Metagenome / Metatranscriptome Family F071288

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F071288
Family Type	Metagenome / Metatranscriptome
Number of Sequences	122
Average Sequence Length	113 residues
Representative Sequence	MWVSTISPEGRIQHMTRHRHGHGSLHRGDATALPHVGYWIVEHRDASLCAISGYVRGDVSVLDSLNRTGQQLLLILDNGARLPIVLTEKRTDGGWEFTSTVASPIEFVSRVTAF
Number of Associated Samples	94
Number of Associated Scaffolds	122

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	31.97 %
% of genes near scaffold ends (potentially truncated)	31.15 %
% of genes from short scaffolds (< 2000 bps)	81.97 %
Associated GOLD sequencing projects	82
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.74

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (77.869 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere (16.393 % of family members)
Environment Ontology (ENVO)	Unclassified (34.426 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (71.311 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 7.04% β-sheet: 44.37% Coil/Unstructured: 48.59%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.74
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.74
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Structural matches with SCOPe domains

SCOP family	SCOP domain	Representative PDB	TM-score
b.106.1.3: XkdM-like	d2guja1	2guj	0.6038
b.106.1.0: automated matches	d6gkxa_	6gkx	0.60202
b.45.2.1: PilZ domain	d3kyga2	3kyg	0.57997
b.45.2.1: PilZ domain	d5xlyb_	5xly	0.57455
b.45.2.2: PilZ domain-associated domain	d3kyga1	3kyg	0.56173

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 122 Family Scaffolds
PF01322	Cytochrom_C_2	4.92
PF08309	LVIVD	2.46
PF05050	Methyltransf_21	1.64
PF16561	AMPK1_CBM	0.82
PF13418	Kelch_4	0.82
PF03928	HbpS-like	0.82
PF02894	GFO_IDH_MocA_C	0.82
PF00034	Cytochrom_C	0.82
PF05138	PaaA_PaaC	0.82
PF07366	SnoaL	0.82
PF01814	Hemerythrin	0.82

COG ID	Name	Functional Category	% Frequency in 122 Family Scaffolds
COG3909	Cytochrome c556	Energy production and conversion [C]	4.92
COG5276	Uncharacterized secreted protein, contains LVIVD repeats, choice-of-anchor domain	Function unknown [S]	2.46
COG0673	Predicted dehydrogenase	General function prediction only [R]	0.82
COG3396	1,2-phenylacetyl-CoA epoxidase, catalytic subunit	Secondary metabolites biosynthesis, transport and catabolism [Q]	0.82

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	77.87 %
All Organisms	root	All Organisms	22.13 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	77.87 %
cellular organisms	root	All Organisms → cellular organisms	22.13 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	77.87 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	21.31 %
Eukaryota	superkingdom	All Organisms → cellular organisms → Eukaryota	0.82 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	77.87 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	16.39 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.82 %
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	0.82 %
Opisthokonta	clade	All Organisms → cellular organisms → Eukaryota → Opisthokonta	0.82 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	77.87 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	13.93 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.82 %
Gemmatimonadetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	0.82 %
Metazoa	kingdom	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa	0.82 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	77.87 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	13.11 %
Acidobacteria bacterium RIFCSPLOWO2_02_FULL_68_18	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPLOWO2_02_FULL_68_18	0.82 %
unclassified Chloroflexi	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi	0.82 %
Eumetazoa	clade	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa	0.82 %
Gemmatimonadetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	0.82 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	77.87 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	13.11 %
Cnidaria	phylum	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Cnidaria	0.82 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.82 %
Acidobacteria bacterium RIFCSPLOWO2_02_FULL_68_18	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPLOWO2_02_FULL_68_18	0.82 %
Gemmatimonadetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	0.82 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	77.87 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	13.11 %
Anthozoa	class	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Cnidaria → Anthozoa	0.82 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.82 %
Acidobacteria bacterium RIFCSPLOWO2_02_FULL_68_18	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPLOWO2_02_FULL_68_18	0.82 %
Gemmatimonadetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	0.82 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	77.87 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	13.11 %
Hexacorallia	subclass	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Cnidaria → Anthozoa → Hexacorallia	0.82 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.82 %
Acidobacteria bacterium RIFCSPLOWO2_02_FULL_68_18	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPLOWO2_02_FULL_68_18	0.82 %
Gemmatimonadetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	0.82 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	77.87 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	13.11 %
Actiniaria	order	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Cnidaria → Anthozoa → Hexacorallia → Actiniaria	0.82 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.82 %
Acidobacteria bacterium RIFCSPLOWO2_02_FULL_68_18	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPLOWO2_02_FULL_68_18	0.82 %
Gemmatimonadetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	0.82 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	77.87 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	13.11 %
Edwardsiidae	family	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Cnidaria → Anthozoa → Hexacorallia → Actiniaria → Edwardsiidae	0.82 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.82 %
