGRWIDELLGGGSLPQRAPTFGS
INPhiseqgaiiFebDRAFT_1049267972	3300000364	Soil	MRQTRHLVEWHGEQYTAEPLKTLTRVSSLPPVWAVSRRGEFIGTLPERPEETTKEFEVRCAKWLQELLGKARWT*
JGI10216J12902_1040742211	3300000956	Soil	MQSTRHSVEWKGIPYTADRLKTWTRLSSLPPLWAISRRGEFIGTLPYEAEETTKEFELRCANWLADLFGQ*
soilL1_101340204	3300003267	Sugarcane Root And Bulk Soil	MRQSRHFVEWHGQLFLAEPLQTLTRFSSLPPLWAVSRGREFIGTLPVVEAETTKEFEIRCARWIDELLGAGGGQTWS*
soilL2_101795781	3300003319	Sugarcane Root And Bulk Soil	MRQSRHFVEWHGQLFLAEPLQTLTRFSSLPPLWAVSRGREFIGTLPVVEAETTKEFEIRCARWIDELLG
soilH2_100614334	3300003324	Sugarcane Root And Bulk Soil	MRQSRHFVEWHGQLFLAEPLRTLTRFSSLPPVWAVSRGREFIGTLPVVEEETTKEFEVRCARWIDELLGGGGGPTWS*
soilH2_100730804	3300003324	Sugarcane Root And Bulk Soil	MRNTRYHVEWHGVLYTADRLRTMTRVSSLPPLWAVSRGGEFIGTLPYREQETTKEFEVRCAKWLADLLGG*
Ga0055471_100650841	3300003987	Natural And Restored Wetlands	MRFDRHVVEWHGEYYTIEPLKTLPRVTTLSPIWAVSRRGEFIGTLPYRQDETTKEFEVRCLSWVRDLLGTPSSQSRH*
Ga0055467_100200682	3300003996	Natural And Restored Wetlands	MRPARHFVEWHGQTFLAEPLKTLSKFSSLPPLWAVSRGREFIGTLPVVREETTKEFEARCARWIEELLGRTSG*
Ga0055469_100046283	3300003999	Natural And Restored Wetlands	MRFDRHVVEWHGEDYTIEPLKTLPRVTTLSPIWAVSRRGEFIGTLPYRQDETTKEFEVRCLSWVRDLLGTPSSQSRH*
Ga0055469_102027762	3300003999	Natural And Restored Wetlands	MRPARHFVEWHGQTFLAEPLKTLAKFSSLPPLWAVSRGREFIGTLPVVREETTKEFEARCARWIEELLGRTSG*
Ga0062593_1006292212	3300004114	Soil	MRFDRHVVEWHGEYYTIEPLKTLPRVTSLSPIWTVSRHGEFIGTLPYHQDETTKEFEVRCLSWVRDLLGTPLSQSRH*
Ga0063455_1001321002	3300004153	Soil	FLAEPLKTLTKFSSLPPLWAVSRGREFIGTLPVVTEETTKEFEVRCARWIEELLGRASG*
Ga0063455_1011631431	3300004153	Soil	MRTIRHFVEWHGQRFTAEPLRTLTKFSSLPPLWAVSRGREFIGTLPVVEKETTKEFEVRCSRWIEDLLGRVRR*
Ga0062589_1021763891	3300004156	Soil	MRTIRHFVEWHGQTFTAEPLKTLTKFSSLPPLWAVSRGREFIGTLPVVTEETTKEFEARCARWIDDLLGRTGG*
Ga0063356_1018994242	3300004463	Arabidopsis Thaliana Rhizosphere	MRRTRHLVEWHGELYTAEPLKTLTRVSSLPPVWAVSRRGEFIGTLPERPEETTKEFEVRCARWLHELLGGAFR*
Ga0062595_1001455451	3300004479	Soil	MRQTRHLVEWHGQLYTAEPLKTLTRVSSLPPVWAVSRRGEFIGTLPDRPEETTKEFEVRCARWLQELLGGAVR*
Ga0062595_1001555223	3300004479	Soil	MRRTRHLVEWHGELYTAEPLKTLTRVSSLPPVWAISRRGEFIGTLPERPDETTKEFEVRCAKWLQELIGGASRRT*
