NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F072029

Metagenome / Metatranscriptome Family F072029

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F072029
Family Type Metagenome / Metatranscriptome
Number of Sequences 121
Average Sequence Length 44 residues
Representative Sequence VPSGGQTTVIQRILERRAQQLPTTHEETTATIAVMLRVVPP
Number of Associated Samples 101
Number of Associated Scaffolds 121

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 100.00 %
% of genes near scaffold ends (potentially truncated) 19.01 %
% of genes from short scaffolds (< 2000 bps) 16.53 %
Associated GOLD sequencing projects 94
AlphaFold2 3D model prediction Yes
3D model pTM-score0.36

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (80.992 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil
(38.017 % of family members)
Environment Ontology (ENVO) Unclassified
(37.190 % of family members)
Earth Microbiome Project Ontology (EMPO) Unclassified
(41.322 % of family members)



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Multiple Sequence Alignments

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 17.39%    β-sheet: 0.00%    Coil/Unstructured: 82.61%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.36
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 121 Family Scaffolds
PF00300His_Phos_1 59.50
PF00578AhpC-TSA 9.92
PF01229Glyco_hydro_39 3.31
PF16691DUF5062 0.83
PF01909NTP_transf_2 0.83
PF06969HemN_C 0.83
PF00589Phage_integrase 0.83
PF01345DUF11 0.83

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 121 Family Scaffolds
COG3664Beta-xylosidaseCarbohydrate transport and metabolism [G] 3.31
COG0635Coproporphyrinogen-III oxidase HemN (oxygen-independent) or related Fe-S oxidoreductaseCoenzyme transport and metabolism [H] 0.83


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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
UnclassifiedrootN/A80.99 %
All OrganismsrootAll Organisms19.01 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300001593|JGI12635J15846_10169668All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria1475Open in IMG/M
3300005587|Ga0066654_10149609All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes1184Open in IMG/M
3300005843|Ga0068860_101065645All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria827Open in IMG/M
3300006086|Ga0075019_10393927All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria846Open in IMG/M
3300009553|Ga0105249_10762176All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria1030Open in IMG/M
3300012205|Ga0137362_10270225All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria1470Open in IMG/M
3300015052|Ga0137411_1380880All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria1034Open in IMG/M
3300016341|Ga0182035_10705591All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria879Open in IMG/M
3300017972|Ga0187781_10081395All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria2237Open in IMG/M
3300021433|Ga0210391_11358002All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria547Open in IMG/M
3300026310|Ga0209239_1364366All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria507Open in IMG/M
3300026538|Ga0209056_10568227All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria575Open in IMG/M
3300027869|Ga0209579_10290388All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria881Open in IMG/M
3300027986|Ga0209168_10614314All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria519Open in IMG/M
3300028879|Ga0302229_10017871All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria4019Open in IMG/M
3300031232|Ga0302323_100794045All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria1040Open in IMG/M