Acidobacteria bacterium RIFCSPLOWO2_02_FULL_68_18	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPLOWO2_02_FULL_68_18	0.82 %
Gemmatimonadetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	0.82 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	77.87 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	13.11 %
Nematostella	genus	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Cnidaria → Anthozoa → Hexacorallia → Actiniaria → Edwardsiidae → Nematostella	0.82 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.82 %
Acidobacteria bacterium RIFCSPLOWO2_02_FULL_68_18	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPLOWO2_02_FULL_68_18	0.82 %
Gemmatimonadetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	0.82 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	77.87 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	13.11 %
Nematostella vectensis	species	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Cnidaria → Anthozoa → Hexacorallia → Actiniaria → Edwardsiidae → Nematostella → Nematostella vectensis	0.82 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.82 %
Acidobacteria bacterium RIFCSPLOWO2_02_FULL_68_18	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPLOWO2_02_FULL_68_18	0.82 %
Gemmatimonadetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	0.82 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2162886006\|SwRhRL3b_contig_1391277	Not Available	1226	Open in IMG/M
2162886006\|SwRhRL3b_contig_551485	Not Available	968	Open in IMG/M
2162886007\|SwRhRL2b_contig_2711438	Not Available	1220	Open in IMG/M
3300000364\|INPhiseqgaiiFebDRAFT_105622112	Not Available	1352	Open in IMG/M
3300000550\|F24TB_13030344	Not Available	1299	Open in IMG/M
3300000559\|F14TC_100541380	Not Available	1901	Open in IMG/M
3300000789\|JGI1027J11758_12104210	Not Available	702	Open in IMG/M
3300000891\|JGI10214J12806_11251791	All Organisms → cellular organisms → Bacteria	5906	Open in IMG/M
3300000891\|JGI10214J12806_12913851	Not Available	668	Open in IMG/M
3300000955\|JGI1027J12803_100022314	Not Available	997	Open in IMG/M
3300003319\|soilL2_10223013	All Organisms → cellular organisms → Bacteria → Acidobacteria	1954	Open in IMG/M
3300003324\|soilH2_10212036	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2661	Open in IMG/M
3300004114\|Ga0062593_100013398	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3981	Open in IMG/M
3300004114\|Ga0062593_100167878	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1695	Open in IMG/M
3300004114\|Ga0062593_100359670	Not Available	1278	Open in IMG/M
3300004157\|Ga0062590_100705471	Not Available	910	Open in IMG/M
3300004480\|Ga0062592_100717015	Not Available	873	Open in IMG/M
3300004480\|Ga0062592_100794944	Not Available	838	Open in IMG/M
3300004798\|Ga0058859_11415824	Not Available	773	Open in IMG/M
3300004798\|Ga0058859_11527533	Not Available	601	Open in IMG/M
3300005093\|Ga0062594_100133636	Not Available	1581	Open in IMG/M
3300005093\|Ga0062594_100460794	Not Available	1057	Open in IMG/M
3300005183\|Ga0068993_10172457	Not Available	740	Open in IMG/M
3300005289\|Ga0065704_10692699	Not Available	564	Open in IMG/M
3300005293\|Ga0065715_10375102	Not Available	914	Open in IMG/M
3300005295\|Ga0065707_10291197	Not Available	1025	Open in IMG/M
3300005332\|Ga0066388_100271614	Not Available	2338	Open in IMG/M
3300005336\|Ga0070680_100334248	Not Available	1287	Open in IMG/M
3300005339\|Ga0070660_100651106	Not Available	882	Open in IMG/M
3300005340\|Ga0070689_100135818	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1975	Open in IMG/M
3300005345\|Ga0070692_11128242	Not Available	555	Open in IMG/M
3300005365\|Ga0070688_100186651	Not Available	1442	Open in IMG/M
3300005438\|Ga0070701_10431210	Not Available	842	Open in IMG/M
3300005440\|Ga0070705_100092007	Not Available	1892	Open in IMG/M
3300005440\|Ga0070705_100574146	Not Available	868	Open in IMG/M
3300005441\|Ga0070700_100462673	Not Available	968	Open in IMG/M
3300005444\|Ga0070694_100750141	Not Available	797	Open in IMG/M
3300005466\|Ga0070685_10188056	Not Available	1334	Open in IMG/M
3300005468\|Ga0070707_101909416	Not Available	561	Open in IMG/M
3300005545\|Ga0070695_100633182	Not Available	843	Open in IMG/M
3300005564\|Ga0070664_100100083	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2520	Open in IMG/M
3300005841\|Ga0068863_100138372	All Organisms → cellular organisms → Bacteria → Acidobacteria	2326	Open in IMG/M
3300005841\|Ga0068863_101341489	Not Available	722	Open in IMG/M
3300005842\|Ga0068858_100251538	Not Available	1679	Open in IMG/M
3300005842\|Ga0068858_100583015	Not Available	1084	Open in IMG/M
3300006049\|Ga0075417_10148875	Not Available	1088	Open in IMG/M
3300006058\|Ga0075432_10526636	Not Available	530	Open in IMG/M
3300006358\|Ga0068871_100084809	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2629	Open in IMG/M
3300006844\|Ga0075428_101058294	Not Available	858	Open in IMG/M
3300006844\|Ga0075428_101379688	Not Available	740	Open in IMG/M
3300006852\|Ga0075433_10260614	Not Available	1537	Open in IMG/M
3300006854\|Ga0075425_102377206	Not Available	588	Open in IMG/M
3300006871\|Ga0075434_100170295	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2198	Open in IMG/M
3300006880\|Ga0075429_100715319	Not Available	877	Open in IMG/M
3300006881\|Ga0068865_100990154	Not Available	736	Open in IMG/M
3300006969\|Ga0075419_10215598	Not Available	1275	Open in IMG/M
3300009093\|Ga0105240_12256624	Not Available	564	Open in IMG/M
3300009094\|Ga0111539_10260413	All Organisms → cellular organisms → Bacteria	2019	Open in IMG/M
3300009094\|Ga0111539_10789437	Not Available	1105	Open in IMG/M
3300009100\|Ga0075418_10117226	All Organisms → cellular organisms → Bacteria	2829	Open in IMG/M
3300009100\|Ga0075418_10524864	Not Available	1272	Open in IMG/M
3300009100\|Ga0075418_11556353	Not Available	718	Open in IMG/M
3300009147\|Ga0114129_10032211	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	7409	Open in IMG/M
3300009147\|Ga0114129_10161937	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3055	Open in IMG/M
3300009156\|Ga0111538_10294102	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2055	Open in IMG/M
3300009162\|Ga0075423_12569427	Not Available	556	Open in IMG/M
3300009176\|Ga0105242_10525288	Not Available	1130	Open in IMG/M