Ga0062595_1014682082	3300004479	Soil	MRTIRHFVEWHGQTFTAEPLKTLTKFSSLPPLWAVSRGREFIGTLPVVTEETTKEFEARCARWIDDLLGRTSG*
Ga0062595_1019579081	3300004479	Soil	MRQTRHLVEWHGELYTAEPLKTLTRVSSLPPVWAVSRRGEFIGTLPDRPEETTKEFEVRCARWLQELLGGAFR*
Ga0062591_1002208593	3300004643	Soil	MRQTRHLVEWHGELYTAEPLKTLTRVSSLPPVWAVSRRGEFIGTLPDRPEETTKEFEVRCARWLQELLGGAVR*
Ga0070683_1020979541	3300005329	Corn Rhizosphere	MLPARHFVEWHGQTFLAEPLKTLTKFSSLPPLWAVSRGREFIGTLPVVTEETTKEFETRCARWIEELLGRAGG*
Ga0070682_1005830021	3300005337	Corn Rhizosphere	MLPARHFVEWHGQTFLAEPLKTLTKFSSLPPLWAVSRGREFIGTLPVVREETTKEFEARCARWIEELLGRTSG*
Ga0070660_1006734463	3300005339	Corn Rhizosphere	TFTAEPLKTLTKFSSLPPLWAVSRGREFIGTLPVVTEETTKEFEARCARWIDDLLGRTSG
Ga0070691_109794192	3300005341	Corn, Switchgrass And Miscanthus Rhizosphere	HGQTFLAEPLKTLSKFSSLPPLWAVSRGREFIGTLPVVSEETTKEFEARCARWIEELLGRTSG*
Ga0070696_1009587952	3300005546	Corn, Switchgrass And Miscanthus Rhizosphere	MRPARHFVEWHGQTFLAEPLKTLTKFSSLPPLWAVSRGREFIGTLPVVREETTKEFEARCARWIEELLGRTSG*
Ga0070664_1003121622	3300005564	Corn Rhizosphere	MRQTRHLVEWHGELYTAEPLKTLTRVSSLPPVWAVSRRGEFIGTLPNRPEETTKEFEVRCARWLQELIGGAFR*
Ga0070664_1003686812	3300005564	Corn Rhizosphere	MRTNRHFVEWHGQLFTAEPLKTLTKFSSLPPLWAVSRGREFIGTLPVVTEETTKEFETRCARWIEELLGRAGG*
Ga0070664_1008535192	3300005564	Corn Rhizosphere	MRPARHFVEWHGQTFLAEPLKTLSKFSSLPPLWAVSRGREFIGTLPVVSEETTKEFEARCARWIEELLGRTSG*
Ga0070664_1019374721	3300005564	Corn Rhizosphere	MPHRSEAPMRPARHFVEWHGQTFTAEPLKTLTKFSSLPPLWAVSRGREFIGTLPVVTEETTKEFEARCARWIDDLLGRTSG*
Ga0068864_1000840903	3300005618	Switchgrass Rhizosphere	MQPTRHLLEWHGERYTAEPLRTLTRVSSLPPVWAVSRRGEFIGTLPERPEETTKEFEVRCVRWLQELLGGASR*
Ga0068864_1001269373	3300005618	Switchgrass Rhizosphere	MRRTRHCVEWHGELYTAEPLKTLTRVSSLPPVWALSRRGEFIGTLPECPEETTKEFEVRCARWLQELLGSGPGFRPASGEPAL*
Ga0068864_1011987601	3300005618	Switchgrass Rhizosphere	TRPPFALVLEVAMRPARHFVEWHGQTFLAEPLKTLSKFSSLPPLWAVSRGREFIGTLPVVREETTKEFEARCARWIEELLGRTSG*
Ga0068866_107752791	3300005718	Miscanthus Rhizosphere	DRFACPFEVVMLPARHFVEWHGQTFLAEPLKTLTKFSSLPPLWAVSRGREFIGTLPVVTEETTKEFETRCARWIEELLGRAGG*