3300031234|Ga0302325_11932331All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria732Open in IMG/M
3300031764|Ga0318535_10262288All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria773Open in IMG/M
3300031764|Ga0318535_10397119All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria615Open in IMG/M
3300031795|Ga0318557_10095899All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria1308Open in IMG/M
3300032055|Ga0318575_10331144All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria771Open in IMG/M
3300032066|Ga0318514_10531581All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria626Open in IMG/M
3300032828|Ga0335080_10159182All Organisms → cellular organisms → Bacteria2498Open in IMG/M



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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil38.02%
Corn RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere6.61%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil5.79%
Vadose Zone SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil4.96%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil4.96%
SoilEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Soil4.96%
Surface SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil3.31%
Tropical PeatlandEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland3.31%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere3.31%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Soil2.48%
Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil2.48%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere2.48%
Switchgrass RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere2.48%
Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil1.65%
Hardwood Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil1.65%
PalsaEnvironmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa1.65%
Corn RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere1.65%
WatershedsEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds0.83%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil0.83%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil0.83%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil0.83%
Corn RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere0.83%
Agricultural SoilEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil0.83%
FenEnvironmental → Terrestrial → Peat → Unclassified → Unclassified → Fen0.83%
Populus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere0.83%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere0.83%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere0.83%

Visualization
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Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
3300001546Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_O1EnvironmentalOpen in IMG/M
3300001593Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M2EnvironmentalOpen in IMG/M
3300005335Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaGHost-AssociatedOpen in IMG/M
3300005355Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaGHost-AssociatedOpen in IMG/M
3300005436Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaGEnvironmentalOpen in IMG/M
3300005467Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaGEnvironmentalOpen in IMG/M
3300005533Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen06_05102014_R1EnvironmentalOpen in IMG/M
3300005587Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_103EnvironmentalOpen in IMG/M
3300005614Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2Host-AssociatedOpen in IMG/M
3300005841Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2Host-AssociatedOpen in IMG/M
3300005843Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2Host-AssociatedOpen in IMG/M
3300006034Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_105EnvironmentalOpen in IMG/M
