Metagenome Family F072075

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F072075
Family Type	Metagenome
Number of Sequences	121
Average Sequence Length	121 residues
Representative Sequence	MPDRLPSLVLLVGFWIPPAVVGRAAADLVHRSPTRVRPALVYTVLAILTLGWSAAWFLFNLSRMPPYVPGATQDPTYAPPEAVAGLAVVASALVLPGSAIACLLAFRSRGRSLRRTSGARVSA
Number of Associated Samples	84
Number of Associated Scaffolds	121

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	61.16 %
% of genes near scaffold ends (potentially truncated)	36.36 %
% of genes from short scaffolds (< 2000 bps)	85.12 %
Associated GOLD sequencing projects	76
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.56

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (100.000 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere (30.578 % of family members)
Environment Ontology (ENVO)	Unclassified (34.711 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (59.504 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 62.25% β-sheet: 0.00% Coil/Unstructured: 37.75%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.56
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.56
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 121 Family Scaffolds
PF00144	Beta-lactamase	7.44
PF14066	DUF4256	2.48
PF13646	HEAT_2	2.48
PF00903	Glyoxalase	1.65
PF12098	DUF3574	1.65
PF14534	DUF4440	1.65
PF12681	Glyoxalase_2	1.65
PF06441	EHN	0.83
PF11752	DUF3309	0.83
PF13432	TPR_16	0.83
PF01979	Amidohydro_1	0.83
PF13687	DUF4153	0.83
PF00583	Acetyltransf_1	0.83
PF13602	ADH_zinc_N_2	0.83
PF12796	Ank_2	0.83
PF04229	GrpB	0.83
PF01494	FAD_binding_3	0.83
PF02698	DUF218	0.83
PF08818	DUF1801	0.83
PF05163	DinB	0.83
PF08695	Coa1	0.83
PF00005	ABC_tran	0.83
PF08713	DNA_alkylation	0.83
PF10503	Esterase_PHB	0.83
PF04216	FdhE	0.83
PF01965	DJ-1_PfpI	0.83
PF00069	Pkinase	0.83
PF12704	MacB_PCD	0.83
PF07244	POTRA	0.83
PF12697	Abhydrolase_6	0.83
PF02597	ThiS	0.83
PF12867	DinB_2	0.83
PF06439	3keto-disac_hyd	0.83
PF00561	Abhydrolase_1	0.83

COG ID	Name	Functional Category	% Frequency in 121 Family Scaffolds
COG1680	CubicO group peptidase, beta-lactamase class C family	Defense mechanisms [V]	7.44
COG1686	D-alanyl-D-alanine carboxypeptidase	Cell wall/membrane/envelope biogenesis [M]	7.44
COG2367	Beta-lactamase class A	Defense mechanisms [V]	7.44
COG0515	Serine/threonine protein kinase	Signal transduction mechanisms [T]	3.31
COG0654	2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases	Energy production and conversion [C]	1.65
COG0578	Glycerol-3-phosphate dehydrogenase	Energy production and conversion [C]	0.83
COG0596	2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase MenH and related esterases, alpha/beta hydrolase fold	Coenzyme transport and metabolism [H]	0.83
COG0644	Dehydrogenase (flavoprotein)	Energy production and conversion [C]	0.83
COG0665	Glycine/D-amino acid oxidase (deaminating)	Amino acid transport and metabolism [E]	0.83
COG1434	Lipid carrier protein ElyC involved in cell wall biogenesis, DUF218 family	Cell wall/membrane/envelope biogenesis [M]	0.83
COG1977	Molybdopterin synthase sulfur carrier subunit MoaD	Coenzyme transport and metabolism [H]	0.83
COG2104	Sulfur carrier protein ThiS (thiamine biosynthesis)	Coenzyme transport and metabolism [H]	0.83
COG2318	Bacillithiol/mycothiol S-transferase BstA/DinB, DinB/YfiT family (unrelated to E. coli DinB)	Secondary metabolites biosynthesis, transport and catabolism [Q]	0.83
COG2320	GrpB domain, predicted nucleotidyltransferase, UPF0157 family	General function prediction only [R]	0.83
COG2949	Uncharacterized periplasmic protein SanA, affects membrane permeability for vancomycin	Cell wall/membrane/envelope biogenesis [M]	0.83
COG3058	Formate dehydrogenase maturation protein FdhE	Posttranslational modification, protein turnover, chaperones [O]	0.83
COG4430	Uncharacterized conserved protein YdeI, YjbR/CyaY-like superfamily, DUF1801 family	Function unknown [S]	0.83
COG4912	3-methyladenine DNA glycosylase AlkD	Replication, recombination and repair [L]	0.83
COG5646	Iron-binding protein Fra/YdhG, frataxin family (Fe-S cluster biosynthesis)	Posttranslational modification, protein turnover, chaperones [O]	0.83
COG5649	Uncharacterized conserved protein, DUF1801 domain	Function unknown [S]	0.83

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	100.00 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	100.00 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	100.00 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
unclassified Bacteria	no rank	All Organisms → cellular organisms → Bacteria → unclassified Bacteria	71.90 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	1.65 %
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	1.65 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1.65 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.83 %
environmental samples	no rank	All Organisms → cellular organisms → Bacteria → environmental samples	0.83 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
bacterium	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	71.90 %
Gemmatimonadetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	1.65 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	1.65 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.83 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.83 %
Firmicutes	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	0.83 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	0.83 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
bacterium	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	71.90 %
Gemmatimonadetes	class	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes	1.65 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	1.65 %
Pseudomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales	0.83 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.83 %
Firmicutes	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	0.83 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	0.83 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
bacterium	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	71.90 %
Gemmatimonadales	order	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales	1.65 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	1.65 %
Pseudomonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae	0.83 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.83 %
Firmicutes	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	0.83 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	0.83 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
bacterium	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	71.90 %
Gemmatimonadaceae	family	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae	1.65 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	1.65 %
Pseudomonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas	0.83 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.83 %
Firmicutes	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	0.83 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	0.83 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
bacterium	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	71.90 %
Gemmatirosa	genus	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatirosa	1.65 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	1.65 %
Pseudomonas stutzeri group	species group	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas → Pseudomonas stutzeri group	0.83 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.83 %
Firmicutes	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	0.83 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	0.83 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
bacterium	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	71.90 %
Gemmatirosa kalamazoonesis	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatirosa → Gemmatirosa kalamazoonesis	1.65 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	1.65 %
Pseudomonas stutzeri subgroup	species subgroup	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas → Pseudomonas stutzeri group → Pseudomonas stutzeri subgroup	0.83 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.83 %
Firmicutes	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	0.83 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	0.83 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
bacterium	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	71.90 %
Gemmatirosa kalamazoonesis	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatirosa → Gemmatirosa kalamazoonesis	1.65 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	1.65 %
Pseudomonas stutzeri	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas → Pseudomonas stutzeri group → Pseudomonas stutzeri subgroup → Pseudomonas stutzeri	0.83 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.83 %
Firmicutes	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	0.83 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	0.83 %
Unclassified	root	N/A	0.00 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000033\|ICChiseqgaiiDRAFT_c0582993	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	975	Open in IMG/M
3300000033\|ICChiseqgaiiDRAFT_c0763638	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	869	Open in IMG/M
3300000033\|ICChiseqgaiiDRAFT_c0765398	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	2696	Open in IMG/M
3300000364\|INPhiseqgaiiFebDRAFT_105868547	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	2622	Open in IMG/M
3300000364\|INPhiseqgaiiFebDRAFT_105871183	All Organisms → cellular organisms → Bacteria	3051	Open in IMG/M
3300000789\|JGI1027J11758_12506668	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	1105	Open in IMG/M
3300001213\|JGIcombinedJ13530_106160439	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	804	Open in IMG/M
3300003321\|soilH1_10074877	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	1246	Open in IMG/M
3300004156\|Ga0062589_100625446	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	939	Open in IMG/M
3300004463\|Ga0063356_101336624	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	1051	Open in IMG/M
3300004480\|Ga0062592_100001102	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatirosa → Gemmatirosa kalamazoonesis	7034	Open in IMG/M
3300004480\|Ga0062592_102512504	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	518	Open in IMG/M
3300005294\|Ga0065705_10373825	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	920	Open in IMG/M
3300005294\|Ga0065705_10441382	All Organisms → cellular organisms → Bacteria	835	Open in IMG/M
3300005294\|Ga0065705_10616471	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	697	Open in IMG/M
3300005331\|Ga0070670_101865892	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	553	Open in IMG/M
3300005353\|Ga0070669_100724112	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	841	Open in IMG/M
3300005364\|Ga0070673_100205688	All Organisms → cellular organisms → Bacteria	1697	Open in IMG/M
3300005471\|Ga0070698_100001395	All Organisms → cellular organisms → Bacteria	26757	Open in IMG/M
3300005471\|Ga0070698_100089981	All Organisms → cellular organisms → Bacteria	3053	Open in IMG/M
3300005471\|Ga0070698_100205809	All Organisms → cellular organisms → Bacteria	1903	Open in IMG/M
3300005471\|Ga0070698_100836820	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	865	Open in IMG/M
3300005471\|Ga0070698_101489719	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	628	Open in IMG/M
3300005518\|Ga0070699_100253188	All Organisms → cellular organisms → Bacteria	1574	Open in IMG/M
3300005543\|Ga0070672_100308885	All Organisms → cellular organisms → Bacteria	1342	Open in IMG/M
3300005577\|Ga0068857_100188913	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1876	Open in IMG/M
3300005616\|Ga0068852_101781205	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	638	Open in IMG/M
3300005617\|Ga0068859_100207822	All Organisms → cellular organisms → Bacteria	2043	Open in IMG/M
3300005829\|Ga0074479_11138481	All Organisms → cellular organisms → Bacteria	1046	Open in IMG/M
3300005842\|Ga0068858_102303295	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas → Pseudomonas stutzeri group → Pseudomonas stutzeri subgroup → Pseudomonas stutzeri	532	Open in IMG/M
3300006844\|Ga0075428_100602104	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	1174	Open in IMG/M
3300006844\|Ga0075428_101492164	All Organisms → cellular organisms → Bacteria	708	Open in IMG/M
3300006844\|Ga0075428_101636001	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	673	Open in IMG/M
3300006845\|Ga0075421_100466893	All Organisms → cellular organisms → Bacteria	1505	Open in IMG/M
3300006845\|Ga0075421_101200944	All Organisms → cellular organisms → Bacteria	846	Open in IMG/M
3300006845\|Ga0075421_101323156	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	797	Open in IMG/M
3300006845\|Ga0075421_101595239	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	710	Open in IMG/M
3300006846\|Ga0075430_100780103	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	788	Open in IMG/M
3300006846\|Ga0075430_101704573	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	517	Open in IMG/M
3300006846\|Ga0075430_101719628	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	515	Open in IMG/M
3300006847\|Ga0075431_100552442	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	1139	Open in IMG/M
3300006847\|Ga0075431_101181915	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	728	Open in IMG/M
3300006847\|Ga0075431_101420609	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	653	Open in IMG/M