Ga0068870_103170642	3300005840	Miscanthus Rhizosphere	MRPARHFVEWHGQTFLAEPLKTLSKFSSLPPLWAVSRGREFIGTLPVVREETTKEFEARC
Ga0075428_1005689452	3300006844	Populus Rhizosphere	MRPARHFVEWHGQTFLAEPLKTLSKFSSLPPLWAVSRGREFIGTLPVVGEETTKEFEARCARWIEELLGRTSG*
Ga0079217_111308922	3300006876	Agricultural Soil	MRSARYLVEWHGERFTAEPLKSAYRFTSLPPVWAVRRGGEFIGTLPYRAEETTTEFETRCIAWLRDLYESRRV*
Ga0079219_100479163	3300006954	Agricultural Soil	MHRTRHLVEWHGERYTAEPLKTVTRVSSLPPVWAVSRRGEFIGTLPEPPEETTKEFEVRYAKWLQELHGGASR*
Ga0079218_127397022	3300007004	Agricultural Soil	GEYYTIEPLKTLPRVTSLSPIWAVSRRGEFIGTLPYHQDETTKEFEVRCLSWVCDLLGTPLSQSRH*
Ga0105251_103921382	3300009011	Switchgrass Rhizosphere	MRTNRHFVEWHGQLFTAEPLKTLTKFSSLPPLWAVSRGREFIGTLPVVNEETTKEFEVRCAQWIDELLGRARG*
Ga0105098_101858891	3300009081	Freshwater Sediment	MRSSRHLVELDGERYTAEPLKSSHRLTSLPPAWAVSRGREFIGTLPIRSDETTKEFEARCIAWLRDLYGLHRP*
Ga0111539_102146993	3300009094	Populus Rhizosphere	MRPARHFVEWHGQTFLAEPLKTLTKFSSLPPLWAVSRGREFIGTLPVVREETTKEFEARCSRWIEELLGRTSG*
Ga0105091_100934324	3300009146	Freshwater Sediment	MRSSRHLVELDGERYTAEPLKSSHRLTSLPPAWAVSRGREFIGTLPIRSDETTKEFEARCIAWLRDLYGLH*
Ga0105092_102743801	3300009157	Freshwater Sediment	ARHIVEWHGEYYTVETLKSLPRVTSQSPIWAVSRRGEFIGTLAYRQDETTKEFEVRCLSWLQDLLEAVPPWPRR*
Ga0075423_124377911	3300009162	Populus Rhizosphere	MRTIRHFVEWHGQLFTAEPLKTLTKFSSLPPLWAGSRGREFIGTLPVVTEETTKEFEVRCARWIEELLGRASG*
Ga0105104_101345053	3300009168	Freshwater Sediment	MRSTRHIVEWHGERFSLEPLKSLSQVTALLSPDWAVSRRGEFIGTLPYRSDETTKEFEGRCTDWLRDLLETPEPGSPPKARGHLAY*
Ga0105238_126576632	3300009551	Corn Rhizosphere	MQTARHFVEWHGQTFLAEPLKTLTKFSSLPPLWAVSRGREFIGTLPVVKEETTKEFEVRCARWIEELLGRASD*
Ga0105249_118848612	3300009553	Switchgrass Rhizosphere	MLPARHFVEWHGQTFLAEPLKTLSKFSSLPPLWAVSRGREFIGTLPVVSEETTKEFEARCARWIEELLGRTSG*
Ga0126308_108552531	3300010040	Serpentine Soil	MRRTRYSVEWHGVRYTAEPLKTVTGVSSLPPLWAVSRGREFIGTLPMRPEETTKEFEVRCATWLQDLLGPSKAASWKHSSEQPSR*
Ga0126311_112512331	3300010045	Serpentine Soil	MHTARHFVEWHGQTFLAEPLKTLTKFSSLPPLWAVSRGREFIGTLPVVTEETTKEFEVRCARWIEELLGRASG*
Ga0134125_106023173	3300010371	Terrestrial Soil	VEWHGQTFLAEPLKTLTKFSSLPPLWAVSRGREFIGTLPVVREETTKEFEARCARWIEELLGRTSG*