3300006086Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2013EnvironmentalOpen in IMG/M
3300006903Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD5Host-AssociatedOpen in IMG/M
3300006953Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHMB (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300009174Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaGHost-AssociatedOpen in IMG/M
3300009545Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaGHost-AssociatedOpen in IMG/M
3300009553Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaGHost-AssociatedOpen in IMG/M
3300010048Tropical forest soil microbial communities from Panama - MetaG Plot_11EnvironmentalOpen in IMG/M
3300010325Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_20cm_2_0_1 metaGEnvironmentalOpen in IMG/M
3300010358Tropical forest soil microbial communities from Panama - MetaG Plot_3EnvironmentalOpen in IMG/M
3300010361Tropical forest soil microbial communities from Panama - MetaG Plot_23EnvironmentalOpen in IMG/M
3300010375Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaGHost-AssociatedOpen in IMG/M
3300012203Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaGEnvironmentalOpen in IMG/M
3300012205Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaGEnvironmentalOpen in IMG/M
3300012349Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Sage2_R_115_16 metaGEnvironmentalOpen in IMG/M
3300012685Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaGEnvironmentalOpen in IMG/M
3300014968Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaGHost-AssociatedOpen in IMG/M
3300015052Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (PacBio error correction)EnvironmentalOpen in IMG/M
3300016270Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080EnvironmentalOpen in IMG/M
3300016341Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170EnvironmentalOpen in IMG/M
3300017972Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0715_SJ02_MP02_20_MGEnvironmentalOpen in IMG/M
3300017973Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP10_20_MGEnvironmentalOpen in IMG/M
3300018062Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_SJ02_MP15_20_MGEnvironmentalOpen in IMG/M
3300021178Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-MEnvironmentalOpen in IMG/M
3300021403Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-OEnvironmentalOpen in IMG/M
3300021432Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-MEnvironmentalOpen in IMG/M
3300021433Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-OEnvironmentalOpen in IMG/M
3300021478Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-MEnvironmentalOpen in IMG/M
3300021559Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-MEnvironmentalOpen in IMG/M
3300021560Tropical forest soil microbial communities from Panama - MetaG Plot_4EnvironmentalOpen in IMG/M
3300025903Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025910Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025911Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025912Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025914Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025929Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300026078Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300026310Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_2_20cm (SPAdes)EnvironmentalOpen in IMG/M
3300026538Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114 (SPAdes)EnvironmentalOpen in IMG/M
3300027669Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM1_M1 (SPAdes)EnvironmentalOpen in IMG/M
3300027826Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen06_05102014_R1 (SPAdes)EnvironmentalOpen in IMG/M
3300027869Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen03_05102014_R1 (SPAdes)EnvironmentalOpen in IMG/M
3300027986Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen07_05102014_R1 (SPAdes)EnvironmentalOpen in IMG/M
3300028380Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300028536Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Hybrid Assembly)EnvironmentalOpen in IMG/M
3300028879Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_N1_3EnvironmentalOpen in IMG/M
3300031128Oak Summer Coassembly Site 11 - Champenoux / Amance forestEnvironmentalOpen in IMG/M
3300031231Coassembly Site 11 (all samples) - Champenoux / Amance forestEnvironmentalOpen in IMG/M
3300031232Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Fen_T0_3EnvironmentalOpen in IMG/M
3300031234Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_2EnvironmentalOpen in IMG/M
3300031543Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f20EnvironmentalOpen in IMG/M
3300031544Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f26EnvironmentalOpen in IMG/M
3300031546Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f23EnvironmentalOpen in IMG/M
3300031640Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f23EnvironmentalOpen in IMG/M
3300031719Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2)EnvironmentalOpen in IMG/M
3300031720Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515EnvironmentalOpen in IMG/M
3300031744Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)EnvironmentalOpen in IMG/M
3300031748Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f22EnvironmentalOpen in IMG/M
3300031751Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f24EnvironmentalOpen in IMG/M
3300031763Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f29EnvironmentalOpen in IMG/M
3300031764Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f27EnvironmentalOpen in IMG/M
3300031765Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f22EnvironmentalOpen in IMG/M
3300031769Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f24EnvironmentalOpen in IMG/M
3300031778Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f24EnvironmentalOpen in IMG/M
3300031781Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f20EnvironmentalOpen in IMG/M
3300031792Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f23EnvironmentalOpen in IMG/M
3300031795Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f19EnvironmentalOpen in IMG/M
3300031796Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f24EnvironmentalOpen in IMG/M
3300031797Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f23EnvironmentalOpen in IMG/M
3300031798Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f19EnvironmentalOpen in IMG/M
3300031799Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f21EnvironmentalOpen in IMG/M
3300031821Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f20EnvironmentalOpen in IMG/M
3300031835Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f21EnvironmentalOpen in IMG/M
3300031879Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2)EnvironmentalOpen in IMG/M
3300031912Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)EnvironmentalOpen in IMG/M
3300031941Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX080EnvironmentalOpen in IMG/M
3300031946Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF172EnvironmentalOpen in IMG/M
3300031962Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515EnvironmentalOpen in IMG/M
3300032035Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF170EnvironmentalOpen in IMG/M
3300032042Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f26EnvironmentalOpen in IMG/M
3300032052Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f19EnvironmentalOpen in IMG/M
3300032055Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f23EnvironmentalOpen in IMG/M
3300032063Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f17EnvironmentalOpen in IMG/M
3300032066Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f18EnvironmentalOpen in IMG/M
3300032067Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f22EnvironmentalOpen in IMG/M
3300032090Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f22EnvironmentalOpen in IMG/M
3300032783Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.3EnvironmentalOpen in IMG/M
3300032828Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.4EnvironmentalOpen in IMG/M
3300032892Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.5EnvironmentalOpen in IMG/M
3300032895Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.3EnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
JGI12659J15293_1009757423300001546Forest SoilMSSGGQTTVIQRILERRAERPPANHEETTATIAVMLRVV
JGI12635J15846_1016966813300001593Forest SoilMPAGGHTTVIQRILERRAARATVEETTATIAVMLRVVPPPRALLVCQDTGVRQQL
Ga0070666_1050533913300005335Switchgrass RhizosphereMRSGGQTTVIQRILERRAEKPPEIQEDTSATIAVMLRVVPPPRALLVFEN
Ga0070671_10125126823300005355Switchgrass RhizosphereMRAGGQTTVIQRVLERRAQQPPAIQDDTSSTIAVMLRCLPPPR
Ga0070713_10022320513300005436Corn, Switchgrass And Miscanthus RhizosphereMGLMGRGGQTTVIQRILERRAAKPATATEGTTATVAVMVRL
Ga0070706_10069001723300005467Corn, Switchgrass And Miscanthus RhizosphereVPTGGQTTVIQRILERRAQQLPATHEETTATIAVMLRVVPP
Ga0070734_1066490323300005533Surface SoilMPIGGQTTVIQRILERRAERPAEANEGTTATVAVML
Ga0066654_1014960913300005587SoilMPAGGHTTVIQRILERRAARVSVEETTATIAVMLRVVPPPRALLVCQDAAVR
Ga0068856_10169280223300005614Corn RhizosphereMRAGGQTTVIQRVLERRAQQPPAIQDDTSSTIAVMLRCLPPPRA
Ga0068863_10158845713300005841Switchgrass RhizosphereMRAGGQTTVIQRVLERRAQQPPAIQDDTSSTIAVMLRCLP
Ga0068860_10106564513300005843Switchgrass RhizosphereMTPRGGHTTVIQRILEKRAERPPVGEDTTETVAVMVRTLPPPKALLVCRDP
Ga0066656_1045839613300006034SoilMPAGGHTTVIQRILERRAARVSVEETTATIAVMLRVV
Ga0075019_1039392713300006086WatershedsMRTGGHTTVIQRILERRAGRPPATQEETTATIAVMLRVVPPSRALLVCQN
Ga0075426_1111199023300006903Populus RhizosphereMRTGGQTTVIKRVLERRAQKPPAIQDDTTATIAVML
Ga0074063_1004163833300006953SoilVPTGGQTTVIQRILERRAERPPANSEETTASIAVMLRLVPPPRAL
Ga0105241_1146681923300009174Corn RhizosphereMRSGGQTTVIQRILERRAEKPPEIQEDTSATIAVMLRVVPPPRALLVFE
Ga0105241_1162186023300009174Corn RhizosphereMRTGGQTTVIQRILERRAEKPPEIQEDTSATIAVMLRVL
Ga0105237_1033650313300009545Corn RhizosphereMRSGGQTTVIQRILEKRAHTPPQLQEDTSATISVMLRVLPPPRTLLAFDEA
Ga0105249_1076217623300009553Switchgrass RhizosphereMRTGGQTTVIQRILERRAEKPPEIQEDTSATIAVMLRVVPPPRALLVFENES
Ga0126373_1212120723300010048Tropical Forest SoilVPPGGQTTVIQRILERRAQRLPATQEETTATIAVML
Ga0134064_1000006913300010325Grasslands SoilMRAGGHTTVIQRILERRAAEATPEETTATIAVMLRVM
Ga0126370_1170305723300010358Tropical Forest SoilVASGGQTTVIQRILERRAARPPTSSEETTASIAVMLRVVPPP
Ga0126378_1095429813300010361Tropical Forest SoilMRAGGQTTVIQRVLERRAQQPPTKEDDTSSTIAVMLRC
Ga0126378_1133135023300010361Tropical Forest SoilMPQGGQTTVIQRILERRAQRPPAEHEETTATIAVMLRVVSPPKALLVCQ
Ga0126378_1187066523300010361Tropical Forest SoilMAYGGQTTVIQRILERRAERPAEPHEGTTATLAVMLRVLL
Ga0105239_1321616913300010375Corn RhizosphereMRTGGQTTVIKRVLERRAQKPPAIQDDTTATIAVMLRVLPP
Ga0105239_1324613423300010375Corn RhizosphereMRSGGQTTVIQRILERRAEKPPEIQEDTSATIAVMLRVVPPTRALLVIENE
Ga0137399_1109319713300012203Vadose Zone SoilMPAGGHTTVIQRILERRAARATVEETTATIAVMLRVMPPPRAL
Ga0137362_1027022513300012205Vadose Zone SoilMPTGGHTTVIQRILERRAARASVEETTATIAVMLRVVPPPRALLVCQDPVVR
Ga0137387_1057601723300012349Vadose Zone SoilMPAGGHTTVIQRILERRAARATVEETTATIAVMLRVLPPPRALLVCQDAVVREQLER
Ga0137397_1055511713300012685Vadose Zone SoilMVPVRAGGQTTVIQRILDRRAQHPPAIQDDTTATIAVMLRVLPPPRAL
Ga0157379_1165045613300014968Switchgrass RhizosphereMRAGGQTTVIRRVLERRAQQPPTIQDDTSSTIAVMLR
Ga0137411_138088013300015052Vadose Zone SoilMPAGGHTTVIQRILERRAARATVDETTATIAVMLRVVPPPRALLVCQDAVVRQQL
Ga0182036_1107488313300016270SoilVPSGGQTTVIQRILERRAQRPLDTNGETTATLAVMLRVVPPPKAL
Ga0182035_1070559113300016341SoilVPSGGGQTTVIQRILERRAQRPPTAQEETTATIAVMLRVVPLPKALLVCHDS
Ga0187781_1008139543300017972Tropical PeatlandMPSGGQTTVIQRILERRTQRSRATREETTATIAVMLRVIAPPKALLVFHDPVV
Ga0187781_1013285813300017972Tropical PeatlandMASGGQTTVIQRILERRAQRPESSHEETTATIAVML
Ga0187780_1111985313300017973Tropical PeatlandMAHGGQTTVIQRILERRAERPAEAHEGTTATVAVML
Ga0187784_1060612223300018062Tropical PeatlandMPSGGQTTVIQRILERRTQRSRATREETTATIAVMLRVIAPP
Ga0210408_1079113313300021178SoilMAAGGQTTVIQRILERRAERPPQNTEETTASIAVMLRVVPPPKALLVILDPVLRQQ
Ga0210397_1096508023300021403SoilMPAGGHTTVIQRILERRAARATVDETTATIAVMLRVVPPPRALL
Ga0210384_1025889413300021432SoilMAAGGQTTVIQRILERRAERPPQNTEETTASIAVMLRVVPPPKALLV
Ga0210384_1038394323300021432SoilMRTGGQTTVIQRVLERRAQQPPTIEDDTSSTIAVM
Ga0210391_1135800213300021433SoilMPIGGQTTVIQRILERRAERPAEANEGTTATVAVMLRVLPPPK
Ga0210402_1135329523300021478SoilMAAGGQTTVIQRILERRAERPPQNTEETTASIAVMLRVVPP
Ga0210409_1019884443300021559SoilMPTGGGHTTVIQRILERRAERLPASPTDTTGTIAVMLRVV
Ga0210409_1162264913300021559SoilMAAGGQTTVIQRILERRAEGATPEETTATLAVMLRVVPPARA
Ga0126371_1210699723300021560Tropical Forest SoilVPSGGQTTVIQRILERRAQQLPATHEETTATIAVMLRVVP
Ga0207680_1040329013300025903Switchgrass RhizosphereMRSGGQTTVIQRILEKRAQKPPEIQEDTSATIAVMLRVLPPPRAML
Ga0207680_1120604623300025903Switchgrass RhizosphereMRSGGQTTVIQRILERRAEKPPEIQEDTSATIAVML
Ga0207684_1078662113300025910Corn, Switchgrass And Miscanthus RhizosphereVPTGGQTTVIQRILERRAQQLPATHEETTATIAVMLRVVPPPKTLL
Ga0207654_1003918413300025911Corn RhizosphereMRSGGQTTVIQRILERRAEKPPEIQEDTSATIAVMLRVVP
Ga0207707_1118238213300025912Corn RhizosphereMRSGGQTTVIQRILERRAEKPPEIQEDTSATIAVM
Ga0207671_1020536813300025914Corn RhizosphereMRSGGQTTVIQRILEKRAHTPPQLQEDTSATISVMLRVLP
Ga0207671_1065276113300025914Corn RhizosphereVPTGGQTTVIQRILERRAERPPANSEETTASIAVMLRLVP
Ga0207664_1009337713300025929Agricultural SoilVPSGGHTTVIQRILERRAQQLPTTHEETTATLAVMLRVVPPAKA
Ga0207702_1060865833300026078Corn RhizosphereVPSGGHTTVIQRILERRAQQLPTTHEETTATLAVML
Ga0209239_136436613300026310Grasslands SoilMPAGGHTTVIQRILERRAARASVEETTATIAVMLRVVPPPRALLVCQDAA
Ga0209056_1056822723300026538SoilMPAGGHTTVIQRILERRAARATVEETTATIAVMLRVLPPPRALLVCQDAVVREQL
Ga0208981_115066913300027669Forest SoilMRSGGQTTVIQRILEKRAQKPPEIQEDTSATIAVMLRVLP
Ga0209060_1033275013300027826Surface SoilMRTGGGQTTMVQRVLERRAAEPPVPHEGTTAATIAVMT
Ga0209579_1029038823300027869Surface SoilMPTGGGHTTVIQRILERRAERLPAGTTETTGTIAVMLRVMPPPKALLICRDQ
Ga0209168_1061431423300027986Surface SoilMPTGGGHTTVIQRILERRAERLPAGTTETTGTIAVMLRVMPPPKALLICRDQR
Ga0268265_1041844923300028380Switchgrass RhizosphereMRAGGQTTVIQRILERRAQKPPEIQEDTSATIAVMLRVLPPPRALVLVEN
Ga0137415_1075299223300028536Vadose Zone SoilMRSGGQTTVIQRILEKRAQKPPEIQEDTSATIAVMLRVLPPP
Ga0302229_1001787163300028879PalsaMAGGHTTMIQRVLERRAEKPPSSDEGTSATIAVMVRVLAP
Ga0170823_1301935713300031128Forest SoilMAAGGQTTVIQRILERRAERPPQNTEETTASIAVM
Ga0170824_10557920713300031231Forest SoilMAAGGQTTVIQRILERRAERPPQNTEETTASIAVMLRVVPPPKAL
Ga0302323_10079404523300031232FenMRSGGQTTVIQRILERRAEKPPEIHEDTSATIAVMLRVLPPPHALLVFADE
Ga0302325_1193233123300031234PalsaMSPGGQTTVIQRILERRAERPPTTHEETTATIAVMLRVVPPPQALLVCHDAQLR
Ga0318516_1057081123300031543SoilVPPGGQTTVIRRILERRSQQLPGTHEETTATIAVMLRVVAPPKALLVCQDPTLRR
Ga0318534_1002700553300031544SoilVPQAGQTTVIRRILERRSQQLAGTHEETTATIAVML
Ga0318534_1010991153300031544SoilVPSGGGQTTVIQRILERRAQRPPTAQEETTATIAVMLRVVPLPKAL
Ga0318538_1066207413300031546SoilVPSGGGQTTVIQRILERRAQRPPTAQEETTATIAV
Ga0318555_1047053823300031640SoilVPSGGQTTVIQRILERRAQQLPTTHEETTATIAVMLR
Ga0306917_1009128613300031719SoilVPSGGQTTVIQRILERRAQQLPNTHEETTATIAVMLRV
Ga0307469_1042296433300031720Hardwood Forest SoilMASGGHTTVIQRILERRAERPPTQEGTTATVAVMLRVV
Ga0306918_1048678233300031744SoilVPSGGQTTVIQRILERRAQQLPNTHEETTATIAVMLR
Ga0318492_1070195813300031748SoilVPSSGQTTVIQRILERRAQRLPSTHEETTATLAVMLRVVPPQ
Ga0318494_1006334813300031751SoilVPSGGQTTVIQRILERRAQQLPNTHEETTATIAVML
Ga0318537_1026608323300031763SoilVPSGGGQTTVIQRILERRAQRPPTAQEETTATIAVMLRV
Ga0318535_1026228813300031764SoilVPQAGQTTVIRRILERRSQQLAGTHEETTATIAVMLRVVPPPKALLVCQD
Ga0318535_1039711913300031764SoilVPSSGQTTVIQRILERRAQRLPSTHEETTATLAVMLRVVPPQKALLVCQDP
Ga0318554_1030805313300031765SoilVPSGGQTTVIQRILERRAEHLRATPEETTASIAVMLRVVPPAKALLVCRDGELRGQ
Ga0318526_1031805823300031769SoilVPSGGGQTTVIQRILERRAQRPPTAQEETTATIAVMLRVVPL
Ga0318498_1045890423300031778SoilVPSSGQTTVIQRILERRAQRLPSTHEETTATLAVMLRVVPPQKALLVCQDPAL
Ga0318547_1016033433300031781SoilVPQGGQTTVIQRILERRAQRLAVSHEETTASIGVMLRVVPPPKAMLM
Ga0318529_1026161123300031792SoilVPSGGGQTTVIQRILERRAQRPPTAQEETTATIAVMLRVVPLPK
Ga0318529_1037261313300031792SoilVPSGGQTTVIQRILERRAQQLPTTHEETTATIAVMLRVVPP
Ga0318557_1009589933300031795SoilVPSGGQTTVIQRILERRAQQLPTTHEETTATIAVMLRVVPPPKALLVCQD
Ga0318557_1012898013300031795SoilVPQAGQTTVIRRILERRSQQLAGTHEETTAAIAVM
Ga0318576_1000460873300031796SoilVPSGGQTTVIQRILERRAQQLPTTHEETTATIAVML
Ga0318550_1027726913300031797SoilVPSGGQTTVIQRILERRAQRLPSTHEETTATIAVMLRVVPPPTALLVCQDPPLRRQL
Ga0318523_1033626923300031798SoilVPQAGQTTVIRRILERRSQQLAGTHEETTATIAVMLRVVPPPKALLE
Ga0318565_1013776833300031799SoilVPSGGQTTVIQRILERRAQQLPTTHEETTATIAVM
Ga0318565_1042989313300031799SoilVPSSGQTTVIQRILERRAQRLPSTHEETTATLAVMLRVVPPQKAL
Ga0318567_1037758823300031821SoilVPSGGGQTTVIQRILERRAQRPPTAQEETTATIAVMLRVVPLPKALL
Ga0318517_1001394953300031835SoilVPQAEQTTVIRRILERRSQQLAGTHEETTAAIAVMLRVLPPPKALLVC
Ga0306919_1019315043300031879SoilVPQAGQTTVIRRILERRSQQLAGTHEETTATIAVMLRVLPPPKAL
Ga0306919_1123346523300031879SoilVPSGGQTTVIQRILERRAQQLPNTHEETTATIAVMLRVVPPPKALL
Ga0306921_1222755323300031912SoilVPPGGQTTVIRRILERRSQQLPGTHEETTATIAVMLRVVAP
Ga0310912_1016303913300031941SoilVPSGGQTTVIQRILERRAQRLPSTHEETTATIAVMLRVVPPPTAL
Ga0310910_1013175153300031946SoilVPSGGQTTVIQRILERRAQQLPNTHEETTATIAVMLRVVPPPKALLVCQ
Ga0307479_1059504113300031962Hardwood Forest SoilMPTGGHTTVIQRILERRAERLPAGSTETTGTIAVML
Ga0310911_1052074323300032035SoilVPQAGQTTVIRRILERRSQQLAGTHEETTATIAVMLR
Ga0318545_1014343123300032042SoilVPQAGQTTVIRRILERRSQQLAGTHEETTAAIAVMLRVLP
Ga0318506_1023344223300032052SoilVPSGGQTTVIQRILERRAEHLRATPEETTASIAVMLRVVPPAKALLVCRDGELRGQL
Ga0318506_1027578613300032052SoilVPSGGQTTVIQRILERRAQQLPNTHEETTATIAVMLRVVPPPKALLVC
Ga0318575_1022477013300032055SoilMSTRGGSVPQGGQTTVIQRILERRAQRLAVSHEETTASIGVML
Ga0318575_1033114423300032055SoilVPPSGQTTVIQRILERRSQRLPSTHEETTATIAVMLRVVPPPKALLACQD
Ga0318504_1025609513300032063SoilVPSGGQTTVIQRILERRAQQLPTTHEETTATIAVMLRVVPPPKALLVCQDPSL
Ga0318504_1045671523300032063SoilVPPSGQTTVIQRILERRAQRPPTTHEETTATIAVMLRVVPPPKALLVCQD
Ga0318514_1053158123300032066SoilVPQGGQTTVIQRILERRAQRLAVSHEETTASIGVMLRVVPPPKAMLMCERA
Ga0318524_1079661023300032067SoilLTRTGGQTTVIQRILEKRAHKPPQVQEDTSSTIAVML
Ga0318518_1058252513300032090SoilVPSGGQTTVIQRILERRAQRPLDTNGETTATLAVML
Ga0335079_1193793913300032783SoilVAAGGQTTVIQRILERRAERPPANTEETTASIAVM
Ga0335080_1015918253300032828SoilMPLGGQTTVIQRLLERRAERPAEAHEGTTATVAVMLRVLPA
Ga0335080_1062358233300032828SoilVPSGGHTTVIQRILERRAHQLPTTHEETTATLAVMLRVVPP
Ga0335081_1022007373300032892SoilMPSGGHTTVIQRILERRAERPAASQEGTTATVAVMLRVVPPPKALLVCADPNVRRLIEE
Ga0335074_1029729613300032895SoilMRTGGQTTVIKRVLERRAQQPSAIQEDTTATIAVMLRVLPPPRALVA
Ga0335074_1048445013300032895SoilMRTGGQTTVIKRVLERRAQQPSAIQEDTTATIAVMLRVLPPPRALVAI


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