NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Metagenome / Metatranscriptome Family F072002

Metagenome / Metatranscriptome Family F072002

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
Select file to download:
   Download


Overview

Basic Information
Family ID F072002
Family Type Metagenome / Metatranscriptome
Number of Sequences 121
Average Sequence Length 47 residues
Representative Sequence MWADHGVEFFIHPAMQASPEMGFPEFFRQDRDGQPRGVIQVVKAARL
Number of Associated Samples 109
Number of Associated Scaffolds 121

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 19.01 %
% of genes near scaffold ends (potentially truncated) 78.51 %
% of genes from short scaffolds (< 2000 bps) 90.08 %
Associated GOLD sequencing projects 103
AlphaFold2 3D model prediction Yes
3D model pTM-score0.37

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
Powered by Skylign

Most Common Taxonomy
Group Bacteria (99.174 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil
(9.917 % of family members)
Environment Ontology (ENVO) Unclassified
(21.488 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
(49.587 % of family members)


 ⦗Top⦘

Multiple Sequence Alignments

Select alignment to view:      

 ⦗Top⦘

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 13.33%    β-sheet: 2.67%    Coil/Unstructured: 84.00%
Feature Viewer
Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  		pTM-score: 0.37
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

 ⦗Top⦘

Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 121 Family Scaffolds
PF01381HTH_3 74.38
PF02517Rce1-like 2.48
PF00436SSB 1.65
PF07676PD40 1.65
PF04365BrnT_toxin 0.83
PF13561adh_short_C2 0.83
PF10415FumaraseC_C 0.83
PF05717TnpB_IS66 0.83
PF02472ExbD 0.83
PF00271Helicase_C 0.83
PF00378ECH_1 0.83
PF01850PIN 0.83
PF13361UvrD_C 0.83
PF13414TPR_11 0.83
PF13204DUF4038 0.83
PF13181TPR_8 0.83
PF09729Gti1_Pac2 0.83
PF12838Fer4_7 0.83
PF04366Ysc84 0.83

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 121 Family Scaffolds
COG1266Membrane protease YdiL, CAAX protease familyPosttranslational modification, protein turnover, chaperones [O] 2.48
COG4449Predicted protease, Abi (CAAX) familyGeneral function prediction only [R] 2.48
COG0629Single-stranded DNA-binding proteinReplication, recombination and repair [L] 1.65
COG2965Primosomal replication protein NReplication, recombination and repair [L] 1.65
COG0848Biopolymer transport protein ExbDIntracellular trafficking, secretion, and vesicular transport [U] 0.83
COG2929Ribonuclease BrnT, toxin component of the BrnT-BrnA toxin-antitoxin systemDefense mechanisms [V] 0.83
COG2930Lipid-binding SYLF domain, Ysc84/FYVE familyLipid transport and metabolism [I] 0.83
COG3436TransposaseMobilome: prophages, transposons [X] 0.83

 ⦗Top⦘

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
All OrganismsrootAll Organisms100.00 %
UnclassifiedrootN/A0.00 %