Ga0134128_106287041	3300010373	Terrestrial Soil	MRQTRHLVAWHGQLYTAEPLKTLTRVSSLPPVWAVSRRGEFIGTLPDRPEETTKEFEVRCARWLQELLGGAFP*
Ga0134127_101544383	3300010399	Terrestrial Soil	MLPARHFVEWHGQTFLAEPLKTLSKFSSLPPLWAVSRGREFIGTLPVVSEETTKEFEARCARWIEELLGRAGG*
Ga0134122_110032362	3300010400	Terrestrial Soil	MRQTRHLVEWHGELYTAEPLKTLTRVSSLPPVWAVSRRGEFIGTLPDRPEETTKEFEVRC
Ga0150985_1005777083	3300012212	Avena Fatua Rhizosphere	MRTIRHFVEWHGQRFMAEPLRTLTKFSSLPPLWAVSRGREFIGTLPVVEKETTKEFEVRCSRWIEDLLGRVRG*
Ga0150985_1147630031	3300012212	Avena Fatua Rhizosphere	SAFEVLMHSARHFVEWHGQLFMAESVKTLTKFSSLPPVWAVSRGREFIGTLPVVNEETTKEFEVRCAGWIEELLGRTSG*
Ga0157302_101096332	3300012915	Soil	MLPARHFVEWHGQTFLAEPLKTLSKFSSLPPLWAVSRGREFIGTLPVVREETTKEFEARCARWIEELLGRTSG*
Ga0164241_102801703	3300012943	Soil	MRPARHFVEWHGQTFLAEPLKTLAKFSSLPPLWAVSRGREFIGTLPVVREETTKEFETRCARWIEELLGRTSG*
Ga0164298_100633791	3300012955	Soil	HGERYPAEPLKTRTRVSSLPPVWAVSRRGEFIGPLPDHPEETTQEFEVRCAKWLQELLGRAAP*
Ga0164298_106298772	3300012955	Soil	MRQTRHLLEWHGELYTAEPLKTLTRVSSLPPVWALSRRGEFIGTLPDRPEETTKEFEVRCARWLQELLGGAFR*
Ga0164303_100788551	3300012957	Soil	MRPTRHCVEWHGELYTAEPLKTLTRVSSLPPVWAVSRRGEFIGTLPDRPEETTKEFEVRCAKWLQGLLGKSFPWT*
Ga0164299_105697581	3300012958	Soil	VEWHGQTFTAEPLKTLTKFSSLPPLWAVSRGREFIGTLPVVNEETTKEFEVRCAQWIDELLGRARG*
Ga0164299_109991021	3300012958	Soil	MRPTRHCVEWHGELYTAEPLKTLTRVSSLPPVWAVSRRGEFIGTLPDRPEETTKEFEVRCAKWLQDLVGEAFRWK*
Ga0164304_100378093	3300012986	Soil	MRRTPHLVEWHGERYTAEPLKTLTRVSSLPPVWAVSRRGEFIGTLPDHPEETTQEFEVRCAKWLQELLGRAAP*
Ga0164304_102661811	3300012986	Soil	MRPTRHCVEWHGELYTAEPLKTLTRVSSLPPVWAVSRRGEFIGTLPDRPEETTKEFEVRCARWLQELIGGAFR*
Ga0075323_10672621	3300014301	Natural And Restored Wetlands	MRPARHFVEWHGQTFLAEPLKTLSKFSSLPPLWAVSRGREFIGTLPVVREETTKEFEARCARWIEELLG
Ga0075331_10199313	3300014310	Natural And Restored Wetlands	MRFDRHVVEWHGEYYTIEPLRTLPRVTTLSPIWAVSRRGEFIGTLPYRQDETTKEFEVRCLSWVRDLLGTPSSQSRH*
Ga0163163_103089901	3300014325	Switchgrass Rhizosphere	RSLLLEASMRRTRHLVEWHGELYTAEPLKTLTRVSSLPPVWAISRRGEFIGTLPERPEETTKEFEVRCVRWLQELLGGASR*
