NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Metagenome / Metatranscriptome Family F071005

Metagenome / Metatranscriptome Family F071005

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
Select file to download:
   Download


Overview

Basic Information
Family ID F071005
Family Type Metagenome / Metatranscriptome
Number of Sequences 122
Average Sequence Length 40 residues
Representative Sequence MADALERLKILLSSSTPIVVMETVEEMRAVRLVRAA
Number of Associated Samples 109
Number of Associated Scaffolds 122

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 30.83 %
% of genes near scaffold ends (potentially truncated) 92.62 %
% of genes from short scaffolds (< 2000 bps) 85.25 %
Associated GOLD sequencing projects 108
AlphaFold2 3D model prediction Yes
3D model pTM-score0.37

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
Powered by Skylign

Most Common Taxonomy
Group Bacteria (92.623 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil
(13.934 % of family members)
Environment Ontology (ENVO) Unclassified
(27.049 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
(44.262 % of family members)


 ⦗Top⦘

Multiple Sequence Alignments

Select alignment to view:      

 ⦗Top⦘

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 35.94%    β-sheet: 0.00%    Coil/Unstructured: 64.06%
Feature Viewer
Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  		pTM-score: 0.37
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

 ⦗Top⦘

Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 122 Family Scaffolds
PF01649Ribosomal_S20p 53.28
PF01966HD 4.92
PF13487HD_5 4.92
PF00797Acetyltransf_2 4.10
PF04140ICMT 3.28
PF07992Pyr_redox_2 2.46
PF03681Obsolete Pfam Family 1.64
PF07394DUF1501 1.64
PF02562PhoH 0.82
PF13432TPR_16 0.82
PF02852Pyr_redox_dim 0.82
PF01734Patatin 0.82
PF00034Cytochrom_C 0.82
PF07498Rho_N 0.82
PF00578AhpC-TSA 0.82
PF15919HicB_lk_antitox 0.82
PF03054tRNA_Me_trans 0.82
PF14870PSII_BNR 0.82
PF13620CarboxypepD_reg 0.82
PF02224Cytidylate_kin 0.82
PF01408GFO_IDH_MocA 0.82
PF02265S1-P1_nuclease 0.82
PF07731Cu-oxidase_2 0.82
PF00044Gp_dh_N 0.82
PF09720Unstab_antitox 0.82
PF06144DNA_pol3_delta 0.82
PF00069Pkinase 0.82
PF07690MFS_1 0.82
PF11954DUF3471 0.82
PF04390LptE 0.82

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 122 Family Scaffolds
COG0268Ribosomal protein S20Translation, ribosomal structure and biogenesis [J] 53.28
COG2162Arylamine N-acetyltransferaseSecondary metabolites biosynthesis, transport and catabolism [Q] 4.10
COG0515Serine/threonine protein kinaseSignal transduction mechanisms [T] 3.28
COG0057Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenaseCarbohydrate transport and metabolism [G] 0.82
COG0283Cytidylate kinaseNucleotide transport and metabolism [F] 0.82
COG0482tRNA U34 2-thiouridine synthase MnmA/TrmU, contains the PP-loop ATPase domainTranslation, ribosomal structure and biogenesis [J] 0.82
COG1466DNA polymerase III, delta subunitReplication, recombination and repair [L] 0.82
COG1702Phosphate starvation-inducible protein PhoH, predicted ATPaseSignal transduction mechanisms [T] 0.82
COG1752Predicted acylesterase/phospholipase RssA, containd patatin domainGeneral function prediction only [R] 0.82
COG1875Predicted ribonuclease YlaK, contains NYN-type RNase and PhoH-family ATPase domainsGeneral function prediction only [R] 0.82
COG2132Multicopper oxidase with three cupredoxin domains (includes cell division protein FtsP and spore coat protein CotA)Cell cycle control, cell division, chromosome partitioning [D] 0.82
COG2812DNA polymerase III, gamma/tau subunitsReplication, recombination and repair [L] 0.82
COG2980Outer membrane lipoprotein LptE/RlpB (LPS assembly)Cell wall/membrane/envelope biogenesis [M] 0.82
COG3621Patatin-like phospholipase/acyl hydrolase, includes sporulation protein CotRGeneral function prediction only [R] 0.82
COG4667Predicted phospholipase, patatin/cPLA2 familyLipid transport and metabolism [I] 0.82

 ⦗Top⦘

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
All OrganismsrootAll Organisms92.62 %
UnclassifiedrootN/A7.38 %