Visualization
Powered by ApexCharts

Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300001867|JGI12627J18819_10486946All Organisms → cellular organisms → Bacteria → Acidobacteria507Open in IMG/M
3300004080|Ga0062385_10800777All Organisms → cellular organisms → Bacteria617Open in IMG/M
3300005166|Ga0066674_10371971All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales668Open in IMG/M
3300005332|Ga0066388_106543065All Organisms → cellular organisms → Bacteria → Acidobacteria587Open in IMG/M
3300005340|Ga0070689_100950246All Organisms → cellular organisms → Bacteria762Open in IMG/M
3300005436|Ga0070713_101362756All Organisms → cellular organisms → Bacteria → Acidobacteria688Open in IMG/M
3300005541|Ga0070733_10299521All Organisms → cellular organisms → Bacteria → Acidobacteria1062Open in IMG/M
3300005602|Ga0070762_10717810All Organisms → cellular organisms → Bacteria672Open in IMG/M
3300005921|Ga0070766_10566172All Organisms → cellular organisms → Bacteria → Acidobacteria760Open in IMG/M
3300005993|Ga0080027_10031188All Organisms → cellular organisms → Bacteria1901Open in IMG/M
3300005993|Ga0080027_10377843All Organisms → cellular organisms → Bacteria → Acidobacteria569Open in IMG/M
3300006028|Ga0070717_10035747All Organisms → cellular organisms → Bacteria4025Open in IMG/M
3300006059|Ga0075017_100213122All Organisms → cellular organisms → Bacteria1401Open in IMG/M
3300006059|Ga0075017_101258633All Organisms → cellular organisms → Bacteria580Open in IMG/M
3300006102|Ga0075015_100426598All Organisms → cellular organisms → Bacteria → Acidobacteria752Open in IMG/M
3300007258|Ga0099793_10679587All Organisms → cellular organisms → Bacteria → Acidobacteria519Open in IMG/M
3300009012|Ga0066710_100694530All Organisms → cellular organisms → Bacteria → Proteobacteria1551Open in IMG/M
3300009029|Ga0066793_10025477All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales3258Open in IMG/M
3300009029|Ga0066793_10217527All Organisms → cellular organisms → Bacteria → Acidobacteria1110Open in IMG/M
3300009088|Ga0099830_10312113All Organisms → cellular organisms → Bacteria1257Open in IMG/M
3300009137|Ga0066709_100478929All Organisms → cellular organisms → Bacteria1748Open in IMG/M
3300009400|Ga0116854_1005881All Organisms → cellular organisms → Bacteria2872Open in IMG/M
3300009521|Ga0116222_1001200All Organisms → cellular organisms → Bacteria14614Open in IMG/M
3300009553|Ga0105249_10870672All Organisms → cellular organisms → Bacteria → Proteobacteria967Open in IMG/M
3300009623|Ga0116133_1143389All Organisms → cellular organisms → Bacteria → Acidobacteria624Open in IMG/M
3300009635|Ga0116117_1066255All Organisms → cellular organisms → Bacteria → Acidobacteria891Open in IMG/M
3300010379|Ga0136449_104086267All Organisms → cellular organisms → Bacteria → Acidobacteria543Open in IMG/M
3300010379|Ga0136449_104533096All Organisms → cellular organisms → Bacteria → Acidobacteria510Open in IMG/M
3300011120|Ga0150983_10716337All Organisms → cellular organisms → Bacteria → Acidobacteria679Open in IMG/M
3300011120|Ga0150983_13068390All Organisms → cellular organisms → Bacteria → Acidobacteria569Open in IMG/M
3300012211|Ga0137377_11166427All Organisms → cellular organisms → Bacteria → Acidobacteria700Open in IMG/M
3300012212|Ga0150985_102751804All Organisms → cellular organisms → Bacteria → Acidobacteria779Open in IMG/M
3300012212|Ga0150985_111579561All Organisms → cellular organisms → Bacteria → Acidobacteria914Open in IMG/M
3300012285|Ga0137370_10134343All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1420Open in IMG/M
3300012361|Ga0137360_11450941All Organisms → cellular organisms → Bacteria → Acidobacteria590Open in IMG/M
3300012362|Ga0137361_11643277All Organisms → cellular organisms → Bacteria → Acidobacteria563Open in IMG/M
3300012469|Ga0150984_103374980All Organisms → cellular organisms → Bacteria → Acidobacteria507Open in IMG/M
3300013104|Ga0157370_11907424All Organisms → cellular organisms → Bacteria → Acidobacteria533Open in IMG/M
3300014151|Ga0181539_1288537All Organisms → cellular organisms → Bacteria → Acidobacteria605Open in IMG/M
3300014158|Ga0181521_10234442All Organisms → cellular organisms → Bacteria → Acidobacteria979Open in IMG/M
3300014489|Ga0182018_10498272All Organisms → cellular organisms → Bacteria → Acidobacteria644Open in IMG/M
3300014493|Ga0182016_10238819All Organisms → cellular organisms → Bacteria → Acidobacteria1146Open in IMG/M
3300014498|Ga0182019_10832284All Organisms → cellular organisms → Bacteria → Acidobacteria662Open in IMG/M
3300014501|Ga0182024_10504565All Organisms → cellular organisms → Bacteria1537Open in IMG/M
3300014502|Ga0182021_11576501All Organisms → cellular organisms → Bacteria → Acidobacteria791Open in IMG/M
3300014502|Ga0182021_12211575All Organisms → cellular organisms → Bacteria → Acidobacteria662Open in IMG/M
3300014654|Ga0181525_10499179All Organisms → cellular organisms → Bacteria → Acidobacteria673Open in IMG/M
3300014655|Ga0181516_10312017All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales800Open in IMG/M
3300014657|Ga0181522_10875303All Organisms → cellular organisms → Bacteria → Acidobacteria553Open in IMG/M
3300014745|Ga0157377_11361541All Organisms → cellular organisms → Bacteria → Acidobacteria558Open in IMG/M
3300014838|Ga0182030_10100186All Organisms → cellular organisms → Bacteria → Proteobacteria4007Open in IMG/M
3300014838|Ga0182030_10319043All Organisms → cellular organisms → Bacteria → Proteobacteria1693Open in IMG/M
3300015195|Ga0167658_1000018All Organisms → cellular organisms → Bacteria → Acidobacteria143525Open in IMG/M
3300015371|Ga0132258_11134909All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales1976Open in IMG/M
3300017934|Ga0187803_10160975All Organisms → cellular organisms → Bacteria → Acidobacteria883Open in IMG/M
3300017948|Ga0187847_10618917All Organisms → cellular organisms → Bacteria → Acidobacteria606Open in IMG/M
3300017999|Ga0187767_10377936All Organisms → cellular organisms → Bacteria → Acidobacteria506Open in IMG/M
3300018009|Ga0187884_10191107All Organisms → cellular organisms → Bacteria → Proteobacteria848Open in IMG/M
3300018034|Ga0187863_10576466All Organisms → cellular organisms → Bacteria → Acidobacteria632Open in IMG/M
3300018046|Ga0187851_10481941All Organisms → cellular organisms → Bacteria → Acidobacteria705Open in IMG/M