3300010047\|Ga0126382_10061173	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2261	Open in IMG/M
3300010047\|Ga0126382_10150052	Not Available	1594	Open in IMG/M
3300010359\|Ga0126376_12356739	Not Available	579	Open in IMG/M
3300010362\|Ga0126377_10249913	Not Available	1726	Open in IMG/M
3300010399\|Ga0134127_12196996	Not Available	631	Open in IMG/M
3300011119\|Ga0105246_10149723	Not Available	1765	Open in IMG/M
3300011119\|Ga0105246_10494979	Not Available	1037	Open in IMG/M
3300012506\|Ga0157324_1060771	Not Available	516	Open in IMG/M
3300012948\|Ga0126375_10505501	Not Available	902	Open in IMG/M
3300013297\|Ga0157378_10783768	Not Available	978	Open in IMG/M
3300013308\|Ga0157375_10275937	Not Available	1843	Open in IMG/M
3300014262\|Ga0075301_1019003	Not Available	1139	Open in IMG/M
3300014325\|Ga0163163_10556086	Not Available	1210	Open in IMG/M
3300014969\|Ga0157376_10455807	Not Available	1248	Open in IMG/M
3300015201\|Ga0173478_10305283	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Cnidaria → Anthozoa → Hexacorallia → Actiniaria → Edwardsiidae → Nematostella → Nematostella vectensis	723	Open in IMG/M
3300015371\|Ga0132258_11244399	Not Available	1881	Open in IMG/M
3300015371\|Ga0132258_13428085	Not Available	1088	Open in IMG/M
3300015371\|Ga0132258_13606108	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPLOWO2_02_FULL_68_18	1058	Open in IMG/M
3300015371\|Ga0132258_13973866	Not Available	1004	Open in IMG/M
3300015372\|Ga0132256_100385208	Not Available	1502	Open in IMG/M
3300015372\|Ga0132256_100890553	Not Available	1006	Open in IMG/M
3300015372\|Ga0132256_103476674	Not Available	530	Open in IMG/M
3300015373\|Ga0132257_100058956	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	4302	Open in IMG/M
3300015373\|Ga0132257_100088584	All Organisms → cellular organisms → Bacteria	3539	Open in IMG/M
3300015373\|Ga0132257_100202224	Not Available	2354	Open in IMG/M
3300015373\|Ga0132257_100341779	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1807	Open in IMG/M
3300015374\|Ga0132255_100167193	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3084	Open in IMG/M
3300015374\|Ga0132255_101590769	Not Available	990	Open in IMG/M
3300025315\|Ga0207697_10562899	Not Available	501	Open in IMG/M
3300025893\|Ga0207682_10372530	Not Available	674	Open in IMG/M
3300025907\|Ga0207645_10238930	Not Available	1200	Open in IMG/M
3300025908\|Ga0207643_10005725	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	6644	Open in IMG/M
3300025908\|Ga0207643_10126885	Not Available	1515	Open in IMG/M
3300025925\|Ga0207650_10439631	Not Available	1084	Open in IMG/M
3300025926\|Ga0207659_10001709	All Organisms → cellular organisms → Bacteria → Acidobacteria	13027	Open in IMG/M
3300025936\|Ga0207670_11766388	Not Available	526	Open in IMG/M
3300025940\|Ga0207691_11672807	Not Available	516	Open in IMG/M
3300025944\|Ga0207661_11997462	Not Available	526	Open in IMG/M
3300025945\|Ga0207679_10041862	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3288	Open in IMG/M
3300025972\|Ga0207668_10365444	Not Available	1210	Open in IMG/M
3300026075\|Ga0207708_10406823	Not Available	1126	Open in IMG/M
3300026088\|Ga0207641_11125286	Not Available	784	Open in IMG/M
3300026116\|Ga0207674_10110054	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2730	Open in IMG/M
3300026121\|Ga0207683_10289686	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1497	Open in IMG/M
3300027873\|Ga0209814_10260513	Not Available	753	Open in IMG/M
3300027907\|Ga0207428_10954172	Not Available	604	Open in IMG/M
3300028380\|Ga0268265_12591527	Not Available	513	Open in IMG/M
3300031716\|Ga0310813_10894076	Not Available	805	Open in IMG/M
3300032017\|Ga0310899_10081819	Not Available	1265	Open in IMG/M
3300032122\|Ga0310895_10242990	Not Available	828	Open in IMG/M
3300032180\|Ga0307471_102692725	Not Available	631	Open in IMG/M
3300033412\|Ga0310810_10449260	Not Available	1306	Open in IMG/M
3300034666\|Ga0314788_157463	Not Available	559	Open in IMG/M
3300034670\|Ga0314795_062539	Not Available	682	Open in IMG/M
3300034670\|Ga0314795_088539	Not Available	606	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Host-Associated	Host-Associated	56.56%
Environmental	Environmental	43.44%

Habitat	Taxonomy	Distribution
Plants	Host-Associated → Plants	54.92%
Terrestrial	Environmental → Terrestrial	42.62%
Human	Host-Associated → Human	1.64%
Aquatic	Environmental → Aquatic	0.82%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	42.62%
Rhizosphere	Host-Associated → Plants → Rhizosphere	31.97%
Rhizoplane	Host-Associated → Plants → Rhizoplane	21.31%
Digestive System	Host-Associated → Human → Digestive System	1.64%
Roots	Host-Associated → Plants → Roots	1.64%
Marine	Environmental → Aquatic → Marine	0.82%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	27.05%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	22.13%
Loam	Environmental → Terrestrial → Soil → Loam	14.75%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	10.66%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	9.84%
Soil	Host-Associated → Plants → Rhizosphere → Soil	9.84%
Large Intestine	Host-Associated → Human → Digestive System → Large Intestine	1.64%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	1.64%
Wetlands	Environmental → Aquatic → Marine → Wetlands	0.82%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	0.82%
Soil	Host-Associated → Plants → Rhizoplane → Soil	0.82%

Habitat	Taxonomy	Distribution
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	22.13%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	12.30%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	10.66%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	9.84%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	9.84%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	9.84%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	8.20%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	4.10%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	4.10%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	1.64%
Fecal	Host-Associated → Human → Digestive System → Large Intestine → Fecal	1.64%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	1.64%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	0.82%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	0.82%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	0.82%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	0.82%
Unclassified	Host-Associated → Plants → Rhizoplane → Soil → Unclassified	0.82%

Habitat	Taxonomy	Distribution
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	16.39%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	8.20%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	7.38%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	6.56%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	4.92%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	4.10%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	4.10%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	4.10%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	3.28%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	3.28%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	2.46%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere	2.46%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	2.46%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	2.46%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	2.46%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	2.46%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	2.46%
Sugarcane Root And Bulk Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Sugarcane Root And Bulk Soil	1.64%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	1.64%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	1.64%
Host-Associated	Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated	1.64%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Switchgrass Rhizosphere	1.64%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	1.64%
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	0.82%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.82%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.82%
Natural And Restored Wetlands	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Natural And Restored Wetlands	0.82%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	0.82%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Miscanthus Rhizosphere	0.82%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	0.82%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Rhizosphere	0.82%
Corn, Switchgrass And Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	0.82%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere	0.82%
Miscanthus Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere	0.82%
Switchgrass Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Switchgrass Rhizosphere	0.82%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.82%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2162886006	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL3	Environmental	Open in IMG/M
2162886007	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2	Host-Associated	Open in IMG/M
3300000364	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000550	Amended soil microbial communities from Kansas Great Prairies, USA - BrdU amended with acetate total DNA F2.4 TB clc assemly	Environmental	Open in IMG/M
3300000559	Amended soil microbial communities from Kansas Great Prairies, USA - control no BrdU total DNA F1.4 TC clc assemly	Environmental	Open in IMG/M
3300000789	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000891	Soil microbial communities from Great Prairies - Wisconsin, Continuous corn soil	Environmental	Open in IMG/M
3300000955	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300003319	Sugarcane bulk soil Sample L2	Environmental	Open in IMG/M
3300003324	Sugarcane bulk soil Sample H2	Environmental	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300004157	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - - Combined assembly of AARS Block 2	Environmental	Open in IMG/M
3300004480	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 4	Environmental	Open in IMG/M
3300004798	Switchgrass rhizosphere and bulk soil microbial communities from Kellogg Biological Station, Michigan, USA for expression studies - roots SR-2 (Metagenome Metatranscriptome)	Host-Associated	Open in IMG/M
3300005093	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All Blocks	Environmental	Open in IMG/M
3300005183	Wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Browns_ThreeSqC_D1	Environmental	Open in IMG/M
3300005289	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2	Host-Associated	Open in IMG/M
3300005293	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Bulk Soil Replicate 1 : eDNA_1	Host-Associated	Open in IMG/M
3300005295	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL3	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005336	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG	Environmental	Open in IMG/M
3300005339	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG	Host-Associated	Open in IMG/M
3300005340	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG	Environmental	Open in IMG/M
3300005345	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-2 metaG	Environmental	Open in IMG/M
3300005365	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3H metaG	Environmental	Open in IMG/M
3300005438	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-2 metaG	Environmental	Open in IMG/M
3300005440	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG	Environmental	Open in IMG/M
3300005441	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG	Environmental	Open in IMG/M
3300005444	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG	Environmental	Open in IMG/M
3300005466	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3L metaG	Environmental	Open in IMG/M
3300005468	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG	Environmental	Open in IMG/M
3300005545	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaG	Environmental	Open in IMG/M
3300005564	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG	Host-Associated	Open in IMG/M
3300005841	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2	Host-Associated	Open in IMG/M
3300005842	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2	Host-Associated	Open in IMG/M
3300006049	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1	Host-Associated	Open in IMG/M
3300006058	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1	Host-Associated	Open in IMG/M
3300006358	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2	Host-Associated	Open in IMG/M
3300006844	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2	Host-Associated	Open in IMG/M
3300006852	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2	Host-Associated	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated	Open in IMG/M
3300006880	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3	Host-Associated	Open in IMG/M
3300006881	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2	Host-Associated	Open in IMG/M
3300006969	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD3	Host-Associated	Open in IMG/M
3300009093	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG	Host-Associated	Open in IMG/M
3300009094	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)	Host-Associated	Open in IMG/M
3300009100	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2	Host-Associated	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated	Open in IMG/M
3300009176	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG	Host-Associated	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010399	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3	Environmental	Open in IMG/M
3300011119	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG	Host-Associated	Open in IMG/M
3300012506	Arabidopsis rhizosphere microbial communities from North Carolina - M.Oy.6.old.040610	Host-Associated	Open in IMG/M
3300012948	Tropical forest soil microbial communities from Panama - MetaG Plot_14	Environmental	Open in IMG/M
3300013297	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG	Host-Associated	Open in IMG/M
3300013308	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG	Host-Associated	Open in IMG/M
3300014262	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Browns_TuleA_D1	Environmental	Open in IMG/M
3300014325	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG	Host-Associated	Open in IMG/M
3300014969	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG	Host-Associated	Open in IMG/M
3300015201	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S014-104B-1 (version 2)	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300025315	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes)	Host-Associated	Open in IMG/M
3300025893	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025907	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025908	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025925	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025926	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025936	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes)	Environmental	Open in IMG/M
3300025940	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025944	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes)	Environmental	Open in IMG/M
3300025945	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025972	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026075	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300026088	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026116	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026121	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300027873	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1 (SPAdes)	Host-Associated	Open in IMG/M
3300027907	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes)	Host-Associated	Open in IMG/M
3300028380	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300031716	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YN3	Environmental	Open in IMG/M
3300032017	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C8D4	Environmental	Open in IMG/M
3300032122	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C0D4	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300033412	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - NC	Environmental	Open in IMG/M
3300034666	Metatranscriptome of lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C8R2 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300034670	Metatranscriptome of lab incibated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C8R4 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
SwRhRL3b_0334.00001630	2162886006	Switchgrass Rhizosphere	MWMSTVSPEGRIQRMTRHRHGHGALLRGDAVALPHVGYWIVEQREASSCAISGHVRGDVQVLASLNRAGQQLLLILDNGTRLPILLTEKRTDGVTWEFISTVASPIDFVSRTANRL
SwRhRL3b_0509.00001530	2162886006	Switchgrass Rhizosphere	MWMSTVSPEGRIQRMTRHRHGHGALLRGDAVALPHVGYWIVEEREASSCAISGHVRGDVQVLASLNRAGQQLLLILDNGTRLPILLTEKRTDGVTWEFISTVASPIDFVSRTANRL
SwRhRL2b_0530.00000370	2162886007	Switchgrass Rhizosphere	MWMSTVSPEGRIQRMTRHRHGHGALLRGDAVALPHVGYWIVEQREASSCAISGHVRGDVQVLASLNRAGQQLLLILDNGTRLPILLTEKRTDGVTWEFISTVASPIDFVSRTANRP
INPhiseqgaiiFebDRAFT_1056221123	3300000364	Soil	VGNLGAXGXTLIRXRPAQPSRVTEXPLNRPSCMWVSSXSPEGRIQRMTRHRHGHGALLREGAVALPHVGYWIVEDRDASTCAISGYVRGDGKVLESLHKTRQQLVLILDNGTLLPIXLTEKRTDGLTWDFTSTVASPVEYVSRPPLRL*
F24TB_130303442	3300000550	Soil	MTRHRHXHGSLLRGDAVALPHVGYWIVEDRDASTCAISGHVRGDVKVLESLNRAGQQLLLMLDNGTSLPILLTKKRTDGLTWEFTSTVASPIEFGSRPLRVSTR*
F14TC_1005413805	3300000559	Soil	MTRHRHGHGSLLRGDAVALPHVGYWIVEDRDASTCAISGHVRGDVKVLESLNRAGQQLVLMLDNGTSLPILLTEKRTDGLTWEFTSTVASPIEFGSRPLRVSTR*
JGI1027J11758_121042101	3300000789	Soil	RHGHGALLREGAVALPHVGYWIVEDRDASTCAISGYVRGDGKVLESLHKTRQQLVLILDNGTLLPILLTEKRTDGLTWDFTSTVASPVEYVSRPPLRL*
JGI10214J12806_112517911	3300000891	Soil	GRITRMTRHRHGHGSLLRGDLVALPHVGYWVVEQRNASVCTIGGKIRGDLHALESLNRAGQQLVLLLDSGTRLPIVLTEKGTDGMTWEFTSTASSPLEFVNFTPRGV*
JGI10214J12806_129138512	3300000891	Soil	MWVSSVTPEGRIQRMTRHRHGHGQLLRGDAVALPHVGYWVVEDRDGVSCAIFGHVRGDVRVLASLNTGGQQLLLILENGTRLPIVLTEKRTDGSWEFTSTAASPIEFASRSTRRF*
JGI1027J12803_1000223142	3300000955	Soil	MTRHRHGHGALLREGAVALPHVGYWIVEDRDASTCAISGYVRGDGKVLESLHKTRQQLVLILDNGTLLPILLTEKRTDGLTWDFTSTVASPVEYVSRPPLRL*
soilL2_102230133	3300003319	Sugarcane Root And Bulk Soil	MTRHRHGHGSLLRGDVVALPHVGYWVVEQRNASVCTIGGQIRGDLRALESLNRAGQQLLLLLDTGTRLPIVLTGKGADGTWEFTSTASSPIGLADFTGRRV*
soilH2_102120365	3300003324	Sugarcane Root And Bulk Soil	MTRHRHGHGSLLRGEAVALPHVGYWVVEDRDGSSCAITGHVRGDVQVLAYLKRAGQQLLLILDNGTRLPIVLTAKSTDGVSWEFTSTEASPIEFVSRPPRRF*
Ga0062593_1000133983	3300004114	Soil	MTRHRHGHGQLLRGDAVALPHVGYWVVEDRDGVSCAIFGHVRGDVRVLASLNTGGQQLLLILENGTRLPIVLTEKRTDGSWEFTSTAASPIEFASRSTRRF*
Ga0062593_1001678783	3300004114	Soil	MWVSAISPEGRITRMTRHRHGHGSLLRGDLVALPHVGYWVVEQRNASVCTIGGKIRGDLHALESLNRAGQQLVLLLDSGTRLPIVLTEKGTDGMTWEFTSTASSPLEFVNFTPRGV*
Ga0062593_1003596701	3300004114	Soil	MWVSSISPEGRIQRMTRHRHGHGSLLRGDDVALAHVGYWIVEHRDALTCAISGHVRGDIRVLESLNRAGQQLALVLDNGTPLPILLTEKRRDGLTWEFISPSASPIEFASRLPLRF*
Ga0062590_1007054711	3300004157	Soil	MTRHRHGHGSLLRGDLVALPHVGYWVVEQRNASVCTIGGKIRGDLHALESLNRAGQQLVLLLDSGTRLPIVLTEKGTDGMTWEFTSTASSPLEFVNFTPRGV*
Ga0062592_1007170153	3300004480	Soil	LNRPSSMWVSTISPEGRIQRMTRHRHGHGSLHRGDATALPHVGYWIVEDRDASMCAISGYVRGDVRVLDSLNRTGQRLLLLLEDGARLPIVLTKKRTDDAWEFKSTVESPVELVSRPAS*
Ga0062592_1007949442	3300004480	Soil	LNRPSSMWVSTISPEGRIQRMTRHVTGHGSLHRGDATALPHVGYWIVEHRNASTCDISGYVRGDVSVLDSLNRTGQQLLLILDNGARLPIVLTEKRTDGSWEFKSTVASPLAFVRRASAF
Ga0058859_114158242	3300004798	Host-Associated	MTRHRHGHGSLHRGDATALPHVGYWIVEHRDAAMCAISGYVRGDVSVLDSLNRTGQQLLLILDNGARLPIVLTEKRTDGSWEFKSTVASPL
Ga0058859_115275332	3300004798	Host-Associated	MWVSSISPEGRIKRMTRHRHGHGALLRGDDVALAHVGYWIVEHRDALTCAISGHVRGDIRVLESLNRAGEQLALVLDNGTPLPILLTEKRRDGLTWEFISSMASPIEFV
Ga0062594_1001336363	3300005093	Soil	MTRHRHGHGSLHRGDATALPHVGYWIVEHRDAAMCAISGYVRGDVSVLDSLNRTGQQLLLILDNGARLPIVLTEKRTDGGWEFKATVASPIEFASRVTAF*
Ga0062594_1004607942	3300005093	Soil	MWVSSISPEGRIKRMTRHRHGHGSLRRGDDVALAHVGYWIVEHRDALTCDISGYVRGDIRVLESLNRAGQRLALVLDNGTPLPILLTEKRRDGLTWEFVSTAASPIEFVSRLPLNI*
Ga0068993_101724571	3300005183	Natural And Restored Wetlands	MTRHRHGHGALIRGDAIALPHVGYWIVEDRDASTCTISGYVRGDVKVLESLKRAAQQLVLMLENGAPLPILLTEKRTDGLTWEFTSTAASPIELVRRPAIRP*
Ga0065704_106926991	3300005289	Switchgrass Rhizosphere	RIQRMTRHRHGHGSLHRGDATALPHVGYWIVEHRDAAMCAISGYVRGDVSVLDSLNRTGQQLLLILDNGARLPIVLTEKRTDGGWEFKATVASPIEFASRVTAF*
Ga0065715_103751022	3300005293	Miscanthus Rhizosphere	MWVSTISPEGRIQRMTRHVTGHGSLHRGDATALPHVGYWIVEHRNASTCDISGYVRGDVSVLDSLNRTGQQLLLILDNGARLPIVLTEKRTDGSWEFKSTVASPLAFVRRASAF*
Ga0065707_102911973	3300005295	Switchgrass Rhizosphere	MWVSTISPEGRIQRMTRHRHGHGSLHRGDATALPHVGYWIVEHRDAAMCAISGYVRGDVSVLDSLNRTGQQLLLILDNGARLPIVLTEKRTDGGWEFKATVASPIEFASRVTAF*
Ga0066388_1002716143	3300005332	Tropical Forest Soil	MTRHRHGHGALLRGDDVALAHVGYWIVEHRDALTCAISGHVRGDIRVLESLNRAGEQLALVLDNGTPLPILLTEKRRDGLTWEFISPTASPIEFVSRRPLRL*
Ga0070680_1003342482	3300005336	Corn Rhizosphere	VGDLGAAGEKLMLVGTADDSGVTEWTLNRPSSMWVSTISPEGRIQRMTRHRHGHGSLHRGDATALPHVGYWIVEHRDAAMCAISGYVRGDVSVLDSLNRTGQQLLLILDNGARLPIVLTEKRTDGGWEFKATVASPIEFASRVTAF*
Ga0070660_1006511061	3300005339	Corn Rhizosphere	VGTADDSGVTEWTLNRPSSMWVSTISPEGRIQRMTRHVTGHGSLHRGDATALPHVGYWIVEHRDAAMCAISGYVRGDVSVLDSLNRTGQQLLLILDNGARLPIVLTEKRTDGGWEFKATVASPIEFASRVTAF*
Ga0070689_1001358183	3300005340	Switchgrass Rhizosphere	MWVSTISPEGRIQRMTRHVTGHGSLHRGDATALPHVGYWIVEHRNASTCDISGYVRGDVSVLDSLNRTGQQLLLILDNGARLPIVLTEKRTDGSWEFKSTVASPLAFVRRTSAF*
Ga0070692_111282421	3300005345	Corn, Switchgrass And Miscanthus Rhizosphere	RTLNRPSSMWVSSVTPEGRIQRMTRHRHGHGQLLRGDAVALPHVGYWVVEDRDGVSCAIFGHVRGDVRVLASLNTGGQQLLLILENGTRLPIVLTEKSTDGVTWEFTSTAESPVAFVGRPLRGL*
Ga0070688_1001866513	3300005365	Switchgrass Rhizosphere	MWVSSISPEGRIKRMTRHRHGHGSLRRGDDVALAHVGYWIVEHRDALTCDISGYVRGDIRVLESLNRAGQRLALVLDNGTPLPILLTEKRRDGLTWE
Ga0070701_104312101	3300005438	Corn, Switchgrass And Miscanthus Rhizosphere	MWVSTISPEGRIQRMTRHVTGHGSLHRGDATALPHVGYWIVEHRNASTCDISGYVRGDVSVLDSLNRTGQQLLLILDNGARLPIVLTEKRTDGSWEFKS
Ga0070705_1000920073	3300005440	Corn, Switchgrass And Miscanthus Rhizosphere	MWVSTISPEGRIQRMTRHVTGHGSLHRGDATALPHVGYWIVEHRDAAMCAISGYVRGDVSVLDSLNRTGQQLLLILDNGARLPIVLTEKRTDGGWEFKATVASPIEFASRVTAF*
Ga0070705_1005741463	3300005440	Corn, Switchgrass And Miscanthus Rhizosphere	MWVSSISPEGRIKRMTRHRHGHGSLRRGDDVALAHVGYWIVEHRDALTCDISGYVRGDIRVLESLNRAGQRLALVLDNGTPLPILLTEKRRDGLTWEFISSMASPIEFVSRRPLRL*
Ga0070700_1004626731	3300005441	Corn, Switchgrass And Miscanthus Rhizosphere	MWVSSISPEGRIKRMTRHRHGHGSLRRGDDVALAHVGYWIVEHRDALTCDVSGYVRGDIRVLESLNRAGQRLALVLDNGTPLPILLTEKRRDGLTWEFVSTAASPIEFVSRLPLNI*
Ga0070694_1007501412	3300005444	Corn, Switchgrass And Miscanthus Rhizosphere	MTRHRHGHGSLLRGDDVALAHVGYWLVEDRDALTCAISGYVRGDIRVLELLNRAGQQLALILDNGIPLPILLTEKRRDGLTWEFISPAASPLEFVSPPPLRL*
Ga0070685_101880563	3300005466	Switchgrass Rhizosphere	MTRHRHGHGSLHRGDATALPHVGYWIVEHRDAAMCAISGYVRGDVSVLDSLNRTGQQLLLILDNGARLPIVLTEKRTDGGWEFKATVAS
Ga0070707_1019094162	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	MWVSTISPEGRIQRMTRHRHGHGSLHRGDATALPHVGYWIVEHRDAAMCAISGYVRGDVRVLDSLNRTGQQLLLILDNGARLPIVLTEKRTDGGWEFKATVASPIEFASRVTAF*
Ga0070695_1006331822	3300005545	Corn, Switchgrass And Miscanthus Rhizosphere	MWVSTISPEGRIQRMTRHVTGHGSLHRGDATALPHVGYWIVEHRNASTCDISGYVRGDVSVLDSLNRTGQQLLLILDNGARLPIVLTEKRTDGGWEFKATVASPIEFASRVTAF*
Ga0070664_1001000833	3300005564	Corn Rhizosphere	MTRHVTGHGSLHRGDATALPHVGYWIVEHRNASTCDISGYVRGDVSVLDSLNRTGQQLLLILDNGARLPIVLTEKRTDGSWEFKSTVASPLAFVRRASAF*
Ga0068863_1001383721	3300005841	Switchgrass Rhizosphere	MTRHRHGHGALLRGDDVALAHVGYWIVEHRDALTCAISGHVRGDIRVLESLNRAGEQLALVLDNGTPLPILLTEKRRDGLTWEFISSMASPIEFVSRRPLRL*
Ga0068863_1013414891	3300005841	Switchgrass Rhizosphere	VTDQTLNRPFVMWVSTISPEGRIQRMTRHRHGHGSLLRGDDVALAHVGYWLVEDRDALTCAISGYVRGDIRVLELLNRAGQQLALILDNGSPLPILLTEKRRDGLTWEFISPAASPLELVSPPPLRL*
Ga0068858_1002515383	3300005842	Switchgrass Rhizosphere	MWVSTISPEGRIQRMTRHRHGHGSLHRGDATALPHVGYWIVEHRDAAMCAISGYVRGDVSVLDSLNRTGQQLLLILDNGARLPIVLTEKRTDGGWEFKSTVASPIEFASRVTAF*
Ga0068858_1005830151	3300005842	Switchgrass Rhizosphere	VTVQTLNRLSVMWVSSISPEGRIKRMTRHRHGHGSLRRGDDVALAHVGYWIVEHRDALTCDISGYVRGDIRVLESLNRAGQRLALVLDNGTPLPILLTEKRRDGLTWEFVSTAASPIEFVSRLPLNI*
Ga0075417_101488752	3300006049	Populus Rhizosphere	MWVSTITPEGRIQRMTRHRHGHGALIRGDAVALPHVGYWIVEDRDASTCVISGYVRGEVRVLESLNRAGQHLVLMLDDGTPLPILLTDRRTDGLTWDFTSTVASPIELVRRPANRL*
Ga0075432_105266362	3300006058	Populus Rhizosphere	MTRHRHGHGSLHRGDATALPHVGYWIVEHRDAAMCAISGYVRGDVSVLDSLNRTGQQLLLILDNGARLPIVLTEKRTDGSWEFKSTVASPLAFVRRGPAF*
Ga0068871_1000848094	3300006358	Miscanthus Rhizosphere	MWVSSISPEGRIKRMTRHRHGHGSLRRGDDVALAHVGYWIVEHRDALTCDISGYVRGDIRVLELLNRAGQQLALILDNGIPLPILLTEKRRDGLTWEFISPAASPLEFVSPPPLRL*
Ga0075428_1010582942	3300006844	Populus Rhizosphere	MWVSTISPEGRIQHMTRHRHGHGSLHRGDATALPHVGYWIVEHRDASLCAISGYVRGDVSVLDSLNRTGQQLLLILDNGARLPIVLTEKRTDGGWEFTSTVASPIEFVSRVTAF*
Ga0075428_1013796881	3300006844	Populus Rhizosphere	MTRHRHGHGSLLRGDAVALPHVGYWIVEQRSASICTIAGQVRGDVRVLDSLNRAGQQLLLILDNGTRLPIVLTEKSTDGLTWEFTSTAESPIEFVSRPLRGL*
Ga0075433_102606142	3300006852	Populus Rhizosphere	MWVSTITPEGRIQRMTRHRHGHGALIRGDAVALPHVGYWIVEDRDASTCVISGYVRGEVRVLESLNRAGQQLVLMLDDGTPLPILLTDRRTDGLTWDFTSTVASPIELVRRPANRL*
Ga0075425_1023772061	3300006854	Populus Rhizosphere	MTRHRHGHGSLLRGDAVALPHVGYWIVEQRNASNCTIEGYVRGDLQVLESLNRARQELVLILDNGTRLPIVLTEKGADGTTWEFTSTAGLPIEFVSRQ*
Ga0075434_1001702954	3300006871	Populus Rhizosphere	MWVSTISPEGRIQRMTRHRHGHGSLLRGDAVALPHVGYWIVEQRNASNCTIEGYVRGDLQVLESLNRARQELVLILDNGTRLPIVLTEKGADGTTWEFTSTAGLPIEFVSRQ*
Ga0075429_1007153193	3300006880	Populus Rhizosphere	MWVSTITPEGRIQRMTRHRHGHGALIRGDAVALPHVGYWIVEDRDASTCVISGYVRGEVRVLESLNRAGQQLVLMLDDGTPLPILLTDRRTDGLTWDFTSTVASPIELVRR
Ga0068865_1009901541	3300006881	Miscanthus Rhizosphere	LNGSRVTAQTLNRLSVMWVSSISPEGRIQRMTRHRHGHGSLLRGDDVALAHVGYWLVEDRDALTCAISGYVRGDIRVLELLNRAGQQLALILDNGIPLPILLTEKRRDGLTWEFISPAASPLEFVSPPPLRL*
Ga0075419_102155982	3300006969	Populus Rhizosphere	MWVSTISPEGRIQRMTRHRHGHGSLHRGDATALPHVGYWIVEHRDAAMCAISGYVRGDVSVLDSLNRTGQQLLLIRDNGARLPIVLTEKRTDGSWEFKSTVASPLAFVRRWPAF*
Ga0105240_122566241	3300009093	Corn Rhizosphere	LNRPSSMWVSSVTPEGRIQRMTRHRHGHGQLLRGDAVALPHVGYWVVEDRDGVSCAIFGHVRGDVRVLASLNTGGQQLLLILENGTRLPIVLTEKRTDGSWEFTSTAASPIEFASRSTRRF*
Ga0111539_102604132	3300009094	Populus Rhizosphere	MTRHHHGHGSLLRGDAVALPHVGYWIVEQRSASICTIAGQVRGDVHVLDSLNRAGQQLLLILDNGTRLPIVLTEKSTDGLTWEFTSTAESPIEFVSRPLRGL*
Ga0111539_107894373	3300009094	Populus Rhizosphere	SMWVSTISPEGRIQRMTRHVTGHGSLHRGDATALPHVGYWIVEHRNASTCDISGYVRGDVSVLDSLNRTGQQLLLILDNGARLPIVLTEKRTDGSWEFKSTVASPLAFVRRGPAF*
Ga0075418_101172262	3300009100	Populus Rhizosphere	MTRHRHGHGSLLRGDAVALPHVGYWIVEQRSASICTIAGQVRGDVHVLDSLNRAGQQLLLILDNGTRLPIVLTEKSTDGVTWEFTSTAESPIEFVSRPLRGL*
Ga0075418_105248641	3300009100	Populus Rhizosphere	RGDATALPHVGYWIVEHRDAAMCAISGYVRGDVSVLDSLNRTGQQLLLILDNGARLPIVLTEKRTDGGWEFKATVASPIEFASRVTAF*
Ga0075418_115563531	3300009100	Populus Rhizosphere	VTEQTLSRPSSMWVSTISPEGRIQHMTRHRHGHGSLHRGDATALPHVGYWIVEHRDASLCAISGYVRGDVSVLDSLNRTGQQLLLILDNGARLPIVLTEKRTDGGWEFTSTVASPIEFVSRVTAF*
Ga0114129_1003221110	3300009147	Populus Rhizosphere	MTRHRHGHGSLLRGDAVALPHVGYWIVEQRSASICTIAGQVRGDVRVLDSLNRAGQQLLLILDNGTRLPIVLTERSTDALTWEFTSTAESPLEFVSRPLRGL*
Ga0114129_101619374	3300009147	Populus Rhizosphere	LLRGDAVALPHVGYWIVEQRNASNCTIEGYVRGDLQVLESLNRARQELVLILDNGTRLPIVLTEKGADGTTWEFTSTAGLPIEFVSRQ*
Ga0111538_102941022	3300009156	Populus Rhizosphere	MTRHHHGHGSLLRGDAVALPHVGYWIVEQRSASICTIAGQVRGDVHVLDSLNRAGQQLLLILDNGTRLPIVLTEKSTDGVTWEFTSTAESPIEFVSRPLRGL*
Ga0075423_125694271	3300009162	Populus Rhizosphere	VTAQTLNRLSVMWVSSISPEGRIQRMTRHQHGHGSLRRGDDVALAHVGYWIVEHRDALTCDISGYVRGDIRVLESLNRAGQQLALVLDNGTPLPILLTEMRRDGLTWEFISPTASPIEFVSRLPLSGFER*
Ga0105242_105252882	3300009176	Miscanthus Rhizosphere	VTVQTLNRLSVMWVSSISPEGRIKRMTRHRHGHGALLRADDVALAHVGYWIVEDRDALTCAISGYVRGDIRVLESLNRAGQRLALVLDNGTPLPILLTEMRRDGLTWEFISPTASPIEFVSRLPLSGFER*
Ga0126382_100611733	3300010047	Tropical Forest Soil	MWVSTITPEGRIQRMTRHRHGHGALIRGDAVALPHVGYWIVEDRDASTCAISGYVRGDVKVLEPLKRAGQQLVLMLDDGTPLPILLTERRTDGLTWDFTSTVASPIEFVSRPPLRL*
Ga0126382_101500521	3300010047	Tropical Forest Soil	QRMTRHRHGHGSLLRGDDVALAHVGYWLVEDRDALTYAISGHVRGDIRVLELLNRAGQQLALVLENGTPLPILLTEKRRDGLTWEFISPAASPIEFVSPPPLRL*
Ga0126376_123567391	3300010359	Tropical Forest Soil	MTRHRHGHGALLRGDDVALAHVGYWIVEHRDALTCAISGHVRGDIRVLESLNRAGEQLALVLDNGTPLPILLTEKRRDGLTWEFVSPTASPIEF
Ga0126377_102499132	3300010362	Tropical Forest Soil	MWVSTISPEGRIQRMTRHRHGHGSLLRGDDVALAHVGYWLVEDRDALTCAISGHVRGDIRVLELLNRAGQQLALVLENGTPLPILLTEKRRDGLTWEFISPAASPIEFVSPPPLRL*
Ga0134127_121969961	3300010399	Terrestrial Soil	MWVSTISPEGRIQRMTRHVTGHGSLHRGDATALPHVGYWIVEHRNASTCDISGYVRGDVSVLDSLNRTGQQLLLILDNGARLPIVLTEKRTDGSWEFKSTVASPLAF
Ga0105246_101497231	3300011119	Miscanthus Rhizosphere	VTAQTLNRLSVMWVSSISPEGRIKRMTRHRHGHGALLRGDDVALAHVGYWIVEHRDALTCAISGHVRGDIRVLESLNRAGQRLALVLDNGTPLPILLTEKRRDGLTWEFVSTAASPIEFVSRLPLNI*
Ga0105246_104949791	3300011119	Miscanthus Rhizosphere	MWVSTISPEGRIQRMTRHRHGHGSLHRGDATALPHVGYWIVEHRDAAMCAISGYVRGDVSVLDSLNRTGQQLLLILDNGARLPIVLTEKRTDGSWEFKSTVASPLAFVRRASAF*
Ga0157324_10607711	3300012506	Arabidopsis Rhizosphere	MWVSTISPEGRIQRMTRHRHGHGSLFRGDAVALPHVGYWIVEQRIASVCTITGYVRGDVQVLESLNRAGQQLLLILDNGTRLPIVLTEKGTDGTTWEFTSHAASPIEFVGRPSRGL*
Ga0126375_105055011	3300012948	Tropical Forest Soil	PSAVTEWTLNRPSSMWVSTITPEGRIQRMTRHRHGHGALIRGDAVAIPHVGYWIVEDRDASTCAISGYVRGDVKVLEALNRAGQQLVLMLDDGTPLPILLTERRTDGLTWNFTSTVASPIESHPLYRSPAIRERAT*
Ga0157378_107837682	3300013297	Miscanthus Rhizosphere	VTVQTLNRLSVMWVSSISPEGRIKRMTRHRHGHGSLRRGDDVALAHVGYWIVEHRDALTCDISGYVRGDIRVLESLNRAGQRLALVLDNGTPLPILLTEMRRDGLTWEFISPTASPIEFVSRLPL*
Ga0157375_102759373	3300013308	Miscanthus Rhizosphere	VTAQTLNRLSVMWVSSISPEGRIKRMTRHRHGHGALLRGDDVALAHVGYWIVEHRDALTCDISGYVRGDIRVLESLNRAGQRLALVLDNGTPLPILLTEKRRDGLTWEFVSTAASPIEFVSRLPLNI*
Ga0075301_10190032	3300014262	Natural And Restored Wetlands	MWVSTITPEGRIQRMTRHRHGHGALIRGDAIALPHVGYWIVEDRDASTCTISGYVRGDVKVLESLKRAAQQLVLMLENGAPLPILLTEKRTDGLTWEFTSTAASPIELVRRPAIRP*
Ga0163163_105560862	3300014325	Switchgrass Rhizosphere	VTAQTLNRLSVMWVSSISPEGRIKRMTRHRHGHGALLRGDDVALAHVGYWIVEHRDALTCAISGHVRGDIRVLESLNRAGEQLALVLDNGTPLPILLTEKRRDGLTWEFISSMASPIEFVSRRPLRL*
Ga0157376_104558072	3300014969	Miscanthus Rhizosphere	MWVSSISPEGRIQRMTRHRHGHGSLLRGDDVALAHVGYWLVEDRDALTCAISGYVRGDIRVLELLNRAGQQLALILDNGIPLPILLTEKRRDGLTWEFISPAASPLEFVSPPPLRL*
Ga0173478_103052832	3300015201	Soil	VTELALSRPSSMWVSTISPEGRIQRMTRHRHGHGSLHRGDATALPHVGYWIVEDRDASMCAISGYVRGDVRVLDSLNRTGQRLLLLLEDGARLPIVLTKKRTDDAWEFKSTVESPVELVSRPAS*
Ga0132258_112443992	3300015371	Arabidopsis Rhizosphere	MWMSTVSPEGRIQRMTRHRHGHGALLRGGAVALPHVGYWIVEEREASSCAISGHVRGDVQVLASLNRAGQQLLLILDNGTRLPILLTEKRTDGVTWEFISTVASPIDFVSRTANRP*
Ga0132258_134280851	3300015371	Arabidopsis Rhizosphere	LGAACEKLILVGRLDRSRRVTEQTLNRPELMWVSTISPEGRIQHMTRHRHGHGALLRGDAIALPHVGYWVVEQRDASSCAISGHVRGDVLVLESLNRARHQLLLILDDGTRLPIVLTEKRTDGVTWEFTSTAASPIDFVSRTANRF*
Ga0132258_136061081	3300015371	Arabidopsis Rhizosphere	LNHSPVTEGSVNRPSSMWVSTISPEGRIQRMTRHRHGHGSLFRGDAVALPHVGYWIVEQRIASICTITGYVRGDVQVLESLNRAGQQLLLILDNGTRLPIVLTEKGTDGTTWEFTSHAASPIEFVGRPSRGL*
Ga0132258_139738663	3300015371	Arabidopsis Rhizosphere	MWVSSISPEGRIQRMTRHRHGHGALLRGDDVALAHVGYWIVEHRDASTCAISGHVRGDIRVLESLNRAGEQLALVLDNGTPLPILLTEKRRDGLTWEFISSMASPIEFVSRRPLRL*
Ga0132256_1003852081	3300015372	Arabidopsis Rhizosphere	NGSRVTAQTLKRLSVMWVSSISPEGRIQRMTRHRHGHGALLRGDDVALAHVGYWIVEHRDALTCAISGHVRGDIRVLESLNRAGEQLALVLDNGTPLPILLTEKRRDGLTWEFISSMASPIEFVSRRPLRL*
Ga0132256_1008905531	3300015372	Arabidopsis Rhizosphere	MWMSTVSPEGRIQRMTRHRHGHGALLRGDAVALPHVGYWIVEEREASSCAISGHVRGDVQVLASLNRAGQQLLLILDNGTRLPILLTEKRTDGVTWEFIATVASPIDFVSLTANRP*
Ga0132256_1034766741	3300015372	Arabidopsis Rhizosphere	TLNRPSSMWVSTISPEGRIQHMTRHRHGHGSLHRGDATALPHVGYWIVEHRDAAMCAISGYVRGDVSVLDSLNRTGQQLLLILDNGARLPIVLTEKRTDGGWEFKATVASPIEFASRVTAF*
Ga0132257_1000589564	3300015373	Arabidopsis Rhizosphere	LGATGETLISFDRLNHSPVTEGSVNRPSSMWVSTISPEGRIQRMTRHRHGHGSLFRGDAVALPHVGYWIVEQRIASICTITGYVRGDVQVLESLNRAGQQLLLILDNGTRLPIVLTEKGTDGTTWEFTSHAASPIEFVGRPSRGL*
Ga0132257_1000885843	3300015373	Arabidopsis Rhizosphere	MWMSTVSPEGRIQRMTRHRHGHGALLRGDAVALPHVGYWIVEEREASSCAISGHVRGDVQVLASLNRAGQQLLLILDNGTRLPILLTEKRTDGVTWEFISTVASPIDFVSLTANRP*
Ga0132257_1002022243	3300015373	Arabidopsis Rhizosphere	MWVSSISPEGRIQRMTRHRHGHGSLLRGDDVALAHVGYWLVEDRDALTCAISGYVRGDIRVLELLNRAGQQLALILDNGIPLPILLTEKRRDGLTWEFISPAVSPLEFVSPPPLRL*
Ga0132257_1003417793	3300015373	Arabidopsis Rhizosphere	MWVSSISPEGRIKRMTRHRHGHGALLRGDDVALAHVGYWIVEHRDALTCAISGHVRGDIRVLESLNRAGEQLALVLDNGTPLPILLTEKRRDGLTWEFISSMASPIEFVSRRPLRL*
Ga0132255_1001671931	3300015374	Arabidopsis Rhizosphere	VTAQTLNRLSVMWVSSISPEGRIQRMTRHRHGHGALLRGDDVALAHVGYWIVEHRDALTCAISGHVRGDIRVLESLNRAGEQLALVLDNGTPLPILLTEKRRDGLTWEFISSMASPIEFVSRRPLRL*
Ga0132255_1015907691	3300015374	Arabidopsis Rhizosphere	LGAACEKLILVGRLDRSRRVTEQTLNRPELMWVSTISPEGRIQHMTRHRHGHGALLRGDAIALPHVGYWVVEDRDGSSCAIFGHVRGDVQVLASLNRAGQQLLLILDNGTRLPIVLTEKRSDGSWEFTSTAASPIEFASRPTRRF*
Ga0207697_105628991	3300025315	Corn, Switchgrass And Miscanthus Rhizosphere	MTRHRHGHGSLHRGDATALPHVGYWIVEHRDAAMCAISGYVRGDVSVLDSLNRTGQQLLLILDNGARLPIVLTEKRTDGGWEFKATVASPIEFASRVTAF
Ga0207682_103725301	3300025893	Miscanthus Rhizosphere	MTRHRHGHGALLRGDDVALAHVGYWIVEHRDALTCAISGHVRGDIRVLESLNRAGEQLALVLDNGTPLPILLTEKRRDGLTWEFISSMASPIEFVSRRPLRL
Ga0207645_102389302	3300025907	Miscanthus Rhizosphere	MWVSTISPEGRIQRMTRHRHGHGSLHRGDATALPHVGYWIVEHRDAAMCAISGYVRGDVSVLDSLNRTGQQLLLILDNGARLPIVLTEKRTDGGWEFKATVASPIEFASRVTAF
Ga0207643_100057258	3300025908	Miscanthus Rhizosphere	MWVSTISPEGRIQRMTRHVTGHGSLHRGDATALPHVGYWIVEHRNASTCDISGYVRGDVSVLDSLNRTGQQLLLILDNGARLPIVLTEKRTDGSWEFKSTVASPLAFVRRASAF
Ga0207643_101268852	3300025908	Miscanthus Rhizosphere	MWVSSISPEGRIKRMTRHRHGHGSLRRGDDVALAHVGYWIVEHRDALTCDISGYVRGDIRVLESLNRAGQRLALVLDNGTPLPILLTEKRRDGLTWEFVSTAASPIEFVSRLPLNI
Ga0207650_104396312	3300025925	Switchgrass Rhizosphere	LMLVGTADDSGVTEWTLNRPSSMWVSTISPEGRIQRMTRHVTGHGSLHRGDATALPHVGYWIVEHRNASTCDISGYVRGDVSVLDSLNRTGQQLLLILDNGARLPIVLTEKRTDGSWEFKSTVASPLAFVRRASAF
Ga0207659_100017096	3300025926	Miscanthus Rhizosphere	MTRHRHGHGSLRRGDDVALAHVGYWIVEHRDALTCDISGYVRGDIRVLESLNRAGQRLALVLDNGTPLPILLTEKRRDGLTWEFVSTAASPIEFVSRLPLNI
Ga0207670_117663882	3300025936	Switchgrass Rhizosphere	GHGSLHRGDATALPHVGYWIVEHRNASTCDISGYVRGDVSVLDSLNRTGQQLLLILDNGARLPIVLTEKRTDGSWEFKSTVASPLAFVRRTSAF
Ga0207691_116728071	3300025940	Miscanthus Rhizosphere	VTEWTLNRPSSMWVSTISPEGRIQRMTRHVTGHGSLHRGDATALPHVGYWIVEHRNASTCDISGYVRGDVSVLDSLNRTGQQLLLILDNGARLPIVLTEKRTDGSWEFKSTVASPLAFVRRASAF
Ga0207661_119974621	3300025944	Corn Rhizosphere	MWVSTISPEGRIQRMTRHRHGHGSLHRGDATALPHVGYWIVEHRNASTCDISGYVRGDVSVLDSLNRTGQQLLLILDNGARLPIVLTEKRTDGSWEFK
Ga0207679_100418627	3300025945	Corn Rhizosphere	MTRHVTGHGSLHRGDATALPHVGYWIVEHRNASTCDISGYVRGDVSVLDSLNRTGQQLLLILDNGARLPIVLTEKRTDGSWEFKSTVASPLAFVRRASAF
Ga0207668_103654441	3300025972	Switchgrass Rhizosphere	MWVSTISPEGRIQRMTRHRHGHGSLHRGDATALPHVGYWIVEHRDAAMCAISGYVRGDVSVLDSLNRTGQQLLLILDNGARLPIVLTEKRTDGGWEFKPAAVSIGTGDGENRGVMVTELQESADP
Ga0207708_104068231	3300026075	Corn, Switchgrass And Miscanthus Rhizosphere	MTRHRHGHGSLLRGDDVALAHVGYWLVEDRDALTCAISGYVRGDIRVLELLNRAGQQLALILDNGIPLPILLTEKRRDGLTWEFISPAASPLEFVSPPPLRL
Ga0207641_111252861	3300026088	Switchgrass Rhizosphere	RVTAQTLNRLSDMWVSSISPEGRIQRMTRHRHGHGALLRGDDVALAHVGYWIVEHRDALTCAISGHVRGDIRVLESLNRAGEQLALVLDNGTPLPILLTEKRRDGLTWEFISSMASPIEFVSRRPLRL
Ga0207674_101100542	3300026116	Corn Rhizosphere	MWVSTISPEGRIQRMTRHRHGHGSLHRGDATALPHVGYWIVEHRDAAMCAISGYVRGDVSVLDSLNRTGQQLLLILDNGARLPIVLTEKRTDGSWEFKSTVASPLAFVRRASAF
Ga0207683_102896862	3300026121	Miscanthus Rhizosphere	VTVQTLNRLSVMWVSSISPEGRIKRMTRHRHGHGSLRRGDDVALAHVGYWIVEHRDALTCDISGYVRGDIRVLESLNRAGQRLALVLDNGTPLPILLTEKRRDGLTWEFVSTAASPIEFVSRLPLNI
Ga0209814_102605132	3300027873	Populus Rhizosphere	MWVSTITPEGRIQRMTRHRHGHGALIRGDAVALPHVGYWIVEDRDASTCVISGYVRGEVRVLESLNRAGQHLVLMLDDGTPLPILLTDRRTDGLTWDFTSTVASPIELVRRPANRL
Ga0207428_109541721	3300027907	Populus Rhizosphere	MTRHRHGHGSLHRGDATALPHVGYWIVEHRDASLCAISGYVRGDVSVLDSLNRTGQQLLLILDNGARLPIVLTEKRTDGGWEFTSTVASPIEFVSRVTAF
Ga0268265_125915271	3300028380	Switchgrass Rhizosphere	PEGRIKRMTRHRHGHGSLRRGDDVALAHVGYWIVEHRDALTCDISGYVRGDIRVLESLNRAGQRLALVLDNGTPLPILLTEKRRDGLTWEFVSTAASPIEFVSRLPLNI
Ga0310813_108940762	3300031716	Soil	MWVSSISPEGRIKRMTRHRHGHGSLRRGDDVALAHVGYWIVEHRDALTCDISGYVRGDIRVLESLNRAGQRLALVLDNGTPLPILLTEKRRDGLTWEFVSTTASPIEFVSRLPLNI
Ga0310899_100818191	3300032017	Soil	MWVSTISPEGRIQRMTRHRHGHGSLHRGDATALPHVGYWIVEHRDAAMCAISGYVRGDVSVLDSLNRTGQQLLLILDNGARLPIVLTEKRTDGGWEFKATVAS
Ga0310895_102429901	3300032122	Soil	MTRHRHGHGSLLRGDDVALAHVGYWLVEDRDALTCAISGYVRGDIRVLELLNRAGQQLALILDNGIPLPILLTEKRRDGLTWEFISPAASPLEFVSP
Ga0307471_1026927252	3300032180	Hardwood Forest Soil	MTRHRHGHGALIRGDAVALPHVGYWIVEDRDASTCVISGYVRGEVRVLESLNRAGQQLVLMLDDGTPLPILLTDRRTDGLTWDFTSTVASPIELVRRPAIRP
Ga0310810_104492603	3300033412	Soil	MTRHRHGHGSLRRGDDVALAHVGYWIVEHRDALTCDISGYVRGDIRVLESLNRAGQRLALVLDNGTPLPILLTEKRRDGLTWEFISPSASPIEFASRLPLRF
Ga0314788_157463_2_292	3300034666	Soil	MWVSSISPEGRIQRMTRHRHGHGSLLRGDDVALAHVGYWLVEDRDALTCAISGYVRGDIRVLELLNRAGQQLALILDNGIPLPILLTEKRRDGLTWE
Ga0314795_062539_56_406	3300034670	Soil	MWVSSISPEGRIQRMTRHRHGHGSLLRGDDVALAHVGYWLVEDRDALTCAISGYVRGDIRVLELLNRAGQQLALILDNGIPLPILLTEKRRDGLTWEFISPAASPLEFVSPPPLRL
Ga0314795_088539_2_322	3300034670	Soil	MWVSTISPEGRIQHMTRHRHGHGSLHRGDATALPHVGYWIVEHRDAAMCAISGHVRGDVSVLDSLNRTGQQLLLILDNGARLPIVLTEKRTDGGWEFKATVASPIEF

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F071288

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Structural matches with SCOPe domains

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences