NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F071463

Metagenome / Metatranscriptome Family F071463

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F071463
Family Type Metagenome / Metatranscriptome
Number of Sequences 122
Average Sequence Length 72 residues
Representative Sequence MPVSALKAMGADVEGALEHVNVPSYVIDHVGVVRWMNEAARRIVGDQVGRQFTSVVAPEETRRAREL
Number of Associated Samples 102
Number of Associated Scaffolds 122

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 65.22 %
% of genes near scaffold ends (potentially truncated) 91.80 %
% of genes from short scaffolds (< 2000 bps) 90.98 %
Associated GOLD sequencing projects 101
AlphaFold2 3D model prediction Yes
3D model pTM-score0.57

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Bacteria (90.164 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil
(13.115 % of family members)
Environment Ontology (ENVO) Unclassified
(26.230 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
(46.721 % of family members)


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Multiple Sequence Alignments

Select alignment to view:      

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 29.47%    β-sheet: 9.47%    Coil/Unstructured: 61.05%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  		pTM-score: 0.57
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 122 Family Scaffolds
PF04542Sigma70_r2 11.48
PF03631Virul_fac_BrkB 8.20
PF08281Sigma70_r4_2 4.10
PF00903Glyoxalase 2.46
PF00676E1_dh 2.46
PF08031BBE 2.46
PF03706LPG_synthase_TM 2.46
PF04960Glutaminase 1.64
PF00496SBP_bac_5 1.64
PF00230MIP 1.64
PF00294PfkB 0.82
PF00583Acetyltransf_1 0.82
PF06101Vps62 0.82
PF14019DUF4235 0.82
PF01546Peptidase_M20 0.82
PF00578AhpC-TSA 0.82
PF00118Cpn60_TCP1 0.82
PF00027cNMP_binding 0.82
PF16653Sacchrp_dh_C 0.82
PF13396PLDc_N 0.82
PF03473MOSC 0.82
PF03435Sacchrp_dh_NADP 0.82
PF04389Peptidase_M28 0.82
PF03476MOSC_N 0.82
PF12706Lactamase_B_2 0.82
PF00005ABC_tran 0.82
PF00877NLPC_P60 0.82
PF02683DsbD 0.82
PF13229Beta_helix 0.82
PF13424TPR_12 0.82
PF09994DUF2235 0.82
PF02687FtsX 0.82
PF02746MR_MLE_N 0.82
PF09851SHOCT 0.82
PF13188PAS_8 0.82
PF00112Peptidase_C1 0.82
PF03358FMN_red 0.82

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 122 Family Scaffolds
COG0568DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)Transcription [K] 11.48
COG1191DNA-directed RNA polymerase specialized sigma subunitTranscription [K] 11.48
COG1595DNA-directed RNA polymerase specialized sigma subunit, sigma24 familyTranscription [K] 11.48
COG4941Predicted RNA polymerase sigma factor, contains C-terminal TPR domainTranscription [K] 11.48
COG1295Uncharacterized membrane protein, BrkB/YihY/UPF0761 family (not an RNase)Function unknown [S] 8.20
COG0277FAD/FMN-containing lactate dehydrogenase/glycolate oxidaseEnergy production and conversion [C] 2.46
COG0392Predicted membrane flippase AglD2/YbhN, UPF0104 familyCell wall/membrane/envelope biogenesis [M] 2.46
COG05672-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, and related enzymesEnergy production and conversion [C] 2.46
COG1071TPP-dependent pyruvate or acetoin dehydrogenase subunit alphaEnergy production and conversion [C] 2.46
COG0580Glycerol uptake facilitator or related aquaporin (Major Intrinsic protein Family)Carbohydrate transport and metabolism [G] 1.64
COG2066GlutaminaseAmino acid transport and metabolism [E] 1.64
COG4948L-alanine-DL-glutamate epimerase or related enzyme of enolase superfamilyCell wall/membrane/envelope biogenesis [M] 1.64
COG0459Chaperonin GroEL (HSP60 family)Posttranslational modification, protein turnover, chaperones [O] 0.82
COG0791Cell wall-associated hydrolase, NlpC_P60 familyCell wall/membrane/envelope biogenesis [M] 0.82
COG3217N-hydroxylaminopurine reductase subunit YcbX, contains MOSC domainDefense mechanisms [V] 0.82

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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
All OrganismsrootAll Organisms90.16 %
UnclassifiedrootN/A9.84 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
2040502001|FACENC_GAMC6GA01AKCO0All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria509Open in IMG/M
2166559005|cont_contig91323All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria626Open in IMG/M
2170459019|G14TP7Y01C29NFNot Available698Open in IMG/M
2189573003|GZIR7W401CV35BAll Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria514Open in IMG/M
3300000364|INPhiseqgaiiFebDRAFT_101630860All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria558Open in IMG/M
3300000364|INPhiseqgaiiFebDRAFT_105836531All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria610Open in IMG/M
3300000597|AF_2010_repII_A1DRAFT_10120213All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium641Open in IMG/M
3300000956|JGI10216J12902_110278094All Organisms → cellular organisms → Bacteria734Open in IMG/M
3300002568|C688J35102_119834874All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria788Open in IMG/M
3300002568|C688J35102_120714462All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1404Open in IMG/M
3300004081|Ga0063454_101135824All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria641Open in IMG/M
3300004463|Ga0063356_102872907All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria742Open in IMG/M
3300004479|Ga0062595_101486272All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia624Open in IMG/M
3300004479|Ga0062595_102418020All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria521Open in IMG/M
3300004480|Ga0062592_100015117All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria3295Open in IMG/M
3300005164|Ga0066815_10053770All Organisms → cellular organisms → Bacteria671Open in IMG/M
3300005332|Ga0066388_102939595All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria871Open in IMG/M
3300005340|Ga0070689_101394146Not Available633Open in IMG/M
3300005363|Ga0008090_14232331All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Thermoleophilales → Thermoleophilaceae → unclassified Thermoleophilaceae → Thermoleophilaceae bacterium531Open in IMG/M
3300005366|Ga0070659_100786033All Organisms → cellular organisms → Bacteria827Open in IMG/M
3300005435|Ga0070714_102422548All Organisms → cellular organisms → Bacteria510Open in IMG/M
3300005439|Ga0070711_101371288All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia615Open in IMG/M
3300005455|Ga0070663_100920789All Organisms → cellular organisms → Bacteria756Open in IMG/M
3300005526|Ga0073909_10436746All Organisms → cellular organisms → Bacteria623Open in IMG/M
3300005526|Ga0073909_10655007All Organisms → cellular organisms → Bacteria523Open in IMG/M
3300005529|Ga0070741_11151641All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria657Open in IMG/M
3300005615|Ga0070702_101333037All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria584Open in IMG/M
3300005719|Ga0068861_102356926All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria535Open in IMG/M
3300005764|Ga0066903_100004706All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria11614Open in IMG/M
3300005764|Ga0066903_101293376All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1362Open in IMG/M
3300005764|Ga0066903_101931334All Organisms → cellular organisms → Bacteria1131Open in IMG/M
3300005764|Ga0066903_102498831All Organisms → cellular organisms → Bacteria → Terrabacteria group1000Open in IMG/M
3300005764|Ga0066903_103771375All Organisms → cellular organisms → Bacteria815Open in IMG/M
3300005764|Ga0066903_106038831All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae634Open in IMG/M
3300005764|Ga0066903_107425337All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria566Open in IMG/M
3300006046|Ga0066652_100154651All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1927Open in IMG/M
3300006175|Ga0070712_101953886All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium514Open in IMG/M
3300006755|Ga0079222_10017997All Organisms → cellular organisms → Bacteria2766Open in IMG/M
3300006852|Ga0075433_10624518All Organisms → cellular organisms → Bacteria945Open in IMG/M
3300006854|Ga0075425_102098241All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria631Open in IMG/M
3300007076|Ga0075435_101215441All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria659Open in IMG/M
3300009148|Ga0105243_13089620All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria504Open in IMG/M
3300009156|Ga0111538_13663864All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria532Open in IMG/M
3300009162|Ga0075423_11720525All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria675Open in IMG/M
3300009610|Ga0105340_1187404All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Phytohabitans → Phytohabitans rumicis866Open in IMG/M
3300010043|Ga0126380_10153063All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1480Open in IMG/M
3300010046|Ga0126384_10512251All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1036Open in IMG/M
3300010046|Ga0126384_10942325All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria782Open in IMG/M
3300010047|Ga0126382_12181658All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria532Open in IMG/M
3300010048|Ga0126373_11597434All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria717Open in IMG/M
3300010362|Ga0126377_10659083All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1096Open in IMG/M
3300010371|Ga0134125_12043544All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria623Open in IMG/M
3300010375|Ga0105239_13201085All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria533Open in IMG/M
3300010375|Ga0105239_13303911All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria525Open in IMG/M
3300010398|Ga0126383_10621372All Organisms → cellular organisms → Bacteria → Terrabacteria group1153Open in IMG/M
3300012390|Ga0134054_1258144All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria576Open in IMG/M
3300012507|Ga0157342_1001126All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia1886Open in IMG/M
3300012897|Ga0157285_10082294All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria853Open in IMG/M
3300012899|Ga0157299_10103876All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria739Open in IMG/M
3300012955|Ga0164298_10593052All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium759Open in IMG/M
3300012960|Ga0164301_10077798All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1824Open in IMG/M
3300012971|Ga0126369_11973831Not Available672Open in IMG/M
3300012971|Ga0126369_12522343All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria599Open in IMG/M
3300012984|Ga0164309_10422592All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1000Open in IMG/M
3300012985|Ga0164308_10671733All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium890Open in IMG/M
3300012985|Ga0164308_11550501All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria610Open in IMG/M
3300012989|Ga0164305_11696546All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria567Open in IMG/M
3300012989|Ga0164305_12003652All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria528Open in IMG/M
3300013105|Ga0157369_12194671All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria560Open in IMG/M
3300013296|Ga0157374_10389315All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1389Open in IMG/M
3300013296|Ga0157374_11180074All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria787Open in IMG/M
3300013296|Ga0157374_11678661All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria660Open in IMG/M
3300013307|Ga0157372_10831022All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1073Open in IMG/M
3300014969|Ga0157376_10396207All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1334Open in IMG/M
3300015201|Ga0173478_10141002All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria946Open in IMG/M
3300015371|Ga0132258_10425710All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria3304Open in IMG/M
3300015371|Ga0132258_13024524All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1165Open in IMG/M
3300015371|Ga0132258_13493638All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium1077Open in IMG/M
3300015372|Ga0132256_102581236All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria609Open in IMG/M
3300016341|Ga0182035_10325442All Organisms → cellular organisms → Bacteria1269Open in IMG/M
3300017792|Ga0163161_11164437All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria665Open in IMG/M
3300017947|Ga0187785_10803211All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria500Open in IMG/M
3300018060|Ga0187765_11221873All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria528Open in IMG/M
3300018067|Ga0184611_1314302All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria542Open in IMG/M
3300018469|Ga0190270_12834708All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium547Open in IMG/M
3300020081|Ga0206354_10501516All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria502Open in IMG/M
3300025911|Ga0207654_10834685All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria666Open in IMG/M
3300025927|Ga0207687_11942307All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria503Open in IMG/M
3300025931|Ga0207644_11724781All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria524Open in IMG/M
3300027907|Ga0207428_10884282All Organisms → cellular organisms → Bacteria → PVC group632Open in IMG/M
3300028712|Ga0307285_10090074Not Available803Open in IMG/M
3300028787|Ga0307323_10061915All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1326Open in IMG/M
3300028876|Ga0307286_10352902Not Available548Open in IMG/M
3300031199|Ga0307495_10220975All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria531Open in IMG/M
3300031226|Ga0307497_10623567All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria548Open in IMG/M
3300031564|Ga0318573_10288368All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria878Open in IMG/M
3300031770|Ga0318521_10865780All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria552Open in IMG/M
3300031805|Ga0318497_10235185All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1015Open in IMG/M
3300031846|Ga0318512_10410150All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria681Open in IMG/M
3300031860|Ga0318495_10171797All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria977Open in IMG/M
3300031896|Ga0318551_10372987All Organisms → cellular organisms → Bacteria → Terrabacteria group809Open in IMG/M
3300031897|Ga0318520_11042845All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria517Open in IMG/M
3300031946|Ga0310910_10738788All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria777Open in IMG/M
3300032043|Ga0318556_10057119All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1902Open in IMG/M
3300032063|Ga0318504_10200917All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria930Open in IMG/M
3300032074|Ga0308173_11123349All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria733Open in IMG/M
3300032075|Ga0310890_11865601All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium501Open in IMG/M
3300032089|Ga0318525_10605871All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria559Open in IMG/M
3300032122|Ga0310895_10129009All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium1068Open in IMG/M
3300032782|Ga0335082_10628112All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium936Open in IMG/M
3300032783|Ga0335079_12383244All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria501Open in IMG/M
3300032893|Ga0335069_12754550All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria504Open in IMG/M
3300032897|Ga0335071_10497187All Organisms → cellular organisms → Bacteria1172Open in IMG/M
3300032954|Ga0335083_11157890All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria601Open in IMG/M
3300033803|Ga0314862_0078466All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium745Open in IMG/M


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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil13.11%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil9.84%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil7.38%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil6.56%
Populus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere4.92%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil4.10%
SoilEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Soil4.10%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Soil3.28%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural → Soil3.28%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere3.28%
Surface SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil2.46%
SoilEnvironmental → Terrestrial → Soil → Loam → Grasslands → Soil2.46%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere2.46%
Arabidopsis RhizosphereHost-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere2.46%
Corn RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere2.46%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil1.64%
Tropical PeatlandEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland1.64%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere1.64%
Corn RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere1.64%
Corn RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere1.64%
SoilEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Soil0.82%
Groundwater SedimentEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment0.82%
Vadose Zone SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil0.82%
Terrestrial SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil0.82%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil0.82%
Grass SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Grass Soil0.82%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere0.82%
Agricultural SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil0.82%
Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil0.82%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil0.82%
PeatlandEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Peatland0.82%
Switchgrass RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere0.82%
Agricultural SoilEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil0.82%
Groundwater SandEnvironmental → Terrestrial → Soil → Sand → Unclassified → Groundwater Sand0.82%
Switchgrass RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere0.82%
Arabidopsis Thaliana RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere0.82%
Arabidopsis RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Rhizosphere0.82%
Switchgrass RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere0.82%
Switchgrass RhizosphereHost-Associated → Plants → Roots → Rhizosphere → Soil → Switchgrass Rhizosphere0.82%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere0.82%
Arabidopsis RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere0.82%
Switchgrass, Maize And Mischanthus LitterEngineered → Solid Waste → Grass → Composting → Unclassified → Switchgrass, Maize And Mischanthus Litter0.82%
SimulatedEngineered → Modeled → Simulated Communities (Sequence Read Mixture) → Unclassified → Unclassified → Simulated0.82%
Tropical Rainforest SoilEnvironmental → Terrestrial → Soil → Unclassified → Tropical Rainforest → Tropical Rainforest Soil0.82%

Visualization
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Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
2040502001Soil microbial communities from sample at FACE Site 2 North Carolina CO2+EnvironmentalOpen in IMG/M
2166559005Simulated microbial communities from Lyon, FranceEngineeredOpen in IMG/M
2170459019Litter degradation MG4EngineeredOpen in IMG/M
2189573003Grass soil microbial communities from Rothamsted Park, UK - FE2 (NaCl 30g/L 5ml)EnvironmentalOpen in IMG/M
3300000364Soil microbial communities from Great Prairies - Iowa, Native Prairie soilEnvironmentalOpen in IMG/M
3300000597Forest soil microbial communities from Amazon forest - 2010 replicate II A1EnvironmentalOpen in IMG/M
3300000956Soil microbial communities from Great Prairies - Kansas, Native Prairie soilEnvironmentalOpen in IMG/M
3300002568Grasslands soil microbial communities from Hopland, California, USA - 2EnvironmentalOpen in IMG/M
3300004081Grasslands soil microbial communities from Hopland, California, USA - 2 (version 2)EnvironmentalOpen in IMG/M
3300004114Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5EnvironmentalOpen in IMG/M
3300004463Combined assembly of Arabidopsis thaliana microbial communitiesHost-AssociatedOpen in IMG/M
3300004479Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAsEnvironmentalOpen in IMG/M
3300004480Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 4EnvironmentalOpen in IMG/M
3300005164Soil and rhizosphere microbial communities from Laval, Canada - mgLACEnvironmentalOpen in IMG/M
3300005332Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)EnvironmentalOpen in IMG/M
3300005340Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaGEnvironmentalOpen in IMG/M
3300005363Tropical rainforest soil microbial communities from the Amazon Forest, Brazil, analyzing deforestation - Metatranscriptome F II A100 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300005366Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaGHost-AssociatedOpen in IMG/M
3300005435Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaGEnvironmentalOpen in IMG/M
3300005439Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaGEnvironmentalOpen in IMG/M
3300005455Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaGHost-AssociatedOpen in IMG/M
3300005526Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire. - Coalmine Soil_Cen17_06102014_R1EnvironmentalOpen in IMG/M
3300005529Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen16_06102014_R1EnvironmentalOpen in IMG/M
3300005615Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-3 metaGEnvironmentalOpen in IMG/M
3300005719Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2Host-AssociatedOpen in IMG/M
3300005764Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)EnvironmentalOpen in IMG/M
3300006046Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_101EnvironmentalOpen in IMG/M
3300006175Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaGEnvironmentalOpen in IMG/M
3300006755Agricultural soil microbial communities from Georgia to study Nitrogen management - GA PlitterEnvironmentalOpen in IMG/M
3300006852Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2Host-AssociatedOpen in IMG/M
3300006854Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4Host-AssociatedOpen in IMG/M
3300007076Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4Host-AssociatedOpen in IMG/M
3300009148Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaGHost-AssociatedOpen in IMG/M
3300009156Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)Host-AssociatedOpen in IMG/M
3300009162Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2Host-AssociatedOpen in IMG/M
3300009610Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT700EnvironmentalOpen in IMG/M
3300010043Tropical forest soil microbial communities from Panama - MetaG Plot_26EnvironmentalOpen in IMG/M
3300010046Tropical forest soil microbial communities from Panama - MetaG Plot_36EnvironmentalOpen in IMG/M
3300010047Tropical forest soil microbial communities from Panama - MetaG Plot_30EnvironmentalOpen in IMG/M
3300010048Tropical forest soil microbial communities from Panama - MetaG Plot_11EnvironmentalOpen in IMG/M
3300010362Tropical forest soil microbial communities from Panama - MetaG Plot_22EnvironmentalOpen in IMG/M
3300010371Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1EnvironmentalOpen in IMG/M
3300010375Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaGHost-AssociatedOpen in IMG/M
3300010398Tropical forest soil microbial communities from Panama - MetaG Plot_35EnvironmentalOpen in IMG/M
3300012198Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_20_16 metaGEnvironmentalOpen in IMG/M
3300012390Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_40cm_5_8_1 metaT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300012507Arabidopsis rhizosphere microbial communities from North Carolina - M.Cvi.7.yng.070610Host-AssociatedOpen in IMG/M
3300012897Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S074-202C-1EnvironmentalOpen in IMG/M
3300012899Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S058-202B-2EnvironmentalOpen in IMG/M
3300012955Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_216_MGEnvironmentalOpen in IMG/M
3300012960Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MGEnvironmentalOpen in IMG/M
3300012971Tropical forest soil microbial communities from Panama - MetaG Plot_1EnvironmentalOpen in IMG/M
3300012984Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_247_MGEnvironmentalOpen in IMG/M
3300012985Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_246_MGEnvironmentalOpen in IMG/M
3300012989Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_237_MGEnvironmentalOpen in IMG/M
3300013105Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaGHost-AssociatedOpen in IMG/M
3300013296Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaGHost-AssociatedOpen in IMG/M
3300013307Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaGHost-AssociatedOpen in IMG/M
3300014325Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaGHost-AssociatedOpen in IMG/M
3300014969Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaGHost-AssociatedOpen in IMG/M
3300015201Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S014-104B-1 (version 2)EnvironmentalOpen in IMG/M
3300015371Combined assembly of cpr5 and col0 rhizosphere and soilHost-AssociatedOpen in IMG/M
3300015372Soil combined assemblyHost-AssociatedOpen in IMG/M
3300016341Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170EnvironmentalOpen in IMG/M
3300017792Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaGHost-AssociatedOpen in IMG/M
3300017947Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0815_BV2_4_20_MGEnvironmentalOpen in IMG/M
3300018060Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP05_10_MGEnvironmentalOpen in IMG/M
3300018067Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_5_coexEnvironmentalOpen in IMG/M
3300018469Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 320 TEnvironmentalOpen in IMG/M
3300020081Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-3 (Metagenome Metatranscriptome) (v2)EnvironmentalOpen in IMG/M
3300025911Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025927Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025931Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300027379Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S3_10_20 (SPAdes)EnvironmentalOpen in IMG/M
3300027907Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes)Host-AssociatedOpen in IMG/M
3300028712Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_139EnvironmentalOpen in IMG/M
3300028787Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_381EnvironmentalOpen in IMG/M
3300028876Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_140EnvironmentalOpen in IMG/M
3300031199Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 7_SEnvironmentalOpen in IMG/M
3300031226Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 10_SEnvironmentalOpen in IMG/M
3300031564Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f21EnvironmentalOpen in IMG/M
3300031770Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f17EnvironmentalOpen in IMG/M
3300031805Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f23EnvironmentalOpen in IMG/M
3300031846Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f19EnvironmentalOpen in IMG/M
3300031860Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f25EnvironmentalOpen in IMG/M
3300031892Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C0D2EnvironmentalOpen in IMG/M
3300031896Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f19EnvironmentalOpen in IMG/M
3300031897Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f16EnvironmentalOpen in IMG/M
3300031946Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF172EnvironmentalOpen in IMG/M
3300032043Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f24EnvironmentalOpen in IMG/M
3300032063Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f17EnvironmentalOpen in IMG/M
3300032067Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f22EnvironmentalOpen in IMG/M
3300032074Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.P.R1EnvironmentalOpen in IMG/M
3300032075Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D3EnvironmentalOpen in IMG/M
3300032089Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f23EnvironmentalOpen in IMG/M
3300032122Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C0D4EnvironmentalOpen in IMG/M
3300032782Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.1EnvironmentalOpen in IMG/M
3300032783Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.3EnvironmentalOpen in IMG/M
3300032893Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.1EnvironmentalOpen in IMG/M
3300032897Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.5EnvironmentalOpen in IMG/M
3300032954Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.2EnvironmentalOpen in IMG/M
3300033803Tropical peat soil microbial communities from peatlands in Loreto, Peru - MAQ_0_10EnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
FACENCE_30500802040502001SoilMPVDALRRMGGDLEDALDHVNVPTYVLDREGLVRWMNDAARALVGEQVGRQFTSVVAPEETRRARELFARRSSAMRR
cont_0323.000056002166559005SimulatedVGRAADLDAVHLEEVLEHVNVPSYHLDRTGIVRWLNAAARDLVGDVRGRQFTSVVAPEDTRRARELF
4MG_052153502170459019Switchgrass, Maize And Mischanthus LitterVYVPVEALKAMGADVEATLEHVNVPSYVIDRAGVVRWMNRAAREAVGDRVGRQFSSVVAPEARGAHASCSPARSSATPR
FE2_008259002189573003Grass SoilMPVDALRAVGGDLEGALEHVNVPTYVLDRAGVVRWMNDAARAIVGEQVGRQFTSVVAPEETRGRASCSPARSSATRR
INPhiseqgaiiFebDRAFT_10163086033300000364SoilMEVRAASSLDAVHLEEVLEHVNVPSYHLDRTGIVRWLNAAARKLVGDVRGRQFTSVVAPEDTRRAKELFARK
INPhiseqgaiiFebDRAFT_10583653123300000364SoilMGADVEAALEGVNVPSYVIDRMGVVRWMNEASRKLVGDQVGQQFTSVVAPEETRRARELFARKVL
AF_2010_repII_A1DRAFT_1012021313300000597Forest SoilVPVEALKAMGADLEGTLEHVNVPSYVIDRAGVIRWMNQAARVVVGDQVGRQFTSVVAPEDTRRARELFARKILGNTKVTDAPVA
JGI10216J12902_11027809413300000956SoilMPVAALKTMGGDLEGALEHVNVPSYVIDRAGVVRWMNRAARLLVGDRTGQQFTSIVSPEETL
C688J35102_11983487413300002568SoilMLQLLGDDVVGALELLNVPSYLIDAAGVVRWMNPAATTIVGDVTGRQFTSVVSPDETGRARELFARKVIGNV
C688J35102_12071446223300002568SoilMSDQTSMLQLLGDDVVAALELLNVPSYLIDAAGVVRWMNPAATTIVGDVTGRQFTSVVSPDETGRARELFA
Ga0063454_10113582423300004081SoilVAREPRRAPTLVELGADMEEALTAVNIPSYVIDRSGVIRWLNPAAERYVGDVRGRQFTSVCAPEETRRARELFARKL
Ga0062593_10246278023300004114SoilMSEQPSPAGLHAIPGDVRGAIEKVGVPAYVIDPTGVVRWMNSAAKRLVGDACGRQFTSVVAPEETRRARE
Ga0063356_10287290713300004463Arabidopsis Thaliana RhizosphereMPVSALQEMGFEKVLEHVNVPSYVIDTAGVVRWLNPAAERIVGDVRGRQFTSVVVPEDTRRARELF
Ga0062595_10095842133300004479SoilMSEQPSPAGLHAIPGDVRGAIEKVGVPAYVIDPTGVVRWMNSAAKRIVGDACGRQFTSIVAPEETRRAREHF
Ga0062595_10148627223300004479SoilMDLEDVLEHINVPSYLIEANGIIRWVNPAARRLVGDVAGRQFTSVVAPENTRRARELF
Ga0062595_10241802023300004479SoilMLGQTAPVPVEALKAMGADVERALEHVIVPSYVFDRTGIVRWMNEAAREGVGDRIGRQFTSVVAPEETRRARELFARKILGNTEVTDAPMVVVDSDGGHVAV
Ga0062592_10001511713300004480SoilMNLEDVLEHINVPSYLIDASGIIRWVNPAARRIVGDVAGRQFTSVVAPENTRRAR
Ga0066815_1005377023300005164SoilVPVSALQAMGLEQTLEHVNVPSYVIDTSGVVRWLNPAAERIVGDARGRQFTSVVAPEDTRRARELFA
Ga0066388_10293959513300005332Tropical Forest SoilVAHERRRRAAPTLAELGADMEDALTAVNVPSYVIDRSGVIRWLNPAAERYVGDVRGRQFTSVVAPE
Ga0070689_10139414613300005340Switchgrass RhizosphereMRNTSGVPVDELTAMGADVEGALEHVNVPSYAIDRVGVIRWMNRAARLLVGDQLGRQFTSVVAPEDTGRARELFARKI
Ga0008090_1423233123300005363Tropical Rainforest SoilMPLSTLKEMGADVEGALEHVNVPSYVLDHHGIVRWMNEAARRIVGDQVGKQFTSVVAPEETRRVR
Ga0070659_10078603313300005366Corn RhizosphereMNLEEVLEHINVPSYLIDAQGIVRWVNEAARRIVGDVGGRQFTSVVAPENTLRARE
Ga0070714_10242254823300005435Agricultural SoilMPVDALKAMGGDLEGALEHVNVPTYVLDRAGLVRWMNDAARALVGEQVGRQFTSVVAPEE
Ga0070711_10137128823300005439Corn, Switchgrass And Miscanthus RhizosphereVPVDALKALGADVEDALEHVNVPSYVIDRAGVVRWMNLAAREVVGDRVGRQFTSVVAPEETRRARELFARKIL
Ga0070663_10092078923300005455Corn RhizosphereMPVEALKAMGADLEGALDHVNVASYVIDRAGVVRWMNRAARAVVGDQVGRQFTSVVAPEDTRRARELFARKILGNTEVTDASVGVLGADGGR
Ga0073909_1043674623300005526Surface SoilMPLSALESMEADVVRALDHINVPSYVLDRTGVIRWLNHAARRLVGDVEGRLFTSVVAPEETRRARELFARR
Ga0073909_1065500713300005526Surface SoilVPVSALQAMGLEQTLEHVNVPSYVIDTTGVVRWLNPAAERIVGDARGRQFTSVVAPEDT
Ga0070741_1115164113300005529Surface SoilMPVSALKAMGADVEGALEHVNVPSYVIDHVGVVRWMNEAARRIVGDQVGRQFTSVVAPEETRRAREL
Ga0070702_10133303723300005615Corn, Switchgrass And Miscanthus RhizosphereVPLSALKAMGADVEGALEHVNVPSYVVDRFGVIRWMNGAARGLVGDQLGRQLTSVVAPEDTRRAREVFARNLLGNTKVTDSSVVLVDGAGS
Ga0068861_10235692623300005719Switchgrass RhizosphereMPVSALQEMGLEKVLEHVNVPSYVIDTAGVVRWLNPAAERIVGDVRGRQFTSVVAPEDT
Ga0066903_100004706153300005764Tropical Forest SoilVPVEALKAMGADLEGTLEHVNVPSYVIDRAGVVRWMNRAARTVVGDQVGRQFSSVVAPEDTRRARELFARKILGNTE
Ga0066903_10129337633300005764Tropical Forest SoilMGADLEGTLEHVNVPSYVIDRAGVVRWMNLAARSAVGDQVGRQFTSVVAPEDTRRARELFARKILGN
Ga0066903_10193133453300005764Tropical Forest SoilMGADLEGTLEHVNVPSYVIDRAGVVRWMNRAAREAIGDQVGRQFTSVVAPEDTRRA
Ga0066903_10249883123300005764Tropical Forest SoilMPVPALREMGIDVEAALEHVNVPAYVIDCGGVMRWLNEAARRVVGDQVGRQFTSVVAPEETRRAGELF
Ga0066903_10377137533300005764Tropical Forest SoilMPIDVLQAMGVDVEVALERVNVPSYVVDHLGVVRWMNEAARRLVGDQVGRQFTSVVAPEETRRAQELFSR
Ga0066903_10603883113300005764Tropical Forest SoilVVTGDLRAMGADVEAALEGVQVPSYVIDTSGVIRWLNPAAEMIVGDARGRQFTSLVVPEDRRLSREM
Ga0066903_10742533713300005764Tropical Forest SoilMPVAALRALGADVEDALEHVNVPSYVIDRAGVVRWTNEAARRLVGDQVGRHFTSVVAPEETRRAQEIFTRKVM
Ga0066652_10015465113300006046SoilVKAAGTALHSMDLEDVLEHINVPSYRIDVNGIIRWVNPAARRIVGDVAGRQFTSVVAPENTR
Ga0070712_10195388613300006175Corn, Switchgrass And Miscanthus RhizosphereMGQTARVPVEALRAMGADVEGVLEHVNVPSYVIDRAGVVRWMNEAAREVVGDRVGRQFTSVVAPEETRRARELFARKIL
Ga0079222_1001799713300006755Agricultural SoilMTAENSRSAREGGNRETCVVPIDALREMGADLEGALEHVNVPSYVLDREGVVRWMNDAARRLVGTRVGQQFTSVVAPEETRRARE
Ga0075433_1062451823300006852Populus RhizosphereMDLEEVLEHINVPSYLIEANGIIRWVNPAARRLVGDVTGRQFTSVVAPENTRRARELF
Ga0075425_10209824123300006854Populus RhizosphereMRNTSGVPVDALTAMGADVEGTLEHVNVPSYAIDRVGVIRWMNRAARLLVGDQLGRQFTSVVAPEDTGRARELFARKIIGNTEVTDASVVVLGADGAR
Ga0075435_10121544123300007076Populus RhizosphereMGETAYMPVEALKAMGADVEGALEHVNVPSYVIDHVGVVRWMNRAAREVVGDRIGRQFTSVVAPEDTR
Ga0105243_1308962013300009148Miscanthus RhizosphereVPVEALKAMGADLEGALDHVNVASYVIDRAGVVRWMNLAARRVVGDQVGRQFTSVVAPEDTRRARELFARK
Ga0111538_1366386423300009156Populus RhizosphereMGVSALQQSHLDEVLEHVNVPSYIIDATGIVRWLNRAARNIVGDVRGRQFTSVVTPEDTLRAR
Ga0075423_1172052523300009162Populus RhizosphereMQLEEVLEHVNVPSYVIDRGGVIRWVNLAARNIVGDVRGRQFTSVVAPEGTRRAKEL
Ga0105340_118740413300009610SoilMPLPALNMEGDVAEALEHINIPSYVIDETGVIRWVNTAARRMVGDVSGRQFTSVVAPEETRRAREL
Ga0126380_1015306333300010043Tropical Forest SoilMGLEQVLEHVNVPSYLIDTTGVVRWLNPAAARIVGNVRGRQFTSVVAPEDTRRARELFAR
Ga0126384_1051225123300010046Tropical Forest SoilVTTSASTLNSQDLEDVLEHINVPSYLIRADGIVRWVNPAARRIVGDVVGRQFTSVVAPEDTRRA
Ga0126384_1094232523300010046Tropical Forest SoilMGCSDFRITRYVPVEALKAMGADLEGTLEHVNVPSYVIDRAGVVRWMNREVRTVDGDQVGRQFTSVLAPEDTRRARELFARK
Ga0126382_1218165823300010047Tropical Forest SoilMGDGWVYGRMGSSDFRITRYVPVEALKAMGADLEGTLEHVNVPSYVIDRAGVVRWMNRAARTVVGDQVGRQFTSVVAPE
Ga0126373_1159743413300010048Tropical Forest SoilMGADLEGTLEHVNVPSYVIDRAGVVRWMNLAAREGVGDQVGRQFTSVVAPEDTRRARELFARKILGNTEVTDAALAVVDTAGEHV
Ga0126377_1065908323300010362Tropical Forest SoilMPVAELRAMGVDLEDALEHVNVPSYVIDRAGVVRWINKAARRLVGDQVGRQFTSVVA
Ga0134125_1204354413300010371Terrestrial SoilMQLEDVLEHVNVPSYVLDNRGVVRWVNAAGRILVGNVKGRHFTSIVAPEETLRARERF
Ga0105239_1320108523300010375Corn RhizosphereLIVSRASADIGAIRQTEWMPVEVLRAMGADVEGALEHVNVPSYVLDHTGIVRWMNRAARQIVGDQVGRQFTSVVAPDETRRAREIF
Ga0105239_1330391123300010375Corn RhizosphereVPVEALKAMGADLEGALDHVNVASYVIDRAGVVRWMNRAARAVVGDQVGRQFTSVVAPEDTRRARELFARKIVGN
Ga0126383_1062137213300010398Tropical Forest SoilMGADVEAALDGVNVPSYVIDRLGVVRWMNRAATALVGDQVGRQFTSVVAPEDTRRARELF
Ga0137364_1090083023300012198Vadose Zone SoilVNNSANELRALGGDVESALEDVSVPSYCIDAGGVIRWENRAARELVGDVRGRQFTSVVAPEDIRRSREIFARKIAGTATVTDE
Ga0134054_125814423300012390Grasslands SoilVAREPRRAPTLAELGADMEQALTAVNIPSYVIDRSGVIRWLNPAAEHYVGDVRGRQFTSVCAPEETRRAREIFARKLAGT
Ga0157342_100112643300012507Arabidopsis RhizosphereMQLDDVLEHVNVPSYVIDTSGVIRWLNAAARNLVGDVQGRQFTSVVASEQTQRARELFAR
Ga0157285_1008229433300012897SoilMQVEEVLEHVNVPSYHIDTSGVIRWLNRAAKNIVGDVRGRQFTSVVAPEETLR
Ga0157299_1010387623300012899SoilMQVEEVLEHVNVPSYHIDTSGVIRWLNRAAKNIVGDVRGRQFTSVVAPEETLRAKELFAR
Ga0164298_1059305213300012955SoilVPVEALKAMGADLEGALDHVNVASYVIDRAGVVRWMNRAARAVVGDQVGRQFTSVVAPEDTRRARELFARKILGSTEVTDAPVAVLDAEGGRVAVEISSV
Ga0164301_1007779833300012960SoilVPVEALKAMGADLEGALDHVNVASYVIDRAGVVRWMNRAARAVVGDQVGRQFTSVVAPEDTRRARELFARKILGNTEV
Ga0126369_1197383123300012971Tropical Forest SoilVPVDVLKAMGADLEGTLEHVNVPSYVIDRAGVVRWMNLAARSAVGDQVGRQFTSVVAPEDTRRARELFARKILGNTEVTD
Ga0126369_1252234323300012971Tropical Forest SoilMPLSALKEMGADVEGALEHVNVPSYVLDHFGVVRWMNEAARRIVGDQVGKQFTSVVAPEETRRARELLARKLLGNAPVTNTSVAVVDKEGR
Ga0164309_1042259233300012984SoilVRAGAPATSATLGTLGAELEPALIAVNVPSYVIDSTGVIRWLNPAAEKVVGNCRGRQFTSVCAPEETRRARELF
Ga0164308_1067173313300012985SoilVAADLDAVHLEEVLEHVNVPSYHLDRTGIVRWLNVAARNLVGDVRGRQFTSVVAPEDTRRARELF
Ga0164308_1155050113300012985SoilMAEYHGMPASALAGMAVEDMLEHVNVPSYLIDTTGVIRWVNPAARAIVGDVRGRQFTSVVAPEDSHRARELF
Ga0164305_1169654623300012989SoilMLGQTAPVPVEALKAMGADVEGALEHVNVPSYVIDRTGIVRWMNEAAREGVGDRVGRQFTSVVAPEETRRARELFARKILGNTEVTDAPIVVVD
Ga0164305_1200365223300012989SoilMLESMKLDDVLEHVNIPSYVIDTAGVIRWVNPAGRRLVGDVRGRQFTSVVAPEETLRAR
Ga0157369_1219467113300013105Corn RhizosphereMLGQTAPVPVEALKAMGADVEGALEHVNVPSYVIDRAGIVRWMNEAAREGVGDRIGRQFTSVVAPEETRRGRELFA
Ga0157374_1038931513300013296Miscanthus RhizosphereMLQLMGEDVVEALELLNVPSYLIDAAGVVRWMNPAARALVGDVNGHQFTSVVAPEQTGRARELFARKVI
Ga0157374_1118007413300013296Miscanthus RhizosphereMLGQTAPVPVEALKAMGADVERALEHVNVPSYVIDRTGIVRWMNEAAREGVGDRIGRQFTSVVAPEETRRARELFARKILGNTEVTDAPMVVVDSDG
Ga0157374_1167866113300013296Miscanthus RhizosphereMPVEALKAMGADLEGALDHVNVASYVIDRAGVVRWMNLAARRVVGDQVGRQFTSVVAPEDTRRARELFARKILGNTEVTDAPVAVLDTDGGRVAVEIS
Ga0157372_1083102223300013307Corn RhizosphereVPVEALKAMGADLEGALDHVNVASYVIDRAGVVRWMNRAARAVVGDQVGRQFTSVVAPEDTRRARE
Ga0163163_1119102233300014325Switchgrass RhizosphereVTEASSPATLHSIPGDVRGAIEKVGVPAYVIDPTGVIRWMNGAAIRLVGDRCGRQFTSVVAPEETRRAREHFA
Ga0157376_1039620723300014969Miscanthus RhizosphereMRNTSGVPVDVLTAMGADVEGALEHVNVPSYAIDRVGVIRWMNRAARLLVGDQLGRQFTSVVAPEDTGRARELFARKVIGNTEVTDASVVVLGADGA
Ga0173478_1014100213300015201SoilMQVEEVLEHVNVPSYHIDTSGVIRWLNRAAKNIVGDVRGRQFTSVVAPEETLRAKELFARKIVG
Ga0132258_1042571043300015371Arabidopsis RhizosphereMTPFASALRTLDLEEVLEHINVPSYLIEASGTVRWINPAARQIVGDVVGRHFANVVAPEDTRRARELFARKIVGGKT
Ga0132258_1302452413300015371Arabidopsis RhizosphereMPIAALQSLQVQEVLEHVNVPSYLLDVAGVVRWLNPAARRLVGDVRGRQFTTVVAPDDTRRA
Ga0132258_1349363813300015371Arabidopsis RhizosphereMGADVEGTLEHVNVPSYVIDRAGVVRWMNRAAREAIGDQVGRQFSSVVAPEDTRRARELFARKIV
Ga0132256_10258123623300015372Arabidopsis RhizosphereMSPATDDVGGKEKMHSSMLELMGEDVVEALELLNVPSYLIDAAGVVRWMNPAAQKLVGDVNGHQFTSVVAPE
Ga0182035_1032544213300016341SoilVIDVPPSLDAVHLEQALEHVNVPSYHIDPTGVIRWLNVAARNLVGDVRGAQFTSVVAPEDTRRAKELF
Ga0163161_1116443713300017792Switchgrass RhizosphereMPVSALQEMGLEKVLEHVNVPSYVIDTAGVVRWLNPAAERIVGDVRGRQFTSVVAPEDTRRARELFARKVVG
Ga0187785_1080321123300017947Tropical PeatlandMPVEALKAMGADVEGALDHVNVPSYVIDHAGVVRWMNEAARRLVGDRVGRQFTSIVHPEETRRARELFARKLLGNSDVTDAFFRVVDAQGDHIGVEISSVP
Ga0187765_1122187313300018060Tropical PeatlandVPVSALRAIGGDVEGALEHVNVPSYVIDRAGVVRWMNEAAKGIVGDQIGRQFTSVVAPEETRRARELFARK
Ga0184611_131430213300018067Groundwater SedimentMPVSALQEMGLEKVLEHVNVPSYVIDTAGVVRWLNPAAERIVGDVRGRQFTSVVAPEDTRRAREL
Ga0190270_1283470823300018469SoilMEVAETLEHVNVPSYVIDATGIIRWMNPAAQRIVGDVRGLQFTSVVSPEDTRRARELFARKVV
Ga0206354_1050151613300020081Corn, Switchgrass And Miscanthus RhizosphereMLGQTAPVPVEALKAMGADVEGALEHVNVPSYVIDRAGIVRWMNEAAREGVGDRIGRQFTSVVAPEETRRAREMFARKVVGAVKVTDAGIV
Ga0207654_1083468523300025911Corn RhizosphereVPVEALKAMGADLEGALDHVNVASYVIDRAGVVRWMNLAARRVVGDQVGRQFTSVVAPEDTRRARELFARKILGNTEVTDAPVAVLDTDGGRVAV
Ga0207687_1194230713300025927Miscanthus RhizosphereMGVSALQQSHLDEVLEHVNVPSYIIDATGIVRWLNRAARNIVGDVRGRQFTSVVTPEDTPRAR
Ga0207644_1172478113300025931Switchgrass RhizosphereVPMSALESMQLDDVLEHVNVPSYVIDTGGVIRWVNAAGRSLVGDVRGRQFTSVVAPEETLRAR
Ga0209842_102994423300027379Groundwater SandMSGLRALGGDVEGALEGVNVPSYMIDQTGVIRWTNRAAERRLGDVRGRQFTSVVAPEDTRRAREAFAQK
Ga0207428_1088428213300027907Populus RhizosphereMPVEVLKAMGADLEGTLEYVNVPSYVIDRVGVVRWMNRAARTVVGDQIGRQFTSVVAPEDTR
Ga0307285_1009007423300028712SoilMPVPMLQLMGEDVVEALELLNVPSYLIDAAGVVRWMNPAAKTLVGNVNGHQFTSVVSPEQTGRARELFARKVI
Ga0307323_1006191523300028787SoilMGSDVAEALEHINIPSYVLDETGVIRWVNTAARRIVGDVSGRQFTSVVAPEETRRAREVFARNLLGTAPVTD
Ga0307286_1035290223300028876SoilMPSPMLQLMGEDVVEALELLNVPSYLIDAAGVVRWMNPAAKTLVGNVNGHQFTSVVAPEQTGRARELFARKVI
Ga0307495_1022097523300031199SoilVPVEVLKAMGADLEGALDHVNVASYVIDRAGVVRWMNRAARAVVGDQVGRQFTSVVAPEDTRRAREL
Ga0307497_1062356713300031226SoilMPVDALKAMGADVEGALEHVNVPSYVIDRAGVVRWMNEAAREAVGDRIGRQFTSVVAPEDTRRARERFVLKILGNT
Ga0318573_1028836813300031564SoilMGADLEGALDHVNVPSYMIDRAGVVRWMNPAARAMVGDQVGRQFTSVVAPEDTRRARELFVRKILGNTEVTDAPVSVVDTAGEHVSVE
Ga0318521_1086578013300031770SoilMRNTGAVAVEALKAMGADIEDALEHVNVPSYVIDREGIVRWMNRSARTLVGDQVGRQFTSVVAPEETRRARELFARKILGN
Ga0318497_1023518523300031805SoilMGADLEGALDHVNVPSYMIDRAGVVRWMNHAAREVVGDQVGRQFTSVVAPEDT
Ga0318512_1041015013300031846SoilVAVEALKAMGADIEDALEHVNVPSYVIDRVGIVRWMNRAARTLVGDQVGRQFTSVVAPEETRRAKELFARKILGNTEVTDASVVVIDTEGARVGVEISSVPL
Ga0318495_1017179723300031860SoilMGADLEGALDHVNVPSYMIDRAGVVRWMNPAARAMVGDQVGRQFTSVVAPEDTRRARELFVRKILGNT
Ga0310893_1021636913300031892SoilMAGLEALDSDVEAALEDISIPSYMIDQSGVIRWTNAAATKCVGDVRGRQLTSVVAPEETRRARELF
Ga0318551_1037298713300031896SoilMSALGGTGGDLEGALENINVPSYVIDRTGVIRWVNPAAEHVVGDVVGRQFTSVVAPHEVHRARESFASK
Ga0318520_1104284523300031897SoilMGADLEGALDHVNVPSYMIDRAGVVRWMNPAARAMVGDQVGRQFTSVVAPED
Ga0310910_1073878813300031946SoilVAVEALKAMGADIEDALEHVNVPSYVIDRVGIVRWMNRAARTLVGDQVGRQFTSVVAPEETRRAKELFARKILGNTEVTDASVVVIDTEGARV
Ga0318556_1005711923300032043SoilMGADLEGALDHVNVPSYMIDRAGVVRWMNPAARAMVGDQVGRQFTSVVAPEDTRRARELFVRKIMGNTE
Ga0318504_1020091713300032063SoilMGADLEEALDHVNVPSYMIDRAGVVRWMNPAARAMVGDQVGRQFTSVVAPEDTRRARELFVRKILGN
Ga0318524_1073737423300032067SoilMPVEALRAMGADVEGALEHINVPSYVLDHVGVIRWMNLAARRMVGDQVGRQFT
Ga0308173_1112334913300032074SoilMPLSTLKAMGADVEDALEHVNVPSYVLDNVGVVRWMNEAARRIVGDQVGRQFTSVVAPEETRRARELLARKLLGNAPVTKASLAR
Ga0310890_1186560123300032075SoilVPVSALKQMGGDVAGALEHVNVPSYVIDRFGVIRWMNSAARRIVGDQVGHQFTSVVAPEDTIRARET
Ga0318525_1060587113300032089SoilMGADLEGALDHVNVPSYMIDRAGVVRWMNPAARAMVGDQVGRQFTSVVAPEDTRRARELFVRKILG
Ga0310895_1012900913300032122SoilMSRLRELGGDVEGALDRVKVPSYVIDEHGIIRWVNAAGMELVGDVRGRQFTSVVAPEDTRRARELFVRKILGNTEVTDAPVGVLGAD
Ga0335082_1062811223300032782SoilMPVEALRAMGADLEGALEHINVPSYVIDRVGVIRWMNEAARVRAGDQVGRQFTSVVHPED
Ga0335079_1238324413300032783SoilMGADLEGALDHVNVPSYVIDRAGVVRWMNEAARTMVGDQVGRQFTSVVAPEDTRRARELFARKILGN
Ga0335069_1275455023300032893SoilMPVAALRAMGADVEGALENINVPSYVIDDVGVIRWMNKAARLAVGDQVGRQFTSVVHPDDTRRARELFVRKLMGKTPVTDAAVTV
Ga0335071_1049718713300032897SoilMPVAALKAMGADLEGALEHINVPSYVIDRVGVIRWMNEAARLRAGDQVGRQFTSVVHPEDTRRARDLFTRKVIGN
Ga0335083_1115789023300032954SoilVPVEALRAMGADLEGALEHINVPSYVIDRVGVIRWMNEAARLRAGDQVGRQFTSVVHPEDTRRARDLFTRKVIGNATVTDGAVSIVDDAGVRISVE
Ga0314862_0078466_1_1953300033803PeatlandMPVAALRAMGADVEGALENVNVPSYVIDDAGVIRWMNKAARLGVGDQVGRQFTSVVHPDDTRRAR

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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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