Visualization
Powered by ApexCharts

Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300003219|JGI26341J46601_10186909All Organisms → cellular organisms → Bacteria566Open in IMG/M
3300005436|Ga0070713_100179610All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1901Open in IMG/M
3300005439|Ga0070711_100706525All Organisms → cellular organisms → Bacteria849Open in IMG/M
3300005537|Ga0070730_10426882All Organisms → cellular organisms → Bacteria856Open in IMG/M
3300005555|Ga0066692_11036954All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria502Open in IMG/M
3300005587|Ga0066654_10237041All Organisms → cellular organisms → Bacteria959Open in IMG/M
3300005587|Ga0066654_10334016All Organisms → cellular organisms → Bacteria821Open in IMG/M
3300005616|Ga0068852_100508069All Organisms → cellular organisms → Bacteria → Acidobacteria1201Open in IMG/M
3300005921|Ga0070766_10798675All Organisms → cellular organisms → Bacteria643Open in IMG/M
3300005993|Ga0080027_10040657All Organisms → cellular organisms → Bacteria1671Open in IMG/M
3300006047|Ga0075024_100729797Not Available547Open in IMG/M
3300006052|Ga0075029_100275850All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia1067Open in IMG/M
3300006102|Ga0075015_100406242All Organisms → cellular organisms → Bacteria769Open in IMG/M
3300006804|Ga0079221_10657861All Organisms → cellular organisms → Bacteria720Open in IMG/M
3300006854|Ga0075425_100047107All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae4819Open in IMG/M
3300006893|Ga0073928_10442400All Organisms → cellular organisms → Bacteria942Open in IMG/M
3300006893|Ga0073928_11192338Not Available513Open in IMG/M
3300009038|Ga0099829_11435981All Organisms → cellular organisms → Bacteria570Open in IMG/M
3300009094|Ga0111539_13082983All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium538Open in IMG/M
3300009665|Ga0116135_1336501All Organisms → cellular organisms → Bacteria602Open in IMG/M
3300009665|Ga0116135_1465850All Organisms → cellular organisms → Bacteria520Open in IMG/M
3300010046|Ga0126384_11076544All Organisms → cellular organisms → Bacteria736Open in IMG/M
3300010303|Ga0134082_10464097All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium549Open in IMG/M
3300010361|Ga0126378_11981121All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium663Open in IMG/M
3300010375|Ga0105239_10668965All Organisms → cellular organisms → Bacteria1186Open in IMG/M
3300010376|Ga0126381_103858758Not Available585Open in IMG/M
3300010398|Ga0126383_10719032All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Angelobacter → unclassified Candidatus Angelobacter → Candidatus Angelobacter sp. Gp1-AA1171078Open in IMG/M
3300010399|Ga0134127_10010971All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae6747Open in IMG/M
3300011270|Ga0137391_10130583All Organisms → cellular organisms → Bacteria2184Open in IMG/M
3300011271|Ga0137393_10996029All Organisms → cellular organisms → Bacteria714Open in IMG/M
3300012198|Ga0137364_11079176All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium605Open in IMG/M
3300012203|Ga0137399_11086047All Organisms → cellular organisms → Bacteria674Open in IMG/M
3300012206|Ga0137380_10029794All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae5031Open in IMG/M
3300012354|Ga0137366_10025159All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis4632Open in IMG/M
3300012357|Ga0137384_10801027All Organisms → cellular organisms → Bacteria762Open in IMG/M
3300012359|Ga0137385_10645865All Organisms → cellular organisms → Bacteria887Open in IMG/M
3300012361|Ga0137360_10683347All Organisms → cellular organisms → Bacteria881Open in IMG/M
3300012925|Ga0137419_11871863All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium514Open in IMG/M
3300012944|Ga0137410_10454123All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae1041Open in IMG/M
3300012958|Ga0164299_11054679All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium604Open in IMG/M
3300012960|Ga0164301_10220806All Organisms → cellular organisms → Bacteria1224Open in IMG/M
3300012960|Ga0164301_10679199All Organisms → cellular organisms → Bacteria772Open in IMG/M
3300012961|Ga0164302_10775149Not Available720Open in IMG/M
3300012961|Ga0164302_11554663All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium548Open in IMG/M
3300012961|Ga0164302_11902430All Organisms → cellular organisms → Bacteria506Open in IMG/M
3300012986|Ga0164304_10193854All Organisms → cellular organisms → Bacteria1321Open in IMG/M
3300013307|Ga0157372_10028555All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis6089Open in IMG/M
3300015241|Ga0137418_10990393All Organisms → cellular organisms → Bacteria609Open in IMG/M
3300015357|Ga0134072_10376936All Organisms → cellular organisms → Bacteria552Open in IMG/M
3300016422|Ga0182039_12074136All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium524Open in IMG/M
3300016445|Ga0182038_11765229All Organisms → cellular organisms → Bacteria558Open in IMG/M
3300016702|Ga0181511_1433729All Organisms → cellular organisms → Bacteria671Open in IMG/M
3300017659|Ga0134083_10591098All Organisms → cellular organisms → Bacteria506Open in IMG/M
3300017823|Ga0187818_10207850All Organisms → cellular organisms → Bacteria855Open in IMG/M
3300017927|Ga0187824_10082126All Organisms → cellular organisms → Bacteria1023Open in IMG/M
3300017930|Ga0187825_10329376All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium574Open in IMG/M
3300017936|Ga0187821_10465451All Organisms → cellular organisms → Bacteria526Open in IMG/M
3300017995|Ga0187816_10331966All Organisms → cellular organisms → Bacteria670Open in IMG/M
3300017999|Ga0187767_10242092All Organisms → cellular organisms → Bacteria590Open in IMG/M