3300006853\|Ga0075420_101440799	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	591	Open in IMG/M
3300006853\|Ga0075420_101677384	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	544	Open in IMG/M
3300006854\|Ga0075425_100174181	All Organisms → cellular organisms → Bacteria	2470	Open in IMG/M
3300006854\|Ga0075425_101468681	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	770	Open in IMG/M
3300006871\|Ga0075434_101635687	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	652	Open in IMG/M
3300006904\|Ga0075424_100177149	All Organisms → cellular organisms → Bacteria	2262	Open in IMG/M
3300006969\|Ga0075419_11411975	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	520	Open in IMG/M
3300006969\|Ga0075419_11491370	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	507	Open in IMG/M
3300007004\|Ga0079218_13380247	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	541	Open in IMG/M
3300009094\|Ga0111539_10413879	All Organisms → cellular organisms → Bacteria	1570	Open in IMG/M
3300009094\|Ga0111539_10506762	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	1406	Open in IMG/M
3300009094\|Ga0111539_10645518	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	1232	Open in IMG/M
3300009094\|Ga0111539_10904479	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	1026	Open in IMG/M
3300009094\|Ga0111539_11807106	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	709	Open in IMG/M
3300009100\|Ga0075418_10513763	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	1286	Open in IMG/M
3300009100\|Ga0075418_10920385	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	945	Open in IMG/M
3300009100\|Ga0075418_11959204	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	638	Open in IMG/M
3300009100\|Ga0075418_12311609	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	587	Open in IMG/M
3300009147\|Ga0114129_11073737	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	1009	Open in IMG/M
3300009156\|Ga0111538_10198700	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	2544	Open in IMG/M
3300009156\|Ga0111538_10258864	All Organisms → cellular organisms → Bacteria	2202	Open in IMG/M
3300009597\|Ga0105259_1016577	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	1502	Open in IMG/M
3300009609\|Ga0105347_1229067	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	757	Open in IMG/M
3300010362\|Ga0126377_10130010	All Organisms → cellular organisms → Bacteria	2339	Open in IMG/M
3300010397\|Ga0134124_10866791	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	907	Open in IMG/M
3300010399\|Ga0134127_10914511	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	933	Open in IMG/M
3300010399\|Ga0134127_13505750	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	514	Open in IMG/M
3300010403\|Ga0134123_10915984	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	884	Open in IMG/M
3300010403\|Ga0134123_11494452	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	719	Open in IMG/M
3300011409\|Ga0137323_1073611	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	753	Open in IMG/M
3300011437\|Ga0137429_1050226	All Organisms → cellular organisms → Bacteria	1219	Open in IMG/M
3300011441\|Ga0137452_1186885	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	702	Open in IMG/M
3300012038\|Ga0137431_1105317	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	793	Open in IMG/M
3300012039\|Ga0137421_1059114	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	1054	Open in IMG/M
3300012143\|Ga0137354_1008606	All Organisms → cellular organisms → Bacteria	1482	Open in IMG/M
3300012172\|Ga0137320_1044204	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	917	Open in IMG/M
3300012179\|Ga0137334_1150306	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	527	Open in IMG/M
3300012204\|Ga0137374_10576592	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	861	Open in IMG/M
3300014879\|Ga0180062_1087947	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	699	Open in IMG/M
3300014882\|Ga0180069_1026855	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	1236	Open in IMG/M
3300014884\|Ga0180104_1000322	All Organisms → cellular organisms → Bacteria	9815	Open in IMG/M
3300014885\|Ga0180063_1022714	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	1720	Open in IMG/M
3300018000\|Ga0184604_10262626	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	605	Open in IMG/M
3300018063\|Ga0184637_10129012	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	1559	Open in IMG/M
3300018081\|Ga0184625_10084972	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	1622	Open in IMG/M
3300018082\|Ga0184639_10523511	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	594	Open in IMG/M
3300018422\|Ga0190265_11000995	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	957	Open in IMG/M
3300018476\|Ga0190274_10179105	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	1833	Open in IMG/M
3300018476\|Ga0190274_11816602	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	704	Open in IMG/M
3300018476\|Ga0190274_11949047	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	683	Open in IMG/M
3300018476\|Ga0190274_13909832	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	505	Open in IMG/M
3300018920\|Ga0190273_11790472	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	559	Open in IMG/M
3300019377\|Ga0190264_11007503	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	666	Open in IMG/M
3300021073\|Ga0210378_10334439	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	566	Open in IMG/M
3300025907\|Ga0207645_10184612	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	1369	Open in IMG/M
3300025908\|Ga0207643_10079249	All Organisms → cellular organisms → Bacteria	1901	Open in IMG/M
3300025918\|Ga0207662_10033513	All Organisms → cellular organisms → Bacteria	2994	Open in IMG/M
3300025925\|Ga0207650_11602273	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	553	Open in IMG/M
3300025960\|Ga0207651_10174641	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	1698	Open in IMG/M
3300026035\|Ga0207703_11798216	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	589	Open in IMG/M
3300026116\|Ga0207674_10486403	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	1193	Open in IMG/M
3300026142\|Ga0207698_12286942	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	553	Open in IMG/M
3300026763\|Ga0207568_103406	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	615	Open in IMG/M
3300027880\|Ga0209481_10468690	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	649	Open in IMG/M
3300027909\|Ga0209382_10259604	All Organisms → cellular organisms → Bacteria	1970	Open in IMG/M
3300027909\|Ga0209382_10650836	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	1140	Open in IMG/M
3300027909\|Ga0209382_11320960	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	729	Open in IMG/M
3300028380\|Ga0268265_12704032	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	502	Open in IMG/M
3300030620\|Ga0302046_10042175	All Organisms → cellular organisms → Bacteria	3722	Open in IMG/M
3300031538\|Ga0310888_10023104	All Organisms → cellular organisms → Bacteria → Acidobacteria	2643	Open in IMG/M
3300031562\|Ga0310886_10001342	All Organisms → cellular organisms → Bacteria → Acidobacteria	7359	Open in IMG/M
3300031576\|Ga0247727_10715888	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	730	Open in IMG/M
3300031740\|Ga0307468_100269768	All Organisms → cellular organisms → Bacteria	1212	Open in IMG/M
3300032002\|Ga0307416_101600780	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	757	Open in IMG/M
3300032179\|Ga0310889_10761706	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	509	Open in IMG/M
3300032180\|Ga0307471_103096690	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	590	Open in IMG/M
3300033485\|Ga0316626_11961601	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	530	Open in IMG/M
3300034690\|Ga0364923_0001230	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatirosa → Gemmatirosa kalamazoonesis	4894	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	54.55%
Host-Associated	Host-Associated	45.45%

Habitat	Taxonomy	Distribution
Plants	Host-Associated → Plants	45.45%
Terrestrial	Environmental → Terrestrial	37.19%
Aquatic	Environmental → Aquatic	17.36%

Habitat	Taxonomy	Distribution
Rhizosphere	Host-Associated → Plants → Rhizosphere	37.19%
Soil	Environmental → Terrestrial → Soil	35.54%
Sediment	Environmental → Aquatic → Sediment	15.70%
Rhizoplane	Host-Associated → Plants → Rhizoplane	8.26%
Freshwater	Environmental → Aquatic → Freshwater	0.83%
Marine	Environmental → Aquatic → Marine	0.83%
Cave	Environmental → Terrestrial → Cave	0.83%
Floodplain	Environmental → Terrestrial → Floodplain	0.83%

Habitat	Taxonomy	Distribution
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	31.41%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	28.93%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	15.70%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	8.26%
Loam	Environmental → Terrestrial → Soil → Loam	5.79%
Soil	Host-Associated → Plants → Rhizosphere → Soil	5.79%
Sediment	Environmental → Aquatic → Freshwater → Sediment	0.83%
Wetlands	Environmental → Aquatic → Marine → Wetlands	0.83%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	0.83%
Unclassified	Environmental → Terrestrial → Cave → Unclassified	0.83%
Sediment	Environmental → Terrestrial → Floodplain → Sediment	0.83%

Habitat	Taxonomy	Distribution
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	31.41%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	15.70%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	14.88%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	8.26%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	5.79%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	5.79%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	4.96%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	4.96%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	2.48%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	1.65%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	0.83%
Sediment	Environmental → Aquatic → Marine → Wetlands → Sediment	0.83%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	0.83%
Unclassified	Environmental → Terrestrial → Cave → Unclassified → Unclassified	0.83%
Unclassified	Environmental → Terrestrial → Floodplain → Sediment → Unclassified	0.83%

Habitat	Taxonomy	Distribution
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	30.58%
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	11.57%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	6.61%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	4.96%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	4.96%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	4.13%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	4.13%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	3.31%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	3.31%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	3.31%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	3.31%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere	2.48%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	2.48%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	1.65%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	1.65%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	0.83%
Wetland	Environmental → Aquatic → Marine → Wetlands → Sediment → Wetland	0.83%
Sediment (Intertidal)	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Sediment (Intertidal)	0.83%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	0.83%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	0.83%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.83%
Sugarcane Root And Bulk Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Sugarcane Root And Bulk Soil	0.83%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	0.83%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	0.83%
Biofilm	Environmental → Terrestrial → Cave → Unclassified → Unclassified → Biofilm	0.83%
Sediment	Environmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment	0.83%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	0.83%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	0.83%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	0.83%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000033	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300000364	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000789	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300001213	Combined assembly of wetland microbial communities from Twitchell Island in the Sacramento Delta (Jan 2013 JGI Velvet Assembly)	Environmental	Open in IMG/M
3300003321	Sugarcane bulk soil Sample H1	Environmental	Open in IMG/M
3300004156	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 1	Environmental	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300004480	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 4	Environmental	Open in IMG/M
3300005294	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 Bulk Soil	Environmental	Open in IMG/M
3300005331	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG	Host-Associated	Open in IMG/M
3300005353	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG	Host-Associated	Open in IMG/M
3300005364	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG	Host-Associated	Open in IMG/M
3300005471	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG	Environmental	Open in IMG/M
3300005518	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG	Environmental	Open in IMG/M
3300005543	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG	Host-Associated	Open in IMG/M
3300005577	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2	Host-Associated	Open in IMG/M
3300005616	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2	Host-Associated	Open in IMG/M
3300005617	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2	Host-Associated	Open in IMG/M
3300005829	Microbial communities from Cathlamet Bay sediment, Columbia River estuary, Oregon - S.190_CBC	Environmental	Open in IMG/M
3300005842	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2	Host-Associated	Open in IMG/M
3300006844	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2	Host-Associated	Open in IMG/M
3300006845	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5	Host-Associated	Open in IMG/M
3300006846	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4	Host-Associated	Open in IMG/M
3300006847	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5	Host-Associated	Open in IMG/M
3300006853	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD4	Host-Associated	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated	Open in IMG/M
3300006904	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3	Host-Associated	Open in IMG/M
3300006969	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD3	Host-Associated	Open in IMG/M
3300007004	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Compost	Environmental	Open in IMG/M
3300009094	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)	Host-Associated	Open in IMG/M
3300009100	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2	Host-Associated	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300009597	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT299	Environmental	Open in IMG/M
3300009609	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT890	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010397	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-4	Environmental	Open in IMG/M
3300010399	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3	Environmental	Open in IMG/M
3300010403	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-3	Environmental	Open in IMG/M
3300011409	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT423_2	Environmental	Open in IMG/M
3300011437	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT736_2	Environmental	Open in IMG/M
3300011441	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT513_2	Environmental	Open in IMG/M
3300012038	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT800_2	Environmental	Open in IMG/M
3300012039	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT534_2	Environmental	Open in IMG/M
3300012143	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT790_2	Environmental	Open in IMG/M
3300012172	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT366_2	Environmental	Open in IMG/M
3300012179	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT262_2	Environmental	Open in IMG/M
3300012204	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_100_16 metaG	Environmental	Open in IMG/M
3300014879	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLIBT45_16_10D	Environmental	Open in IMG/M
3300014882	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLT231B'_16_10D	Environmental	Open in IMG/M
3300014884	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLT730_16_1Da	Environmental	Open in IMG/M
3300014885	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLIBT47_16_10D	Environmental	Open in IMG/M
3300018000	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_5_coex	Environmental	Open in IMG/M
3300018063	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_127_b2	Environmental	Open in IMG/M
3300018081	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_30_b1	Environmental	Open in IMG/M
3300018082	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_170_b2	Environmental	Open in IMG/M
3300018422	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 124 T	Environmental	Open in IMG/M
3300018476	Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 531 T	Environmental	Open in IMG/M
3300018920	Populus adjacent soil microbial communities from riparian zone of Shoshone River, Wyoming, USA - 504 IS	Environmental	Open in IMG/M
3300019377	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 112 T	Environmental	Open in IMG/M
3300021073	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_60_b1 redo	Environmental	Open in IMG/M
3300025907	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025908	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025918	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG (SPAdes)	Environmental	Open in IMG/M
3300025925	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025960	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026035	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026116	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026142	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026763	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G08A4-12 (SPAdes)	Environmental	Open in IMG/M
3300027880	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD3 (SPAdes)	Host-Associated	Open in IMG/M
3300027909	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5 (SPAdes)	Host-Associated	Open in IMG/M
3300028380	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300030620	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT147D111	Environmental	Open in IMG/M
3300031538	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D1	Environmental	Open in IMG/M
3300031562	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D3	Environmental	Open in IMG/M
3300031576	Biofilm microbial communities from Wishing Well Cave, Virginia, United States - WW16-25	Environmental	Open in IMG/M
3300031740	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05	Environmental	Open in IMG/M
3300032002	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3	Host-Associated	Open in IMG/M
3300032179	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D2	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300033485	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_T1_C1_D5_A	Environmental	Open in IMG/M
3300034690	Sediment microbial communities from East River floodplain, Colorado, United States - 60_j17	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
ICChiseqgaiiDRAFT_05829932	3300000033	Soil	RGVPDRLPSLVLLVGFWIPPAIVGVAAADLVQRSTTRVRPALMYAGLMSSVLVYAAVWFLFQLDRIPPYVPGATRDPTYAPPEAVAGLAVVATALVLPVSAIACVLAFRSRARSLRRTTAGRASA*
ICChiseqgaiiDRAFT_07636381	3300000033	Soil	MPDRLPSLVLLVGFWIPPAVAGRAAADLVHRSTTPIRPALIYTALAILALGWSLAWFLFNLSRMPPYIPGATQDPAYAPPEAVAGLALVASALVLPGSAIACVLAFRSRARGLSPIRHR
ICChiseqgaiiDRAFT_07653984	3300000033	Soil	MPDRLPSLVLLVGFWIPPAVAGRAAADLVHRSTTPIRPALIYTALAILALGWSLAWFLFNLSRMPPYIPGATQDPAYAPPEAVAGLAXVASALVLPGSAIACVXAFRSRARXXSPIRHRVVGKP*
INPhiseqgaiiFebDRAFT_1058685473	3300000364	Soil	MILIPDRFPSLVLLVGFWVPPALIGWAAAEFFNRSAVRVRAALPHALLTIFVLGWSAAWFLFQLNRMPPYIPGSTKDPTFAPPEAVAGLAVVAGALVLPGSAIACLLAFHVRRRALRRSAAGR*
INPhiseqgaiiFebDRAFT_1058711835	3300000364	Soil	MMILIPDRFPSLVLLVGFWVPPALIGWAAAEFFNRSAVRVRAALPHALLTIFVLGWSAAWFLFQLNRMPPYIPGSTKDPTFAPPEAVAGLAVVAGALVLPGSAIACLLAFHVRRRALRRSAAGR*
JGI1027J11758_125066682	3300000789	Soil	MMILIPDRFPSLVLLVGFWVPPALIGWAAAEFFNRSAVRVRAALPHALLTIFVLGWSAAWFLFQLNRMPPYIPGSTKDPTFAPPEAVAGLAVVAGALVL
JGIcombinedJ13530_1061604392	3300001213	Wetland	MPDRLPSLIVLVGFWIPPAVAGWAAADLVHRSTTRVRPALIYTALAIFALGWSAAWFLFNLSRMPPYVPGATQDPTYAPPEAVAGLAVVASALVLPGSVIACVLAFRSRGRRLRRTSTSCASP*
soilH1_100748771	3300003321	Sugarcane Root And Bulk Soil	VKLTKVKNVIPDRFPSLVVLAGFWIPPAAIGWAVAELVYRSATRVRVAIIFVVLLIFVITYAAVWFAFNLVRMPPYIPGATMDPALASPRAVTNLAIFTAAFVLPGSVLACLLAFRIRRRMLNKG*
Ga0062589_1006254462	3300004156	Soil	MSRSIALALTFLIPDRLPSLILLVGFWVLPAVVGFSAADLVHRMITRLRPKLIYAVLIIFALGWSAAWFLFQLDRMPPYVPGATHDPTYAPPQAVAGLAVVASALVLPGSVLACMLAFRLRARWLRRMGNPFNEERRGET*
Ga0063356_1013366241	3300004463	Arabidopsis Thaliana Rhizosphere	MPDRLPSLVLLVGFWIPPAVVGFAAADLAHRSARRVRPALIYTVLAIVVLGWSAGWFLFNLGRMPPYVPGATRDPTYAPPEAVAGLAVVASALVLPGSAIACVLAFRSRGRSLRRTAGARVSA*
Ga0062592_1000011025	3300004480	Soil	MPDRLPSLVLLVGFWIPPAVAGRAAADLVHRSTTPIRPALIYTALAILALGWSLAWFLFNLSRMPPYIPGATQDPAYAPPEAVAGLALVASALVLPGSAIACVLAFRSRARRRSPIRHRVVGKP*
Ga0062592_1025125041	3300004480	Soil	MPDRLPSLVVLVGFWIPPAMFGWAAAEFVHRSINRLRSIPIYAVLAIFALAWSAAWFFFNLGRMPPYIPGATRDPTYAPPRAVAGLLVVAIALVLPGSAIASVLAFRR
Ga0065705_103738252	3300005294	Switchgrass Rhizosphere	MAMPDRLPSLVLLVGFWVPAAAAGWTAAGFAHRSATRIRPALLYTVLTTFVLAWAAAWFLFHLTRIPPYIPGASADPHYAPPNVVAGLAVVASALVLPGSAIACVIAFRRRRRSLMRAS
Ga0065705_104413821	3300005294	Switchgrass Rhizosphere	MPDRLPSLLLLVGFWIPPAMVGWTAATFAHRSSFRGRTGVIYTVLSTFVLAWSAAWFFFQIDRMPPYIPGSSHDPTYAPPEAIAGLAVVASALVLPGSAIACWL
Ga0065705_106164712	3300005294	Switchgrass Rhizosphere	MPDRLPSLVLLVGFWIPPAVVGFAAADFVHRSTRRVRPALIYTALAILVLGWAATWFLINLSRMPPYVPGATRDPTYAPPEAVAGLAVVASALVLPGSAIACLLAFRSRGRSLRRESGAQVSA*
Ga0070670_1018658922	3300005331	Switchgrass Rhizosphere	APMPDRLPSLVLLVGFWIPPALVGRAAADLVRRRITRVRTTVVYTLLAAFVLAWAAAWFLFQVNRMPPYVPGATRDPTYAPPKAVAGLAVVATALVLPGSAIACAAAFRSRTRRLSRTSGEHSTWLASFRTPR*
Ga0070669_1007241121	3300005353	Switchgrass Rhizosphere	MINSIALALTLLIPDRLPSLIVLVGFWIPPAVIGIAVADLVHRGTTRIRPALIYTVLMIFVLGYAAAWFVFNLDRMPPYIPGATQDPTFASPQAVKGLAVFTSALVFPGSVIACFLAFRIRARMLRGASTAQAST*
Ga0070673_1002056883	3300005364	Switchgrass Rhizosphere	MPDRLPSLILLVGFWIHPAVVGLAAADLFHRSTKRVRPALIYIVLAIFSLTWSMAWFLFQLKRIPPYVPGATMDPTYAPPEAVAGLAVVASAVVLPGSALASSLAFRLRRRKLERTST*
Ga0070698_10000139515	3300005471	Corn, Switchgrass And Miscanthus Rhizosphere	MVAIPDRLPSLVLLVGFWIPPAVVGHAAAGLVHRSTTRIRRVLIYTVLAILALGWSAAWFLFNLSRMPPYVPGATQDPTFAPPQAVAGLAVVASALVLPGSVIACILAFRRRGRSLRRTSAARVSA*
Ga0070698_1000899811	3300005471	Corn, Switchgrass And Miscanthus Rhizosphere	MAMPDRLPSLVLLVGFWVPAAAAGWTAAGFAHRSATRIRPALLYTVLTTFVLAWAAAWFLFHLTRIPPYIPGASADPHYAPPNVVAGLAVVASALVLPGSAIACVIAFRSRRRSLMRASKERVSA*
Ga0070698_1002058093	3300005471	Corn, Switchgrass And Miscanthus Rhizosphere	MPDRLPSLVLLAGFWIPPAIAGLAAADLVHRTTTRVRPTLIYTLLTTVVLGWSAAWFFFNLSRMPPYVPGATHDPTYAPPEAVAGLAVVACALVLPGSAIACALAFRRRARTLNRTTAADVSA*
Ga0070698_1008368201	3300005471	Corn, Switchgrass And Miscanthus Rhizosphere	MIDSIALALTLLIPDRLPSLIVLVGFWIPPAVIGIAVADLVHRGTTPIRPALIYTVLMIFVLGYAAAWFVFNLDRMPPYIPGATQDPTFASPQAVKGLAVFTSALVFPGSVIACFLAFRIRARMLRGASTAQAST*
Ga0070698_1014897191	3300005471	Corn, Switchgrass And Miscanthus Rhizosphere	MPDRLLSLGLLVGFWIPPAIAGRAAAELAHRNTTRVRPALIYAGLTTFVLGWSLVWFLINLNAMPPYLPGASHDPTYAPPEAVAALVVVATALVLPGSGIACWLAFRSRRRALSRTTAGPASA*
Ga0070699_1002531882	3300005518	Corn, Switchgrass And Miscanthus Rhizosphere	MPDRLPSLVLLVAFWIPPAIAGRAAATFAHRTTTRVRPALLYAGLAAFVLAWSAVWFLTNLSAMPPYIPGASHDPTYAPPEAVAGLAVVTTVLVLPGSAIACVWAFRSRKRSFRRPPQLGGSQ*
Ga0070672_1003088852	3300005543	Miscanthus Rhizosphere	MPDRLPSLVLIVGFWIPPVVAGLAAADLVHRSTRRVRPALIYTLLIAFVLGWSAAWFFVNLNAMPPYLPGATRDPTYAPPEAVAALAVVAGALVLPGSALACALAFRRRARRLSRPTAAHVSP*
Ga0068857_1001889132	3300005577	Corn Rhizosphere	MPDRLPSLVLLVGFWIPPVVAGLAAADLVHRSTRRVHPALIYTLLIGFVPGWSAAWFFVNLNAMPPYLPGATRDPTYAPPEAVAALAVVAGALVLPGSALACALAFRRRARRPSRPTAAHVSP*
Ga0068852_1017812051	3300005616	Corn Rhizosphere	MPDRLPSLVLIVGFWIPPVVAGLAAADLVHRSTRRVHPALIYTLLIGFVLGWSAAWFFVNLNAMPPYLPGATRDPTYAPPEAVAALAVVAGALVLPGSALACALAFRRRARRLGLPTAAHVSP*
Ga0068859_1002078222	3300005617	Switchgrass Rhizosphere	MPDRLPSLVLIVGFWIPPVVAGLAAADLVHRSTRRVRPALIYTLLIGFVLGWSTAWFFVNLNAMPPYLPGATRDPTYAPPEAVAALAVVAGALVLPGSALACALAFRRRARRLSRPTAAHVSP*
Ga0074479_111384811	3300005829	Sediment (Intertidal)	MPDRFPSLVLLAGFWVPAVIAGRTAATFVRQATPRVRPVVVNLGLTAFVVAWSVAWFVFQLNRIPPYVPGATHDPTYAPPEAIAGLAVVAASLVLPGSAIACW
Ga0068858_1023032951	3300005842	Switchgrass Rhizosphere	MHFYLAIPERLPSLVLLVGFWVPAATVGWAAAGFAHRSTRRIRAPLMYALLMTFVLACSAAWFLFQLHRMPPYIPGATVDPTYAPPKAVAWLAVVATALVLPGSALACVLAIHLRVRSLRRASATRASA*
Ga0075428_1006021041	3300006844	Populus Rhizosphere	WVPPAVVGWTAAKLAHHSTPRGGAGLTYAVLSTFVLAWSAAWFLFQLDRMPPYIPGSSHDPTYAPPEAVAGLAVVATALVLPGSAIACWLAFRSRGRSLRRNKTDGS*
Ga0075428_1014921642	3300006844	Populus Rhizosphere	MPDRLPSLVLLVGFWIPPAVVGFAAADLVHRSTARVRPALMYAGLMTSVLVYAAAWFLFQLDRIPPYVPGATRDPTYAPPEAVAGLAVVTTALVLPVSAIACVLAFRSRARSLRRTTAGRASA*
Ga0075428_1016360011	3300006844	Populus Rhizosphere	MPDRLPSLVLLVGFWIPPAAVGWAAAKFAHESIPRSRAALTYAVLAIFVLAWSAAWFLFQLDRMPPYIPGSSRDPTFAPPKAVAGLLFVASALVLPGSVIACALAFRSRRRALMRTSELAVSSDK*
Ga0075421_1004668931	3300006845	Populus Rhizosphere	MPDRLPSLVLLVGFWIPPAVAGRAAADLVHRSTTRIRPALLYTALAIFVLGWSLAWFLFHLSRMPPYIPGATQDPTYAPPEAVAGLAVVASALVLPGSAIACVLAFRSRARGLSPIRHRVAS
Ga0075421_1012009441	3300006845	Populus Rhizosphere	MAIPDRLPSLVLLVGFWVPAAAAGWAAAEVAHRSIPRFRPALLYTVLTTFVLAWAAAWFLFHLTRIPPYIPGASADPHYAPPNVVAGLVVVASALVLPGSAIACVIAFRSRGGRSGALLLGACPPNMALQQMPHTR*
Ga0075421_1013231562	3300006845	Populus Rhizosphere	MPDRLLSLGLLVGIWIPPAIAGRAAADYLHRSATRVRPALMYAGLTTFVLGWSLVWFLINLSAMPPYLPGASHDPTYAPPEAVRGLVVVATALVLPGSAIACWLAFGIRRRVR
Ga0075421_1015952392	3300006845	Populus Rhizosphere	MVAIPDRLPSLVLLVGFWIPPAVVGFAAADLVHRSTTRVRPALIYSGLAVLALGWSAAWFLFNLSRMPPYVPGATQDPTYAPPEAVAGLAVVTSALVLPGSAIACALAFRIHARRLRRRSASRVSA*
Ga0075430_1007801032	3300006846	Populus Rhizosphere	MPDRLPSLVLLVGCWVAPAAAGWVAAGIAHRSTPRVRAILKYAVLTSFVLAWSAVWFLFQLNRMPPYIPGASEDPTYAPPQAVAGLAVVASALVLPVSAIACALAFRS
Ga0075430_1017045731	3300006846	Populus Rhizosphere	MPDRLLSLVLLVGCWIPPAMAGRAAAERVHRSSVGGRPGLVYAGLTSFVLGWTALWFLINRLAMPPYLPGTTQDPSYAPPEAVAALVVVASALVLPVSAIACALAFRRRGRSLERTT*
Ga0075430_1017196282	3300006846	Populus Rhizosphere	MPDRLPSLVLLVGFWIPPAVAGRAAADLVHRSTTRIRPALLYTALAIFVLGWSLAWFLFHLSRMPPYIPGATQDPTYAPPEAVAGLAVVASALVLPGSAIACVLAFRSRARGLSPIRHR
Ga0075431_1005524421	3300006847	Populus Rhizosphere	MPDRLLSLGLLVGFWIPPAIAGRAAAEIEHRSTNRVRPALIYAGLTTFVLAWSAVWFLINLSAMPPYIPGASRDPTYAPPEAVAGLIVVAAALVLPGSAIACALAFRSRRRSLSRTTAGQASA*
Ga0075431_1011819152	3300006847	Populus Rhizosphere	MPDRLPSLVLLVGFWIPPAVVGFAAADLVHRSTTRVRPALLYTGLAVLALGWSAAWFLFNLSRMPPYVPGATQDPTYAPPEAVAGLALVASALVLPGSAIACWLAFRSRGRSLGRTSAARQPT*
Ga0075431_1014206091	3300006847	Populus Rhizosphere	MPDRLPSLVLLVGFWIPPAVAGRAAADLVHRSTTRIRPALLYTALAIFVLGWSLAWFLFHLSRMPPYIPGATQDPTYAPPEAVAGLAVVASALVLPGSAIACVLAFRSRARGLSPIRHRVASKP*
Ga0075420_1014407992	3300006853	Populus Rhizosphere	MPDRLPSLVLLVGCWVAPAAAGWVAAGIAHRSTPRVRAMLKYAVLTSFVLAWSAVWFLFQLNRMPPYIPGASEDPTYAPPQAVAGLAVVASALVLPVSAIACALAFRSR
Ga0075420_1016773842	3300006853	Populus Rhizosphere	SLTNHMPDRLPSLVLLVGCWIPPAVVGALAADLVHRSTTRVRPVLIYAALTTFVLAWAAAWFLSQLNRMPPYVPGATQDPTFAPPEAIAGLGVVAGALVLPLSAIACVLAFRIRGRALGRHQGGAHLA*
Ga0075425_1001741811	3300006854	Populus Rhizosphere	MPDRLPSLLLLVGCWIPPALVGRAAAALVLRPAVRYAALTTFVLGWSAAWFLVNRIAIPPYLPGATEDPAYAPPEAVAGLTVVTAALVLPGSAIACWLAFRSRARRLRLPGAGV*
Ga0075425_1014686813	3300006854	Populus Rhizosphere	MNLLAIPDRLPSLVLLVGFWIAPAAIGWAAAEFAHRNAARIRAALIYTVLMTFVIGWSAAWFLFQLHRMPPYIPGATLDPTYASPQAVAGLAVVAIVLVVPVSAVAC
Ga0075434_1016356872	3300006871	Populus Rhizosphere	RQNQRQDRDRRRPTKAPLGQTLQGSAMPDRLPSLVLLVGFWIPPAVVGVAAADLVHRSTTRVRPALIYTLLAIIALAWSVAWFLFQFRRIPPYVPGATHDPTYAPPEAVLGLAVVASALVVPGSVIACVLAFRSRGRSRRRASAGHVSA*
Ga0075424_1001771493	3300006904	Populus Rhizosphere	MPDRLPSLVLLVGFWIPPAVVGVAAADLVHRSTTRVRPALIYTLLAIIALAWSVAWFLFQFRRIPPYVPGATHDPTYAPPEAVLGLAVVASALVVPGSVIACVLAFRSRGRSRRRASAEHVSA*
Ga0075419_114119751	3300006969	Populus Rhizosphere	MPDRLLSLGLLVGFWIPPAIAGRAAAEYLHRSATRVRPALMYAGLTTFVLGWSLVWFLINLSAMPPYLPGASHDPTYAPPEAVRGLVVVATALVLPGSAIACWLAFRIRRR
Ga0075419_114913702	3300006969	Populus Rhizosphere	PSLVLLVGFWVPPAVVGWTAATFAHRSIPRGGAGLTYAVLSTFVLAWSAAWFLFQLDRMPPYIPGSSHDPTYAPPKAVAGLAVVATALVLPGSAIACWLAFRSRGRSLRRNKTDGS*
Ga0079218_133802471	3300007004	Agricultural Soil	MPDRLPSLVLLVGFWIPPAVVGFAAADLVHRSTTRVRHALIYAVLAIFALVWSAAWFLFNLSRMPPYVPGATQDPTYAPPEAVAGLAVVASALVLPVSLLACVLAFRVARRLRRT
Ga0111539_104138792	3300009094	Populus Rhizosphere	MPDRLPSLVLLVGFWIPPAIVGFAAADLAHRSTTRIRPALIYTLLTILALGSSAVWFLVNLGAMPPYIPGASRDPTYAPPEAVAGLAVVASALVFPGSVIACVLAFRNRGRFLKRTSAAHAQLDAPESIDDVAP*
Ga0111539_105067622	3300009094	Populus Rhizosphere	VILIPDRLPSLVLLVGFWVPPAVIGWAAAWFFHRAEARVRSALPYALLMIFVLMWSAAWFLFQVNRMPPYIPGSTEDPTFASPKAIAGLAIVAGALVLPVSAIACVLAFRLTEKLRPQL*
Ga0111539_106455182	3300009094	Populus Rhizosphere	VTFIAMPDRLPSLLLLVGFWILPAMVGWTAATFAHRSSFRGRTGVIYTVLSTFVLAWSAAWFFFQIDRMPPYIPGSSHDPTYAPPEAIAGLAVVASALVLPGSAIACWLAFRSRRRPLGRTTAGRPSA*
Ga0111539_109044792	3300009094	Populus Rhizosphere	MMILIPDRLPSLILLVGFWVPPAAIGGAAAWFLHRSAVRLRAALLYILLTILVLVWTATWFLFQINRIPPYIPGSSEDPTFAPPKAVAGLAIVASALVLPVSA
Ga0111539_118071061	3300009094	Populus Rhizosphere	MMLIPDRLPSLVLLVGFWVPPAVIGGAAAWFFQRNAVRLRAALPYVLLTAFVLAWAAAWFLFQLNRMPPYIPGSSKDPTFAPPEAVTGLAIVASALVLPVSAVACALAFRICKRVLKRSSTSSE*
Ga0075418_105137632	3300009100	Populus Rhizosphere	VTFLAIPDRLPSLVLLVGFWVPPAVVGWTTAKFAHRSIPRGGAGLTYAVLSTFVLAWSAAWFLFQLHRMPPYIPGSSHDPTYAPPEAVAGLAVVATALVLPGSAIACWLAFRSRARSLRCTTDPQR*
Ga0075418_109203852	3300009100	Populus Rhizosphere	MPDRLASLVLLVGFWIAPARVGFAAADLAHRSTTRIRPALIYTLLTILALGSSAVWFLVNLGAMPPYIPGASRDPTYAPPEAVAGLAVVASALVFPGSVIACVLAFRNRGRFLKRTSAAHAQLDAPESIDDVAP*
Ga0075418_119592041	3300009100	Populus Rhizosphere	GDLKMPDRLLSLVVLVGCWIPPALAGRAAAAFVHRRPTRVTRVYAGLAAFVLAWTALWFLINRIAIPPYLPGATQDPTYAPPEAVAGLAVVAAALVLPLGAIACVVAFRRRGAQLRRAP*
Ga0075418_123116092	3300009100	Populus Rhizosphere	MIRSIALTLTLLIPDRLPSLVLLVGFWIPPAIVGFAVADLIHRSTTRVRPALIYTGLAIFAVGWAAAWFLFQLDRIPPYVPGATMDPTYAPPEAVAGLALVAGALVLPGSAIACVLAFRLRARMLRQTSAERLSA*
Ga0114129_110737372	3300009147	Populus Rhizosphere	MVAIPDRLPSLVLLVGFWIPPAVVGHAAAGLVHRSRTRVRPVLTYTVLAILALGWSAAWFLFNLSRMPPYVPGATQDPTYAPPQAVAGLAVVASALVLPGSVIACILAFRRRGRSLRRTTAARASA*
Ga0111538_101987001	3300009156	Populus Rhizosphere	MMILIPDRLPSLILLVGFWVPPAAIGGAAAWFLHRSAVRLRAALLYVLLTIFVLVWTATWFLFQINRIPPYIPGSSEDPTFAPPKAVAGLAIVASALVLPVSAVACAL
Ga0111538_102588642	3300009156	Populus Rhizosphere	MPDRLPSLVLLVGFWIPPAIVGFAAADLAHRSTTRIRPALIYTFLSILALGSSAVWFLVNLGAMPPYIPGASRDPTYAPPEAVAGLAVVASALVFPGSVIACVLAFRNRGRFLKRTSAAHAQLDAPESIDDVAP*
Ga0105259_10165772	3300009597	Soil	MPDRLPSLVLLVAFWIPPAVVGRAAAEFAHRRTTRVRPALMFAGLATFVLAWSAAWFLVNLSAMPPYVPGASPDPTYRPPEAIAGLAVVSTALVLPVSAITCWLAFRSRGRSNEQPLLKEVE*
Ga0105347_12290672	3300009609	Soil	MMLIPDRLPSLVLLVGFWIPPAVVGWAVAKVAHRSSTGLTYAALVTFVLAWSAAWFLFQLDRMPPYIPGSSRDPTYAPPEAVAGLAVVASALVLPGSTIACAWAFRSRRRALARASA*
Ga0126377_101300103	3300010362	Tropical Forest Soil	MPDRLPSLVLLVGFWIPPAVIGCVAADLVHRSAARVRPALIYTALTTLVVGWSAAWFFINLGRMPPYVPGATHDPTFAPPEAVRGLAVVASALVLPGSAIACVLAFRSRARWLRRRPT*
Ga0134124_108667911	3300010397	Terrestrial Soil	MPDRLPSLILLAGCWVPPALVGRAAAEIANHGAARIRPVLMYFGLTSFVVAWSAAWFLFQLDRIPPYVPGATMDPTYAPPEAVAGLGVVAAALVLPISAIACAVAFRSRAPWSLVTKK*
Ga0134127_109145111	3300010399	Terrestrial Soil	MPDRLPSLILLIGFWIPPAVVGRMAAGLLRRSTTRLRPALMYAGLASLVLGWSAVWFLINLNAMPPYIPGATHDPTYAPPEAVAGLALVATALVLPGSAIACWLAFRSRKRSQ*
Ga0134127_135057501	3300010399	Terrestrial Soil	SLDETSSHLPHSSPAMPDRLPSLVLLVGFWVPPAVIGHAAAGLVHRSVARVRPALIYTVLTAFALVWSAAWFLFQLNRIPPYVPGATMDPTYAPPEAVAGLALVATALVLPVSAIACVLAFRSRARRLSHT*
Ga0134123_109159842	3300010403	Terrestrial Soil	MPDRLPSLVLLGGFWIPPAVVGWRAATLAHRSDARVRPALMYAGLMTFVLVWAAAWFLFQVHRMPPYIPGASMDPTYAPPEAVAGLAVVASAVVLPGSALASSLAFRLRQRKL
Ga0134123_114944522	3300010403	Terrestrial Soil	MPDRLPSLVLLVGFWVPPAVIGHAAAGLVHRSVARVRPALIYTVLTAFALVWSAAWFLFQLNRIPPYVPGATMDPTYAPPEAVAGLALVATALVLPVSAIACVLAFRSRARRLSHT*
Ga0137323_10736112	3300011409	Soil	RLPSLVLLVAFWIPPAVVGRAAAEFAHRRTTRVRPALMFAGLATFVLAWSAAWFLVNLSAMPPYVPGASPDPTYRPPEAIAGLAVVSTALVLPVSAITCWLAFRSRGRSNEQPLLKEVE*
Ga0137429_10502262	3300011437	Soil	MLPDRLPSLVLLVGFWLPPAVVGRAAADLVHRSTTRVRPALIYTVLATFVLGWAAAWFLFNLSRMPPYVPGATQDPTYAPLEAVAGLAVVASALVLPGSAIACVLAFRSRGRSLRRTSAARLSA*
Ga0137452_11868851	3300011441	Soil	MPDRLPSLVLLVAFWIPPAVVGRAAAEFAHRRTTRVRPALMFAGLATFVLAWSAAWFLVNLSAMPPYVPGASPDPTYRPPEAIAGLAVVSTALVLPVSAITCWLAFRSRGRSNEQPLLKE
Ga0137431_11053172	3300012038	Soil	MLPDRLPSLVLLVGFWIPPAAVGRAAAGLVHRSTPRIAPALIYTVLTTFVLAWTAAWFLFNLSRMPPYLPGATQDPTYAAPEAVAGLTVIASAVVLPGTAIACVLAFRSRARRLSRTFAARVSA*
Ga0137421_10591142	3300012039	Soil	MLPDRLPSLVLLVGFWIPPAAVGRAAAGLVHRSTPRIAPALIYTVLTTFVLAWTAAWFLFNLSRMPPYLPGATQDPTYAAPEAVAGLTVIASAVVLPGSAIACVLAFRSRARRLSRTFAARVSA*
Ga0137354_10086064	3300012143	Soil	PPAVVGRAAAEFAHRRTTRVRPALMFAGLATFVLAWSAAWFLVNLSAMPPYVPGASPDPTYRPPEAIAGLAVVSTALVLPVSAITCWLAFRSRGRSNEQPLLKEVE*
Ga0137320_10442042	3300012172	Soil	MPDRLPSLVLLVAFWIPPAVVGRAAAEFAHRRTTRVRPALMFAGLATFVLAWSAAWFLVNLSAMPPYVPGASPDPTYRPPEAIAGLAVVSTALVLPVSEITCWMAFRSRGRSNEQPLLKEVE*
Ga0137334_11503062	3300012179	Soil	MLPDRLPSLVLLVGFWLPPAVVGRAAADLVHRSTTRVRPALIYTVLATFVLGWAAAWFLFNLSRMPPYVPGATQDPTYAPLEAVAGLAVVASALVLPGSAIACVLAFRSRGRS
Ga0137374_105765922	3300012204	Vadose Zone Soil	MPDRLPSLFLLVGCWIPPVVVGRVAADLVHRNITRVRPALIYAALATFVLAWSAIWFFVNLRAMPPYIPGATHDPTFAPPEAVAGLAVVASALVLPVSAIACVLAFRYRGRWLSRTSAVAIVEQLSFMRSAVIGRT*
Ga0180062_10879471	3300014879	Soil	MLPDRLPSIVLLVGFWIPPAAVGRAAAGLVHRSTPRIAPALIYTVLTTFVLAWTAAWFLFNLSRMPPYVPGATQDPTYAPLEAVAGLAVVASALVLPGSAIACVLAFRSRGRSLRRTSAARLSA*
Ga0180069_10268551	3300014882	Soil	MPDRLLSLGLLVGFWIPPAVVGRAAAEFAHRSPTRVRPALMYAGLTSFVLVWSAVWFLINLSAMPPYIPGASHDPTYAPPEAVAGLVIVTTALVLPGSAIAC
Ga0180104_10003223	3300014884	Soil	MLPDRLPSLVLLVGFWIPPAAVGRAAAGLVHRSTPRIAPALIYTVLTTFVLAWTAAWFLFNLSRMPPYLPGATQDPTYAPPEAVAGLTVIASAVVLPGSAIACVLAFRSRARRLSRTFAARVSA*
Ga0180063_10227142	3300014885	Soil	MPDRLPSLVLLVGFWIPPAVVGRAAADLVHRSPTRVRPALVYTVLAILTLGWSAAWFLFNLSRMPPYVPGATQDPTYAPPEAVAGLAVVASALVLPGSAIACLLAFRSRGRSLRRTSGARVSA*
Ga0184604_102626261	3300018000	Groundwater Sediment	MPDRLPSLVLLVGFWIPPAIVGFAAADLVHRSTTRVRPALIYIVLAIFALGWSAAWFLFQLDRIPPYVPGATMDPTYAPPEAVAGLALVASALVLPGSAIACVLAFRGRARSEP
Ga0184637_101290122	3300018063	Groundwater Sediment	MPDRLPSLVLLVGFWIPPAVVGFATADLVHRTTTRVRPALIYTVLAIFALGWSAAWFLFNLSRMPPYVPGAAQDPTYAPPEAVAGLAVVASALVLPGSVIACVLAFRSRGRSLRRTSAARRLD
Ga0184625_100849724	3300018081	Groundwater Sediment	VILIPDRLPSLVLLVSFWVPPAAVGCPVAWFFNRNAARVRSALPYALLMIFVLLWSVAWFLFQINRMPPYIPGSTEDPTFAQPKAIAGLAIVAGALVLPVSAIACVLA
Ga0184639_105235112	3300018082	Groundwater Sediment	MPDRLPSLVLLVGFWIPPAIIGRAAADLFHRSTTRVRPALIYIVLATFVLGWSAAWFLFNLSRMPPYVPGATQDPTYAPPEAVAGLAVMATALVLPGSAIACVLAFRSRGRAKNDG
Ga0190265_110009952	3300018422	Soil	MPDRLPSLVLLVGFWIPPAVIGRVAADLVHRSTKHVRPALIYAMLAILALGWSAAWFLFHLSRIPPYVPGATHDPTYAPPEAVAGLAVVATALVLPVSAIACVLAFRSRARSLRRTTAGRVSA
Ga0190274_101791052	3300018476	Soil	MPDRLPSLIYLVGCWVPPALVGIAAAHVVRQSATHMRPALIYAGLTMLVMAWSATWFLFQLNRIPPYVPGATHDPTYAPLEAVAGLAVVATALVFPLSLIACMVAFRSRERTLR
Ga0190274_118166021	3300018476	Soil	MILIPDRLPSLVLLVGFWIPPAAIGWAAAEFFHRSAVRMRAALPYALLTIFALTWSAAWFLFQLSRMPPYIPGSTEDPTFAPPKAVAWLAVVASALVFPLSAIACGLAFRWRRRALRPSAAGR
Ga0190274_119490471	3300018476	Soil	RVTMILIPDRLPSLVLLVGFWIPPAAIGCAAAWLFQRSAVRVRSALPYVLLIVFVLGWSAAWFLFQLNRMPPYIPGASEDPTFAPPKAIAGLAVVASVLVLPVSALACLLAYRCAEKLRRYVGGSFASQVK
Ga0190274_139098321	3300018476	Soil	MILIPERFPSLVLLVGFWVPPAVIGWAAAEFFRRSAVRVRTVLPYALLTTFVLCWSATWFLFQLNRMPPYIPGASIDPTVSPPRAIAGLAVVASALVLPGSALAC
Ga0190273_117904721	3300018920	Soil	MLLPDRLPSLVLLVGFWIPPAVVGFAVADLVHRSTARIRPALIYIGLAIFALGWSAAWFLFQLDRIPPYVPGATMDPTYAPPEAVAGLAVVASALVLPASVIACMLAFRIR
Ga0190264_110075031	3300019377	Soil	MRSIALALTLLLPDRLPSLVLLVGFWIPPAIVRLAAADLFHRSTTRVRPALIYTGLAIFALGWSAAWFLFQLDRIPPYVPGATMDPTYAPPEAVSGLAVVASALVLPGSAIACMLAFRIRARRLRRTSGAAYRSNGEL
Ga0210378_103344391	3300021073	Groundwater Sediment	RLPSLVLLVGFWIPPAAIGWAAAEFFHRSAVRVRAALPYALLTTFVLGWSAAWFLFQLSRMPPYIPGSSEDPTFAPPKAVAGLAIVASALVLPGSAIACLLAFRWRGRALRCSAGGR
Ga0207645_101846123	3300025907	Miscanthus Rhizosphere	MPDRLPSLVLLVGFWIPPVVAGLAAADLVHRSTRRVRPALIYTLLIAFVLGWSAAWFFVNLNAMPPYLPGATRDPTYAPPEAVAALAVVAGALVLPGSALACALAFRRRARRLSRPT
Ga0207643_100792492	3300025908	Miscanthus Rhizosphere	MPDRLPSLVLLVGFWIPPVVAGLAAADLVHRSTRRVRPALIYTLLIAFVLGWSAAWFFVNLNAMPPYLPGATRDPTYAPPEAVAALAVVAGALVLPGSALACALAFRRRARRLSRPTAAHVSP
Ga0207662_100335133	3300025918	Switchgrass Rhizosphere	MPDRLPSLVLIVGFWIPPVVAGLAAADLVHRSTRRVRPALIYTLLIAFVLGWSAAWFFVNLNAMPPYLPGATRDPTYAPPEAVAALAVVAGALVLPGSALACALAFRRRARRLSRPTAAHVSP
Ga0207650_116022732	3300025925	Switchgrass Rhizosphere	APMPDRLPSLVLLVGFWIPPALVGRAAADLVRRRITRVRTTVVYTLLAAFVLAWAAAWFLFQVNRMPPYVPGATRDPTYAPPKAVAGLAVVATALVLPGSAIACAAAFRSRTRRLSRTSGEHSTWLASFRTPR
Ga0207651_101746412	3300025960	Switchgrass Rhizosphere	MPDRLPSLILLVGFWIHPAVVGLAAADLFHRSTKRVRPALIYIVLAIFSLTWSMAWFLFQLKRIPPYVPGATMDPTYAPPEAVAGLARVATLLVLPVSAIACVLAFRSRARSLSLVR
Ga0207703_117982161	3300026035	Switchgrass Rhizosphere	MHFYLAIPERLPSLVLLVGFWVPAATVGWAAAGFAHRSTRRIRAPLMYALLMTFVLACSAAWFLFQLHRMPPYIPGATVDPTYAPPKAVAWLAVVATALVLPGSALACVLAIHLRVLSLRRASATRIVAFADWTLASAWAMLVMVVRCCNVSSSHR
Ga0207674_104864032	3300026116	Corn Rhizosphere	MLILIPDRLPSLILLISFWIPPAVVGFAVADLVHRSTARVRPALIYTGLAIFALGWSAVWFLFQLDRIPPYVPGATMDPRYAPREAVAGLAIVASALVLPISVIACVLAFRIRRRMLRRTST
Ga0207698_122869421	3300026142	Corn Rhizosphere	MPDRLPSLVLIVGFWIPPVVAGLAAADLAHRSTRRVRPALIYTLLIAFVLGWSAAWFFVNLNAMPPYLPGATRDPTYAPPEAVAALAVVAGALVLPGSALACALAFRRRARRLGLPTAAHVSP
Ga0207568_1034062	3300026763	Soil	AVAGRAAADLVHRSTTPIRPALIYTALAILALGWSLAWFLFNLSRMPPYIPGATQDPAYAPPEAVAGLALVASALVLPGSAIACVLAFRSRARRRSPIRHRVVGKP
Ga0209481_104686902	3300027880	Populus Rhizosphere	PSLVLLVGFWIPPAVAGRAAADLVHRSTTRIRPALLYTALAIFVLGWSLAWFLFHLSRMPPYIPGATQDPTYAPPEAVAGLAVVASALVLPGSAIACVLAFRSRARGLSPIRHRVASKP
Ga0209382_102596044	3300027909	Populus Rhizosphere	MPDRLPSLIVLVAFWIPPAVVGHAAAALVQRSVARVRPALIYTALTIFVLAWAAAWFLFNLRRMPPYIPGATQDPTFAPPEAVVGLAVVASALVLPVSAIACVLAFRRRAPTH
Ga0209382_106508362	3300027909	Populus Rhizosphere	MPDRLLSLGLLVGFWIPPAIAGRAAAEIEHRSTNRVRPALIYAGLTTFVLAWSAVWFLINLSAMPPYIPGASRDPTYAPPEAVAGLIVVAAALVLPGSAIACALAFRSRRRSLSRTNAGQASA
Ga0209382_113209601	3300027909	Populus Rhizosphere	MPDRLPSLVLLVGFWIPPAVAGRAAADLVHRSTTRIRPALLYTALAIFVLGWSLAWFLFHLSRMPPYIPGATQDPTYAPPEAVAGLAVVASALVLPGSAIACVLAFRSRARGLSPIRHRVASKP
Ga0268265_127040321	3300028380	Switchgrass Rhizosphere	MPDRLPSLVLIVGFWIPPVVAGLAAADLAHRSTRRVRPALIYTLLIAFVLGWSAAWFFVNLNAMPPYLPGDTRDPTYASPEAVAALAVVASALVFPGSVIACVLAFGSRGRS
Ga0302046_100421755	3300030620	Soil	MPDRLPSLVLLAGFWIPPVVAGHAAADLVRRAIPRPSPARVRAGLAAFVVAWVAAWFLFNLVRMPPYIPGAELDPTVATPQATAWLALVAGAFILPGSALACALAFRCRARFR
Ga0310888_100231044	3300031538	Soil	MILIPDRLPSLVLLVGFWVPPAAIGGAAAWFFHRNAVRLRAALLYALLTAFVLCWSAAWFLFQFGRMPPYIPGASTDPTFAPPKAVAGLAIVASALVLPVSAVACALAFRICRRILRRSSTSPESA
Ga0310886_100013424	3300031562	Soil	MILIPDRLPSLVLLVGFWIPPAAIGGAAAWFFHRNAVRLRAALLYALLTAFVLCWSAAWFLFQLGRMPPYIPGASTDPTFAPPKAVAGLAIVASALVLPVSAVACALAFRICRRILRRSSTSPESA
Ga0247727_107158882	3300031576	Biofilm	MPDRLLSLGLLVGFWIPPAAVGRAAAEFAHRSTTRVRPALMYAGLTSFVLVWSAAWFLINLSAMPPYGPPDAVAGLVIVATALVLPGSAIACWLAFRSRTRSLRRTTAGRVSA
Ga0307468_1002697682	3300031740	Hardwood Forest Soil	MILIPDRLPSLVLLVGFWIPPAAIGWAAAEFFHRSAVRIRAALPYALLTIFVLGWSAAWFLFQLSRMPPYIPGSSEDPTFAPPKAVAGLAVVASALVFPGSAIACVLAFRGRRRALRRSAPGS
Ga0307416_1016007801	3300032002	Rhizosphere	MVTAMPDRLPSLVLLVGFWIPPAVVGRAAADLVHRSTTRVRPAVIFALLTTFVLMWAAAWFLFQLRRIPPYLPGATQDPTYAPPEAVAGLAVVTSALVLPVSALACALTFRNRARKLRRTPEGRAPA
Ga0310889_107617061	3300032179	Soil	FGADVILIPDRLPSLVLLVGFWVPPAAIGWAAAWFFHRAEARVRSALPYALLMIFVLMWSAAWFLFQVNRMPPYIPGSTEDPTFASPKAIAGLAIVAGALVLPVSAIACVLAFRLTEKLRPQL
Ga0307471_1030966902	3300032180	Hardwood Forest Soil	MAIPDRLPSLVLLVGFWVPAAAAGWTAAGFAHRSATRIRRALLYTVLTTFVLAWAAGWFLFHLTRIPPYIPGASADPHYAPPNVVAGLLVVAGALVLPGSAIACVLAFRRRSLSLRRTTTGRAPA
Ga0316626_119616011	3300033485	Soil	PSLVLLVGFWIPPAVAGAAVAGLVHRGATRVRPALIYTALALAALGWSLAWFFFHLGRMPPYLPGATRDPTYAPPEAVAGLAVVAGALVLPGSVIACVLAFRSRERSLRHTPA
Ga0364923_0001230_469_837	3300034690	Sediment	MPDRLPSLVLLVAFWIPPAVVGRAAAEFAHRRTTRVRPALMFAGLATFVLAWSAAWFLVNLSAMPPYVPGASPDPTYRPPEAIAGLAVVSTALVLPVSAITCWLAFRSRGRSNEQPLLKEVE

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F072075

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences