Metagenome / Metatranscriptome Family F070816

Basic Information
Family ID	F070816
Family Type	Metagenome / Metatranscriptome
Number of Sequences	122
Average Sequence Length	40 residues
Representative Sequence	MQWRDATVSETGATGFEAPGSVAARQEPDVRQVFDQV
Number of Associated Samples	117
Number of Associated Scaffolds	122

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	100.00 %
% of genes near scaffold ends (potentially truncated)	99.18 %
% of genes from short scaffolds (< 2000 bps)	92.62 %
Associated GOLD sequencing projects	116
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.14

Most Common Taxonomy
Group	Unclassified (76.230 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (22.951 % of family members)
Environment Ontology (ENVO)	Unclassified (22.131 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (60.656 % of family members)

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 0.00% β-sheet: 0.00% Coil/Unstructured: 100.00%
Feature Viewer

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Pfam ID	Name	% Frequency in 122 Family Scaffolds
PF02551	Acyl_CoA_thio	13.93
PF13622	4HBT_3	9.84
PF13361	UvrD_C	4.92
PF08281	Sigma70_r4_2	0.82

COG ID	Name	Functional Category	% Frequency in 122 Family Scaffolds
COG1946	Acyl-CoA thioesterase	Lipid transport and metabolism [I]	13.93

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	76.23 %
All Organisms	root	All Organisms	23.77 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	76.23 %
cellular organisms	root	All Organisms → cellular organisms	23.77 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	76.23 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	23.77 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	76.23 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	21.31 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	76.23 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	21.31 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	76.23 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	13.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	76.23 %
Streptosporangiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	2.46 %
Micromonosporales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales	0.82 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	76.23 %
Micromonosporaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae	0.82 %
Thermomonosporaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae	0.82 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	76.23 %
Actinomadura	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Actinomadura	0.82 %
Actinoplanes	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Actinoplanes	0.82 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	76.23 %
unclassified Actinoplanes	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Actinoplanes → unclassified Actinoplanes	0.82 %
Actinomadura	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Actinomadura	0.82 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	76.23 %
Actinoplanes sp. N902-109	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Actinoplanes → unclassified Actinoplanes → Actinoplanes sp. N902-109	0.82 %
Actinomadura	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Actinomadura	0.82 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2199352024\|deeps__Contig_177065	Not Available	766	Open in IMG/M
3300000651\|AP72_2010_repI_A10DRAFT_1023493	Not Available	788	Open in IMG/M
3300001976\|JGI24752J21851_1025699	Not Available	772	Open in IMG/M
3300004117\|Ga0058893_1319078	Not Available	555	Open in IMG/M
3300004555\|Ga0068922_1155277	Not Available	554	Open in IMG/M
3300004977\|Ga0072329_1381713	Not Available	610	Open in IMG/M
3300005174\|Ga0066680_10263837	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1096	Open in IMG/M
3300005355\|Ga0070671_100704753	All Organisms → cellular organisms → Bacteria	876	Open in IMG/M
3300005434\|Ga0070709_11217322	Not Available	605	Open in IMG/M
3300005446\|Ga0066686_10359282	Not Available	994	Open in IMG/M
3300005454\|Ga0066687_10985936	Not Available	503	Open in IMG/M
3300005556\|Ga0066707_10439809	Not Available	847	Open in IMG/M
3300006031\|Ga0066651_10513638	Not Available	635	Open in IMG/M
3300009092\|Ga0105250_10076729	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1352	Open in IMG/M
3300009101\|Ga0105247_10164344	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1472	Open in IMG/M
3300009698\|Ga0116216_10534463	Not Available	708	Open in IMG/M
3300010047\|Ga0126382_10271249	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1256	Open in IMG/M
3300010048\|Ga0126373_10631093	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1126	Open in IMG/M
3300010073\|Ga0127429_131324	Not Available	516	Open in IMG/M
3300010097\|Ga0127501_1122820	Not Available	504	Open in IMG/M
3300010104\|Ga0127446_1034979	Not Available	529	Open in IMG/M
3300010106\|Ga0127472_1056230	Not Available	577	Open in IMG/M
3300010107\|Ga0127494_1021766	Not Available	554	Open in IMG/M
3300010113\|Ga0127444_1121876	Not Available	501	Open in IMG/M
3300010116\|Ga0127466_1124064	Not Available	615	Open in IMG/M
3300010117\|Ga0127449_1018055	Not Available	616	Open in IMG/M
3300010133\|Ga0127459_1151981	Not Available	583	Open in IMG/M
3300010146\|Ga0126320_1037165	Not Available	561	Open in IMG/M
3300010359\|Ga0126376_10723497	Not Available	961	Open in IMG/M
3300010859\|Ga0126352_1122700	Not Available	592	Open in IMG/M
3300010860\|Ga0126351_1238940	Not Available	632	Open in IMG/M
3300010861\|Ga0126349_1136541	Not Available	554	Open in IMG/M
3300010861\|Ga0126349_1161646	Not Available	607	Open in IMG/M
3300011054\|Ga0138523_1080233	Not Available	619	Open in IMG/M
3300011060\|Ga0138583_1002500	Not Available	563	Open in IMG/M
3300011083\|Ga0138560_1135313	Not Available	621	Open in IMG/M
3300011120\|Ga0150983_10456258	Not Available	527	Open in IMG/M
3300011332\|Ga0126317_10048904	Not Available	601	Open in IMG/M
3300012210\|Ga0137378_11139847	Not Available	695	Open in IMG/M
3300012224\|Ga0134028_1186825	Not Available	580	Open in IMG/M
3300012359\|Ga0137385_10043359	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	4030	Open in IMG/M
3300012375\|Ga0134034_1024317	Not Available	586	Open in IMG/M
3300012376\|Ga0134032_1234436	Not Available	581	Open in IMG/M
3300012376\|Ga0134032_1240848	Not Available	565	Open in IMG/M
3300012376\|Ga0134032_1243689	Not Available	598	Open in IMG/M
3300012382\|Ga0134038_1059388	Not Available	591	Open in IMG/M
3300012384\|Ga0134036_1011349	Not Available	598	Open in IMG/M
3300012384\|Ga0134036_1185049	Not Available	609	Open in IMG/M
3300012400\|Ga0134048_1188764	Not Available	593	Open in IMG/M
3300012404\|Ga0134024_1125449	Not Available	584	Open in IMG/M
3300012405\|Ga0134041_1378609	Not Available	532	Open in IMG/M
3300012957\|Ga0164303_10748601	Not Available	665	Open in IMG/M
3300014154\|Ga0134075_10494631	Not Available	547	Open in IMG/M
3300017970\|Ga0187783_11275608	Not Available	529	Open in IMG/M
3300018025\|Ga0187885_10407911	Not Available	608	Open in IMG/M
3300018038\|Ga0187855_10079856	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1992	Open in IMG/M
3300020076\|Ga0206355_1595642	Not Available	728	Open in IMG/M
3300020610\|Ga0154015_1227013	Not Available	590	Open in IMG/M
3300021151\|Ga0179584_1057761	Not Available	624	Open in IMG/M
3300021307\|Ga0179585_1153052	Not Available	602	Open in IMG/M
3300021402\|Ga0210385_10452827	Not Available	969	Open in IMG/M
3300021406\|Ga0210386_10205780	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1667	Open in IMG/M
3300021474\|Ga0210390_10315307	Not Available	1324	Open in IMG/M
3300021478\|Ga0210402_11087830	Not Available	727	Open in IMG/M
3300022509\|Ga0242649_1051750	Not Available	579	Open in IMG/M
3300022527\|Ga0242664_1111619	Not Available	572	Open in IMG/M
3300022529\|Ga0242668_1083784	Not Available	624	Open in IMG/M
3300022531\|Ga0242660_1142580	Not Available	621	Open in IMG/M
3300022711\|Ga0242674_1048844	Not Available	578	Open in IMG/M
3300022713\|Ga0242677_1046609	Not Available	626	Open in IMG/M
3300023660\|Ga0247550_102922	Not Available	600	Open in IMG/M
3300025527\|Ga0208714_1019949	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1644	Open in IMG/M
3300025906\|Ga0207699_10998196	Not Available	619	Open in IMG/M
3300025916\|Ga0207663_11194272	Not Available	612	Open in IMG/M
3300026551\|Ga0209648_10072616	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2892	Open in IMG/M
3300027110\|Ga0208488_1004814	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	2748	Open in IMG/M
3300027119\|Ga0209522_1016086	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	850	Open in IMG/M
3300027326\|Ga0209731_1060865	Not Available	579	Open in IMG/M
3300027370\|Ga0209010_1032279	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Actinoplanes → unclassified Actinoplanes → Actinoplanes sp. N902-109	897	Open in IMG/M
3300027371\|Ga0209418_1026782	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	986	Open in IMG/M
3300027567\|Ga0209115_1129841	Not Available	568	Open in IMG/M
3300027765\|Ga0209073_10013107	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2299	Open in IMG/M
3300028138\|Ga0247684_1005917	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1919	Open in IMG/M
3300028780\|Ga0302225_10298402	Not Available	764	Open in IMG/M
3300028789\|Ga0302232_10010096	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	5739	Open in IMG/M
3300028799\|Ga0307284_10471858	Not Available	514	Open in IMG/M
3300029701\|Ga0222748_1074520	Not Available	623	Open in IMG/M
3300029999\|Ga0311339_11556221	Not Available	586	Open in IMG/M
3300030056\|Ga0302181_10024088	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Actinomadura	3436	Open in IMG/M
3300030602\|Ga0210254_10893329	Not Available	627	Open in IMG/M
3300030603\|Ga0210253_10414837	Not Available	615	Open in IMG/M
3300030605\|Ga0210265_1099344	Not Available	606	Open in IMG/M
3300030812\|Ga0265734_104319	Not Available	592	Open in IMG/M
3300030982\|Ga0265748_106155	Not Available	590	Open in IMG/M
3300030999\|Ga0074019_11014960	Not Available	554	Open in IMG/M
3300031231\|Ga0170824_111334348	Not Available	597	Open in IMG/M
3300031366\|Ga0307506_10273872	Not Available	651	Open in IMG/M
3300031469\|Ga0170819_12789401	Not Available	590	Open in IMG/M
3300031544\|Ga0318534_10303225	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	920	Open in IMG/M
3300031640\|Ga0318555_10115033	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1426	Open in IMG/M
3300031668\|Ga0318542_10024956	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	2512	Open in IMG/M
3300031679\|Ga0318561_10406158	Not Available	748	Open in IMG/M
3300031681\|Ga0318572_10343868	All Organisms → cellular organisms → Bacteria	884	Open in IMG/M
3300031769\|Ga0318526_10181349	Not Available	859	Open in IMG/M
3300031831\|Ga0318564_10211011	All Organisms → cellular organisms → Bacteria	863	Open in IMG/M
3300032027\|Ga0247536_104275	Not Available	619	Open in IMG/M
3300032060\|Ga0318505_10413407	Not Available	638	Open in IMG/M
3300032064\|Ga0318510_10150599	Not Available	918	Open in IMG/M
3300032067\|Ga0318524_10049483	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1998	Open in IMG/M
3300032089\|Ga0318525_10047343	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2127	Open in IMG/M
3300032089\|Ga0318525_10502102	Not Available	621	Open in IMG/M
3300032160\|Ga0311301_12048164	Not Available	665	Open in IMG/M
3300032261\|Ga0306920_101158562	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1119	Open in IMG/M
3300032756\|Ga0315742_12988238	Not Available	545	Open in IMG/M
3300032770\|Ga0335085_10451654	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1478	Open in IMG/M
3300032828\|Ga0335080_10799962	Not Available	974	Open in IMG/M
3300032897\|Ga0335071_10125603	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2515	Open in IMG/M
3300032898\|Ga0335072_11813249	Not Available	503	Open in IMG/M
3300032954\|Ga0335083_11042751	Not Available	641	Open in IMG/M
3300033004\|Ga0335084_12156351	Not Available	540	Open in IMG/M
3300033158\|Ga0335077_11993155	Not Available	539	Open in IMG/M
3300033545\|Ga0316214_1041872	Not Available	658	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	95.90%
Host-Associated	Host-Associated	4.10%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	92.62%
Plants	Host-Associated → Plants	4.10%
Aquatic	Environmental → Aquatic	3.28%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	89.34%
Freshwater	Environmental → Aquatic → Freshwater	3.28%
Peat	Environmental → Terrestrial → Peat	3.28%
Rhizosphere	Host-Associated → Plants → Rhizosphere	2.46%
Rhizoplane	Host-Associated → Plants → Rhizoplane	0.82%
Roots	Host-Associated → Plants → Roots	0.82%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	73.77%
Loam	Environmental → Terrestrial → Soil → Loam	9.02%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	6.56%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	3.28%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	1.64%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	1.64%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	1.64%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	0.82%
Unclassified	Host-Associated → Plants → Roots → Unclassified	0.82%
Soil	Host-Associated → Plants → Rhizosphere → Soil	0.82%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	40.16%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	27.05%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	6.56%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	6.56%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	4.92%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	3.28%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	2.46%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	1.64%
Unclassified	Environmental → Aquatic → Freshwater → Groundwater → Unclassified	1.64%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	1.64%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.82%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	0.82%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	0.82%
Unclassified	Host-Associated → Plants → Roots → Unclassified → Unclassified	0.82%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	0.82%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	22.95%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	17.21%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	6.56%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	5.74%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	5.74%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	5.74%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	4.10%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	3.28%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	3.28%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	3.28%
Boreal Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Boreal Forest Soil	3.28%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	2.46%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	2.46%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	1.64%
Soil	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil	1.64%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	1.64%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	1.64%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.82%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.82%
Arctic Peat Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil	0.82%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.82%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.82%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	0.82%
Corn, Switchgrass And Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	0.82%
Roots	Host-Associated → Plants → Roots → Unclassified → Unclassified → Roots	0.82%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	0.82%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2199352024	Bare-fallow DEEP SOIL	Environmental	Open in IMG/M
3300000651	Forest soil microbial communities from Amazon forest - Pasture72 2010 replicate I A10	Environmental	Open in IMG/M
3300001976	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S7	Host-Associated	Open in IMG/M
3300004117	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF222 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300004555	Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 7 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300004977	Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 67 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300005174	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_129	Environmental	Open in IMG/M
3300005355	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG	Host-Associated	Open in IMG/M
3300005434	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG	Environmental	Open in IMG/M
3300005446	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_135	Environmental	Open in IMG/M
3300005454	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_136	Environmental	Open in IMG/M
3300005556	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_156	Environmental	Open in IMG/M
3300006031	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Angelo_100	Environmental	Open in IMG/M
3300009092	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-4 metaG	Host-Associated	Open in IMG/M
3300009101	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG	Host-Associated	Open in IMG/M
3300009698	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_3_AS metaG	Environmental	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010073	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Wat_20_2_24_1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010097	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Met_40_5_24_2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010104	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Wat_40_2_16_1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010106	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Met_20_5_0_1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010107	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Met_40_5_8_1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010113	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Wat_20_5_24_2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010116	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Met_20_2_24_1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010117	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Wat_40_2_4_2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010133	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Wat_40_5_8_2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010146	Soil microbial communities from California, USA to study soil gas exchange rates - JR-CA-SND metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010859	Boreal forest soil eukaryotic communities from Alaska, USA - C5-5 Metatranscriptome (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300010860	Boreal forest soil eukaryotic communities from Alaska, USA - C5-2 Metatranscriptome (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300010861	Boreal forest soil eukaryotic communities from Alaska, USA - C4-5 Metatranscriptome (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300011054	Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 1 (Metagenome Metatranscriptome) (version 2)	Environmental	Open in IMG/M
3300011060	Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 73 (Metagenome Metatranscriptome) (version 2)	Environmental	Open in IMG/M
3300011083	Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 45 (Metagenome Metatranscriptome) (version 2)	Environmental	Open in IMG/M
3300011120	Combined assembly of Microbial Forest Soil metaT	Environmental	Open in IMG/M
3300011332	Soil microbial communities from California, USA to study soil gas exchange rates - SR-CA-SC2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012210	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_60_16 metaG	Environmental	Open in IMG/M
3300012224	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_20cm_2_4_2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012359	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_80_16 metaG	Environmental	Open in IMG/M
3300012375	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_20cm_5_8_1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012376	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_20cm_5_0_1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012382	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_20cm_5_4_2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012384	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_20cm_5_24_1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012400	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_40cm_2_4_2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012404	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_20cm_2_8_1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012405	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_20cm_5_24_2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012957	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_207_MG	Environmental	Open in IMG/M
3300014154	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_09212015	Environmental	Open in IMG/M
3300017970	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_SJ02_MP02_20_MG	Environmental	Open in IMG/M
3300018025	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_20_100	Environmental	Open in IMG/M
3300018038	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_8_10	Environmental	Open in IMG/M
3300020076	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-2 (Metagenome Metatranscriptome) (v3)	Environmental	Open in IMG/M
3300020610	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5pm-1 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300021151	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_06_16RNAfungal (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300021307	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_06_16RNAfungal (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300021402	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-O	Environmental	Open in IMG/M
3300021406	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-O	Environmental	Open in IMG/M
3300021474	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-O	Environmental	Open in IMG/M
3300021478	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M	Environmental	Open in IMG/M
3300022509	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-27-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022527	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-4-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022529	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022531	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-28-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022711	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022713	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300023660	Metatranscriptome of spruce rhizosphere microbial communities from Bohemian Forest, Czech Republic - CZU4 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300025527	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 415-1 shallow-072012 (SPAdes)	Environmental	Open in IMG/M
3300025906	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025916	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300026551	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm (SPAdes)	Environmental	Open in IMG/M
3300027110	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF001 (SPAdes)	Environmental	Open in IMG/M
3300027119	Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM1H0_O2 (SPAdes)	Environmental	Open in IMG/M
3300027326	Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_RefH0_M3 (SPAdes)	Environmental	Open in IMG/M
3300027370	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM1_O3 (SPAdes)	Environmental	Open in IMG/M
3300027371	Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM2H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300027567	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_O2 (SPAdes)	Environmental	Open in IMG/M
3300027765	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100 (SPAdes)	Environmental	Open in IMG/M
3300028138	Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK25	Environmental	Open in IMG/M
3300028780	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_E3_2	Environmental	Open in IMG/M
3300028789	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_N2_3	Environmental	Open in IMG/M
3300028799	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_123	Environmental	Open in IMG/M
3300029701	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-O (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300029999	I_Palsa_E3 coassembly	Environmental	Open in IMG/M
3300030056	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_E3_3	Environmental	Open in IMG/M
3300030602	Metatranscriptome of forest soil microbial communities from Boreal Montmorency Forest, Quebec, Canada - FO133-ANR018SO (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300030603	Metatranscriptome of forest soil microbial communities from Boreal Montmorency Forest, Quebec, Canada - FO133-ANR017SO (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300030605	Metatranscriptome of forest soil microbial communities from Boreal Montmorency Forest, Quebec, Canada - FO144-ARE042SO (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300030812	Metatranscriptome of plant litter microbial communities from Maridalen valley, Oslo, Norway - NLE6 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030982	Metatranscriptome of soil microbial communities from Maridalen valley, Oslo, Norway - NSU5 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030999	Metatranscriptome of forest soil microbial communities from Dalarna County, Sweden - Site 2 - LB 7 (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031366	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 25_S	Environmental	Open in IMG/M
3300031469	Fir Spring Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031544	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f26	Environmental	Open in IMG/M
3300031640	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f23	Environmental	Open in IMG/M
3300031668	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f23	Environmental	Open in IMG/M
3300031679	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f23	Environmental	Open in IMG/M
3300031681	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f20	Environmental	Open in IMG/M
3300031769	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f24	Environmental	Open in IMG/M
3300031831	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f20	Environmental	Open in IMG/M
3300032027	Metatranscriptome of spruce litter microbial communities from Bohemian Forest, Czech Republic - CLE4 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300032060	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f18	Environmental	Open in IMG/M
3300032064	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f17	Environmental	Open in IMG/M
3300032067	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f22	Environmental	Open in IMG/M
3300032089	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f23	Environmental	Open in IMG/M
3300032160	Sb_50d combined assembly (MetaSPAdes)	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300032756	Forest Soil Metatranscriptomics Site 2 Humus Litter Mineral Combined Assembly	Environmental	Open in IMG/M
3300032770	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.5	Environmental	Open in IMG/M
3300032828	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.4	Environmental	Open in IMG/M
3300032897	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.5	Environmental	Open in IMG/M
3300032898	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.1	Environmental	Open in IMG/M
3300032954	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.2	Environmental	Open in IMG/M
3300033004	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.4	Environmental	Open in IMG/M
3300033158	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.1	Environmental	Open in IMG/M
3300033545	Spruce roots microbial communities from Maridalen valley, Oslo, Norway - NRE4	Host-Associated	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
deeps_03296820	2199352024	Soil	MAPMQWRDATVSETGATGFEAPGSVAARQEPDVRQVFDQVSIMAVA
AP72_2010_repI_A10DRAFT_10234933	3300000651	Forest Soil	MQWRDATVSETGATGFQVPGSVMARQEPDVRQVFDQVSIVAVAG
JGI24752J21851_10256992	3300001976	Corn, Switchgrass And Miscanthus Rhizosphere	MAPMQWRDATVSETGATGFEALGSVAARQEPDVRQVFDQVSI
Ga0058893_13190781	3300004117	Forest Soil	MAPMQWHDATVRETSATGFQAPGSVMARQEPDVRQVFDQV
Ga0068922_11552771	3300004555	Peatlands Soil	MAPMQWRDATVSGTGATGFQAPGSVMARQEPDVRQVFDQVGFVASASQVR
Ga0072329_13817131	3300004977	Peatlands Soil	MAPMQWRDATVSGTGATGFETPGSVTARQEPDVRQVFDQQFAVA
Ga0066680_102638373	3300005174	Soil	MAPMQWHDATVSETGATGFQASGSVMARQEPDVRQVFDQV
Ga0070671_1007047531	3300005355	Switchgrass Rhizosphere	MAPMQWRDATVNETDATGFEASGTLAARQEPDVRQVFDQV
Ga0070709_112173222	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	MAPMQWHDATVSRTGATGFEAPVSVTARQEPDVRQVFDQVGI
Ga0066686_103592823	3300005446	Soil	MQWHDATVSETGATGFQASGSVMARQEPDVRQVFDQVSIM
Ga0066687_109859361	3300005454	Soil	MQWHDATVRETGATGFQAPGSVMARQEPDVRQVFDQVSIMSVA
Ga0066707_104398093	3300005556	Soil	MAPMQWHDATVRETGATGFQAPGSVMARQEPDVRQVFDQVSIMAVGSAT
Ga0066651_105136382	3300006031	Soil	MAPMQWHDATVRETGATGFQAPGSVMARQEPDVRQVFDQVSIMAV
Ga0105250_100767291	3300009092	Switchgrass Rhizosphere	MAPMQWRDATVRETGATGFEALGSVAARQEPDVRQVFDQVSIMSV
Ga0105247_101643441	3300009101	Switchgrass Rhizosphere	MAPMQWRDATVNETDATGFEASGTLTARQEPDVRQVFDQIGIVEV
Ga0116216_105344632	3300009698	Peatlands Soil	MAPMQWRDATVSGTGATGFQAPGSVTARQEPDVRQVFDQVGFVASASQVR
Ga0126382_102712491	3300010047	Tropical Forest Soil	MAPMQWRDATVSGTDATGFEASVSATARQEPDVRQVFDQV
Ga0126373_106310932	3300010048	Tropical Forest Soil	MAPMQWRDATVNETDATGFEASGTLAARQEPDVRQVFDQVGMVAVAGSA
Ga0127429_1313242	3300010073	Grasslands Soil	MAPMQWRDATVSETGATGFEAPGSVAARQEPDVRQVFDQVSIMSVASS
Ga0127501_11228201	3300010097	Grasslands Soil	MAPMQWRDATVTETDATGFEASGFVAARQEPEVRQAF
Ga0127446_10349792	3300010104	Grasslands Soil	MAPMQWRDATVSETGATGFQAPGSVAARQEPDVRQVF
Ga0127472_10562302	3300010106	Grasslands Soil	MAPMQWRDATVTETDATGFEASGFVATRQEPEVRQAFDQVGIVAVAGP
Ga0127494_10217661	3300010107	Grasslands Soil	MAPMQWRDATVNETDATGFEASGTLAARQEPDVRQVFDQVG
Ga0127444_11218761	3300010113	Grasslands Soil	MAPMQWRDATVSETGATGFEAPGSVAARQEPDVRQVFDQVSIMAV
Ga0127466_11240641	3300010116	Grasslands Soil	MAPMQWRDATVSETGATGFQAPGSVAARQEPDVRQVFDQVSIMSVA
Ga0127449_10180551	3300010117	Grasslands Soil	MAPMQWRDATVSETGATGFEAPGSVAARQEPDVRQVFDQVSIMSVA
Ga0127459_11519812	3300010133	Grasslands Soil	MAPMQWRDATVTETDATGFEASGFVATRQEPEVRQAFDQVGIV
Ga0126320_10371651	3300010146	Soil	MAPMQWRDATVTETDATGFEASGFVATRQEPEVRQ
Ga0126376_107234973	3300010359	Tropical Forest Soil	MAPMQWHDATVSETGATGFDAPGSVAARQEPDVRQVFDQVS
Ga0126352_11227001	3300010859	Boreal Forest Soil	MQWRDATVSGTGATGFQAPGSVAARQEPDVRQVFDQ
Ga0126351_12389401	3300010860	Boreal Forest Soil	MQWRNATVGEADATGFDASRRQAARQEPDVRPVFDQVDG
Ga0126349_11365412	3300010861	Boreal Forest Soil	MAPMQWRDATVGGTGATGFEAPGSMTARQEPDVRQVFDQ
Ga0126349_11616462	3300010861	Boreal Forest Soil	MAPMQWHDATVSETDATGFQASGSVMARQEPDVRQVFDQVSIMAA
Ga0138523_10802332	3300011054	Peatlands Soil	MAPMQWRDATVSRTGATGFEAPGSVTARQEPDVRQIFDQQFAVTG
Ga0138583_10025001	3300011060	Peatlands Soil	MAPMQWRDATVSGTGATGFEAPGSVTARQEPDVRQVFDQ
Ga0138560_11353131	3300011083	Peatlands Soil	MAPMQWRDATVGGTGATGFQAPGSVTARQEPDVRQVFDQVGFVASASQ
Ga0150983_104562581	3300011120	Forest Soil	MQWRDATVSGTGATGFQAPGSVTARQEPDVRQVFD
Ga0126317_100489041	3300011332	Soil	MAPMQWRDATVSETGATGFEALGSVAARQEPDVRQ
Ga0137378_111398471	3300012210	Vadose Zone Soil	MAPMQWRDATVDETDATGFEASGTLAARQEPDVRQVFDQV
Ga0134028_11868251	3300012224	Grasslands Soil	MAPMQWRDATVNETDATGFEASGTLAARQEPDVRQVFDQ
Ga0137385_100433591	3300012359	Vadose Zone Soil	MAPMQWRDATVSGTGATGFEAPGSMTARQEPDVRQVFDQVG
Ga0134034_10243171	3300012375	Grasslands Soil	MAPMQWRDATVSETDATGLEASGFVAARQEPDVRQAFDQVGIV
Ga0134032_12344362	3300012376	Grasslands Soil	MAPMQWRDATVNETDATGFQASGTLTARQEPDVRQVFDQVGI
Ga0134032_12408482	3300012376	Grasslands Soil	MAPMQWRDATVTETDATGFEASGFVAARQEPEVRQAFD
Ga0134032_12436892	3300012376	Grasslands Soil	MQWHDATVSETGATGFQASGSVMARQEPDVRQVFD
Ga0134038_10593882	3300012382	Grasslands Soil	MAPMQWHDAIVRETGATGFQAPGSVMARQEPDVRQVFD
Ga0134036_10113491	3300012384	Grasslands Soil	MAPMQWRDATVNETDATGFEASGTLAARQEPDVRQVFDQVSIMAV
Ga0134036_11850492	3300012384	Grasslands Soil	MAPMQWRDATVSETGATGFEAPGSVAARQEPDVRQVFDQVS
Ga0134048_11887641	3300012400	Grasslands Soil	MAPMQWHDATVSETGATGFQASGSVMARQEPDVRQVFDQVSI
Ga0134024_11254492	3300012404	Grasslands Soil	MAPMQWRDATVNETDATGFEASGTLTARQEPDVRQVFDQVG
Ga0134041_13786091	3300012405	Grasslands Soil	MAPMQWRDATVNETDATGFEASGTLTARQEPDVRQ
Ga0164303_107486011	3300012957	Soil	MAPMQWHDATDTETGATGFEAPGSVAARQEPDVRQV
Ga0134075_104946311	3300014154	Grasslands Soil	MAPMQWRDATVSETGATGFQAPGSVAARQEPDVRQVFDQVSIM
Ga0187783_112756081	3300017970	Tropical Peatland	MQWRDATVSGTDAPGFKASAPVAARQEPDVRQVFDQV
Ga0187885_104079111	3300018025	Peatland	MAPMQWRDATVSRTGATGLQAPGSATARQEPDVRQVFDQVGF
Ga0187855_100798563	3300018038	Peatland	MQWRDATVGGTDATGYEASGPAAARQEPDVRQVFDQVGIAGQVG
Ga0206355_15956422	3300020076	Corn, Switchgrass And Miscanthus Rhizosphere	MQWRDATVNETDATGFEASGTLAVGQEPDVRQVFDQVGIVEVAGAAT
Ga0154015_12270131	3300020610	Corn, Switchgrass And Miscanthus Rhizosphere	MQWRDATVNETDATGFEASGTLAVGQEPDVRQVFDQV
Ga0179584_10577611	3300021151	Vadose Zone Soil	MQWHDATVSETGATGFQAPGSVMARQEPDVRQVFDQVSIMAVGS
Ga0179585_11530521	3300021307	Vadose Zone Soil	MQWRDATVSETGATGFGAPGSVAARQEPDVRQVFDQ
Ga0210385_104528273	3300021402	Soil	MQWRDATVGGTDATGFEASGSVAARQEPDVRQVFDQV
Ga0210386_102057801	3300021406	Soil	MHWRDATVGQTSATGFEAPASVTARQEPDVRQVID
Ga0210390_103153073	3300021474	Soil	MQWRDATVSGTGATGFQAPGSVTARQEPDVRQVFDQ
Ga0210402_110878302	3300021478	Soil	MQWRDATVSGTGATGFQAPGSVTARQEPDVRQVFDQVG
Ga0242649_10517502	3300022509	Soil	MAPMQWRDATVSGTGATGFQAPGSVTARQEPDVRQVF
Ga0242664_11116191	3300022527	Soil	MQWRDATVSGTGETGFQVPGSVAARQEPDVRQVFDQ
Ga0242668_10837841	3300022529	Soil	MHWRDATVGQTSATGFEAPASVTARQEPDVRQVIDQVQPPVG
Ga0242660_11425802	3300022531	Soil	MQWRDATVSETGATGFEALGSVAARQEPDVRQVFDQVGIMSVAGSAT
Ga0242674_10488441	3300022711	Soil	MQWRDATVSETSATGFEALGSVAARQEPDVRQVFDQVGIM
Ga0242677_10466091	3300022713	Soil	MQWRDATVGGTDATGYEASGPAAAWQEPDVRQVFDQVGSFDQVG
Ga0247550_1029221	3300023660	Soil	MQWRDATVSGTGATGFQAPGSVTARQEPDVRQVFDQVGFV
Ga0208714_10199493	3300025527	Arctic Peat Soil	MQWRDATVSGTGATGFQAPGSVMARQKPDVRQVFDQVGMVA
Ga0207699_109981962	3300025906	Corn, Switchgrass And Miscanthus Rhizosphere	MAPMQWHDATVSRTGATGFEAPVSVTARQEPDVRQVFDQVGII
Ga0207663_111942722	3300025916	Corn, Switchgrass And Miscanthus Rhizosphere	MAPMQWRDATVSETDATGFEASGFVAARQEPEVRQAFDQ
Ga0209648_100726161	3300026551	Grasslands Soil	MEWRDATVGVTGATGFEAPGLVTARQEPDVRQVFDQV
Ga0208488_10048143	3300027110	Forest Soil	MQWRDATVGGTDATGFEASRPAATRQEPNVRQVFDQVGSAGQV
Ga0209522_10160861	3300027119	Forest Soil	MAPMQWRDATVSETGATGFEAPGSVAARQEPDVRQ
Ga0209731_10608651	3300027326	Forest Soil	MAPMQWRDATVSETGATGFEAPGSVAARQEPDVRQVFDQVSIM
Ga0209010_10322792	3300027370	Forest Soil	MQWRDATVGRTDETGYEASGPAAAWQEPDVRQVFDQVGS
Ga0209418_10267823	3300027371	Forest Soil	MQWRDATVSETGATGFQVPGSVMARQEPDVRQVFDQVSIVAV
Ga0209115_11298412	3300027567	Forest Soil	MQWRDATVGGTSATGFEALGSVTARQEPDVRQAIDQVQ
Ga0209073_100131071	3300027765	Agricultural Soil	MQWRDATVSETGATGFEALGSVAARQEPDVRQVFDQVSI
Ga0247684_10059173	3300028138	Soil	MQWRDATVSETGATGFEAPGSVAARQEPDVRQVFDQV
Ga0302225_102984022	3300028780	Palsa	MQWRDATVGGTDATGYEASGPAAKRQEPDVRQVFDQVGAVGQVGVA
Ga0302232_100100961	3300028789	Palsa	MQWRDATVGGTDATGFEASRPAATRQEPNVRQVFDQVGSAEAV
Ga0307284_104718582	3300028799	Soil	MAPMQWRDATVSETGATGFEAPGSVAARLEPDVRQVFDQVSI
Ga0222748_10745202	3300029701	Soil	MQWRDATISETGATGFQAPGSVMARQEPDVRQVFDQVGFVASA
Ga0311339_115562212	3300029999	Palsa	MAPMQWRDATVGRTGATGYEAYVAAAMRQDPDVRQGFDQVGPA
Ga0302181_100240881	3300030056	Palsa	MQWRDATVGGTDATGFEASGPAATRQEPDVRQVFD
Ga0210254_108933291	3300030602	Soil	MQWRDATVDGTDVTGFDASGPAAAWQEPDVRQVFDQVGSF
Ga0210253_104148371	3300030603	Soil	MQWRDATVGETDATGFDASRRQAARQEPAVRQVFDQ
Ga0210265_10993442	3300030605	Soil	MQWRSATVGGTDATGFEASVPMAARQEPEVRQVFDQVGAAD
Ga0265734_1043192	3300030812	Soil	MQWRDATVSGTGATGFQAPGSVTARQEPDVRQVFDQVGFVASA
Ga0265748_1061551	3300030982	Soil	MQWRDATVSGTGATGFQAPGSVTARQEPDVRQVFDQV
Ga0074019_110149601	3300030999	Soil	MAPMQWRDATVDRTDATGLEASVLMAARQEPDVRQVFDQVGFVGQ
Ga0170824_1113343481	3300031231	Forest Soil	MAPMQWRDATVDRMDDTGLQASIPVARQEPDVREDYIGA
Ga0307506_102738722	3300031366	Soil	MQWHDATVSETGATGFQAPGSVMARQEPDVRQVFDQVS
Ga0170819_127894012	3300031469	Forest Soil	MAPMQWRDATVDRMDDTGLQASIPVARQEPDVKKKAK
Ga0318534_103032253	3300031544	Soil	MQWRDATVSETGATGFQAPGSVTARQEPDVRQVFDQVS
Ga0318555_101150332	3300031640	Soil	MQWRDATVSEMGATGIQAPGSVTARQEPDVRQVFDQVSI
Ga0318542_100249563	3300031668	Soil	MQWRDATVSETGATGFQVPGSVTARQEPDVRQEFDQVS
Ga0318561_104061582	3300031679	Soil	MQWRDATVSETGATGFQVPGSVTARQEPDVRQEFDQVSIVAVAG
Ga0318572_103438683	3300031681	Soil	MQWRDATVSETGATGFQVPGSVTARQEPDVRQEFDQ
Ga0318526_101813492	3300031769	Soil	MQWRDATVSEMGATGIQAPGSVMARQEPDVRQVFD
Ga0318564_102110111	3300031831	Soil	MQWRDATVSETGATGFEAPGSVTVRQEPDVKQVFDQ
Ga0247536_1042751	3300032027	Soil	MQWRDATVGGTDATGFEASRPAATRQEPNVRQVFDQVGSAGQVGVA
Ga0318505_104134071	3300032060	Soil	MQWRDATVSETGATGFQVPGSVMERQEPDVRQVFDQ
Ga0318510_101505993	3300032064	Soil	MQWRDATISETGATGFQAPGSVMARQEPDVRQEFDQVSIVAVA
Ga0318524_100494831	3300032067	Soil	MQWRDATVSRTGATGFEAPAPVTARQEPDVRQQVF
Ga0318525_100473434	3300032089	Soil	MQWRDATVSETGATGFEAPGSVTVRQEPDVKQVFD
Ga0318525_105021022	3300032089	Soil	MQWRDATVSGTGATGIEAPATVTARQEPDVRQQVF
Ga0311301_120481642	3300032160	Peatlands Soil	MQWRDATVSGTGATGLQAPGSVTARQEPDVRQVFDQVGFVASAS
Ga0306920_1011585623	3300032261	Soil	MQWRDATVSETGATGFEAPGSVTVRQEPDVKQVFDQV
Ga0315742_129882381	3300032756	Forest Soil	MAPMQWRDATVSGTGATGFQAPGSVAARQEPDVRQVFDQ
Ga0335085_104516543	3300032770	Soil	MQWRDATVSETGATGFKAPGSVTARQEPDVKQVFDQ
Ga0335080_107999622	3300032828	Soil	MQWRDATVSGAGATGSAAPATVTARQEPDVRQALDEVGI
Ga0335071_101256033	3300032897	Soil	MQWRDATVSETGATGIQAPGSVTARREPDVRQVFDQVSIVAVAG
Ga0335072_118132491	3300032898	Soil	MQWRDATVGELDATGFEVSSPAARQEPEFSQVFDEVGGA
Ga0335083_110427512	3300032954	Soil	MQWRDATVSETGATGIQAPGSVTARQEPDVRQVFDQVSIVAVASSA
Ga0335084_121563511	3300033004	Soil	MQWRDATVSETGATGFQVPGSVTARQEPDVRQEFD
Ga0335077_119931551	3300033158	Soil	MAPMQWRDATVSETGATGFKAPGSVTARQEPDVRQVFDQVGIVAVA
Ga0316214_10418721	3300033545	Roots	MQWRDATVGETDATGFDASRRQATRQEPVVRQVFDQVGETN

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.14
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.14
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NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F070816

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Hidden Markov Model


Click on a Sequence Logo column to get its information.
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