NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F071776

Metagenome / Metatranscriptome Family F071776

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F071776
Family Type Metagenome / Metatranscriptome
Number of Sequences 122
Average Sequence Length 71 residues
Representative Sequence VSVARTSGGPGLRPRYRLRRVLAEAASVTLGVVLLIWSLMPVYNMLLIALDPDEGDIEFEGIIWPPDPSL
Number of Associated Samples 107
Number of Associated Scaffolds 122

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 96.69 %
% of genes near scaffold ends (potentially truncated) 96.72 %
% of genes from short scaffolds (< 2000 bps) 90.16 %
Associated GOLD sequencing projects 103
AlphaFold2 3D model prediction Yes
3D model pTM-score0.47

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Bacteria (99.180 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil
(14.754 % of family members)
Environment Ontology (ENVO) Unclassified
(22.951 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
(46.721 % of family members)


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Multiple Sequence Alignments

Select alignment to view:      

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Transmembrane (alpha-helical) Signal Peptide: No Secondary Structure distribution: α-helix: 40.82%    β-sheet: 0.00%    Coil/Unstructured: 59.18%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  		pTM-score: 0.47
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 122 Family Scaffolds
PF00528BPD_transp_1 84.43
PF13561adh_short_C2 0.82
PF13416SBP_bac_8 0.82
PF07592DDE_Tnp_ISAZ013 0.82
PF02609Exonuc_VII_S 0.82

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 122 Family Scaffolds
COG1722Exonuclease VII small subunitReplication, recombination and repair [L] 0.82

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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
All OrganismsrootAll Organisms99.18 %
UnclassifiedrootN/A0.82 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300001431|F14TB_100189758All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium777Open in IMG/M
3300002558|JGI25385J37094_10001170All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae8160Open in IMG/M
3300004009|Ga0055437_10334093All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia508Open in IMG/M
3300004157|Ga0062590_101924286All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria611Open in IMG/M
3300004267|Ga0066396_10035812All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria744Open in IMG/M
3300004633|Ga0066395_10064401All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1667Open in IMG/M
3300005171|Ga0066677_10238600All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1029Open in IMG/M
3300005172|Ga0066683_10490851All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria750Open in IMG/M
3300005176|Ga0066679_10136518All Organisms → cellular organisms → Bacteria1525Open in IMG/M
3300005178|Ga0066688_10989925All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria513Open in IMG/M
3300005332|Ga0066388_101447497All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1197Open in IMG/M
3300005332|Ga0066388_105488364All Organisms → cellular organisms → Bacteria642Open in IMG/M
3300005332|Ga0066388_106199456All Organisms → cellular organisms → Bacteria → Proteobacteria604Open in IMG/M
3300005336|Ga0070680_100209736All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1643Open in IMG/M
3300005363|Ga0008090_10244735All Organisms → cellular organisms → Bacteria → Proteobacteria1062Open in IMG/M
3300005435|Ga0070714_101042957All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria796Open in IMG/M
3300005467|Ga0070706_101659212All Organisms → cellular organisms → Bacteria582Open in IMG/M
3300005468|Ga0070707_100701955All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria974Open in IMG/M
3300005471|Ga0070698_100800540All Organisms → cellular organisms → Bacteria → Proteobacteria886Open in IMG/M
3300005536|Ga0070697_102054117All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria512Open in IMG/M
3300005545|Ga0070695_101661211All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria534Open in IMG/M
3300005574|Ga0066694_10581708All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria522Open in IMG/M
3300005586|Ga0066691_10828887All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria545Open in IMG/M
3300005617|Ga0068859_101430758All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria763Open in IMG/M
3300005713|Ga0066905_100076595All Organisms → cellular organisms → Bacteria2178Open in IMG/M
3300005878|Ga0075297_1004007All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD00171239Open in IMG/M
3300006032|Ga0066696_11003219All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria531Open in IMG/M
3300006796|Ga0066665_10501291All Organisms → cellular organisms → Bacteria994Open in IMG/M
3300006796|Ga0066665_11026162All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria631Open in IMG/M
3300006844|Ga0075428_101778992All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria642Open in IMG/M
3300006846|Ga0075430_101451816All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0017564Open in IMG/M
3300006854|Ga0075425_100870923All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1030Open in IMG/M
3300006969|Ga0075419_10211906All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1285Open in IMG/M
3300009012|Ga0066710_101070378All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales1246Open in IMG/M
3300009038|Ga0099829_10325206All Organisms → cellular organisms → Bacteria1263Open in IMG/M
3300009038|Ga0099829_10544179All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales965Open in IMG/M
3300009089|Ga0099828_10202508All Organisms → cellular organisms → Bacteria1772Open in IMG/M
3300009089|Ga0099828_10775088All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria859Open in IMG/M
3300009090|Ga0099827_11239828All Organisms → cellular organisms → Bacteria → Proteobacteria649Open in IMG/M
3300009094|Ga0111539_10603875All Organisms → cellular organisms → Bacteria1278Open in IMG/M
3300009143|Ga0099792_10116762All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium1427Open in IMG/M
3300009157|Ga0105092_10642628All Organisms → cellular organisms → Bacteria614Open in IMG/M
3300009176|Ga0105242_13230139All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium506Open in IMG/M
3300009177|Ga0105248_13367159All Organisms → cellular organisms → Bacteria508Open in IMG/M
3300010046|Ga0126384_11083043All Organisms → cellular organisms → Bacteria734Open in IMG/M
3300010047|Ga0126382_10476713All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria996Open in IMG/M
3300010047|Ga0126382_10654016All Organisms → cellular organisms → Bacteria874Open in IMG/M
3300010303|Ga0134082_10094237All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1181Open in IMG/M
3300010358|Ga0126370_10454836All Organisms → cellular organisms → Bacteria1069Open in IMG/M
3300010360|Ga0126372_10586535All Organisms → cellular organisms → Bacteria1066Open in IMG/M
3300010360|Ga0126372_12645818All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium553Open in IMG/M
3300010361|Ga0126378_13028668All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria535Open in IMG/M
3300010362|Ga0126377_11348499All Organisms → cellular organisms → Bacteria786Open in IMG/M
3300010362|Ga0126377_12688235All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria573Open in IMG/M
3300010362|Ga0126377_13365366All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium517Open in IMG/M
3300010366|Ga0126379_12694138All Organisms → cellular organisms → Bacteria594Open in IMG/M
3300010376|Ga0126381_103283220All Organisms → cellular organisms → Bacteria638Open in IMG/M
3300010398|Ga0126383_10483126All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales1294Open in IMG/M
3300011269|Ga0137392_10496333All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria1014Open in IMG/M
3300012198|Ga0137364_10258068All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales1289Open in IMG/M
3300012203|Ga0137399_11489555All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales564Open in IMG/M
3300012206|Ga0137380_10241055All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales1632Open in IMG/M
3300012354|Ga0137366_11155064All Organisms → cellular organisms → Bacteria529Open in IMG/M
3300012359|Ga0137385_10695512All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales849Open in IMG/M
3300012361|Ga0137360_10316008All Organisms → cellular organisms → Bacteria1300Open in IMG/M
3300012363|Ga0137390_10213137All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales1918Open in IMG/M
3300012532|Ga0137373_10898382All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales650Open in IMG/M
3300012918|Ga0137396_10549598All Organisms → cellular organisms → Bacteria855Open in IMG/M
3300012927|Ga0137416_10962504All Organisms → cellular organisms → Bacteria761Open in IMG/M
3300015358|Ga0134089_10291735All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales675Open in IMG/M
3300015372|Ga0132256_101373224All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales818Open in IMG/M
3300015372|Ga0132256_102787833All Organisms → cellular organisms → Bacteria587Open in IMG/M
3300015373|Ga0132257_101113888All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales997Open in IMG/M
3300015374|Ga0132255_105765215All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales524Open in IMG/M
3300016294|Ga0182041_12278804All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales507Open in IMG/M
3300016319|Ga0182033_11843828All Organisms → cellular organisms → Bacteria549Open in IMG/M
3300016357|Ga0182032_12066402All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Rhodopila500Open in IMG/M
3300016387|Ga0182040_10069511All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Rhodopila2276Open in IMG/M
3300016387|Ga0182040_10961628All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales711Open in IMG/M
3300017930|Ga0187825_10036697All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Rhodopila1655Open in IMG/M
3300017936|Ga0187821_10014970All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Rhodopila2679Open in IMG/M
3300018433|Ga0066667_10183891All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Rhodopila1517Open in IMG/M
3300018433|Ga0066667_11699220All Organisms → cellular organisms → Bacteria566Open in IMG/M
3300018468|Ga0066662_12389949All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Rhodopila556Open in IMG/M
3300018482|Ga0066669_10728685All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales874Open in IMG/M
3300021560|Ga0126371_12315761All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Rhodopila649Open in IMG/M
3300021560|Ga0126371_12600438All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Rhodopila613Open in IMG/M
3300025917|Ga0207660_10052308All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Rhodopila2907Open in IMG/M
3300025922|Ga0207646_11272738All Organisms → cellular organisms → Bacteria643Open in IMG/M
3300026088|Ga0207641_10040432All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Rhodopila3905Open in IMG/M
3300026328|Ga0209802_1114145All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Rhodopila1196Open in IMG/M
3300026334|Ga0209377_1178563All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales746Open in IMG/M
3300026334|Ga0209377_1308180All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Rhodopila528Open in IMG/M
3300026497|Ga0257164_1009957All Organisms → cellular organisms → Bacteria1197Open in IMG/M
3300026552|Ga0209577_10685850All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Rhodopila582Open in IMG/M
3300027846|Ga0209180_10248328All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Rhodopila1024Open in IMG/M
(restricted) 3300031150|Ga0255311_1019340All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Rhodopila1399Open in IMG/M
3300031573|Ga0310915_10057798All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Rhodopila2525Open in IMG/M
3300031682|Ga0318560_10061180All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1878Open in IMG/M
3300031716|Ga0310813_11234161All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales689Open in IMG/M
3300031740|Ga0307468_100525012All Organisms → cellular organisms → Bacteria946Open in IMG/M
3300031747|Ga0318502_10655282All Organisms → cellular organisms → Bacteria → Proteobacteria634Open in IMG/M
3300031771|Ga0318546_10469959All Organisms → cellular organisms → Bacteria → Proteobacteria881Open in IMG/M
3300031793|Ga0318548_10063786All Organisms → cellular organisms → Bacteria → Proteobacteria1712Open in IMG/M
3300031805|Ga0318497_10841755All Organisms → cellular organisms → Bacteria → Proteobacteria514Open in IMG/M
3300031820|Ga0307473_10087900All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Rhodopila1615Open in IMG/M
3300031893|Ga0318536_10541948All Organisms → cellular organisms → Bacteria583Open in IMG/M
3300031912|Ga0306921_10217665All Organisms → cellular organisms → Bacteria → Proteobacteria2238Open in IMG/M
3300031941|Ga0310912_11066180All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales618Open in IMG/M
3300031942|Ga0310916_11278286All Organisms → cellular organisms → Bacteria → Proteobacteria604Open in IMG/M
3300031954|Ga0306926_10270687All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria2104Open in IMG/M
3300032001|Ga0306922_11500865All Organisms → cellular organisms → Bacteria674Open in IMG/M
3300032010|Ga0318569_10356614All Organisms → cellular organisms → Bacteria → Proteobacteria681Open in IMG/M
3300032055|Ga0318575_10055270All Organisms → cellular organisms → Bacteria1831Open in IMG/M
3300032205|Ga0307472_100070779All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Rhodopila2275Open in IMG/M
3300032261|Ga0306920_102651355All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales686Open in IMG/M
3300032261|Ga0306920_103203465All Organisms → cellular organisms → Bacteria612Open in IMG/M
3300032805|Ga0335078_11470637All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales764Open in IMG/M
3300033486|Ga0316624_10260582All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales1383Open in IMG/M
3300034660|Ga0314781_000086All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Rhodopila4622Open in IMG/M
3300034820|Ga0373959_0171775All Organisms → cellular organisms → Bacteria559Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).