3300019785|Ga0182022_1218665All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales1794Open in IMG/M
3300019787|Ga0182031_1494139All Organisms → cellular organisms → Bacteria2406Open in IMG/M
3300019788|Ga0182028_1302310All Organisms → cellular organisms → Bacteria4068Open in IMG/M
3300019888|Ga0193751_1174512All Organisms → cellular organisms → Bacteria → Acidobacteria747Open in IMG/M
3300020581|Ga0210399_10491347All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales1021Open in IMG/M
3300020583|Ga0210401_11091082All Organisms → cellular organisms → Bacteria → Acidobacteria657Open in IMG/M
3300021170|Ga0210400_10329769All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1255Open in IMG/M
3300021171|Ga0210405_10089137All Organisms → cellular organisms → Bacteria → Proteobacteria2432Open in IMG/M
3300021403|Ga0210397_10256910All Organisms → cellular organisms → Bacteria1270Open in IMG/M
3300021432|Ga0210384_10530061All Organisms → cellular organisms → Bacteria1060Open in IMG/M
3300021559|Ga0210409_10778618All Organisms → cellular organisms → Bacteria829Open in IMG/M
3300022524|Ga0224534_1000466All Organisms → cellular organisms → Bacteria → Acidobacteria25939Open in IMG/M
3300022557|Ga0212123_10448491All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales851Open in IMG/M
3300023088|Ga0224555_1150941All Organisms → cellular organisms → Bacteria → Acidobacteria673Open in IMG/M
3300023091|Ga0224559_1061623All Organisms → cellular organisms → Bacteria1457Open in IMG/M
3300025928|Ga0207700_11563754All Organisms → cellular organisms → Bacteria → Acidobacteria584Open in IMG/M
3300025936|Ga0207670_10482624All Organisms → cellular organisms → Bacteria → Acidobacteria1004Open in IMG/M
3300026281|Ga0209863_10006585All Organisms → cellular organisms → Bacteria → Acidobacteria3849Open in IMG/M
3300026514|Ga0257168_1080407All Organisms → cellular organisms → Bacteria → Acidobacteria722Open in IMG/M
3300027846|Ga0209180_10361112All Organisms → cellular organisms → Bacteria → Acidobacteria827Open in IMG/M
3300027869|Ga0209579_10471694All Organisms → cellular organisms → Bacteria → Acidobacteria681Open in IMG/M
3300027908|Ga0209006_10540353All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetidae → Agaricales968Open in IMG/M
3300027911|Ga0209698_10173979All Organisms → cellular organisms → Bacteria1754Open in IMG/M
3300028746|Ga0302233_10374128All Organisms → cellular organisms → Bacteria → Acidobacteria539Open in IMG/M
3300028780|Ga0302225_10075057All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales1662Open in IMG/M
3300028873|Ga0302197_10206028All Organisms → cellular organisms → Bacteria → Acidobacteria916Open in IMG/M
3300029636|Ga0222749_10310072All Organisms → cellular organisms → Bacteria818Open in IMG/M
3300029883|Ga0311327_10764741All Organisms → cellular organisms → Bacteria → Acidobacteria566Open in IMG/M
3300029911|Ga0311361_10946515All Organisms → cellular organisms → Bacteria → Acidobacteria731Open in IMG/M
3300029914|Ga0311359_10664134All Organisms → cellular organisms → Bacteria755Open in IMG/M
3300029939|Ga0311328_11037351All Organisms → cellular organisms → Bacteria → Acidobacteria532Open in IMG/M
3300029952|Ga0311346_10964350All Organisms → cellular organisms → Bacteria → Acidobacteria693Open in IMG/M
3300029954|Ga0311331_10393368All Organisms → cellular organisms → Bacteria → Proteobacteria1411Open in IMG/M
3300029955|Ga0311342_10454205All Organisms → cellular organisms → Bacteria → Acidobacteria1090Open in IMG/M
3300029990|Ga0311336_10948420All Organisms → cellular organisms → Bacteria → Acidobacteria746Open in IMG/M
3300030011|Ga0302270_10715111All Organisms → cellular organisms → Bacteria → Acidobacteria506Open in IMG/M
3300030114|Ga0311333_11374721All Organisms → cellular organisms → Bacteria → Acidobacteria607Open in IMG/M
3300030706|Ga0310039_10262352All Organisms → cellular organisms → Bacteria → Acidobacteria663Open in IMG/M
3300030760|Ga0265762_1113848All Organisms → cellular organisms → Bacteria → Acidobacteria612Open in IMG/M
3300030916|Ga0075386_11714786All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales539Open in IMG/M
3300031231|Ga0170824_124768256All Organisms → cellular organisms → Bacteria → Acidobacteria604Open in IMG/M
3300031232|Ga0302323_101287200All Organisms → cellular organisms → Bacteria → Acidobacteria819Open in IMG/M
3300031232|Ga0302323_103251418All Organisms → cellular organisms → Bacteria → Acidobacteria518Open in IMG/M
3300031525|Ga0302326_13368432All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales535Open in IMG/M
3300031708|Ga0310686_106384264All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter → Candidatus Solibacter usitatus904Open in IMG/M
3300031788|Ga0302319_11003661All Organisms → cellular organisms → Bacteria795Open in IMG/M
3300031788|Ga0302319_11116366All Organisms → cellular organisms → Bacteria → Acidobacteria738Open in IMG/M
3300031902|Ga0302322_102326433All Organisms → cellular organisms → Bacteria → Acidobacteria660Open in IMG/M
3300031962|Ga0307479_11920025All Organisms → cellular organisms → Bacteria → Acidobacteria542Open in IMG/M
3300032008|Ga0318562_10584053All Organisms → cellular organisms → Bacteria → Acidobacteria646Open in IMG/M
3300032156|Ga0315295_12057222All Organisms → cellular organisms → Bacteria → Acidobacteria535Open in IMG/M
3300032160|Ga0311301_10566272All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales1654Open in IMG/M
3300032160|Ga0311301_11537305All Organisms → cellular organisms → Bacteria816Open in IMG/M
3300032770|Ga0335085_10069267All Organisms → cellular organisms → Bacteria4674Open in IMG/M
3300032782|Ga0335082_11525776All Organisms → cellular organisms → Bacteria → Acidobacteria540Open in IMG/M
3300032805|Ga0335078_12516059All Organisms → cellular organisms → Bacteria → Acidobacteria531Open in IMG/M
3300032828|Ga0335080_11382462All Organisms → cellular organisms → Bacteria → Acidobacteria700Open in IMG/M
3300032828|Ga0335080_11924944All Organisms → cellular organisms → Bacteria → Acidobacteria574Open in IMG/M
3300032955|Ga0335076_10272917All Organisms → cellular organisms → Bacteria1583Open in IMG/M
3300033982|Ga0371487_0457709All Organisms → cellular organisms → Bacteria → Acidobacteria542Open in IMG/M
3300034268|Ga0372943_0893066All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales591Open in IMG/M


 ⦗Top⦘

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil9.92%
BogEnvironmental → Terrestrial → Peat → Unclassified → Unclassified → Bog9.09%
Vadose Zone SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil5.79%
Peatlands SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil4.96%
SoilEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Soil4.96%
BogEnvironmental → Aquatic → Freshwater → Wetlands → Bog → Bog4.13%
FenEnvironmental → Terrestrial → Soil → Wetlands → Permafrost → Fen4.13%
Prmafrost SoilEnvironmental → Terrestrial → Soil → Wetlands → Permafrost → Prmafrost Soil4.13%
FenEnvironmental → Terrestrial → Peat → Unclassified → Unclassified → Fen4.13%
PeatlandEnvironmental → Aquatic → Freshwater → Wetlands → Bog → Peatland3.31%
WatershedsEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds3.31%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil3.31%
BogEnvironmental → Terrestrial → Soil → Wetlands → Permafrost → Bog3.31%
Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil3.31%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere2.48%
SoilEnvironmental → Terrestrial → Peat → Unclassified → Unclassified → Soil2.48%
PalsaEnvironmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa2.48%
PeatlandEnvironmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland1.65%
Surface SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil1.65%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil1.65%
SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Soil1.65%
Switchgrass RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere1.65%
Avena Fatua RhizosphereHost-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere1.65%
SedimentEnvironmental → Aquatic → Freshwater → Lake → Sediment → Sediment0.83%
Bog Forest SoilEnvironmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil0.83%
Freshwater SedimentEnvironmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment0.83%
Iron-Sulfur Acid SpringEnvironmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring0.83%
Glacier Forefield SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil0.83%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Soil0.83%
Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil0.83%
Hardwood Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil0.83%
Tropical PeatlandEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland0.83%
PalsaEnvironmental → Terrestrial → Soil → Wetlands → Permafrost → Palsa0.83%
PermafrostEnvironmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost0.83%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil0.83%
Peat SoilEnvironmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil0.83%
Arabidopsis RhizosphereHost-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere0.83%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere0.83%
Corn RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere0.83%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere0.83%
Avena Fatua RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere0.83%

Visualization
Powered by ApexCharts



Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
3300001867Texas A ecozone_OM1H0_M2 (Combined assembly for Texas A ecozone Site metagenome samples, ASSEMBLY_DATE=20130705)EnvironmentalOpen in IMG/M
3300004080Coassembly of ECP04_OM1, ECP04_OM2, ECP04_OM3EnvironmentalOpen in IMG/M
3300005166Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_123EnvironmentalOpen in IMG/M
3300005332Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)EnvironmentalOpen in IMG/M
3300005340Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaGEnvironmentalOpen in IMG/M
3300005436Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaGEnvironmentalOpen in IMG/M
3300005541Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen05_05102014_R1EnvironmentalOpen in IMG/M
3300005602Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2EnvironmentalOpen in IMG/M
3300005921Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6EnvironmentalOpen in IMG/M
3300005993Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 1 DNA2013-046EnvironmentalOpen in IMG/M
3300006028Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaGEnvironmentalOpen in IMG/M
3300006059Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2012EnvironmentalOpen in IMG/M
3300006102Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2013EnvironmentalOpen in IMG/M
3300007258Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_3EnvironmentalOpen in IMG/M
3300009012Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159EnvironmentalOpen in IMG/M
3300009029Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Permafrost soil replicate 1 DNA2013-189EnvironmentalOpen in IMG/M
3300009088Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaGEnvironmentalOpen in IMG/M
3300009137Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158EnvironmentalOpen in IMG/M
3300009400Soil microbial community of the Robinson Ridge, Antarctica. Combined Assembly of Gp0139162, Gp0138857, Gp0138858EnvironmentalOpen in IMG/M
3300009521Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_9_AC metaGEnvironmentalOpen in IMG/M
3300009553Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaGHost-AssociatedOpen in IMG/M
3300009623Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_19_10EnvironmentalOpen in IMG/M
3300009635Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_11_10EnvironmentalOpen in IMG/M
3300010379Sb_50d combined assemblyEnvironmentalOpen in IMG/M
3300011120Combined assembly of Microbial Forest Soil metaTEnvironmentalOpen in IMG/M
3300012211Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_40_16 metaGEnvironmentalOpen in IMG/M
3300012212Combined assembly of Hopland grassland soilHost-AssociatedOpen in IMG/M
3300012285Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_20_16 metaGEnvironmentalOpen in IMG/M
3300012361Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaGEnvironmentalOpen in IMG/M
3300012362Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaGEnvironmentalOpen in IMG/M
3300012469Combined assembly of Soil carbon rhizosphereHost-AssociatedOpen in IMG/M
3300013104Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaGHost-AssociatedOpen in IMG/M
3300014151Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin23_60_metaGEnvironmentalOpen in IMG/M
3300014158Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin02_60_metaGEnvironmentalOpen in IMG/M
3300014489Permafrost microbial communities from Stordalen Mire, Sweden - 812P2M metaGEnvironmentalOpen in IMG/M
3300014493Permafrost microbial communities from Stordalen Mire, Sweden - 712S2M metaGEnvironmentalOpen in IMG/M
3300014498Permafrost microbial communities from Stordalen Mire, Sweden - 812E2M metaGEnvironmentalOpen in IMG/M
3300014501Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (Illumina Assembly)EnvironmentalOpen in IMG/M
3300014502Permafrost microbial communities from Stordalen Mire, Sweden - 612E3M metaG (Illumina Assembly)EnvironmentalOpen in IMG/M
3300014654Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin06_10_metaGEnvironmentalOpen in IMG/M
3300014655Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin01_10_metaGEnvironmentalOpen in IMG/M
3300014657Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin05_10_metaGEnvironmentalOpen in IMG/M
3300014745Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5-5 metaGHost-AssociatedOpen in IMG/M
3300014838Permafrost microbial communities from Stordalen Mire, Sweden - 812S3M metaG (Illumina Assembly)EnvironmentalOpen in IMG/M
3300015195Arctic soil microbial communities from a glacier forefield, Storglaci?ren, Tarfala, Sweden (Sample st-6c, vegetation/snow interface)EnvironmentalOpen in IMG/M
3300015371Combined assembly of cpr5 and col0 rhizosphere and soilHost-AssociatedOpen in IMG/M
3300017934Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_3EnvironmentalOpen in IMG/M
3300017948Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_4_10EnvironmentalOpen in IMG/M
3300017999Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP10_10_MGEnvironmentalOpen in IMG/M
3300018009Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_20_40EnvironmentalOpen in IMG/M
3300018034Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_11_10EnvironmentalOpen in IMG/M
3300018046Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_6_10EnvironmentalOpen in IMG/M
3300019785Permafrost microbial communities from Stordalen Mire, Sweden - 612E3M metaG (PacBio error correction)EnvironmentalOpen in IMG/M
3300019787Permafrost microbial communities from Stordalen Mire, Sweden - 812S3M metaG (PacBio error correction)EnvironmentalOpen in IMG/M
3300019788Permafrost microbial communities from Stordalen Mire, Sweden - 712E1D metaG (PacBio error correction)EnvironmentalOpen in IMG/M
3300019888Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L1c2EnvironmentalOpen in IMG/M
3300020581Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-MEnvironmentalOpen in IMG/M
3300020583Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-MEnvironmentalOpen in IMG/M
3300021170Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-MEnvironmentalOpen in IMG/M
3300021171Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-MEnvironmentalOpen in IMG/M
3300021403Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-OEnvironmentalOpen in IMG/M
3300021432Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-MEnvironmentalOpen in IMG/M
3300021559Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-MEnvironmentalOpen in IMG/M
3300022524Peat soil microbial communities from Stordalen Mire, Sweden - 717 E1 20-24EnvironmentalOpen in IMG/M
3300022557Paint Pots_combined assemblyEnvironmentalOpen in IMG/M
3300023088Peat soil microbial communities from Stordalen Mire, Sweden - 717 S2 30-34EnvironmentalOpen in IMG/M
3300023091Peat soil microbial communities from Stordalen Mire, Sweden - 717 S3 30-34EnvironmentalOpen in IMG/M
3300025928Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025936Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes)EnvironmentalOpen in IMG/M
3300026281Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 1 DNA2013-046 (SPAdes)EnvironmentalOpen in IMG/M
3300026514Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DL-13-BEnvironmentalOpen in IMG/M
3300027846Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300027869Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen03_05102014_R1 (SPAdes)EnvironmentalOpen in IMG/M
3300027908Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O2 (SPAdes)EnvironmentalOpen in IMG/M
3300027911Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2012 (SPAdes)EnvironmentalOpen in IMG/M
3300028746Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_N3_1EnvironmentalOpen in IMG/M
3300028780Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_E3_2EnvironmentalOpen in IMG/M
3300028873Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Bog_N2_1EnvironmentalOpen in IMG/M
3300029636Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300029883I_Bog_E2 coassemblyEnvironmentalOpen in IMG/M
3300029911III_Bog_N2 coassemblyEnvironmentalOpen in IMG/M
3300029914III_Bog_E2 coassemblyEnvironmentalOpen in IMG/M
3300029939I_Bog_E3 coassemblyEnvironmentalOpen in IMG/M
3300029952II_Bog_N3 coassemblyEnvironmentalOpen in IMG/M
3300029954I_Bog_N3 coassemblyEnvironmentalOpen in IMG/M
3300029955II_Bog_E2 coassemblyEnvironmentalOpen in IMG/M
3300029990I_Fen_N2 coassemblyEnvironmentalOpen in IMG/M
3300030011Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Bog_E2_3EnvironmentalOpen in IMG/M
3300030114I_Fen_E2 coassemblyEnvironmentalOpen in IMG/M
3300030706Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_6_BS metaG (v2)EnvironmentalOpen in IMG/M
3300030760Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZI4 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300030916Forest soil microbial communities from France for metatranscriptomics studies - Site 11 - Champenoux / Amance forest - FA12 EcM (Eukaryote Community Metatranscriptome)EnvironmentalOpen in IMG/M
3300031231Coassembly Site 11 (all samples) - Champenoux / Amance forestEnvironmentalOpen in IMG/M
3300031232Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Fen_T0_3EnvironmentalOpen in IMG/M
3300031525Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_3EnvironmentalOpen in IMG/M
3300031708FICUS49499 Metagenome Czech Republic combined assemblyEnvironmentalOpen in IMG/M
3300031788Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Bog_T0_2EnvironmentalOpen in IMG/M
3300031902Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Fen_T0_2EnvironmentalOpen in IMG/M
3300031962Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515EnvironmentalOpen in IMG/M
3300032008Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f18EnvironmentalOpen in IMG/M
3300032156Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G14_0EnvironmentalOpen in IMG/M
3300032160Sb_50d combined assembly (MetaSPAdes)EnvironmentalOpen in IMG/M
3300032770Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.5EnvironmentalOpen in IMG/M
3300032782Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.1EnvironmentalOpen in IMG/M
3300032805Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.2EnvironmentalOpen in IMG/M
3300032828Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.4EnvironmentalOpen in IMG/M
3300032955Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.5EnvironmentalOpen in IMG/M
3300033982Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB22AY SIP fractionEnvironmentalOpen in IMG/M
3300034268Forest soil microbial communities from Eldorado National Forest, California, USA - SNFC_MG_FRD_1.2EnvironmentalOpen in IMG/M

Geographical Distribution
Zoom:     Powered by OpenStreetMap


 ⦗Top⦘

Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
JGI12627J18819_1048694623300001867Forest SoilPHVRKWKWRMWADHGVEFFIHPAMQAKPMVGFPEFFRQDREGLPRGVIQIVRSGS*
Ga0062385_1080077723300004080Bog Forest SoilKRKWRMWVDHGVEFFIHPAMQASATVGFPEFFRQDRNGVPRGVIQVVRSESS*
Ga0066674_1037197123300005166SoilMWADHGVEFFIHPAMQASPEMGFPEFFRQDRDGQPRGVIQVVKAARL*
Ga0066388_10654306513300005332Tropical Forest SoilMWTDHGVEFFIHPAMQATAEEGFPEFFRHDRDGRTRGVIRVIPSDKS*
Ga0070689_10095024613300005340Switchgrass RhizosphereDHGVEFFIHPAMKASPEMGFPEFFRQDRDGQPRGVIQVVRAEKL*
Ga0070713_10136275613300005436Corn, Switchgrass And Miscanthus RhizosphereHGVEFFIHPAMQASPEMSFPEFFRQDRDGQPRGVIQVVRAARR*
Ga0070733_1029952113300005541Surface SoilIRYGVEFFIHPAMQAAPDTGFPSFFRQDREGRPRGVVRVIEAGGA*
Ga0070762_1071781033300005602SoilKWKWRMWADHGVEFFIHPAMQARPAVGFPEFFRQDRDGVPRGVIQVIRSESS*
Ga0070766_1056617213300005921SoilPAMQASAAVGFPEFFRQDRNGVPRGVIQVVRSESS*
Ga0080027_1003118833300005993Prmafrost SoilMWVDHGVEFFIHPAMLAKADLTFPQFFRQDRDGQPRGVIRVVKAERA*
Ga0080027_1037784323300005993Prmafrost SoilELVWAPNVRKWKWRMWVDCGVEFFVHPAMQATPELTFPAFFHRDRDGHPRGMIQVVQG*
Ga0070717_1003574783300006028Corn, Switchgrass And Miscanthus RhizosphereMRASTIALKWKWRMWADHGVEFFIHPVMLASPSVSFPQFFRQDRDGRRRGVIQVIETGRT
Ga0075017_10021312213300006059WatershedsRKWKWRMWSDYGVEFFIHPAMQATPELGFPEFFRQDRDGQPRGLIRVVKAERA*
Ga0075017_10125863323300006059WatershedsMEVRMWADHGVEFFIHPAMQASPEMGFPEFFRQDRDGQPRGVIQVVKVARS*
Ga0075015_10042659813300006102WatershedsGVEFFIHPAMQATPELGFPEFFRQDRDGQPRGVIQVIKAEKS*
Ga0099793_1067958713300007258Vadose Zone SoilVDHGVEFFIHPAMLAKPTLGFPEFFRQDREGLPRGVIQVVRSGSS*
Ga0066710_10069453033300009012Grasslands SoilMWADHGVEFFIHPAMQARSEMGFPEFFRQDREGQARGVIQG
Ga0066793_1002547733300009029Prmafrost SoilMWADHGVEFFIHPAMQASPEMGFPEFFRKDRDGQPRGVIQVVKAARS*
Ga0066793_1021752733300009029Prmafrost SoilMWAAYGVEFYIHPAMQASPEIGFPEFFRQNRDGQPRGVIQVVKAVRP*
Ga0099830_1031211333300009088Vadose Zone SoilVPTVQKWKWRMWVEHGVEFFIHPAMLARPDVGFPQFFRHDRDGQPRGVIQVIKAGRS*
Ga0066709_10047892923300009137Grasslands SoilMWADHGLEFFIHPAMQASPEMGFPEFFRQDRDGRPRGVIQVVKAGQS*
Ga0116854_100588133300009400SoilMWADYGLEFFIHPAMSASAGMAFPDFFRQDREGRPRGVIQIEGAADD*
Ga0116222_100120083300009521Peatlands SoilMWVDHGVEFFIHPAMLAKADLAFPQFFRQDRDGQPRGVIRVVKVERA*
Ga0105249_1087067233300009553Switchgrass RhizosphereMLADHGVEFFIHPAMLAKPAVGFPQFFRQDREGLPRGVIQVVRSES*
Ga0116133_114338923300009623PeatlandVEFFIHPAMQASPEMGFPEFFRQDREGQPRGVIQVVKAARR*
Ga0116117_106625533300009635PeatlandIHPAMQARQAVGFPEFFRQDREGLPRGVIQVVGSESS*
Ga0136449_10408626713300010379Peatlands SoilPTMKASPEMGFPEFFRQDRDGQPRGVIQVVKAARP*
Ga0136449_10453309613300010379Peatlands SoilHGVEFFIHPAMQATPESGFPEFFRQDRDGQPRGVIQVVKAERS*
Ga0150983_1071633723300011120Forest SoilFFIHPAMQASPEMGFPEFFRQDRDGQPRGVIQVVKTVRS*
Ga0150983_1306839013300011120Forest SoilDHGVEFFIHPAMQAKPMVGFPEFFRQDREGLPRGVIQIVRSGS*
Ga0137377_1116642723300012211Vadose Zone SoilVDHGVEFFIHPVMQARATIGFPEFFRQDRDGVPRGVIQVVRSESS*
Ga0150985_10275180413300012212Avena Fatua RhizosphereRKWRMWADHGVEFFIHPAMRAKPAVGVPEFFRQGREGLARGVSQGVRSES*
Ga0150985_11157956133300012212Avena Fatua RhizosphereWKWRMWADHGVEFFIHPAMQAKPAVGFPEFFRQDREGLPRGVIQVVRSES*
Ga0137370_1013434333300012285Vadose Zone SoilMWADHGVEFFIHPAMQASPEMGFPECFRQDRDGQPRGAIQVVKAARL*
Ga0137360_1145094113300012361Vadose Zone SoilKWKWRMWADHGLEFFIHPAMQASPEMGFPEFFRRDQDGQPRGVIRVVKAGRS*
Ga0137361_1164327723300012362Vadose Zone SoilVRKRKWRMWVDHGVEFFIHPAMQASATVGFPEFFRQDRNGVPRGVIQVVRSESS*
Ga0150984_10337498013300012469Avena Fatua RhizosphereELALAPIVRKWKWRMWSDHGVEFFIHPAMQATPELGFPEFFRQNRDGQPRGLIQVVKAENS*