Ga0173483_104697561	3300015077	Soil	PVLTIPGRRPKSTRPPFALALEVAMLPARHFVEWHGQTFLAEPLKTLSKFSSLPPLWAVSRGREFIGTLPVVSEETTKEFEARCARWIEELLGRTSG*
Ga0132258_100275394	3300015371	Arabidopsis Rhizosphere	MRTIRHFVEWHGQTFTAEPLKTLTKFSSLPPLWAVSRGREFIGTLPVVTEETTKEFEARCALWIDDLLGRTGG*
Ga0132258_117449782	3300015371	Arabidopsis Rhizosphere	MPKSRRFVEWQGVRYTAEPLRTLTRVSSLPPVWAVSRNSEFIGTLPVEPGETTSEFEVRCTEWLKDLFGSAPGSVRSANTSP*
Ga0132258_130550732	3300015371	Arabidopsis Rhizosphere	MQSTRHSVEWKGTPYTADRLKTWTRLSSLPPLWAISRRGEFIGTLPYDAEETTKEFELRCANWLADLFGQ*
Ga0132256_1027396631	3300015372	Arabidopsis Rhizosphere	MRPARHFVEWHGQTFLAEPLKTLTKFSSLPPLWAVSRGREFIGTLPVVREETTKEFEARCARW
Ga0132257_1026791261	3300015373	Arabidopsis Rhizosphere	MRQTRHLVEWHGELYTAEPLKTLTRVSSLPPAWAVSRRGEFIGTLPDHPEETTKEFEVRCARWLQELLGGAFHW
Ga0132257_1040942042	3300015373	Arabidopsis Rhizosphere	MRTIRHFVEWHGQTFTAEPLKTLTKFSSLPPLWAVSRGREFIGTLPVVTEETTKEFEARCARWIDD
Ga0132255_1005877503	3300015374	Arabidopsis Rhizosphere	MRTIRHFVEWHGQTFTAEPLKTLTKFSSLPPLWAVSRGREFIGTLPVVTEETTKEFEARCALWIDDLLGRTSG*
Ga0132255_1032411202	3300015374	Arabidopsis Rhizosphere	VEWKGTPYTADRLKTWTRLSSLPPLWAISRRGEFIGTLPYDAEETTKEFELRCANWLADLFGQ*
Ga0132255_1046537801	3300015374	Arabidopsis Rhizosphere	MPKSRRFVEWQGVRYTAEPLRTLTRVSSLPPVWAVSRNSEFIGTLPVEPGETTSEFEVRCTEWLKDLYGSASPGPRDRNRTP*
Ga0184609_104907701	3300018076	Groundwater Sediment	MRSGRHLVEWQGERYTAEPLESMYRVTSLPPVWTVSHGGEFIGTLPCRPEETTKEFEIRCIAWLRDLYGSRRG
Ga0190265_104354791	3300018422	Soil	MRSGRHFVEWQGERYTAEPLKSLYRATSLPPVWAVSRGSEFIGTLPSRPEETTKEFEIRCLAWLRDLYGSRRT
Ga0190265_107574392	3300018422	Soil	MRSARHCVEWHGERYAVEPLKSSSRATSLPPVWAVLRGREFIGTLPCRPEETTKEFEVRCLAWLRDLYERRA
Ga0190265_137449211	3300018422	Soil	MHSGSRFVEWQGRRYTAEPLDSPYCVTTLPPVWALSRGGEFIGTMPCRPRETTKEFEVRCLDWLRDLYGSRRA
Ga0190272_109837832	3300018429	Soil	MHSGSRFVEWQGRRYTAEPLDSPYRVTTLPPVWALSRGGEFIGTMPCRPRESTKEFQIRYLSWLRDLYGSRRA
Ga0190272_111051881	3300018429	Soil	MRSARHCVEWHGERYTAEPLKSVYRFTSLPPVWAVRHGREFIGTLPYRAEETTEEFEVRCIAWLRDLYERRA
Ga0190270_109773211	3300018469	Soil	MRFDRHVVEWHGEYYTIEPLKTLPRVTSLSPIWAVSRRGEFIGTLPYHQDETTKEFEVRCLSWVRDLLGTPLSQSRH
Ga0190274_108652621	3300018476	Soil	FDRHVVEWHGEYYTIEPLKTLPRVTSLSPIWAVYRRGEFIGTLPYHQDETTKEFEVRCLSWVCDLLGTPLSQSRH