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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
Vadose Zone SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil14.75%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil12.30%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Soil9.84%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil9.84%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil8.20%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil4.92%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil4.92%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere4.92%
Populus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere4.10%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil2.46%
Hardwood Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil2.46%
Freshwater SedimentEnvironmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment1.64%
SoilEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Soil1.64%
SoilEnvironmental → Terrestrial → Soil → Loam → Grasslands → Soil1.64%
Corn RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere1.64%
Arabidopsis RhizosphereHost-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere1.64%
Switchgrass RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere1.64%
Arabidopsis RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere1.64%
Freshwater SedimentEnvironmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment0.82%
Natural And Restored WetlandsEnvironmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands0.82%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil0.82%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil0.82%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural → Soil0.82%
Rice Paddy SoilEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Rice Paddy Soil0.82%
Agricultural SoilEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil0.82%
Sandy SoilEnvironmental → Terrestrial → Soil → Sand → Unclassified → Sandy Soil0.82%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere0.82%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere0.82%
Rhizosphere SoilHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere Soil0.82%
Tropical Rainforest SoilEnvironmental → Terrestrial → Soil → Unclassified → Tropical Rainforest → Tropical Rainforest Soil0.82%

Visualization
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Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Taxon OIDSample NameHabitat TypeIMG/M Link
3300001431Amended soil microbial communities from Kansas Great Prairies, USA - BrdU F1.4TB clc assemlyEnvironmentalOpen in IMG/M
3300002558Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_1_40cmEnvironmentalOpen in IMG/M
3300004009Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Browns_ThreeSqC_D2EnvironmentalOpen in IMG/M
3300004157Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - - Combined assembly of AARS Block 2EnvironmentalOpen in IMG/M
3300004267Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 6 MoBioEnvironmentalOpen in IMG/M
3300004633Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBioEnvironmentalOpen in IMG/M
3300005171Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_126EnvironmentalOpen in IMG/M
3300005172Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_132EnvironmentalOpen in IMG/M
3300005176Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_128EnvironmentalOpen in IMG/M
3300005178Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_137EnvironmentalOpen in IMG/M
3300005332Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)EnvironmentalOpen in IMG/M
3300005336Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaGEnvironmentalOpen in IMG/M
3300005363Tropical rainforest soil microbial communities from the Amazon Forest, Brazil, analyzing deforestation - Metatranscriptome F II A100 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300005435Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaGEnvironmentalOpen in IMG/M
3300005467Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaGEnvironmentalOpen in IMG/M
3300005468Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaGEnvironmentalOpen in IMG/M
3300005471Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaGEnvironmentalOpen in IMG/M
3300005536Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaGEnvironmentalOpen in IMG/M
3300005545Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaGEnvironmentalOpen in IMG/M
3300005574Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_143EnvironmentalOpen in IMG/M
3300005586Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_140EnvironmentalOpen in IMG/M
3300005617Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2Host-AssociatedOpen in IMG/M
3300005713Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)EnvironmentalOpen in IMG/M
3300005878Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_25C_80N_104EnvironmentalOpen in IMG/M
3300006032Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_145EnvironmentalOpen in IMG/M
3300006796Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114EnvironmentalOpen in IMG/M
3300006844Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2Host-AssociatedOpen in IMG/M
3300006846Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4Host-AssociatedOpen in IMG/M
3300006854Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4Host-AssociatedOpen in IMG/M
3300006969Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD3Host-AssociatedOpen in IMG/M
3300009012Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159EnvironmentalOpen in IMG/M
3300009038Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaGEnvironmentalOpen in IMG/M
3300009089Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaGEnvironmentalOpen in IMG/M
3300009090Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaGEnvironmentalOpen in IMG/M
3300009094Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)Host-AssociatedOpen in IMG/M
3300009143Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2EnvironmentalOpen in IMG/M
3300009157Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 19-21cm March2015EnvironmentalOpen in IMG/M
3300009176Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaGHost-AssociatedOpen in IMG/M
3300009177Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaGHost-AssociatedOpen in IMG/M
3300010046Tropical forest soil microbial communities from Panama - MetaG Plot_36EnvironmentalOpen in IMG/M
3300010047Tropical forest soil microbial communities from Panama - MetaG Plot_30EnvironmentalOpen in IMG/M
3300010303Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_09182015EnvironmentalOpen in IMG/M
3300010320Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_2_11112015EnvironmentalOpen in IMG/M
3300010358Tropical forest soil microbial communities from Panama - MetaG Plot_3EnvironmentalOpen in IMG/M
3300010360Tropical forest soil microbial communities from Panama - MetaG Plot_6EnvironmentalOpen in IMG/M
3300010361Tropical forest soil microbial communities from Panama - MetaG Plot_23EnvironmentalOpen in IMG/M
3300010362Tropical forest soil microbial communities from Panama - MetaG Plot_22EnvironmentalOpen in IMG/M
3300010366Tropical forest soil microbial communities from Panama - MetaG Plot_24EnvironmentalOpen in IMG/M
3300010376Tropical forest soil microbial communities from Panama - MetaG Plot_28EnvironmentalOpen in IMG/M
3300010398Tropical forest soil microbial communities from Panama - MetaG Plot_35EnvironmentalOpen in IMG/M
3300011269Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4A metaGEnvironmentalOpen in IMG/M
3300012198Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_20_16 metaGEnvironmentalOpen in IMG/M
3300012203Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaGEnvironmentalOpen in IMG/M
3300012206Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_100_16 metaGEnvironmentalOpen in IMG/M
3300012354Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_60_16 metaGEnvironmentalOpen in IMG/M
3300012359Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_80_16 metaGEnvironmentalOpen in IMG/M
3300012361Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaGEnvironmentalOpen in IMG/M
3300012363Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4A metaGEnvironmentalOpen in IMG/M
3300012532Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_80_16 metaGEnvironmentalOpen in IMG/M
3300012918Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czcobulk3.16 metaGEnvironmentalOpen in IMG/M
3300012927Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300015358Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_40cm_5_24_1 metaGEnvironmentalOpen in IMG/M
3300015372Soil combined assemblyHost-AssociatedOpen in IMG/M
3300015373Combined assembly of cpr5 rhizosphereHost-AssociatedOpen in IMG/M
3300015374Col-0 rhizosphere combined assemblyHost-AssociatedOpen in IMG/M
3300016294Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178EnvironmentalOpen in IMG/M
3300016319Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00HEnvironmentalOpen in IMG/M
3300016357Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000EnvironmentalOpen in IMG/M
3300016387Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176EnvironmentalOpen in IMG/M
3300017930Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SourceSoil_5EnvironmentalOpen in IMG/M
3300017936Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SourceSoil_1EnvironmentalOpen in IMG/M
3300018433Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116EnvironmentalOpen in IMG/M
3300018468Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111EnvironmentalOpen in IMG/M
3300018482Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_118EnvironmentalOpen in IMG/M
3300021560Tropical forest soil microbial communities from Panama - MetaG Plot_4EnvironmentalOpen in IMG/M
3300025917Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025922Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300026088Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300026328Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_129 (SPAdes)EnvironmentalOpen in IMG/M
3300026334Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_141 (SPAdes)EnvironmentalOpen in IMG/M
3300026497Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - CO-08-BEnvironmentalOpen in IMG/M
3300026552Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109 (SPAdes)EnvironmentalOpen in IMG/M
3300027846Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300031150 (restricted)Sandy soil microbial communities from University of British Columbia, Vancouver, Canada - EtOH4_T0_E4EnvironmentalOpen in IMG/M
3300031573Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111EnvironmentalOpen in IMG/M
3300031682Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f22EnvironmentalOpen in IMG/M
3300031716Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YN3EnvironmentalOpen in IMG/M
3300031740Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05EnvironmentalOpen in IMG/M
3300031747Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f22EnvironmentalOpen in IMG/M
3300031771Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f19EnvironmentalOpen in IMG/M
3300031793Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f21EnvironmentalOpen in IMG/M
3300031805Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f23EnvironmentalOpen in IMG/M
3300031820Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_515EnvironmentalOpen in IMG/M
3300031893Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f28EnvironmentalOpen in IMG/M
3300031912Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)EnvironmentalOpen in IMG/M
3300031941Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX080EnvironmentalOpen in IMG/M
3300031942Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF176EnvironmentalOpen in IMG/M
3300031954Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)EnvironmentalOpen in IMG/M
3300032001Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)EnvironmentalOpen in IMG/M
3300032010Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f22EnvironmentalOpen in IMG/M
3300032055Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f23EnvironmentalOpen in IMG/M
3300032205Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05EnvironmentalOpen in IMG/M
3300032261Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)EnvironmentalOpen in IMG/M
3300032805Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.2EnvironmentalOpen in IMG/M
3300033486Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_N3_C1_D5_AEnvironmentalOpen in IMG/M
3300034660Metatranscriptome of lab incibated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60R2 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300034820Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_N_2Host-AssociatedOpen in IMG/M

Geographical Distribution
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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID Sample Taxon ID Habitat Sequence
F14TB_10018975813300001431SoilVSVIRTSGGPVLRPRYRLRRVLAEATSVTLGIVLLIWSLAPVYNMLLIALDPEDGEIEFEGIIWPPDPTLKSFHAVLTQGYWLLEDFW
JGI25385J37094_1000117093300002558Grasslands SoilVSRRRVLVELASLTLGALLLVWSLTPVYNMLLIALDRDEGDIEFAGQIWPPDPSLHSFYTVLTQGYW
Ga0055437_1033409313300004009Natural And Restored WetlandsVSVARPCAGPVLRQPHRRRVLADVASGILVVVLLIWSLTPVYNMLLIALDRDEGDTEFEGIIWPPDPSLHSF
Ga0062590_10192428623300004157SoilVSVARSFGSPVLRPRHRLRRFLAEVASVILGVALLIWSLAPVYNMLLVALDRDEGDIEFEGLIWPPDPSLHSFQ
Ga0066396_1003581213300004267Tropical Forest SoilMRQLPRRLRRLLTDVASGILGIVLLVWSLVPVYNMLLIALDRDEGDIEFEGLIWPPDPSLHSFQT
Ga0066395_1006440133300004633Tropical Forest SoilVRAPRGPVRRPRRRLRRLLTDVASGILGIVLLVWSLVPVYNMLLIALDRDEGDIEFEGLIWPPDPSLHSFQTVLTQGYWLV
Ga0066677_1023860023300005171SoilVSLARVSGGSVLRTRSRLRRVLIEVSSLVLVVALLVWSLTPVYNMLLIALDPDEGDIEFEGIIWPPNPSLHSFHAVVTQGYWLVEDF
Ga0066683_1049085123300005172SoilVRDPRASGGPGRRWRIVTDAASGALAIALLVWSLLPVYNMLLIALDPDEGDIEFEGVLWPPEPSLHSFQTVVTQRYWLVEDFWH
Ga0066679_1013651813300005176SoilVSRRRVLVELASLTLGALLLVWSLTPVYNMLLIALDRDEGDIEFAGQIWPPDPSLHSFYTVLTQG
Ga0066688_1098992523300005178SoilVKGCLPLRAFSTHVRRRSRASVARTSSRPVLRPRYRLRRVLAEAASVTLGVVLLIWSLTPVYNMLLIALDPEEGDIEFEGIIWPPDPSL
Ga0066388_10144749713300005332Tropical Forest SoilVSVRRALVEVASVALALVILIWSLTPVYNMLLIALDPDEGDIEFEGILWPPEPSLASFHT
Ga0066388_10548836423300005332Tropical Forest SoilVASGILGIVLLVWSLVPVYNMLLIALDRDEGDIEFEGLIWPPDPSLHSFQTVLTQGYWLVED
Ga0066388_10619945613300005332Tropical Forest SoilVSIAPSFRRRARWPRYRMQLVLTEAASAIIGLVLLVWSLLPVYNMVLIALDPEGDNEFAGYIWPPDPSLESFWVVVTQGYW
Ga0070680_10020973633300005336Corn RhizosphereMSVTHAAGRPRRRVRQRLGRVLVETGSAMLGIGLLIWSLVPVYNMLLIALDRDEGDIEFEGILWPPDPSLHSFAA
Ga0008090_1024473523300005363Tropical Rainforest SoilMSVAAFGRPARWRRYRVRRILTEAASAALGVVLLVWSLLPVYNMLLIALDPEGDNEFAGYIWPPDPSL
Ga0070714_10104295723300005435Agricultural SoilVSVALGSRVPARRPRYRLRRRLTEAASLGLGAVLLIWWLLPIYNMVLIAIDPNGATEFAGDIW
Ga0070706_10165921223300005467Corn, Switchgrass And Miscanthus RhizosphereVSVARTSGEPVLRSSSRLRRGLVEAASVILVVALLIWSLMPVYNMLLIALDPDEGDIEFEGILWPPNPS
Ga0070707_10070195523300005468Corn, Switchgrass And Miscanthus RhizosphereVLRSGSRLRRGLVEAASLILVVALLIWSLTPVYNMLLIALDPDEGDIEFEGILWPPNPSLHSFHAV
Ga0070698_10080054023300005471Corn, Switchgrass And Miscanthus RhizosphereMSVAAFGRPARRRRYRVRRILTEAASAVLGVVLLVWSLLPVYNMLLIALDPEGDNEFAGYIWPPDPSLE
Ga0070697_10205411713300005536Corn, Switchgrass And Miscanthus RhizosphereMSVRSRSLLRRVVVEVASVLLVVALLIWSLTPVYNMLLIALDPDEGDIEFEGLIWPADPS
Ga0070695_10166121113300005545Corn, Switchgrass And Miscanthus RhizosphereVRRVGVEVASVALGIVILIWSLMPVYNMLLIALDADEGDIEFEGIIWPPEPSLHSFHAVVTQSYWLVED
Ga0066694_1058170823300005574SoilVSVTRVSDGPLLRLRPWLRRVVAEVASVTLAVALLIWSLTPVYNMLLIALDRDEGDIEFEGIIWPADPSLHSFHTVLTQGYWLVE
Ga0066691_1082888723300005586SoilVSVARTSGGPGLRPRYRLRRVLAEAASVTLGVVLLIWSLMPVYNMLLIALDPDEGDIEFEGIIWPPDPSL
Ga0068859_10143075823300005617Switchgrass RhizosphereVSVTRTSGLPLLRPRHRLRRFLAEVGSVILGVALLIWSLAPVYNMLLIALDRDEGDIEFEGLIWPPDPSLHSFQ
Ga0066905_10007659513300005713Tropical Forest SoilVSLARTSGERARRPRYRLRQALGEVASVILVVVLLIWSLTPVYNMLLIALDRDEGDIEFEGNIWPPDPSLHSF
Ga0075297_100400723300005878Rice Paddy SoilVKGAGGRDGAGLRRRLRRVLAEVASAALGVALLIWSLVPVYNMLLIALDRDEGDIEFEGLLWPPDPS
Ga0066696_1100321923300006032SoilVSVARASGGPVLHSGSRLRRGLVEAASVILVVALLIWSLVPVYNMLLIALDPDEGDIEFEGILWPPNPSLHSFRAV
Ga0066665_1050129113300006796SoilVSRRRVLIELASLTLGALLLVWSLTPVYNMLLIALDRDEGDIEFAGQIWPPDPSLHSFYTVLTQ
Ga0066665_1102616223300006796SoilVLRSGSRLRRGLVEAASLILVVALLIWSLTPVYNMLLIALDPDEGDIEFEGILWPPNPSL
Ga0075428_10177899223300006844Populus RhizosphereVRGALTSAAAIRRPHARLRRALVEAASIALVVVLLVWSLTPVYNMLLIALDPDEGDIEFEGVVWPPDPSLHSFH
Ga0075430_10145181623300006846Populus RhizosphereVKGEDALRRRSRASIARTSGAPVLRPRYRLRRVLTAAASAALGVVLLIWSLTPVYNMLLIALDPDEGDIEFEGIIWP
Ga0075425_10087092323300006854Populus RhizosphereVSLARAAVVSTRRPRSRLRRAVVEIASVLLVVALLIWSLAPVYNMLLIALDPDDGDIEFEGNLWPPE
Ga0075419_1021190613300006969Populus RhizosphereVKGEDALRRRSRASIARTSGAPVLRPRYRLRRVLAAAASAALGVVLLIWSLTPVYNMLLIALDPDEGNIEFEGIIWPPDPSLHSFYGV
Ga0066710_10107037823300009012Grasslands SoilVSVAPSFGWPARWPRYRVRRFLTEAASAVLGVVLLVWSLLPVYNMLLIALDPEGDNEFAGYIWPPDPSLES
Ga0099829_1032520613300009038Vadose Zone SoilVEVASVLLVVVLLIWSLTPVYNMLLIALDPDEGGIEFEGLIWPADPSLHSFHTVLTQGY
Ga0099829_1054417913300009038Vadose Zone SoilVSVAPSFGRPARRRRYRLRRVLAEAASAVLGVALLVWSLMPVYNMLLIALDPDQGDIEFEGIIWPPDPSLHSF
Ga0099828_1020250833300009089Vadose Zone SoilVSVTRTSGGRVLRPRYRLRRVLAEAASVTLGVVLLLWSLAPVYNMLLIALDPEDGEIEFEGIIWPPDPTLKSFHAVLTQGYW
Ga0099828_1077508813300009089Vadose Zone SoilVRRKLAEVASVILGLALVIWSLTPVYNMLLIALDRDEGDIEFEGIVWPPDPSLHSFYTVLTQGYWLVED
Ga0099827_1123982813300009090Vadose Zone SoilVSVAPSFGRPARRRRYRLRRVLNEAASVILGVVLLVWSLMPVYNMLLIALDPEGDNEFAGYIWPPDP
Ga0111539_1060387513300009094Populus RhizosphereVKGEDALRRRSRASVARTSGGPVLRPRYRLRRVLTEAASVALGVVLLIWSLTPVYNMLLIALDPDEGDIEFEGIIWPPDPSLHSFYAVLTQGYWLVEHF
Ga0099792_1011676213300009143Vadose Zone SoilMSSGPVLRLRYRLRRVLAEVASVTLGVVLLVWSLAPVYNMLLIALDREEGDIEFEGIIWPPDPSL
Ga0105092_1064262813300009157Freshwater SedimentVASVILGLALLIWSLAPVYNMLLIALDRDEGDIEFEGLIWPPDPSLHSFQAVLTQG
Ga0105242_1323013923300009176Miscanthus RhizosphereVASVILGVALLIWSLAPVYNLLLVALDRDEGDIEFEGLIWPPDPSLHSFQVVLTQGYWLV
Ga0105248_1336715923300009177Switchgrass RhizosphereVSVARPFGGPVLRPRYRTRRVLAEVASVALGVVLLIWSLTPVYNMLLIALDRDEGDIEFEGLIWPPDPSLH
Ga0126384_1108304323300010046Tropical Forest SoilVRRPRRRVRRILTDVASGILGIVLLVWSLVPVYNMLLIALDRDEGDIEFEGLIWPPDPSLHSFQTVLTQG
Ga0126382_1047671313300010047Tropical Forest SoilVSRRRVLVELASLTLGALLLVWSLTPVYNMLLIALDRDEGDIEFAGIIWPPDPSLHSFYTVLTQGYWLVEDFW
Ga0126382_1065401613300010047Tropical Forest SoilVSLVRTVVARRRGSASRVRGALTEAASVALALAILIWSLTPVYNMLLIALDPDEGDIEFEGILWPPDPSLHILHTVLPPSYSLVAHF*
Ga0134082_1009423723300010303Grasslands SoilVSVARASGGPVLHSGSRLRRGLVEAASVILVVALLIWSLMPVYNMLLIALDPDEGDIEFEGILWPPNPSLHSFRAVVTQGYWLVE
Ga0134109_1000488853300010320Grasslands SoilVTRPRPAGGKRWLRRLFLESASAALALALLVWSLTPVYNMLLTALDRDEGDIEFAGILWPPEPSLH
Ga0126370_1045483623300010358Tropical Forest SoilVSGVFTAGGSIRRPRGRLRRLVVEAASVALVVVLLIWSLIPVYNMLLIALDPDEGDIEFEGVVWPSEPSLHSFHTVLTQGYW
Ga0126372_1058653523300010360Tropical Forest SoilVRAPRGPLRRPRRRVRQILTDVASGILGIVLLVWSLVPVYNMLLIALDRDEGDIEFEGLIWPPDPS
Ga0126372_1264581813300010360Tropical Forest SoilVRQALGEVASVILVVVLLIWSLTPVYNMLLISLDPDEGDIEFEGNIWPPDPSLHSFYTVLCQGYW
Ga0126378_1302866813300010361Tropical Forest SoilVSRRRVLVELASLTLGVLLLVWSLTPVYNMLLIALDRDEGDIEFEGNIWPPDPSLHSFYT
Ga0126377_1134849913300010362Tropical Forest SoilVSLVRTVVARRRGSGARVRWALTEAASVALALAILIWSLTPVYNMLLIALDPDEGDIEFEGILWPPDPSLHSFHTVLTQSYWLLADF
Ga0126377_1268823523300010362Tropical Forest SoilVRAVHPRVRPRRALVEALSVMLALALLVWSLVPVYNMLLIALDPDEGDIEFEGLIWPRDPSLHSF
Ga0126377_1336536623300010362Tropical Forest SoilVKGEDALRRRSRASAARTSGRPVPRPSYWLRRVLVEAASVTLGVVLLIWSLTPVYNMLLIALDPEEGGIEFEGIIWPPDPSLNSFYAVVTQGYWLLE
Ga0126379_1269413813300010366Tropical Forest SoilMRRPRYRRRRVLAAAASVTLAVVLLLWSLTPVYNMLLIALDPDQGDIEFEGNIWPPD
Ga0126381_10328322023300010376Tropical Forest SoilVRRPRRRVRRILTDVASGILGIVLLVWSLVPVYNMLLIALDRDEGDIEFEGLIWPPDPSLHSFQ
Ga0126383_1048312633300010398Tropical Forest SoilVSATPASVRPIRRPRARLRRVLVELASAALVVVLLIWSLTPVYNMLLIALDPDEGDIEFEGVIWPPDA
Ga0137392_1049633313300011269Vadose Zone SoilVRRKLAEVASVILGLALVIWSLTPVYNMLLIALDRDEGDIEFEGIVWPPDPSLH
Ga0137364_1025806833300012198Vadose Zone SoilVSRRRELVELASLTLGALLLVWSLTPVYNMLLIALDPDDGDIEFEGVIWPRDPSLHSFY
Ga0137399_1148955513300012203Vadose Zone SoilVEVASVLLVIALLIWSLTPVYNMLLIALDPDEGDIEFEGLIWPADPSLHSFHTVLTQGYWLVEDF
Ga0137380_1024105513300012206Vadose Zone SoilVSRRRVLVELASLTLGALLLVWSLTPVYNMLLIALDRDEGDIEFQGIIWPPDPSL
Ga0137366_1115506423300012354Vadose Zone SoilVSVARTSGGPVLRPRYGLRRVLADVASGTLGVVLLIWSLTPVYNMLLIALDRDDGDIEFEGIIWPPDPSLHSFYTVL
Ga0137385_1069551223300012359Vadose Zone SoilVLRPRYRLRRVLAEAASVTLGVVLLIWSLAPVYNMLLIALDPDEGDIEFEGIIWPPDPSLNSFHAVLTQGYWLVE
Ga0137360_1031600823300012361Vadose Zone SoilVKGEDALRRRSRASVTRASGKPVLRPRYRLRRVLAEVASVTLGVVLLIWSLTPVYNMLLIALDRDEGDIEFAGMIWPVDP
Ga0137390_1021313713300012363Vadose Zone SoilVSVARTSGGPALRPRYRLRRVLAEVASVTLGLVLLIWSLTPVYNMLLIALDRDEGDIEFEGIIWPPDPSLHSFYTVLTQGYWL
Ga0137373_1089838213300012532Vadose Zone SoilVSVARTPGGPVFRPRYRLRRVLAEAASVTLGVVLLIWSLLPVYNMLLIALDPDEGDIEFEGIIWPP
Ga0137396_1054959813300012918Vadose Zone SoilVRRKVVEAGSGVVGAVLLIWSLTPVYNMLLIALDRDEGDIEFESIVWPRDPSLHSFYTV
Ga0137416_1096250413300012927Vadose Zone SoilVNGRVRWALTEASSAALALALLIWSLTPVYNMLLIALDRDEGDIEFEGILWPPDPSLHSFYTVLTQGH
Ga0134089_1029173513300015358Grasslands SoilVLGSGSRLRRGLVEAASLILVVALLIWSLTPVYNMLLIALDPDEGDIEFEGILWPPNPSLHSFRAVVTQGYWLVEDF
Ga0132256_10137322423300015372Arabidopsis RhizosphereVKIAREMASVILLAALIVWSLLPVYNMLLIALDPDEGDIEFEGIVWPPDPSLHSFHTVLTQGYWLVADVWRQFGN
Ga0132256_10278783323300015372Arabidopsis RhizosphereVRRRLAEAASGTLGVVLLIWSLAPVYNMLLIALDRDEGDIEFEGLIWPPDPSLHSFQTVLRQGYW
Ga0132257_10111388823300015373Arabidopsis RhizosphereVKIAREMASVILLAALIVWSLLPVYNMLLIALDPDEGDIEFEGIVWPPDPSLHSFHTVLTQGY
Ga0132255_10576521523300015374Arabidopsis RhizosphereVKIAREMASVILLAALIVWSLLPVYNMLLIALDPDEGDIEFEGIVWPPDPSLHSFHTVLTQGYW
Ga0182041_1227880423300016294SoilVSVALSFGRPARSQRYRVRRILTEAASAVLGVVLLVWSLLPVYNMLLIALDPEGDNEFAGYIWPPDPSLE
Ga0182033_1184382813300016319SoilVIALPFRLRYRLHRLLGAAASATLGVVLLIWSLIPCYNMLLIALDPEGDTEFAGYVWPPEPSL
Ga0182032_1206640213300016357SoilVRAPRGPMRRPPRRLRRILTDVASGILGIVLLVWSLVPVYNMLLIALDRDEGDIEFEGLIWPPDPSLHSFQTVLTQGYWLVED
Ga0182040_1006951133300016387SoilVRAPRGPMRRPPRRLRRILTDVASGILGIVLLVWSLVPVYNMLLIALDRDEGDIEFEGLIWPPDPSLHSFQTVLT
Ga0182040_1096162823300016387SoilVSLALPLRPASRPRYRLRRTVSTIASMLLGLVLLVWSLIPVYNMLLIALDPDGDTEFAGYIWPPDPSL
Ga0187825_1003669713300017930Freshwater SedimentVKRLLVEAGSVALGLVLLLWSLAPVYNMLLIALDRDEGDIEFEGLIWSPDPSLHSFHTVLTQGYWLVED
Ga0187821_1001497013300017936Freshwater SedimentVKRLLVEAGSVALALVLLIWSLAPVYNMLLIALDRDEGDIEFEGLIWPPDPSLHSFHT
Ga0066667_1018389133300018433Grasslands SoilVSVTRVSDGPVLRLRPWLRRVVAEVASVTLAVALLIWSLTPVYNMPLIALDGEEGDIEFEGIIWPADPSLHSFHTVLTQGYWIV
Ga0066667_1169922023300018433Grasslands SoilVSRRALTEAASVSLVVVLLIWSLTPVYSRLLIALDRDEGDHEFDALIWRPDPSR
Ga0066662_1238994923300018468Grasslands SoilVSVVRTSGGPVRRPRRQRRRVLAAAASVTLGVVLLIWSLTPVYNMLLIALDPDAGEIEFEGIIWPPDPSLNSFYTVVTQGYWLV
Ga0066669_1072868513300018482Grasslands SoilVSLARVSGGSVLRTRSRLRRVLIEVSSLVLVVALLVWSLTPVYNMLLIALDPDEGDIEFEGIIWPPNPSLHSFH
Ga0126371_1231576123300021560Tropical Forest SoilVRAPRGPVRRPRRRVRRILTDVASGILGIVLLVWSLVPVYNMLLIALDRDEGDIEFEGLIWPPDPSLH
Ga0126371_1260043813300021560Tropical Forest SoilVSVAGTSGERARRPRHRVRQALGEVASVILVVVLLIWSLTPVYNMLLIALDRDEGDIEFEGNIWPPDPSLHSFYTVLSQGYWLVEDFW
Ga0207660_1005230813300025917Corn RhizosphereMSVTHAAGRPRRRVRQRLGRVLVETGSAMLGIGLLIWSLVPVYNMLLIALDRDEGDIEFEGILWPPDPSLHSFAAVLTQGYW
Ga0207646_1127273823300025922Corn, Switchgrass And Miscanthus RhizosphereMSVAAFGWPARRRRYRVRRILTEAASAVLGVVLLVWSLLPVYNMLLIALDPEGDNEFAGYIWPPDPSLE
Ga0207641_1004043213300026088Switchgrass RhizosphereVSFTRAAGEPAFRSRSRLRRVVVEVASVMLVVALLIWSLTPVYNMLLIALDPDEGDIEFEGLIWPADPSLHSFHTVLTQGYWLLE
Ga0209802_111414523300026328SoilVSVTRVSDGPVLRLRPWLRRVVAEVASVTLAVALLIWSLTPVYNMLLIALDRDEGDIEFEGIIWPADPSLHSFHTVLTQEY
Ga0209377_117856313300026334SoilVSVARTSGEPVLRSSSRLRRGLVEAASVILVVALLIWSLTPVYNMLLIALDPDEGDIEFEGILWPPNPSLHSFHAVVTQGYW
Ga0209377_130818013300026334SoilVSVTRVSDGPVLRLRPWLRRVVAEVASVTLAVALLIWSLTPVYNMLLIALDRDEGDIEFEGIIWPADPSLH
Ga0257164_100995713300026497SoilVSVVRASGGPVLRSRYRLRRLLAEGASVILVVVLLIWSLTPVYNMLLIALDRDEGDIEFEGIIWPPD
Ga0209577_1068585013300026552SoilVSVTRVSDGPVLRLRPWLRRVVAEVASVTLAVALLIWSLTPVYNMLLIALDRDEGDIEFEGIIWPADPS
Ga0209180_1024832823300027846Vadose Zone SoilVSVRSRSRFRRVVVEVASVLLVVVLLIWSLTPVYNMLLIALDPDEGDIEFEGLIRPADPSLHSFHTVLTQGYWL
(restricted) Ga0255311_101934013300031150Sandy SoilVSLARTSGGPVLRPRYRLRRVFAEVASVTLGIVLLIWSLTPVYNMLLIALDRDEGDIEFEGIIWPPDPSLHSFYTV
Ga0310915_1005779813300031573SoilVRAPRGPMRRPPRRLRRILTDVASGILGIVLLVWSLVPVYNMLLIALDRDEGDIEFEGLIWPPDPSLHSFQT
Ga0318560_1006118013300031682SoilVSVALSFGRPARSQRYRVRRILTEAASAVLGVVLLVWSLLPVYNMLLIALDPEGDNEFAGYIWPP
Ga0310813_1123416123300031716SoilVSVARPFGGPVLRPRYRMRRVLAEVASVALGVVLLIWSLTPVYNMLLIALDRDEGDIEFEGLIWPPDPSLHSFRVVLTQGY
Ga0307468_10052501213300031740Hardwood Forest SoilVKGRARLRRVLVEAASVALVVVLLIWSLTPVYNMLLIALDADEGDIEFEGIVWPQEPSLHSFHTVLTQG
Ga0318502_1065528223300031747SoilMSVAAFGRPARRRRYRVRRILTEAASAVLGVVLLVWSLLPVYNMLLIALDPEGDNEFAGYIWPPDPS
Ga0318546_1046995923300031771SoilMSVAAFGRPARRRRYRVRRILTEAASAVLGVVLLVWSLLPVYNMLLIALDPEGDNEFAGYIWPPDPSLKS
Ga0318548_1006378633300031793SoilMSVAAFGRPARRRRYRVRRILTEAASAVLGVVLLVWSLLPVYNMLLIALDPEGDNEFAGYIWPP
Ga0318497_1084175523300031805SoilMSVAAFGRPARRRRYRVRRILTEAASAVLGVVLLVWSLLPVYNMLLIALDPEGDNEFAGYIWPPDP
Ga0307473_1008790033300031820Hardwood Forest SoilVEVASVMLVVALLVWSLTPVYNMLLIALDPDEGDIEFEGLIWPADPSLHSFHTVLTQGYWLVEDFW
Ga0318536_1054194813300031893SoilVSVAAFGRPARRRRYRARRILTEAASAVLGVVLLVWSLLPVYNMLLIALDPEGDNEFAG
Ga0306921_1021766543300031912SoilMSVAAFGRPARRRRYRVRRILTEAASAVLGVVLLVWSLLPVYNMLLIALDPEGDNEFAGYIWPPDPSLES
Ga0310912_1106618013300031941SoilVSIAPSFGGPARRPRYRMRGIFTEAASAMLGVVLLVWSLLPVYNMLLIALDPEGDNEFAGYIW
Ga0310916_1127828613300031942SoilVSVAAFGRPARRRRYRARRILTEAASAVLGVVLLVWSLLPVYNMLLIALDPEGDNEFAGYIWPP
Ga0306926_1027068733300031954SoilMRRILTEATSAVLGAVLLVWSLLPVYNMFLIALDPEGDNEFAGYIWPPDPSFGSFWVVVTQGYWY
Ga0306922_1150086523300032001SoilVKGEDRARACVSTHGRRHSRASVARTSGGPVLRPRYRLRRVLAEAASVTLGVVLLIWSLTPVYNMLLIALDPDEGDIEFAGIIWPPDPS
Ga0318569_1035661423300032010SoilMSVAAFGRPARRRRYRVRRILTEAASAVLGVVLLVWSLLPVYNMLLIALDPEGDNEFAGYIWPPGPSLES
Ga0318575_1005527013300032055SoilVSVALSFGRPARSQRYRVRRILTEAASAVLGVVLLVWSLLPVYNMLLIALDPEGDNEFAGYIW
Ga0307472_10007077943300032205Hardwood Forest SoilVSRRRVLVELASLTLGALLLVWSLTPVYNMLLIALDRDEGDIEFAGQIWPPDPSLHSFYTVLT
Ga0306920_10265135523300032261SoilVSLALPLRPASRPRYRLRRTVSTIASMLLGLVLLVWSLIPVYNMLLIALDPDGDTEFAGYIWPPDPSLESFAVVAGQGYWY
Ga0306920_10320346523300032261SoilVSVAASFCWPAHWPRYRMRQVLIEAASAVLGVVLLVWSLLPVYNMFLIALDPDGDNEFAGYIRPP
Ga0335078_1147063713300032805SoilMSAAAARPRQRPARRYRVRRAVVEAASAVLAAALLLWSLLPVYNMLLIALDPDEGETEFAWLIWPPEPSINSFRAV
Ga0316624_1026058213300033486SoilVSVLPCHRLRRLLAEVASVTLGIALLIWSLAPVYNMLLIALDRDEGDIEFEGLIWPPDPSLHSFHAVLTQ
Ga0314781_000086_4368_46223300034660SoilMSVTHAAGRPRRRVRERLGRVLVETGSAMLGIGLLIWSLVPVYNMLLIALDRDEGDIEFEGILWPPDPSLHSFAAVLTQGYWLVE
Ga0373959_0171775_2_2443300034820Rhizosphere SoilMSVTHAAGRPRRRVRQRLGRVLVETGSAMLGIGLLIWSLMPVYNMLLIALDRDEGDIEFEGILWPPDPSLHSFAAVLTQGY

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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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