3300018007|Ga0187805_10090167All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae1385Open in IMG/M
3300018085|Ga0187772_10013899All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae4460Open in IMG/M
3300018468|Ga0066662_11199846Not Available768Open in IMG/M
3300019361|Ga0173482_10174920All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium858Open in IMG/M
3300019789|Ga0137408_1235604All Organisms → cellular organisms → Bacteria → Acidobacteria525Open in IMG/M
3300019877|Ga0193722_1046813All Organisms → cellular organisms → Bacteria1100Open in IMG/M
3300020006|Ga0193735_1055683All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis1167Open in IMG/M
3300020010|Ga0193749_1035599All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium965Open in IMG/M
3300020021|Ga0193726_1238017All Organisms → cellular organisms → Bacteria745Open in IMG/M
3300020579|Ga0210407_11026967All Organisms → cellular organisms → Bacteria628Open in IMG/M
3300020579|Ga0210407_11317174All Organisms → cellular organisms → Bacteria539Open in IMG/M
3300020581|Ga0210399_10144001All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae1969Open in IMG/M
3300020583|Ga0210401_10963145All Organisms → cellular organisms → Bacteria712Open in IMG/M
3300021171|Ga0210405_10648600All Organisms → cellular organisms → Bacteria819Open in IMG/M
3300021181|Ga0210388_10570661All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae991Open in IMG/M
3300021404|Ga0210389_11301944All Organisms → cellular organisms → Bacteria557Open in IMG/M
3300021405|Ga0210387_11462509All Organisms → cellular organisms → Bacteria586Open in IMG/M
3300021433|Ga0210391_10323412All Organisms → cellular organisms → Bacteria1210Open in IMG/M
3300021433|Ga0210391_11084091All Organisms → cellular organisms → Bacteria622Open in IMG/M
3300021474|Ga0210390_10000001All Organisms → cellular organisms → Bacteria → Acidobacteria1088388Open in IMG/M
3300021474|Ga0210390_10055906All Organisms → cellular organisms → Bacteria → Acidobacteria3249Open in IMG/M
3300021478|Ga0210402_10436612All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae1216Open in IMG/M
3300025913|Ga0207695_10714376All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium883Open in IMG/M
3300025921|Ga0207652_10521448All Organisms → cellular organisms → Bacteria1069Open in IMG/M
3300025923|Ga0207681_11178843All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium643Open in IMG/M
3300025929|Ga0207664_10004851All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis9146Open in IMG/M
3300025929|Ga0207664_11437283All Organisms → cellular organisms → Bacteria611Open in IMG/M
3300025942|Ga0207689_10869262All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium761Open in IMG/M
3300026095|Ga0207676_11071544All Organisms → cellular organisms → Bacteria796Open in IMG/M
3300026116|Ga0207674_12173833All Organisms → cellular organisms → Bacteria → Acidobacteria518Open in IMG/M
3300026118|Ga0207675_100078916All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae3085Open in IMG/M
3300026118|Ga0207675_102507413All Organisms → cellular organisms → Bacteria526Open in IMG/M
3300026317|Ga0209154_1186658All Organisms → cellular organisms → Bacteria818Open in IMG/M
3300026323|Ga0209472_1267160All Organisms → cellular organisms → Bacteria → Acidobacteria545Open in IMG/M
3300026514|Ga0257168_1149743All Organisms → cellular organisms → Bacteria520Open in IMG/M
3300027080|Ga0208237_1032380All Organisms → cellular organisms → Bacteria789Open in IMG/M
3300027376|Ga0209004_1069668All Organisms → cellular organisms → Bacteria594Open in IMG/M
3300027521|Ga0209524_1082787All Organisms → cellular organisms → Bacteria675Open in IMG/M
3300027545|Ga0209008_1050520All Organisms → cellular organisms → Bacteria947Open in IMG/M
3300027562|Ga0209735_1104806All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium616Open in IMG/M
3300027884|Ga0209275_10040088All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae2205Open in IMG/M
3300027894|Ga0209068_10379490All Organisms → cellular organisms → Bacteria804Open in IMG/M
3300027911|Ga0209698_10033781All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis4650Open in IMG/M
3300027911|Ga0209698_10080372All Organisms → cellular organisms → Bacteria2766Open in IMG/M
3300030057|Ga0302176_10013736All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae3051Open in IMG/M
3300031128|Ga0170823_14445041All Organisms → cellular organisms → Bacteria737Open in IMG/M
3300031715|Ga0307476_10549251All Organisms → cellular organisms → Bacteria856Open in IMG/M
3300031718|Ga0307474_11190889All Organisms → cellular organisms → Bacteria602Open in IMG/M
3300031718|Ga0307474_11269905All Organisms → cellular organisms → Bacteria581Open in IMG/M
3300031833|Ga0310917_10889379All Organisms → cellular organisms → Bacteria599Open in IMG/M
3300031962|Ga0307479_10018435All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis6571Open in IMG/M
3300032089|Ga0318525_10734355All Organisms → cellular organisms → Bacteria502Open in IMG/M
3300032205|Ga0307472_102385996All Organisms → cellular organisms → Bacteria536Open in IMG/M
3300032261|Ga0306920_102196758All Organisms → cellular organisms → Bacteria767Open in IMG/M
3300032770|Ga0335085_10334899Not Available1779Open in IMG/M
3300032805|Ga0335078_10989856All Organisms → cellular organisms → Bacteria997Open in IMG/M
3300032828|Ga0335080_10692588All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae1063Open in IMG/M
3300032829|Ga0335070_10332003Not Available1467Open in IMG/M
3300032954|Ga0335083_11061649All Organisms → cellular organisms → Bacteria634Open in IMG/M
3300033289|Ga0310914_11154030All Organisms → cellular organisms → Bacteria676Open in IMG/M
3300033755|Ga0371489_0126407All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium1436Open in IMG/M


 ⦗Top⦘

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil13.93%
Vadose Zone SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil11.48%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil9.84%
Freshwater SedimentEnvironmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment4.92%
WatershedsEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds4.92%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Soil4.92%
Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil4.92%
Hardwood Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil4.10%
SoilEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Soil4.10%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil3.28%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil2.46%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil2.46%
Switchgrass RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere2.46%
PeatlandEnvironmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland1.64%
Iron-Sulfur Acid SpringEnvironmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring1.64%
Tropical PeatlandEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland1.64%
SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Soil1.64%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere1.64%
Agricultural SoilEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil1.64%
Corn RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere1.64%
Populus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere1.64%
Corn RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere1.64%
PeatlandEnvironmental → Aquatic → Freshwater → Wetlands → Bog → Peatland0.82%
Bog Forest SoilEnvironmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil0.82%
Terrestrial SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil0.82%
Surface SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil0.82%
Agricultural SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil0.82%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil0.82%
Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil0.82%
Prmafrost SoilEnvironmental → Terrestrial → Soil → Wetlands → Permafrost → Prmafrost Soil0.82%
Corn RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere0.82%
PalsaEnvironmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa0.82%
Peat SoilEnvironmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil0.82%
Miscanthus RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere0.82%
Corn RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere0.82%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere0.82%

Visualization
Powered by ApexCharts



Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
3300003219Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM3EnvironmentalOpen in IMG/M
3300005436Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaGEnvironmentalOpen in IMG/M
3300005439Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaGEnvironmentalOpen in IMG/M
3300005537Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen01_05102014_R1EnvironmentalOpen in IMG/M
3300005555Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_141EnvironmentalOpen in IMG/M
3300005587Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_103EnvironmentalOpen in IMG/M
3300005616Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2Host-AssociatedOpen in IMG/M
3300005921Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6EnvironmentalOpen in IMG/M
3300005993Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 1 DNA2013-046EnvironmentalOpen in IMG/M
3300006047Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2013EnvironmentalOpen in IMG/M
3300006052Freshwater sediment microbial communities from North America - Little Laurel Run_MetaG_LLR_2013EnvironmentalOpen in IMG/M
3300006102Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2013EnvironmentalOpen in IMG/M
3300006804Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS200EnvironmentalOpen in IMG/M
3300006854Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4Host-AssociatedOpen in IMG/M
3300006893Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPA 5.5 metaGEnvironmentalOpen in IMG/M
3300009038Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaGEnvironmentalOpen in IMG/M
3300009094Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)Host-AssociatedOpen in IMG/M
3300009665Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_20_10EnvironmentalOpen in IMG/M
3300010046Tropical forest soil microbial communities from Panama - MetaG Plot_36EnvironmentalOpen in IMG/M
3300010303Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_09182015EnvironmentalOpen in IMG/M
3300010361Tropical forest soil microbial communities from Panama - MetaG Plot_23EnvironmentalOpen in IMG/M
3300010375Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaGHost-AssociatedOpen in IMG/M
3300010376Tropical forest soil microbial communities from Panama - MetaG Plot_28EnvironmentalOpen in IMG/M
3300010398Tropical forest soil microbial communities from Panama - MetaG Plot_35EnvironmentalOpen in IMG/M
3300010399Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3EnvironmentalOpen in IMG/M
3300011270Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4B metaGEnvironmentalOpen in IMG/M
3300011271Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4B metaGEnvironmentalOpen in IMG/M
3300012198Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_20_16 metaGEnvironmentalOpen in IMG/M
3300012203Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaGEnvironmentalOpen in IMG/M
3300012206Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_100_16 metaGEnvironmentalOpen in IMG/M
3300012354Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_60_16 metaGEnvironmentalOpen in IMG/M
3300012357Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_60_16 metaGEnvironmentalOpen in IMG/M
3300012359Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_80_16 metaGEnvironmentalOpen in IMG/M
3300012361Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaGEnvironmentalOpen in IMG/M
3300012925Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300012944Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300012958Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_221_MGEnvironmentalOpen in IMG/M
3300012960Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MGEnvironmentalOpen in IMG/M
3300012961Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_202_MGEnvironmentalOpen in IMG/M
3300012986Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_217_MGEnvironmentalOpen in IMG/M
3300013307Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaGHost-AssociatedOpen in IMG/M
3300015241Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Hybrid Assembly)EnvironmentalOpen in IMG/M
3300015357Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_20cm_5_0_1 metaGEnvironmentalOpen in IMG/M
3300016422Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111EnvironmentalOpen in IMG/M
3300016445Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108EnvironmentalOpen in IMG/M
3300016702Metatranscriptome of peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin11_30_metaT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300017659Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_40cm_5_24_1 metaGEnvironmentalOpen in IMG/M
3300017823Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_3EnvironmentalOpen in IMG/M
3300017927Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SourceSoil_4EnvironmentalOpen in IMG/M
3300017930Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SourceSoil_5EnvironmentalOpen in IMG/M
3300017936Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SourceSoil_1EnvironmentalOpen in IMG/M
3300017995Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_1EnvironmentalOpen in IMG/M
3300017999Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP10_10_MGEnvironmentalOpen in IMG/M
3300018007Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_5EnvironmentalOpen in IMG/M
3300018085Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP15_20_MGEnvironmentalOpen in IMG/M
3300018468Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111EnvironmentalOpen in IMG/M
3300019361Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S133-311R-2 (version 2)EnvironmentalOpen in IMG/M
3300019789Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (PacBio error correction)EnvironmentalOpen in IMG/M
3300019877Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2m1EnvironmentalOpen in IMG/M
3300020006Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1m2EnvironmentalOpen in IMG/M
3300020010Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L1s2EnvironmentalOpen in IMG/M
3300020021Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2c1EnvironmentalOpen in IMG/M
3300020579Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-MEnvironmentalOpen in IMG/M
3300020581Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-MEnvironmentalOpen in IMG/M
3300020583Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-MEnvironmentalOpen in IMG/M
3300021171Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-MEnvironmentalOpen in IMG/M
3300021181Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-OEnvironmentalOpen in IMG/M
3300021404Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-OEnvironmentalOpen in IMG/M
3300021405Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-OEnvironmentalOpen in IMG/M
3300021433Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-OEnvironmentalOpen in IMG/M
3300021474Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-OEnvironmentalOpen in IMG/M
3300021478Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-MEnvironmentalOpen in IMG/M
3300025913Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025921Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025923Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025929Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025942Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300026095Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300026116Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300026118Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300026317Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_121 (SPAdes)EnvironmentalOpen in IMG/M
3300026323Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_130 (SPAdes)EnvironmentalOpen in IMG/M
3300026325Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_107 (SPAdes)EnvironmentalOpen in IMG/M
3300026514Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DL-13-BEnvironmentalOpen in IMG/M
3300027080Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF009 (SPAdes)EnvironmentalOpen in IMG/M
3300027376Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_RefH0_M1 (SPAdes)EnvironmentalOpen in IMG/M
3300027439Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM3_M1 (SPAdes)EnvironmentalOpen in IMG/M
3300027521Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM1H0_M1 (SPAdes)EnvironmentalOpen in IMG/M
3300027545Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O3 (SPAdes)EnvironmentalOpen in IMG/M
3300027562Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_M2 (SPAdes)EnvironmentalOpen in IMG/M
3300027884Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2 (SPAdes)EnvironmentalOpen in IMG/M
3300027894Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2012 (SPAdes)EnvironmentalOpen in IMG/M
3300027911Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2012 (SPAdes)EnvironmentalOpen in IMG/M
3300030057Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_E1_1EnvironmentalOpen in IMG/M
3300031128Oak Summer Coassembly Site 11 - Champenoux / Amance forestEnvironmentalOpen in IMG/M
3300031715Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_05EnvironmentalOpen in IMG/M
3300031718Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05EnvironmentalOpen in IMG/M
3300031833Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF178EnvironmentalOpen in IMG/M
3300031962Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515EnvironmentalOpen in IMG/M
3300032089Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f23EnvironmentalOpen in IMG/M
3300032205Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05EnvironmentalOpen in IMG/M
3300032261Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)EnvironmentalOpen in IMG/M
3300032770Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.5EnvironmentalOpen in IMG/M
3300032805Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.2EnvironmentalOpen in IMG/M
3300032828Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.4EnvironmentalOpen in IMG/M
3300032829Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.3EnvironmentalOpen in IMG/M
3300032954Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.2EnvironmentalOpen in IMG/M
3300033289Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN108EnvironmentalOpen in IMG/M
3300033755Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB26FY SIP fractionEnvironmentalOpen in IMG/M

Geographical Distribution
Zoom:     Powered by OpenStreetMap


 ⦗Top⦘

Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
JGI26341J46601_1018690923300003219Bog Forest SoilMTDGLDRLKVLINSSTPIIVMETSEETHAVNLVRAACTELSMA
Ga0070713_10017961013300005436Corn, Switchgrass And Miscanthus RhizosphereVLTGQTDMDKVLDRLKVLIDSSTPIVVMETVEESRAVRMVRLACS
Ga0070711_10070652533300005439Corn, Switchgrass And Miscanthus RhizosphereMPDVLDRLKILLNSSTPIVVMETVEEMRAVRLVRVACSSLNLATFEWS
Ga0070730_1042688213300005537Surface SoilVPDGLDRLKILIDSSTPIVVMETVEEVRAVRMVRAACSSLNLA
Ga0066692_1103695423300005555SoilMPDVLERIKVLIDSSTPIVVIETVEEMRAVRLVRAAS
Ga0066654_1023704133300005587SoilMPDVLERLKVLIDSSTPIIVMETIEEMRAVRLVRAAS
Ga0066654_1033401613300005587SoilMVNTLDRLKILINSSTPIVVMETVEEMRAIGLVRAA
Ga0068852_10050806923300005616Corn RhizosphereMADVLERLKILIDSSTPIIVVETVEETRAVQLVRE
Ga0070766_1079867523300005921SoilMAWPAIPDPLARLKVLLDSSTPIVVMETIEETRAVRLVRAACAALNL
Ga0080027_1004065733300005993Prmafrost SoilMAIPSIADALQRLKTLIDSSTPIVVMETVEEMRAVRMVRSA
Ga0075024_10072979713300006047WatershedsMAEPQKKDGCSGKVLIDSSTPIVVIETVEELRRSYGAR*
Ga0075029_10027585013300006052WatershedsMAEPQKKDALQRLKVLIDSSTPIVVIETVEELRRSYGAR*
Ga0075015_10040624213300006102WatershedsMSDGLDRLKVLINSSTPIVVMETSEEMRAVNMVRS
Ga0079221_1065786123300006804Agricultural SoilMPDGLDRLKVLINSSTPIIVMETSEEMRAVSLVRAA
Ga0075425_10004710773300006854Populus RhizosphereMADTLERLKILLSSSTPIVVMETVEEMRAVRLVRA
Ga0073928_1044240033300006893Iron-Sulfur Acid SpringMTDGLDRLKVLINSSTPIIVMETSEEMHAIGLVRAACAELKMA
Ga0073928_1119233813300006893Iron-Sulfur Acid SpringMATVSRMTDGLDRLKVLINSSTPIIVMETPEETHA
Ga0099829_1143598113300009038Vadose Zone SoilMSDALERLKILLSSSTPIVVMETVEEMRAVRLVRAACSSLNLA
Ga0111539_1308298313300009094Populus RhizosphereMADVLERLKILIDSSTPIIVVETVEETRAVQLVREASSG
Ga0116135_133650113300009665PeatlandMAGPLTADALQRLKILIDSSTPIIAMETVEEVRAVRMVRAACASLNL
Ga0116135_146585013300009665PeatlandMAWPLIPDPLARLKVLLDSSTPIVAIETVEEVRAVRLVRAACASLNL
Ga0126384_1107654413300010046Tropical Forest SoilMPDGLDRLKVLINSSTPIVVMETSEEMRAVSLVRA
Ga0134082_1046409713300010303Grasslands SoilMADVLERLKILIDSSTPIVVMETVEEMRAVRLVREASSSLRLVA
Ga0126378_1198112113300010361Tropical Forest SoilMADVRDRLKILIDSSTPIVVMETAEEMRAVRLVREAAASLN
Ga0105239_1066896533300010375Corn RhizosphereMPDALERLKILLSSSTPIVVMETVEEMRAVRLVRAACSSLNLAT
Ga0126381_10385875823300010376Tropical Forest SoilMVDPLARLKILISSSTPVVVIETVEETRAVRLIRSAAD
Ga0126383_1071903213300010398Tropical Forest SoilMTNPSERLKILLNSSTPIVILETVEELRVIRMVRFVCA
Ga0134127_1001097113300010399Terrestrial SoilMADVLERLKILIDSSTPIIVMETVEEMRAVQLVREAAAPL
Ga0137391_1013058333300011270Vadose Zone SoilMADVLDRLKVLIDSSTPIIVMETVEETRAVRLVRAASS
Ga0137393_1099602913300011271Vadose Zone SoilMADALERLKILLNSSTPIVVMETVEEMRAVRLVRVACSSLNLATF
Ga0137364_1107917613300012198Vadose Zone SoilMPDVLDRLKILIDSSTPIVVMETVEEMRAVRLVREASSSLRLVAF
Ga0137399_1108604733300012203Vadose Zone SoilMPDALERLKILLSSSTPIVVMETVEEVRAVRLVRAACSSLNLAT
Ga0137380_1002979413300012206Vadose Zone SoilMAVPSIADALQRLKMLIDSSTPIVVMETVEEMRAVRMVRSSCSALNLATFE
Ga0137366_1002515963300012354Vadose Zone SoilMADVLERLKILIDSSTPIIVMETVEEMRAVQLVREASSPLNLA
Ga0137384_1080102713300012357Vadose Zone SoilMLDVLERLKVLIDSSTPIIVMETVEEMRAVRLVRAASAPLTLAV
Ga0137385_1064586513300012359Vadose Zone SoilMVDVLERLRILIDSSTPIIVMETVEEMRAVRLVRAASAGL
Ga0137360_1068334713300012361Vadose Zone SoilMPDALERLKILINSSTPIVVMETVEETRAVGLVRAA
Ga0137419_1187186323300012925Vadose Zone SoilMPIPSTAEALQRLKTLIDSSTPIVVMETVEETRAVRMVRSA*
Ga0137410_1045412333300012944Vadose Zone SoilMPDALERLKILFNSSTPIVVMETVEEMRAVRLVRVACSSLNLATFEWS
Ga0164299_1105467913300012958SoilMADVLERLKILIDSSTPIVVMETVEEMRAVRLVREASSPLRLAV
Ga0164301_1022080613300012960SoilMADVRERLKVLIDSSTPIVVMETVEEMRAVRLVREASSPL
Ga0164301_1067919933300012960SoilMADPLERLKILLSSSTPIVVMETVEEMRVVRLVRA
Ga0164302_1077514923300012961SoilMPDVLDRLKVLIDSSTPIIVMETVEEMRAVRLVRAASSP
Ga0164302_1155466313300012961SoilMADVLERLKILIDSSTPIVVMETVEEMRAVRLVREASSPLRLA
Ga0164302_1190243023300012961SoilMADTLERLKILLNSSTPIVVMETAEEMRVVNMVRVACASLN
Ga0164304_1019385433300012986SoilMADTLERLKILLSSSTPIVVMETVEEMRAVRLVRAACSSL
Ga0157372_1002855593300013307Corn RhizosphereMADVLERLKILIDSSTPIVVMETVEEMRAVRLVREASSPLRLAVF
Ga0137418_1099039313300015241Vadose Zone SoilMADALERLKILLSSSTPIVVMETVEEMRAVRLVRAACSSLNLAT
Ga0134072_1037693613300015357Grasslands SoilMADALERLKILINSSTPIVVMETIEETRAVCLVRAA
Ga0182039_1207413613300016422SoilMADVPDRLKILLDSSTPIVVMETAEEMRAVRLVREAAASLN
Ga0182038_1176522923300016445SoilMDKVLERLKVLIDSSTPIVVMETVEETRAVRMVRAACA
Ga0181511_143372923300016702PeatlandMDRLKVLINSSTPIVVMETIEELRAVRMVRIACAD
Ga0134083_1059109813300017659Grasslands SoilMPDALERLKILINPSTPIVVMETVEEMRAVSLVRTACADLNMAVFE
Ga0187818_1020785033300017823Freshwater SedimentLRLVKPLADALGTLKVLIDSSAPIVVMETVEEVRAVRLVRVACAAL
Ga0187824_1008212633300017927Freshwater SedimentMDKILERLKVLIDSSTPIVVIETVEESRAVRMVRLACA
Ga0187825_1032937613300017930Freshwater SedimentMDKVLDRLKVLLDSSTPIVVMETVEETRAVHMVRLACAALNLAAFEWT
Ga0187821_1046545123300017936Freshwater SedimentMDKVLDRLKVLIDSSTPMVVMETVEESRAVRMVRAACS
Ga0187816_1033196613300017995Freshwater SedimentMTDGLDRLKVLINSSTPIIVMETSEETHAVSMVRTA
Ga0187767_1024209223300017999Tropical PeatlandMPSNTTDALHRLTVLIDSSTPIIAMETVEEIRAVRMVRAACSALNLA
Ga0187805_1009016733300018007Freshwater SedimentMRDGLDRLKVLIDSSTPIVVMETSEEMRAVNVVRA
Ga0187772_1001389913300018085Tropical PeatlandMPGAQATDALQRLKVLIDSSTPIVVMETVEEVRAVRMVRAACAALNLA
Ga0066662_1119984613300018468Grasslands SoilMSTPIERLKVLINSSTPIVIMETVEEMRVIDLVRMAS
Ga0173482_1017492023300019361SoilMADVLERLKILIDSSTPIIVVETVEETRAVQLVREA
Ga0137408_123560413300019789Vadose Zone SoilMADPRERLKVLINSLTPIVVIESVEEVRAVDLVCAACAEAESSRV
Ga0193722_104681323300019877SoilMADALDRLKILIDSSTPIVVMETVEEMRAVRLVRD
Ga0193735_105568313300020006SoilMPDVLERLKILIDSSTPIVVMETVEEMRAVRLVRAASSPLN
Ga0193749_103559913300020010SoilMPDVLDRLKILIDSSTPIVVMETVEEVRAVRLVREAS
Ga0193726_123801713300020021SoilMADALERLKILLNSSTPIVVIETVEEMRAVRLVRVA
Ga0210407_1102696713300020579SoilMASALILDPLTRLKVLLDSSTPIVAMETVEEVRAVRLVRAACAALNL
Ga0210407_1131717423300020579SoilMPDALERLKILLDSSTPIVVMETVEEVRAVRLVRAACSSLNLATF
Ga0210399_1014400133300020581SoilMTDGLDRLKVLINSSTPIVVMETSEEMQAVNLVRN
Ga0210401_1096314533300020583SoilMADALERLKILVDSSTPIVVLETVEEMRAVRMVRA
Ga0210405_1064860013300021171SoilMTDGLDRLKVLINSSTPIIVMETSEETHAVSMVRTACA
Ga0210388_1057066133300021181SoilMAVASIADALQRLKTLIDSSTPIVVMETVEEMRAVRMVRS
Ga0210389_1130194423300021404SoilMTDGLDRLKVLINSSTPIIVMETSEETHAVSMVRAACS
Ga0210387_1146250923300021405SoilMSNALDRLKVLINSSTPIVVMETSEEMRAVSVVRS
Ga0210391_1032341223300021433SoilMTDTLDRLKVLINSSTPIVVMETSEEMRAVNMVRAACTALNMATF
Ga0210391_1108409113300021433SoilMDALASLKVLIDSSAPIVVMETVEEVRAVRLVRVACA
Ga0210390_100000013973300021474SoilMAWPAIPDPLARLKVLLDSSTPIVVMETIEETRAVRLVRAACAALNLAAF
Ga0210390_1005590613300021474SoilMAEPQKKDALQRLKVLIDSSTPIIVMETVEEVRAVRMV
Ga0210402_1043661213300021478SoilMAVPSIADALQRLKTLIDSSTPIIVMETVEEMRAVRMVR
Ga0207695_1071437613300025913Corn RhizosphereMADVLERLKILIDSSTPIIVMETVEEMRAVQLVREAA
Ga0207652_1052144813300025921Corn RhizosphereMADVLERLKVLINSSTPIVVMETVEEVRAVDAVRS
Ga0207681_1117884313300025923Switchgrass RhizosphereMADVLERLKILIDSSTPIIVVETVEETRAVQLVREASSGL
Ga0207664_1000485183300025929Agricultural SoilMADVLERLKILIDSSMPIIVMETVEEMRAVQLVREASS
Ga0207664_1143728323300025929Agricultural SoilMDKVLERLKVLIDSSTPIVVMETVEESRAVRMVRLACAAL
Ga0207689_1086926223300025942Miscanthus RhizosphereMADVLERLKILIDSSTPIIVVETVEETRAVQLVREASSGLN
Ga0207676_1107154413300026095Switchgrass RhizosphereMADTLERLKILLSSSTPIVVMETVEEMRAVRLVRAACSSLS
Ga0207674_1217383313300026116Corn RhizosphereMADVLERLKILIDSSTPIVVMETVEEMRAVRLVREASSPLRLAVFEW
Ga0207675_10007891613300026118Switchgrass RhizosphereMADTLERLKILLSSSTPIVVMETVEEMRAVRLVRAACSS
Ga0207675_10250741313300026118Switchgrass RhizosphereMADTLERLKILLNSSTPIVVMETAEEMRVVNMVRVACASLNLA
Ga0209154_118665813300026317SoilMPDALERLKILINSSTPIVVMETVEETRAVGLVCAA
Ga0209472_126716013300026323SoilMADVLERLKILIDSSTPIVVMETVEEMRAVRLVREASSSLRLVAF
Ga0209152_1037868413300026325SoilMPDVLERLRVLIDSSTPIVILETVEETRAVRLVHAAASPLNLAVFEWTIAS
Ga0257168_114974313300026514SoilMADALERLKILLSSSTPIVVMETVEEMRAVRLVRAA
Ga0208237_103238013300027080Forest SoilMANVLERLKVLIGSSTPIVVMETVEEMRAVRLVRSA
Ga0209004_106966813300027376Forest SoilMTDTLDRLKVLINSSTPILVMETSEEMRAVNMVRTACSAL
Ga0209332_106226323300027439Forest SoilMTWPLAPDPLARLKVLLESSTPIVVIESVEEVRAVRLVRAACSALSL
Ga0209524_108278713300027521Forest SoilMADALERLKILLSSSTPIVVMETVEELRAVRLVRAACSS
Ga0209008_105052033300027545Forest SoilMTDGLDRLKVLINSSTPIVVMETSEEMRAVNMVRAA
Ga0209735_110480613300027562Forest SoilMDKVLDRLKVLMDSSTPIVVMETVEETRAVRMVRYACTALNLAA
Ga0209275_1004008813300027884SoilMNPIDRLKILFNSSTPIVVMETVEEVHALTLVRAA
Ga0209068_1037949013300027894WatershedsMADALERLKILLNSSTPIVVMETVEEMRAVRLVRVA
Ga0209698_1003378153300027911WatershedsMAEPQKKDALQRLKVLIDSSTPIVVIETVEELRRSYGAR
Ga0209698_1008037233300027911WatershedsMCKILTCTLADALERLKILLSSSTPIVVMETVEEMRAVRLV
Ga0302176_1001373613300030057PalsaMASPVIPDPLARLKVLLDSSTPIVVMQTVEEVRAVRLVRAACTALNLAA
Ga0170823_1444504113300031128Forest SoilMTDGLDRLKVLINSSTPIVVMETSEEMHAVNMVRKACGELNMAT
Ga0307476_1054925123300031715Hardwood Forest SoilMTDGFDRLKVLINSSTPILVMETSEEVHAVNMVRAACAELNM
Ga0307474_1119088913300031718Hardwood Forest SoilMTDGFDRLKVLINSSTPILVMETSGEVHAVNMVRA
Ga0307474_1126990513300031718Hardwood Forest SoilMTDGLDRLKVLINSSTPIIVMETSEETQAVNLVRAACTE
Ga0310917_1088937913300031833SoilMDKVLERLKVLIDSSTPIVVMETVEETRAVRMVRA
Ga0307479_1001843513300031962Hardwood Forest SoilMADALERLKILLNSSTPIVVMETVEEMRAVRLVRVACSA
Ga0318525_1073435513300032089SoilMNKALDRLKVLIDSSTPIVVMETVEEVRAVRMVRA
Ga0307472_10238599613300032205Hardwood Forest SoilMPEPQKKDALQRLKVLIDSSTPIVVMETVEEMRAVRMV
Ga0306920_10219675813300032261SoilMDKVLDRPKVLMDSSTPIVVMETVEETRAVRMARAACSAL
Ga0335085_1033489933300032770SoilMTDVLDRLKVLINSSTPIIVMETSEETHAVNMVRTACSQLNMAT
Ga0335078_1098985613300032805SoilMSDTLDHLKILINSSTPILVMETSEEMRAVNMVRSACSELNMA
Ga0335080_1069258833300032828SoilMVKQMADVLERLKILIDSSTPIVVMETVEEIRAVRLVRVACSALNLAT
Ga0335070_1033200313300032829SoilMDALQRLKILIDSSTPIVVIETAEEVCAVRLVRQACAALQLATFEWS
Ga0335083_1106164933300032954SoilMSSTLDRLKVLLDSSTPIVVMETVEEVRAVRLVRAAC
Ga0310914_1115403033300033289SoilMADALARLKILIDSSTPIVVLETVEEMRAVRMVRMAC
Ga0371489_0126407_1_1143300033755Peat SoilMADILERLKVLINSSTPIVVMETVEEVRAVAFVRAACA

 ⦗Top⦘


Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.