Ga0066669_103353893	3300018482	Grasslands Soil	MRQTRHLVEWHGELYTAEPLKTLTRVSSLPPVWAVSRRGEFIGILPDRPEETTKEFEVRCARWLQELLGGGFH
Ga0173482_107629831	3300019361	Soil	MRTIRHFVEWHGQTFTAEPLKTLTKFSSLPPLWAVSRGREFIGTLPVVTEETTKEFEARCARWIDDLLGRTSG
Ga0210378_101848661	3300021073	Groundwater Sediment	LVEWQGERYTAEPLESMYRVTSLPPVWTVSHGGEFIGTLPCRPEETTKEFEIRCIAWLRDLYGSRRG
Ga0210087_10025843	3300025559	Natural And Restored Wetlands	MRFDRHVVEWHGEYYTIEPLKTLPRVTTLSPIWAVSRRGEFIGTLPYRQDETTKEFEVRCLSWVRDLLGTPSSQSRH
Ga0210076_11365102	3300025567	Natural And Restored Wetlands	MRFDRHVVEWHGEYYTIEPLKTLPRVTTLSPIWAVSRRGEFIGTLPYRQDETTKEFEVRCLSWVR
Ga0210114_10395132	3300025795	Natural And Restored Wetlands	YYTIEPLKTLPRVTTLSPIWAVSRRGEFIGTLPYRQDETTKEFEVRCLSWVRDLLGTPSSQSRH
Ga0210114_10704352	3300025795	Natural And Restored Wetlands	MRPARHFVEWHGQTFLAEPLKTLAKFSSLPPLWAVSRGREFIGTLPVVREETTKEFEARCARWIEELLGRTSG
Ga0207642_106573881	3300025899	Miscanthus Rhizosphere	MLPARHFVEWHGQTFLAEPLKTLTKFSSLPPLWAVSRGREFIGTLPVVTEETTKEFETRCARWIEELLGRAGG
Ga0207707_104660161	3300025912	Corn Rhizosphere	MLPARHFVEWHGQTFLAEPLKTLSKFSSLPPLWAVSRGREFIGTLPVVSEETTKEFEARCARWIEELLGRTSG
Ga0207690_102214852	3300025932	Corn Rhizosphere	MLPARHFVEWHGQTFLAEPLKTLSKFSSLPPLWAVSRGREFIGTLPVVREETTKEFEARCARWIEELLGRTSG
Ga0207661_106320061	3300025944	Corn Rhizosphere	MRTNRHFVEWHGQLFTAEPLKTLTKFSSLPPLWAVSRGREFIGTLPVVNEETTKEFEVRCGQWIDELLGRARG
Ga0207679_101492052	3300025945	Corn Rhizosphere	MRPARHFVEWHGQTFLAEPLKTLSKFSSLPPLWAVSRGREFIGTLPVVSEETTKEFEARCARWIEELLGRTSG
Ga0207679_103388612	3300025945	Corn Rhizosphere	MRQTRHLVEWHGELYTAEPLKTLTRVSSLPPVWAVSRRGEFIGTLPNRPEETTKEFEVRCARWLQELIGGAFR
Ga0207641_104671492	3300026088	Switchgrass Rhizosphere	MQPTRHLLEWHGERYTAEPLRTLTRVSSLPPVWAVSRRGEFIGTLPERPEETTKEFEVRCVRWLQELLGGASR
Ga0207674_119709171	3300026116	Corn Rhizosphere	RPPFALALEVAMLPARHFVEWHGQTFLAEPLKTLSKFSSLPPLWAVSRGREFIGTLPVVSEETTKEFEARCARWIEELLGRTSG
Ga0210000_10532601	3300027462	Arabidopsis Thaliana Rhizosphere	LTIPGRHPKSTRPPFALVLEVAMRPARHFVEWHGQTFLAEPLKTLSKFSSLPPLWAVSRGREFIGTLPVVREETTKEFEARCARWIEELLGRTSG