Ga0157370_1190742413300013104Corn RhizosphereEFFVHPAMEAGPSLGFPEFFRRDREGRPRGLIRVIRTAS*
Ga0181539_128853723300014151BogAEHGVEFFIHPAMQATPDLGFPEFFRQDRDGQPRGVIRVIKAEES*
Ga0181521_1023444233300014158BogRMWADYGVEFFIHPAMQATLELGFPEFFRQDRDGQPRGVIQVVKAARP*
Ga0182018_1049827213300014489PalsaVPHVRKWKWRMWADHGVEFFIHPAMQASPEMGFPEFFRQDRDGQPRGVIQVVKAARP*
Ga0182016_1023881913300014493BogVEFFNHPAMWASVTVGFPEFSRRGRDGVPRGVIQVVRSESS*
Ga0182019_1083228423300014498FenYGVEFFIHPAMQAPPEVGFPEFFRQDRDGQPRGVIQVVKAARP*
Ga0182024_1050456513300014501PermafrostLVRNWKWRMWSDYGVEFFIHPAMRATPELGFPEFFRQDRDGQPRGVIQVVKAGKS*
Ga0182021_1157650113300014502FenHPAMQASPEMGFPEFFRQDRDGQPRGVIQVVKAARP*
Ga0182021_1221157513300014502FenPAMQASPEAGFPEFFRQDREGHPRGVIHVVKAGQS*
Ga0181525_1049917933300014654BogDYGLEFFIHPAMQATPELGFPEFFRQDRNGQPRGVIQVVKG*
Ga0181516_1031201723300014655BogMWADHGVEFFIHPAMQANPEMGFPEFFRQDREGQPRGVIQVVKAARR*
Ga0181522_1087530323300014657BogFIHPAMQANPEMGFPEFFRQDRDGQPRGVIQVVKAVRP*
Ga0157377_1136154123300014745Miscanthus RhizosphereKWKWRMWKDYGVEFFIHPAMQATPELGFPEFFRQDRDGQSRGVIQVVKAEKS*
Ga0182030_1010018643300014838BogLVPLVRKWKWRKWSEYEVEFFIHPAMQTTPELGFPEFFRQDRDGQPRGVIQVVKAGKS*
Ga0182030_1031904313300014838BogHGVEFFIHPAMQASAEMGFPDFFRQDRDGLPRGVIQVLKVARP*
Ga0167658_100001833300015195Glacier Forefield SoilMILIPYLRKRKWRMWADHGVEFFIHPAMQAGAEISFPQFFRQDRDGVPRGVIQVVKATRS
Ga0132258_1113490923300015371Arabidopsis RhizosphereMWADHGVEFFIHPPMQPTEDEGFPEFFRHDRAGRRRGVIRVIKSDER*
Ga0187803_1016097513300017934Freshwater SedimentWVDHGVEFFVHPAMQAAPELGFPEFFRRDRDGRPRGIIRLVKVQET
Ga0187847_1061891713300017948PeatlandHVRKWKWRMWADYGVEFFIHPTMQASPEMGFPEFFRQDRDGQPRGVIQVVKAARP
Ga0187767_1037793613300017999Tropical PeatlandMWSDYGVEFFIHPAMRATPQMGFPEFFRQDRDGQPRGVIQVVKVARS
Ga0187884_1019110733300018009PeatlandPAMQATPELGFPEFFRQDRDGQPRGVIQVVKAVRA
Ga0187863_1057646623300018034PeatlandHPAMQASPEMGFPEFFRQDREGQPRGVIQVVKAARR
Ga0187851_1048194113300018046PeatlandLVLVPLVQKWKWRMWADYGVEFYIHPAMQARPEMGFPEFFRQDRDGQPRGVIQVVKAARP
Ga0182022_121866533300019785FenMWADYGVEFFIHPTMQASPEMGFPEFFRQDRDGQPRGMIQVTKAARP
Ga0182031_149413923300019787BogMWADHGVEFFIHPAMQASAEMGFPDFFRQDRDGQPRGVIQVVKVARP
Ga0182028_130231073300019788FenMWADHGVEFFIHPAMQATPELGFPEFFRQDRDGQPRGVIQVLKAVRA
Ga0193751_117451233300019888SoilILVPQVRKWKWRMWADHGVEFFIHPVMEARATVGFPEFFRQDRDGVPRGVIQVVRSESS
Ga0210399_1049134723300020581SoilMVFEFFIHPAMQASPEMGFPEFFRQDRDGQPRGVIQVVKTVRS
Ga0210401_1109108213300020583SoilRKWRMWVDHGVEFFIHPAMQARATVGFPEFFRRDRDGVPSEA
Ga0210400_1032976923300021170SoilMWADHGVEFFIHPAMQASPEMGFPEFFRQDREGQSRGVIQVVKARR
Ga0210405_1008913713300021171SoilVDHGVEFFIHPAMEARAMVGFPEFFRQDRDGVPRGVIQVVRS
Ga0210397_1025691013300021403SoilWADHGVEFFIHPAMLAKPAVGFPEFFRQDREGLPRGVVQVVRSES
Ga0210384_1053006133300021432SoilDHGVEFFIHPVMQASPEMGFPEFFRQDRDGQPRGVIQVVKTVRS
Ga0210409_1077861813300021559SoilPVLVPHAEEVGRMWVDYGVEFFVHPVMQASPEMDFPEFFSQDRDGQPRGVIQVVKAARS
Ga0224534_1000466163300022524SoilMWIDYGVEFFIHPAMPATPELGFPECFRQDGDGRPRGVIQVIKAGRS
Ga0212123_1044849133300022557Iron-Sulfur Acid SpringMSMATGLNRKWHMWADHGVEFFIHPAMQATAEEGFPEFFRHNRDGKARGVIRVIRPDKS
Ga0224555_115094113300023088SoilPVVRKWKWRMWGDYGVEFFIHPAMQATPEIGFPEFFRQDRSGEPRGVIQVVRAGRS
Ga0224559_106162313300023091SoilEFFIHPAMQASPEMDFPGFFRSDRDGQPRGVIQLIKAARS
Ga0207700_1156375423300025928Corn, Switchgrass And Miscanthus RhizosphereVDHGVEFFIHPAMEARATVGFPEFFRQDRDGVPRGVIQVIRSASS
Ga0207670_1048262413300025936Switchgrass RhizosphereDHGVEFFIHPAMKASPEMGFPEFFRQDRDGQPRGVIQVVRAEKL
Ga0209863_1000658533300026281Prmafrost SoilMWVDHGVEFFIHPAMLAKADLTFPQFFRQDRDGQPRGVIRVVKAERA
Ga0257168_108040723300026514SoilEMILVPHVRKRKWRMWVDHGVEFFIHPAMQASATVGFPEFFQQDRNGLPRGVIQVVRSES
Ga0209180_1036111213300027846Vadose Zone SoilKWRMWTDHGVEFFIHPAMLASPNMGFPQFFRQDRDGQPRGVIQVIETGRA
Ga0209579_1047169413300027869Surface SoilMWADHGVEFFIHPVMRAKPRVGFPEFFRQDREGVSRGVIQIVRSES
Ga0209006_1054035333300027908Forest SoilFFIHPAMQASQEMGFPEFFRQDREGQPRGVIQVVKAARR
Ga0209698_1017397913300027911WatershedsMWADHGVEFFIHPVMQAGPAVGFPEFFRRDREGMARGVIQVVRSESS
Ga0302233_1037412823300028746PalsaWKWRMWVDHGVEFFIHPAMQASATVGFPEFFRQDRNGVPKGVIQVVRSESS
Ga0302225_1007505743300028780PalsaRMWVDQGVEFFIHPAMQASATVGFPEFFRQDRNGVPKGVIQVVRSESS
Ga0302197_1020602833300028873BogMWADHGVEFFIHPAMQASAEMGFPDFFRQDRDGLPRGMIRVVKVARP
Ga0222749_1031007213300029636SoilMRKWRMWADHGIEFFIHPAMSASPEMGFPEFFRMDRDGNPRGVIQVVKSARS
Ga0311327_1076474123300029883BogMWAEHGVEFFIHPAMDAAPNIGFPEFFRMDRDGRPRGVIQIVKAKKR
Ga0311361_1094651523300029911BogLVPLVRKWKWRIWSEYEVEFFIHPAMQTTPELGFPEFFRQDRDGQPRGVIQVVKAGKS
Ga0311359_1066413433300029914BogPAMDAAPNIGFPEFFRMDRDGRPRGVIQIVKAKKR
Ga0311328_1103735123300029939BogEFFIHPAMQASAEMGFPDFFRQDRDGLPRGMIRVVKVARP
Ga0311346_1096435023300029952BogRIWSEYEVEFFIHPAMQTTPELGFPEFFRQDRDGQPRGVIQVVKAGKS
Ga0311331_1039336833300029954BogPAMQASAEMGVPDFFRQDRDGLPRGMIRVVKVARP
Ga0311342_1045420533300029955BogMWADHGVEFFIHPAMQATPELGFPEFFRQDRDGQPRGVIQVVKAVRA
Ga0311336_1094842023300029990FenHVRKWRWRMWADYGVEFFIHQTMQASPEMGFPEFFRQDRDGQPRGVIQVVKAARP
Ga0302270_1071511113300030011BogADHGVEFFIHPAMQASAEMGFPDFFRQDRDGQPRGVIQVVKVARP
Ga0311333_1137472113300030114FenVPLVRKWKWRMWSDHGVEFFIHPAMQATPELGFPEFFRQDRDGQPRGLIQVVKAEKS
Ga0310039_1026235223300030706Peatlands SoilLVRKWKWRMWADYGVEFYIHPAMQASPEMGFPEFFRQDRDGQPRGVIQVVRTARP
Ga0265762_111384813300030760SoilRKWKWRMWGDYGVEFFIHPAMQATPEMGFPEFFRQDRDGEPRGVIQVLRAGRS
Ga0075386_1171478613300030916SoilMFLVPRTRKWKWRMWSDHGVEFFVHPAMQATPESGFPEFFRQDRDGQPRGVIQVVKAEKS
Ga0170824_12476825613300031231Forest SoilFIHPAMQATPELGFPEFFRQDRDGQPRGVIQGVKAGKS
Ga0302323_10128720033300031232FenDHGVEFFIHPAMQASPEVGFPEFFRQDRDGQSRGVIQVVKAARP
Ga0302323_10325141823300031232FenKWKWRMWSDHGVEFFIHPAMQATPNLGFPEFFRQDRDGQPRGVIQVVKAVRA
Ga0302326_1336843213300031525PalsaMILVPQVQKWKWRMWVDHGVEFFVHPAMQARPAVGFPEFFRQDRDGVPR
Ga0310686_10638426433300031708SoilWRMWVDHGVEFFIHPAMQARATVGFPEFFRQGRNGMPRGVIQVVRSEAS
Ga0302319_1100366113300031788BogPLVRKWKWRMWSDHGVEFFIHPAMQATPDLGFPEFFRQDRDGQPRGLIQVVKAEKS
Ga0302319_1111636633300031788BogWTDYGVEFFIHPAMQATPELGFPEFFRQDRDGQPRGVIQVVKAVRA
Ga0302322_10232643323300031902FenPAMQASTAMGFPDFFRQDRDGQPRGVIQVVKVARS
Ga0307479_1192002513300031962Hardwood Forest SoilPHVRKRKWRMWADHGVEFFIHPAMQARAMVGFPGFFRQDRDGVPRGVIQVVRSESS
Ga0318562_1058405323300032008SoilVLVPLVRKWKWRMWNDHGVEFFIHPAMRATPELGFPEFFRQDRDGQLRGLIQVVKAE
Ga0315295_1205722213300032156SedimentFIHPAMQASPEMGFPEFFRQDRDGQPRGVIRVVRTSRS
Ga0311301_1056627223300032160Peatlands SoilMWADHGVEFFIHPAMLATADLAFPQFFRQDRDGQPRGVIRVVKAEQSM
Ga0311301_1153730513300032160Peatlands SoilDHGVEFFIHPAMLATADLAFPQFFRQDRDGQPRGVIRVVKAE
Ga0335085_1006926713300032770SoilIHPTMRATPELGFPEFFRQDRDGQPRGLIQVVKVKKS
Ga0335082_1152577613300032782SoilRKWKWRMWAEHGVEFFIHPAMQASPEMGFPEFFRQDREGQPRGVIQVMKARR
Ga0335078_1251605913300032805SoilWRMWLDYGVEFFIHPAMQASPQTGFPEFFRRDRDGQPRGIIQVV
Ga0335080_1138246233300032828SoilVEFFIHPAMQATPELGFPEFFRQDRDGQPRGLIQVVKAEIS
Ga0335080_1192494423300032828SoilRMWADHGVEFFIHPAMQASPEMGFPEFFRQDREGQPRGVIQVVKAARR
Ga0335076_1027291713300032955SoilEFFIHPAMQATPELGFPEFFRQDRDGQPRGLIQVVKAEIS
Ga0371487_0457709_49_1923300033982Peat SoilMWADYGVEFFIHPTMQASPEMGFPEFFRQDRDGQTRGVIQVAKAARP
Ga0372943_0893066_127_2703300034268SoilMWSEHGVEFFIHPVMQASPELGFPEFFRQDRDGQPRGLIQVVKAEKL

 ⦗Top⦘


Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.