Ga0209819_100450391	3300027722	Freshwater Sediment	VELDGERYTAEPLKSSHRLTSLPPAWAVSRGREFIGTLPIRSDETTKEFEARCIAWLRDLYGLHRP
Ga0209593_101787062	3300027743	Freshwater Sediment	MRSTRHIVEWHGERFSLEPLKSLSQVTALLSPDWAVSRRGEFIGTLPYRSDETTKEFEGRCTDWLRDLLETPEPGSPPKARGHLAY
Ga0209177_100493392	3300027775	Agricultural Soil	MHRTRHLVEWHGERYTAEPLKTVTRVSSLPPVWAVSRRGEFIGTLPEPPEETTKEFEVRYAKWLQELHGGASR
Ga0268264_111724861	3300028381	Switchgrass Rhizosphere	MRQTRHLVEWHGELYTAEPLKTLTRVSSLPPVWAVSRRGEFIGTLPDRPEETTKEFEVRCARWLQELLGGAVR
Ga0247828_101956802	3300028587	Soil	MRFDRHVVEWHGEYYTIEPLKTLPRVTSLSPIWTVSRHGEFIGTLPYHQDETTKEFEVRCLSWVRDLLGTPLSQSRH
Ga0247823_106523051	3300028590	Soil	MRFDRHVVEWHGEYYTIEPLKTLPRVTSLSPIWAVSRRGEFIGTLPYRQDETTKEFEVRCLSWVRDLFGGPITPPSPLQPCNRLS
Ga0247827_100640693	3300028889	Soil	MRFDRHVVEWHGEYYTIEPLKTLPRVTSLSPIWTVSRRGEFIGTLPYHQDETTKEFEVRCLSWVRDLLGTPLSQSRH
Ga0299907_109989911	3300030006	Soil	MRLARHYVESHGERYTLELLKSLSPVTSSPPVWAVSRRGEFIGTLPCHPEETTKEFEIRCIAWLSDLYHGSTRA
Ga0247826_107888602	3300030336	Soil	MRPARHFVEWHGQTFLAEPLKTLTKFSSLPPLWAVSRGREFIGTLPVVREETTKEFEARCSRWIEELLGRTSG
Ga0299913_103984241	3300031229	Soil	MRSGRHLVEWQGERYTVEPLRSQRATSLPPVWAVSRKGEFIGTLPSRSEESTKEFEVRCVAWLRDLYRSARM
Ga0299913_105299384	3300031229	Soil	MRSARHCVEWHGERYTVEPLKSSSRATSLPPVWAVFRGREFIGTLPCRPEETTKEFEVRCIAWLRDLYERRA
Ga0308194_101919121	3300031421	Soil	MRQARHFVEWHGQLFLAEPLRTLTRFSSLPPVWAVSRGLEFIGTLPVVEEETTKEFEVRCGRWIDELLGGGALSQGGPTSGSPPSARGTR
Ga0310904_112872032	3300031854	Soil	MLPARHFVEWHGQTFLAEPLKTLTKFSSLPPLWAVSRGREFIGTLPVVTEETTKEFEARCARWIDDLLGRTSG
Ga0310900_109505122	3300031908	Soil	MLPARHFVEWHGQTFLAEPLKTLSKFSSLPPLWAVSRGREFIGTLPVVSEETTKEFEARCARWIDDLLGRTSG
Ga0307416_1027402641	3300032002	Rhizosphere	MQTIRHFVEWHGQLFTAEPLKTLTKFSSLPPLWAVSRGREFIGTLPVVDTETTKEFEVRCARWIEELLGRAKG
Ga0307415_1017999702	3300032126	Rhizosphere	MRPARHFVEWHGQTYLAEPLKTLSKFSSLPPLWAVSRGREFIGTLPVVREETTKEFEARCARWIEELLGRTSG
Ga0310811_103389092	3300033475	Soil	MRPARHFVEWHGQTFLAEPLKTLSKFSSLPPLWAVSRGREFIGTLPVVTEETTKEFEARCARWIEELLGRTSG

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F072076

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences