Metagenome / Metatranscriptome Family F070691

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F070691
Family Type	Metagenome / Metatranscriptome
Number of Sequences	123
Average Sequence Length	74 residues
Representative Sequence	RLSDGTVTLLLTKSQVRPKSGVQYFGIQVSDLAGTKKRLQHDGVAVSEAGSGQIQFTDPEGNRVVVSEAGWVN
Number of Associated Samples	106
Number of Associated Scaffolds	123

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	5.69 %
% of genes near scaffold ends (potentially truncated)	93.50 %
% of genes from short scaffolds (< 2000 bps)	81.30 %
Associated GOLD sequencing projects	99
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.57

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (87.805 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere (11.382 % of family members)
Environment Ontology (ENVO)	Unclassified (35.772 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (44.715 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 12.87% β-sheet: 21.78% Coil/Unstructured: 65.35%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.57
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.57
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 123 Family Scaffolds
PF04255	DUF433	8.13
PF04055	Radical_SAM	5.69
PF09084	NMT1	4.07
PF07883	Cupin_2	4.07
PF14338	Mrr_N	3.25
PF04471	Mrr_cat	1.63
PF13379	NMT1_2	1.63
PF00903	Glyoxalase	1.63
PF10049	DUF2283	1.63
PF03401	TctC	0.81
PF04365	BrnT_toxin	0.81
PF13561	adh_short_C2	0.81
PF05016	ParE_toxin	0.81
PF14076	DUF4258	0.81
PF14346	DUF4398	0.81
PF07043	DUF1328	0.81
PF00285	Citrate_synt	0.81
PF00296	Bac_luciferase	0.81
PF00893	Multi_Drug_Res	0.81
PF07702	UTRA	0.81
PF12681	Glyoxalase_2	0.81
PF00753	Lactamase_B	0.81
PF02401	LYTB	0.81

COG ID	Name	Functional Category	% Frequency in 123 Family Scaffolds
COG2442	Predicted antitoxin component of a toxin-antitoxin system, DUF433 family	Defense mechanisms [V]	8.13
COG0715	ABC-type nitrate/sulfonate/bicarbonate transport system, periplasmic component	Inorganic ion transport and metabolism [P]	4.07
COG4521	ABC-type taurine transport system, periplasmic component	Inorganic ion transport and metabolism [P]	4.07
COG0761	4-Hydroxy-3-methylbut-2-enyl diphosphate reductase IspH	Lipid transport and metabolism [I]	1.63
COG0372	Citrate synthase	Energy production and conversion [C]	0.81
COG2076	Multidrug transporter EmrE and related cation transporters	Defense mechanisms [V]	0.81
COG2141	Flavin-dependent oxidoreductase, luciferase family (includes alkanesulfonate monooxygenase SsuD and methylene tetrahydromethanopterin reductase)	Coenzyme transport and metabolism [H]	0.81
COG2929	Ribonuclease BrnT, toxin component of the BrnT-BrnA toxin-antitoxin system	Defense mechanisms [V]	0.81
COG3181	Tripartite-type tricarboxylate transporter, extracytoplasmic receptor component TctC	Energy production and conversion [C]	0.81
COG5487	Uncharacterized membrane protein YtjA, UPF0391 family	Function unknown [S]	0.81

NCBI Taxonomy

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Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	87.80 %
Unclassified	root	N/A	12.20 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	87.80 %
Unclassified	root	N/A	12.20 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	87.80 %
Unclassified	root	N/A	12.20 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	69.92 %
Unclassified	root	N/A	12.20 %
Bacteria incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis	0.81 %

Name	Rank	Taxonomy	Distribution
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	52.03 %
Unclassified	root	N/A	12.20 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	4.88 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	4.07 %
Candidatus Muproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Candidatus Muproteobacteria	0.81 %
Bacteria candidate phyla	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	0.81 %

Name	Rank	Taxonomy	Distribution
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	52.03 %
Unclassified	root	N/A	12.20 %
Rhodocyclales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Rhodocyclales	4.88 %
unclassified Gammaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria	1.63 %
Candidatus Muproteobacteria bacterium RBG_16_65_34	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Candidatus Muproteobacteria → Candidatus Muproteobacteria bacterium RBG_16_65_34	0.81 %
Candidatus Rokubacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	0.81 %
Thiotrichales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Thiotrichales	0.81 %

Name	Rank	Taxonomy	Distribution
unclassified Deltaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria	52.03 %
Unclassified	root	N/A	12.20 %
Rhodocyclaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Rhodocyclales → Rhodocyclaceae	4.88 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	1.63 %
Thiotrichaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Thiotrichales → Thiotrichaceae	0.81 %
unclassified Candidatus Rokubacteria	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria	0.81 %
Candidatus Muproteobacteria bacterium RBG_16_65_34	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Candidatus Muproteobacteria → Candidatus Muproteobacteria bacterium RBG_16_65_34	0.81 %

Name	Rank	Taxonomy	Distribution
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	51.22 %
Unclassified	root	N/A	12.20 %
Azospira	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Rhodocyclales → Rhodocyclaceae → Azospira	4.88 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	1.63 %
Candidatus Rokubacteria bacterium 13_1_20CM_2_70_7	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium 13_1_20CM_2_70_7	0.81 %
Deltaproteobacteria bacterium RBG_16_49_23	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium RBG_16_49_23	0.81 %
Thioploca	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Thiotrichales → Thiotrichaceae → Thioploca	0.81 %
Candidatus Muproteobacteria bacterium RBG_16_65_34	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Candidatus Muproteobacteria → Candidatus Muproteobacteria bacterium RBG_16_65_34	0.81 %

Name	Rank	Taxonomy	Distribution
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	51.22 %
Unclassified	root	N/A	12.20 %
Azospira restricta	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Rhodocyclales → Rhodocyclaceae → Azospira → Azospira restricta	4.88 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	1.63 %
Thioploca ingrica	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Thiotrichales → Thiotrichaceae → Thioploca → Thioploca ingrica	0.81 %
Candidatus Rokubacteria bacterium 13_1_20CM_2_70_7	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium 13_1_20CM_2_70_7	0.81 %
Deltaproteobacteria bacterium RBG_16_49_23	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium RBG_16_49_23	0.81 %
Candidatus Muproteobacteria bacterium RBG_16_65_34	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Candidatus Muproteobacteria → Candidatus Muproteobacteria bacterium RBG_16_65_34	0.81 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2067725002\|GPICC_F5MS3JC01ALLOW	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	514	Open in IMG/M
2162886013\|SwBSRL2_contig_13621526	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	986	Open in IMG/M
2162886013\|SwBSRL2_contig_7032999	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	978	Open in IMG/M
3300000550\|F24TB_11404345	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	758	Open in IMG/M
3300000559\|F14TC_102666851	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1704	Open in IMG/M
3300000953\|JGI11615J12901_14588798	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	802	Open in IMG/M
3300001372\|YBBDRAFT_1187915	Not Available	720	Open in IMG/M
3300003324\|soilH2_10047397	All Organisms → cellular organisms → Bacteria	3964	Open in IMG/M
3300004022\|Ga0055432_10020204	All Organisms → cellular organisms → Bacteria → Proteobacteria	1380	Open in IMG/M
3300004057\|Ga0055496_10021015	Not Available	1206	Open in IMG/M
3300004145\|Ga0055489_10316299	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	502	Open in IMG/M
3300004157\|Ga0062590_100209912	Not Available	1419	Open in IMG/M
3300004463\|Ga0063356_100265877	All Organisms → cellular organisms → Bacteria → Proteobacteria	2093	Open in IMG/M
3300004463\|Ga0063356_104859557	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	578	Open in IMG/M
3300004479\|Ga0062595_102704306	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	500	Open in IMG/M
3300004480\|Ga0062592_101154150	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	721	Open in IMG/M
3300005093\|Ga0062594_100560981	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	987	Open in IMG/M
3300005093\|Ga0062594_101459571	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	699	Open in IMG/M
3300005295\|Ga0065707_10686390	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	646	Open in IMG/M
3300005353\|Ga0070669_100072876	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	2543	Open in IMG/M
3300005447\|Ga0066689_10096586	All Organisms → cellular organisms → Bacteria	1687	Open in IMG/M
3300005455\|Ga0070663_101751272	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	556	Open in IMG/M
3300005544\|Ga0070686_100024519	All Organisms → cellular organisms → Bacteria	3617	Open in IMG/M
3300005549\|Ga0070704_101132413	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	712	Open in IMG/M
3300005558\|Ga0066698_10948900	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	548	Open in IMG/M
3300005563\|Ga0068855_101173335	All Organisms → cellular organisms → Bacteria → Proteobacteria	800	Open in IMG/M
3300005764\|Ga0066903_105080590	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	697	Open in IMG/M
3300005843\|Ga0068860_101749180	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	644	Open in IMG/M
3300006049\|Ga0075417_10663078	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	534	Open in IMG/M
3300006852\|Ga0075433_11867671	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	516	Open in IMG/M
3300006871\|Ga0075434_100364239	All Organisms → cellular organisms → Bacteria	1466	Open in IMG/M
3300006871\|Ga0075434_101254410	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Rhodocyclales → Rhodocyclaceae → Azospira → Azospira restricta	753	Open in IMG/M
3300006871\|Ga0075434_101630635	Not Available	653	Open in IMG/M
3300006880\|Ga0075429_100429143	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1158	Open in IMG/M
3300006881\|Ga0068865_101599487	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	586	Open in IMG/M
3300007076\|Ga0075435_101532453	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Rhodocyclales → Rhodocyclaceae → Azospira → Azospira restricta	585	Open in IMG/M
3300009094\|Ga0111539_11415937	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Rhodocyclales → Rhodocyclaceae → Azospira → Azospira restricta	806	Open in IMG/M
3300009094\|Ga0111539_11671529	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Rhodocyclales → Rhodocyclaceae → Azospira → Azospira restricta	738	Open in IMG/M
3300009100\|Ga0075418_10620805	All Organisms → cellular organisms → Bacteria	1164	Open in IMG/M
3300009100\|Ga0075418_12317576	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	586	Open in IMG/M
3300009137\|Ga0066709_101631154	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	921	Open in IMG/M
3300009147\|Ga0114129_12593093	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	605	Open in IMG/M
3300009156\|Ga0111538_10623076	Not Available	1368	Open in IMG/M
3300009167\|Ga0113563_12086808	Not Available	679	Open in IMG/M
3300009678\|Ga0105252_10371238	Not Available	652	Open in IMG/M
3300010360\|Ga0126372_12116306	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	611	Open in IMG/M
3300010371\|Ga0134125_10746142	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	1078	Open in IMG/M
3300010373\|Ga0134128_10215662	All Organisms → cellular organisms → Bacteria	2158	Open in IMG/M
3300010399\|Ga0134127_10113570	All Organisms → cellular organisms → Bacteria → Proteobacteria	2398	Open in IMG/M
3300010400\|Ga0134122_10119570	All Organisms → cellular organisms → Bacteria	2109	Open in IMG/M
3300010400\|Ga0134122_10221843	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	1580	Open in IMG/M
3300010400\|Ga0134122_10300286	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1378	Open in IMG/M
3300010401\|Ga0134121_11666467	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	660	Open in IMG/M
3300011119\|Ga0105246_12511368	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	507	Open in IMG/M
3300011414\|Ga0137442_1056611	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Thiotrichales → Thiotrichaceae → Thioploca → Thioploca ingrica	801	Open in IMG/M
3300011435\|Ga0137426_1106307	Not Available	795	Open in IMG/M
3300012034\|Ga0137453_1065248	Not Available	685	Open in IMG/M
3300012208\|Ga0137376_10320002	All Organisms → cellular organisms → Bacteria → Proteobacteria	1346	Open in IMG/M
3300012350\|Ga0137372_10002968	All Organisms → cellular organisms → Bacteria	16473	Open in IMG/M
3300012355\|Ga0137369_10060309	All Organisms → cellular organisms → Bacteria	3262	Open in IMG/M
3300012485\|Ga0157325_1029137	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	543	Open in IMG/M
3300012929\|Ga0137404_10994120	All Organisms → cellular organisms → Bacteria	767	Open in IMG/M
3300012929\|Ga0137404_12013179	All Organisms → cellular organisms → Bacteria → Proteobacteria → Candidatus Muproteobacteria → Candidatus Muproteobacteria bacterium RBG_16_65_34	539	Open in IMG/M
3300012930\|Ga0137407_10989691	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	796	Open in IMG/M
3300012948\|Ga0126375_10180284	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1365	Open in IMG/M
3300013100\|Ga0157373_11267109	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	557	Open in IMG/M
3300013297\|Ga0157378_12010521	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	628	Open in IMG/M
3300013297\|Ga0157378_12823426	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	538	Open in IMG/M
3300013307\|Ga0157372_11927623	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Rhodocyclales → Rhodocyclaceae → Azospira → Azospira restricta	679	Open in IMG/M
3300014497\|Ga0182008_10722879	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	571	Open in IMG/M
3300014873\|Ga0180066_1098046	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	603	Open in IMG/M
3300014877\|Ga0180074_1091179	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	679	Open in IMG/M
3300014881\|Ga0180094_1024240	All Organisms → cellular organisms → Bacteria	1200	Open in IMG/M
3300015258\|Ga0180093_1203898	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	503	Open in IMG/M
3300015371\|Ga0132258_10202083	All Organisms → cellular organisms → Bacteria	4821	Open in IMG/M
3300015371\|Ga0132258_10510311	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	3008	Open in IMG/M
3300015371\|Ga0132258_10555879	All Organisms → cellular organisms → Bacteria	2877	Open in IMG/M
3300015371\|Ga0132258_12178612	All Organisms → cellular organisms → Bacteria	1392	Open in IMG/M
3300015372\|Ga0132256_103765361	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	510	Open in IMG/M
3300015374\|Ga0132255_100046312	All Organisms → cellular organisms → Bacteria	5632	Open in IMG/M
3300015374\|Ga0132255_100756039	All Organisms → cellular organisms → Bacteria → Proteobacteria	1447	Open in IMG/M
3300015374\|Ga0132255_102097343	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	861	Open in IMG/M
3300015374\|Ga0132255_102643122	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	767	Open in IMG/M
3300017927\|Ga0187824_10084219	All Organisms → cellular organisms → Bacteria	1010	Open in IMG/M
3300018028\|Ga0184608_10066808	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1450	Open in IMG/M
3300018031\|Ga0184634_10003137	All Organisms → cellular organisms → Bacteria	5255	Open in IMG/M
3300018053\|Ga0184626_10048295	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1779	Open in IMG/M
3300018063\|Ga0184637_10449977	All Organisms → cellular organisms → Bacteria	758	Open in IMG/M
3300018079\|Ga0184627_10381438	Not Available	735	Open in IMG/M
3300018084\|Ga0184629_10030986	All Organisms → cellular organisms → Bacteria → Proteobacteria	2313	Open in IMG/M
3300018469\|Ga0190270_10379366	Not Available	1299	Open in IMG/M
3300019228\|Ga0180119_1355113	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	650	Open in IMG/M
3300019789\|Ga0137408_1452207	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	4160	Open in IMG/M
3300020004\|Ga0193755_1083152	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium RBG_16_49_23	1026	Open in IMG/M
3300020061\|Ga0193716_1038388	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	2294	Open in IMG/M
3300020197\|Ga0194128_10245011	Not Available	928	Open in IMG/M
3300021090\|Ga0210377_10786486	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	515	Open in IMG/M
3300024056\|Ga0124853_1300790	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	2104	Open in IMG/M
3300025164\|Ga0209521_10104627	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1810	Open in IMG/M
3300025289\|Ga0209002_10689102	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	536	Open in IMG/M
3300025916\|Ga0207663_10719534	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	791	Open in IMG/M
3300025923\|Ga0207681_10049016	All Organisms → cellular organisms → Bacteria	2853	Open in IMG/M
3300025926\|Ga0207659_10760330	All Organisms → cellular organisms → Bacteria → Proteobacteria	832	Open in IMG/M
3300025945\|Ga0207679_10465873	Not Available	1123	Open in IMG/M
3300026053\|Ga0208422_1050708	Not Available	505	Open in IMG/M
3300026320\|Ga0209131_1046495	All Organisms → cellular organisms → Bacteria → Proteobacteria	2467	Open in IMG/M
3300026535\|Ga0256867_10028794	All Organisms → cellular organisms → Bacteria	2334	Open in IMG/M
3300026536\|Ga0209058_1311658	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	542	Open in IMG/M
3300027647\|Ga0214468_1057032	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1011	Open in IMG/M
3300027650\|Ga0256866_1095721	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	800	Open in IMG/M
3300027665\|Ga0209983_1003241	All Organisms → cellular organisms → Bacteria → Proteobacteria	3491	Open in IMG/M
3300027691\|Ga0209485_1197629	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	625	Open in IMG/M
3300027873\|Ga0209814_10350540	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	646	Open in IMG/M
3300030006\|Ga0299907_10392300	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1117	Open in IMG/M
3300031228\|Ga0299914_11182099	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	613	Open in IMG/M
3300031947\|Ga0310909_10301459	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1343	Open in IMG/M
3300031949\|Ga0214473_12012287	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	563	Open in IMG/M
3300032002\|Ga0307416_100074732	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	2833	Open in IMG/M
3300032005\|Ga0307411_10683127	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	892	Open in IMG/M
3300032180\|Ga0307471_101505064	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium 13_1_20CM_2_70_7	831	Open in IMG/M
3300032770\|Ga0335085_10805074	Not Available	1034	Open in IMG/M
3300033412\|Ga0310810_11467851	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Rhodocyclales → Rhodocyclaceae → Azospira → Azospira restricta	511	Open in IMG/M
3300033486\|Ga0316624_11649702	All Organisms → cellular organisms → Bacteria	591	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	65.04%
Host-Associated	Host-Associated	34.96%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	45.53%
Plants	Host-Associated → Plants	34.96%
Aquatic	Environmental → Aquatic	19.51%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	45.53%
Rhizosphere	Host-Associated → Plants → Rhizosphere	22.76%
Rhizoplane	Host-Associated → Plants → Rhizoplane	12.20%
Sediment	Environmental → Aquatic → Sediment	11.38%
Freshwater	Environmental → Aquatic → Freshwater	4.88%
Marine	Environmental → Aquatic → Marine	3.25%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	38.21%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	17.89%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	11.38%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	6.50%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	5.69%
Loam	Environmental → Terrestrial → Soil → Loam	4.88%
Soil	Host-Associated → Plants → Rhizosphere → Soil	4.88%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	2.44%
Wetlands	Environmental → Aquatic → Marine → Wetlands	2.44%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	2.44%
Sediment	Environmental → Aquatic → Freshwater → Sediment	1.63%
Lake	Environmental → Aquatic → Freshwater → Lake	0.81%
Intertidal Zone	Environmental → Aquatic → Marine → Intertidal Zone	0.81%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	22.76%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	17.89%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	11.38%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	6.50%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	5.69%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	5.69%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	5.69%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	4.88%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	2.44%
Uranium Contaminated	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated	2.44%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	2.44%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	2.44%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	1.63%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	1.63%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	1.63%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	1.63%
Unclassified	Environmental → Aquatic → Freshwater → Lake → Unclassified	0.81%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	0.81%
Sediment	Environmental → Aquatic → Marine → Intertidal Zone → Sediment	0.81%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	0.81%

Habitat	Taxonomy	Distribution
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	11.38%
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	6.50%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	6.50%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	5.69%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	5.69%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	5.69%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	4.88%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	4.06%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	4.06%
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	2.44%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere	2.44%
Soil	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated → Soil	2.44%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	2.44%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	1.63%
Freshwater Wetlands	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Freshwater Wetlands	1.63%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.63%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	1.63%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	1.63%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	1.63%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	1.63%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	1.63%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	1.63%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	1.63%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.63%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	1.63%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	1.63%
Freshwater Lake	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake	0.81%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	0.81%
Marine Estuarine	Environmental → Aquatic → Marine → Intertidal Zone → Sediment → Marine Estuarine	0.81%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.81%
Sugarcane Root And Bulk Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Sugarcane Root And Bulk Soil	0.81%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.81%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.81%
Natural And Restored Wetlands	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Natural And Restored Wetlands	0.81%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	0.81%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	0.81%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	0.81%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.81%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	0.81%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Rhizosphere	0.81%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.81%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	0.81%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	0.81%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.81%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2067725002	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
2162886013	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 Bulk Soil	Environmental	Open in IMG/M
3300000550	Amended soil microbial communities from Kansas Great Prairies, USA - BrdU amended with acetate total DNA F2.4 TB clc assemly	Environmental	Open in IMG/M
3300000559	Amended soil microbial communities from Kansas Great Prairies, USA - control no BrdU total DNA F1.4 TC clc assemly	Environmental	Open in IMG/M
3300000953	Soil microbial communities from Great Prairies - Kansas Corn soil	Environmental	Open in IMG/M
3300001372	YB-Back-sed	Environmental	Open in IMG/M
3300003324	Sugarcane bulk soil Sample H2	Environmental	Open in IMG/M
3300004022	Wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Browns_ThreeSqA_D1	Environmental	Open in IMG/M
3300004057	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - RushSE_TuleC_D2	Environmental	Open in IMG/M
3300004145	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - RushOxbow_ThreeSqB_D2	Environmental	Open in IMG/M
3300004157	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - - Combined assembly of AARS Block 2	Environmental	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300004480	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 4	Environmental	Open in IMG/M
3300005093	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All Blocks	Environmental	Open in IMG/M
3300005295	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL3	Environmental	Open in IMG/M
3300005353	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG	Host-Associated	Open in IMG/M
3300005447	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_138	Environmental	Open in IMG/M
3300005455	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG	Host-Associated	Open in IMG/M
3300005544	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG	Environmental	Open in IMG/M
3300005549	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG	Environmental	Open in IMG/M
3300005558	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_147	Environmental	Open in IMG/M
3300005563	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2	Host-Associated	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005843	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2	Host-Associated	Open in IMG/M
3300006049	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1	Host-Associated	Open in IMG/M
3300006852	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2	Host-Associated	Open in IMG/M
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated	Open in IMG/M
3300006880	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3	Host-Associated	Open in IMG/M
3300006881	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2	Host-Associated	Open in IMG/M
3300007076	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4	Host-Associated	Open in IMG/M
3300009094	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)	Host-Associated	Open in IMG/M
3300009100	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2	Host-Associated	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300009167	Freshwater wetland microbial communities from Ohio, USA, analyzing the effect of biotic and abiotic controls - Mud 3 Core 4 Depth 3 metaG - Illumina Assembly (version 2)	Environmental	Open in IMG/M
3300009678	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT100	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010371	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1	Environmental	Open in IMG/M
3300010373	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4	Environmental	Open in IMG/M
3300010399	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3	Environmental	Open in IMG/M
3300010400	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2	Environmental	Open in IMG/M
3300010401	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-1	Environmental	Open in IMG/M
3300011119	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG	Host-Associated	Open in IMG/M
3300011414	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT266_2	Environmental	Open in IMG/M
3300011435	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT660_2	Environmental	Open in IMG/M
3300012034	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT526_2	Environmental	Open in IMG/M
3300012208	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_20_16 metaG	Environmental	Open in IMG/M
3300012350	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_60_16 metaG	Environmental	Open in IMG/M
3300012355	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_113_16 metaG	Environmental	Open in IMG/M
3300012485	Arabidopsis rhizosphere microbial communities from North Carolina - M.Oy.7.old.040610	Host-Associated	Open in IMG/M
3300012929	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012930	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012948	Tropical forest soil microbial communities from Panama - MetaG Plot_14	Environmental	Open in IMG/M
3300013100	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG	Host-Associated	Open in IMG/M
3300013297	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG	Host-Associated	Open in IMG/M
3300013307	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG	Host-Associated	Open in IMG/M
3300014497	Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG	Host-Associated	Open in IMG/M
3300014873	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLT200B_16_10D	Environmental	Open in IMG/M
3300014877	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLT366_16_10D	Environmental	Open in IMG/M
3300014881	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLIBT47_16_1Da	Environmental	Open in IMG/M
3300015258	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLIBT45_16_1Da	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300017927	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SourceSoil_4	Environmental	Open in IMG/M
3300018028	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_30_coex	Environmental	Open in IMG/M
3300018031	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_200_b1	Environmental	Open in IMG/M
3300018053	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_60_b1	Environmental	Open in IMG/M
3300018063	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_127_b2	Environmental	Open in IMG/M
3300018079	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_127_b1	Environmental	Open in IMG/M
3300018084	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_32_b1	Environmental	Open in IMG/M
3300018469	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 320 T	Environmental	Open in IMG/M
3300019228	Metatranscriptome of soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaT ERMLT790_16_1Ra (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019789	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300020004	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H1a2	Environmental	Open in IMG/M
3300020061	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U2c1	Environmental	Open in IMG/M
3300020197	Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015037 Kigoma Deep Cast 65m	Environmental	Open in IMG/M
3300021090	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_65_b1 redo	Environmental	Open in IMG/M
3300024056	Freshwater wetland microbial communities from Ohio, USA, analyzing the effect of biotic and abiotic controls - Mud 3 Core 4 Depth 3 metaG (PacBio error correction)	Environmental	Open in IMG/M
3300025164	Soil microbial communities from Rifle, Colorado, USA - sediment 19ft 4	Environmental	Open in IMG/M
3300025289	Soil microbial communities from Rifle, Colorado, USA - sediment 16ft 2	Environmental	Open in IMG/M
3300025916	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300025923	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025926	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025945	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026053	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - RushOxbow_ThreeSqA_D1 (SPAdes)	Environmental	Open in IMG/M
3300026320	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_40cm (SPAdes)	Environmental	Open in IMG/M
3300026535	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT150D86 (HiSeq)	Environmental	Open in IMG/M
3300026536	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_147 (SPAdes)	Environmental	Open in IMG/M
3300027647	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT155D38 HiSeq	Environmental	Open in IMG/M
3300027650	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT152D67 HiSeq	Environmental	Open in IMG/M
3300027665	Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M1 S PM (SPAdes)	Host-Associated	Open in IMG/M
3300027691	Agricultural soil microbial communities from Utah to study Nitrogen management - NC AS100 (SPAdes)	Environmental	Open in IMG/M
3300027873	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1 (SPAdes)	Host-Associated	Open in IMG/M
3300030006	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT152D67	Environmental	Open in IMG/M
3300031228	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT153D57	Environmental	Open in IMG/M
3300031947	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.T000H	Environmental	Open in IMG/M
3300031949	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT98D197	Environmental	Open in IMG/M
3300032002	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3	Host-Associated	Open in IMG/M
3300032005	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1	Host-Associated	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032770	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.5	Environmental	Open in IMG/M
3300033412	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - NC	Environmental	Open in IMG/M
3300033486	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_N3_C1_D5_A	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
GPICC_04205720	2067725002	Soil	QQQFDLQIAGWSDDGTIRLSDGTVTLLLTKSQIRPKSGVQYFGIQVSDLSSIKKRLQTGGVAVSENANGQIKFEDPEGNQVVVSENGWVN
SwBSRL2_0153.00002190	2162886013	Switchgrass Rhizosphere	TKSQVRPKSGVQYFGIQVDDLTRTKKRLQDDGVVVSEEGNNQIQFTDPEGNRVVVSQQAW
SwBSRL2_0738.00003970	2162886013	Switchgrass Rhizosphere	KSQVRPKSGVQYFGIQVDDLTRTKKRLQDDGVVVSEEGNNQIQFTDPEGNRVVVSQQAWY
F24TB_114043451	3300000550	Soil	QFDLKIAGWSDDGTIRLSDGTVTLLLTKSQIRPKSGVQYFGIQVSDLSSIKKRLQTGGVAVSENANGQIKFEDPEGNQVVVSENGWVN*
F14TC_1026668511	3300000559	Soil	TLLLTKSQIRPRGGVQYFGIQVGDLAGVKKRLQKDGVVVLEIPNAQIQLVDPEGNRVVLSEQAWN*
JGI11615J12901_145887982	3300000953	Soil	VTLLLTKSQVRPKSGVQYFGIQVSDLTGTKKQLQDGGVAVSEASPRQIQFTDPEGNRVVVSEGGWIN*
YBBDRAFT_11879151	3300001372	Marine Estuarine	IRLSDGTVTLLLTKSQVRPKKGVQYFGIQVGDLAALKKHLQDGGVAVSEGAQGQIEFNDPEGNRVVVSEQGWAN*
soilH2_100473976	3300003324	Sugarcane Root And Bulk Soil	RSKSGVQYFGIQVDDLQFVKRRLQDGGVALSDHADGQIQFNDPEGNRVVVSESGWIN*
Ga0055432_100202044	3300004022	Natural And Restored Wetlands	YQQQFDLKIVGWSDDGTIRLSDGTVTLLLTKSQVRPRSGVQYFGIQVSDLAGVKKRLQDGGVAISEPAVGQIQFNDPEGNQVVVSESGWVQ*
Ga0055496_100210152	3300004057	Natural And Restored Wetlands	LTKSKVRPKDGVQYFGIQVGDLAGLKKRLQEGGVAVAESGAGKIQFKDPEGNQVELSERGWVN*
Ga0055489_103162992	3300004145	Natural And Restored Wetlands	DGKVGLLLTMTQVRPKQGVQYFGIRVGDLAALKKRLQSGGVAVSDGVQGQIQLNDPEGNHVLISEKGWAN*
Ga0062590_1002099121	3300004157	Soil	LLLTKSQVRPKSGVQYFGIQVDDLTRTKKRLQDDGVAVSEVGRNQVQFTDPEGNRVVVSQQAWNNLS*
Ga0063356_1002658772	3300004463	Arabidopsis Thaliana Rhizosphere	VTLLLTKSQVRPKSGVQYFGIQVDNLARTKKRLQDDGVKISDAGKDEIQFTDPEGNRVVVSQDSWAN*
Ga0063356_1048595571	3300004463	Arabidopsis Thaliana Rhizosphere	DDGTMRLSDGTVTLLLTKSQVGPKSGVQYFGIQVSDLDGVRKSLQDGGVEIRESTPAQIRFTDPEGNQVVVSQAGWMN*
Ga0062595_1027043062	3300004479	Soil	LVGWTDDGTVRLSDGTVTLLLTKSQVRPKGGVQYFGIQVSDLVGTKKRLQHDGVAVSEAGGGQIQFTDPEGNRVVVSEAGWVN*
Ga0062592_1011541502	3300004480	Soil	PKSGVQYFGIQVNDLTGIKKQLQDDGVAVSESDSGQIQFTDPEGNRVVLSEGRWTN*
Ga0062594_1005609811	3300005093	Soil	DGTVTLLLTKSQVRPKSGVQYFGIQVNDLTGIKKQLQDDGVAVSESDSGQIQFTDPEGNRVVLSEGRWTN*
Ga0062594_1014595711	3300005093	Soil	SQVRPKSGVQYFGIQVDDLTRTKKRLQDDGVSVSDADSNQIQFTDPEGNRVVVSQQAWN*
Ga0065707_106863902	3300005295	Switchgrass Rhizosphere	TVTLLLTKSQVRPKSGVQYFGIQVDDLTRTKKRLQDDGVVVSEEGNNQIQFTDPEGNRVVVSQQAWY*
Ga0070669_1000728761	3300005353	Switchgrass Rhizosphere	LSDGTVTLLLTKSQVRPKSGVQYFGIQVDDLTRTKKRLQDDGVSVSDADSNQIQFTDPEGNRVVVSQQAWN*
Ga0066689_100965861	3300005447	Soil	EFYQQQFDLKIAGWSDDGTIRLSDGTVTLLLTKSQIRPKSGVQYFGIQVSDLAGVKKHLQGGGVEIRDGSQEIRLTDPEGNQVIVSQSGWAN*
Ga0070663_1017512722	3300005455	Corn Rhizosphere	LSDGTVTLLLTKSQVRPKSGVQYFGIQVGDLAGIKKSLQDGGVEIREASQEVRLTDPEGNQMVISQTGWAN*
Ga0070686_1000245196	3300005544	Switchgrass Rhizosphere	TVRLSDGTVTLLLTKSQVRPKSGVQYFGIQVDDLTRTKKRLQDDGVSVSDADSNQIQFTDPEGNRVVVSQQAWN*
Ga0070704_1011324131	3300005549	Corn, Switchgrass And Miscanthus Rhizosphere	LTKSQVRPKSGVQYFGIQVDDLTRTKKRLQDDGVSVSDADSNQIQFTDPEGNRVVVSQQAWN*
Ga0066698_109489002	3300005558	Soil	QQQFDLKIAGWSDDGTIRLSDGTVTLLLTKSQVRPKSGVQYFGIQVSDLAGVKKHLQGGGVEIRDGSQEIRLTDPEGNQVIVSQSGWAN*
Ga0068855_1011733352	3300005563	Corn Rhizosphere	LLTKSQVRPKSGVQYFGIQVDDLTRTKKRLQDDGVAVSEVGRNQVQFTDPEGNRVVVSQQAWNNLS*
Ga0066903_1050805902	3300005764	Tropical Forest Soil	VTLLLTKSQVRPKSGVQYFGIQVSDLDGVKQRLQTDGVAISENAADQIEFNDPEGNRVVISGHAWN*
Ga0068860_1017491801	3300005843	Switchgrass Rhizosphere	TDDGTVRLSDGTVTLLLTKSQVRPKGGVQYFGIQVSDLVGTKKRLQHDGVAVSEAGSGQIQFTDPEGNRVVVSEAGWVN*
Ga0075417_106630782	3300006049	Populus Rhizosphere	GWSDDGTIRLSDGTVTLLLTKSQIRPKSGVQYFGIQVSDLSSIKKRLQTGGVAVSENANGQIKFEDPEGNQVVVSENGWVN*
Ga0075433_118676713	3300006852	Populus Rhizosphere	LLLTKSQVRPKGGVQYFGIQVSDLVGTKKRLQHDGVAVSEAGSGQIQFTDPEGNRVVVSEGGWVN*
Ga0075434_1003642393	3300006871	Populus Rhizosphere	RLSDGTVTLLLTKSQVRPKSGVQYFGIQVSDLAGTKKRLQHDGVAVSEAGSGQIQFTDPEGNRVVVSEAGWVN*
Ga0075434_1012544102	3300006871	Populus Rhizosphere	SQVRPKSGVQYFGIQVDDLTRTKKRLQDDGVAVSEAGRNQVQFTDPEGNRVVVSQQAWN*
Ga0075434_1016306352	3300006871	Populus Rhizosphere	SGVQYFGIQVSDLPEVKKRLQVGGVAVSEIANDQIQLNDPEGNRVVVSEHAWN*
Ga0075429_1004291431	3300006880	Populus Rhizosphere	RLSDGTVTLLLTKTQVRPKSGVQYFGIQVSDVATLKRSLQDGGVAVSEDGPGQIHFIDPEGNRVAVSQNGWTN*
Ga0068865_1015994872	3300006881	Miscanthus Rhizosphere	GWTDDGTVRLSDGTVTLLLTKSQVRPKSGVQYFGIQVSDLAGTKKRLQHDGVAVSEADSGQIQFTDPEGNRVVVSEAGWVN*
Ga0075435_1015324531	3300007076	Populus Rhizosphere	SDGTVTLLLTKSQVRPKSGVQYFGIQVDNLARTKKRLQDDGVKIANAGDDEIQFTDPEGNRVVVSQQDWN*
Ga0111539_114159371	3300009094	Populus Rhizosphere	TKSQVRPKSGVQYFGIQVDDLTRTKKRLQDDGVAVSEAGRNQVQFTDPEGNRVVVSQQAWN*
Ga0111539_116715291	3300009094	Populus Rhizosphere	RLSDGTVTLLLTKSQVRPKSGVQYFGIQVDDLARTKKRLQDDGVKVSEAGSGEFQFTDPEGNRVIVSGQAWN*
Ga0075418_106208051	3300009100	Populus Rhizosphere	GTVTLLLTKSQVRPKGGVQYFGIQVSDLVGTKKRLQHDGVAVSEAGSGQIQFTDPEGNRVVVSEAGWVN*
Ga0075418_123175761	3300009100	Populus Rhizosphere	TLLLTKTQVRPKSGVQYFGIQVSDVATLKRSLQDGGVAVSEDGPGQIHFIDPEGNRVAVSQNGWTN*
Ga0066709_1016311542	3300009137	Grasslands Soil	WSDDGTIRLSDGTVTLLLTKSQVRPKSGVQYFGIQVSDLSSIKKRLQTGGVALSENANGQIKFEDPEGNWVVVSEYAWN*
Ga0114129_125930932	3300009147	Populus Rhizosphere	DDGTIRLSDGIVTLLLTKSQVRPKSGVQYFGIQVDNLARTKERLQDDGVKVSDADSNQIQFTDPEGNRVVVSQQAWNDLS*
Ga0111538_106230761	3300009156	Populus Rhizosphere	KSQVRPKSGVQYFGIQVDDLARTKKRLQDDGVKVSEAGSGEFQFTDPEGNRVIVSGQAWN
Ga0113563_120868081	3300009167	Freshwater Wetlands	QVRPKGGVQYFGIQVSDVAGLKKRLQDGGVAVSDDSKGQIQFNDPEGNRVVVSESGWTT*
Ga0105252_103712382	3300009678	Soil	LLLTKSQVRPKSGVQYFGIQVGDLAGVKKRLQDGGVAVSDAAKGQIEFNDPEGNRVVVSESGWAN*
Ga0126372_121163061	3300010360	Tropical Forest Soil	ACEFYQQQLDLNLVGWTDDGTIRLSDGTVTLLLTKAQIRPKSGVQYFGIQVSDLSALKRRLQADDVAISQIGPDQIEFNDPEGNRVVVSDHAWS*
Ga0134125_107461422	3300010371	Terrestrial Soil	TLLLTKSQVRPKSGVQYFGIQVDDLTRTKKRLEDDGVAVSEVDSNQIQFTDPEGNRVVVSQQAWN*
Ga0134128_102156626	3300010373	Terrestrial Soil	SQVRPKSGVQYFGIQVDDLTRTKKRLQDDGVAVSEAGSNQVQFTDPEGNRVVVSDTNWAN
Ga0134127_101135701	3300010399	Terrestrial Soil	IRLSDGTVTLLLTKSQVRPKGGVQYFGIQVSDLEGVKKRLKDGGVVVRDGAQEIRLTDPEGNQVAISQSGWAN*
Ga0134122_101195704	3300010400	Terrestrial Soil	TKSQVRPKGGVQYFGIQVSDLVGTKKRLQHDGVAVSEAGSGQIQFTDPEGNRVVVSEAGWVN*
Ga0134122_102218433	3300010400	Terrestrial Soil	RLSDGTVTLLLTKSQVRPKSGVQYFGIQVDDLTRTKKRLEDDGVAVSEVDSNQIQFTDPEGNRVVVSQQAWN*
Ga0134122_103002862	3300010400	Terrestrial Soil	FGLQIAGWTDDGTIRLSDGTLTLMLTKSQVRPKGGVQYFGIQVSDVAGLKKRLRDGGVTVSDDSNGQIQFDDPEGNRVVVSESGWAN*
Ga0134121_116664672	3300010401	Terrestrial Soil	LLLIKSQVRPKSGVQYFGIQVDDLTRTKKRLQDDGVSVSDADSNQIQFTDPEGNRVVVSQQAWN*
Ga0105246_125113681	3300011119	Miscanthus Rhizosphere	MVVSLGMLVSVGNADQIRLSDGTVTLLLTKSQVRPKSGVQYFGIQVGDLAGIKKSLQDGGVEIREASQEVRLTDPEGNQMVISQTGWAN*
Ga0137442_10566113	3300011414	Soil	DEACEFYKQQFELNTVGRDHEGNIRLTDGTVALILTRSQIRPKSGVQYFGIQVGDLPGLKKRLQDGGVAVSAAAQGQIQFNDPEGNQVVVSESGWVI*
Ga0137426_11063072	3300011435	Soil	TIRLSDGTLTLMLTKSQVRPKGGVQYFGIQVSDMTGLKKRLQDGGVAVSDDAKGQIQFNDPEGNRVVVSESGWAN*
Ga0137453_10652481	3300012034	Soil	TLTLMLTKAQVRPKGGVQYFGIQVGDLAGVKERLQDGGVAVSESAKEQIQFNDPEGNRVVVSESGWAN*
Ga0137376_103200024	3300012208	Vadose Zone Soil	TVTLLLTKSKVRPKSGVQYFGIQVDDVARAKKRLQDDGVAVSEAGSGQIQFTDPEGNRVVISESGWLN*
Ga0137372_1000296828	3300012350	Vadose Zone Soil	FYQQQFDLKIAGWSDDGTIRLSDGTVTLLLTKSQIRPKSGVQYFGIQVSDLSAIKKRLQTGGVALSENANGQLQLNDPEGNQVVVSENGWMN*
Ga0137369_100603091	3300012355	Vadose Zone Soil	VRPKSGVQYFGIQVDDLKSVKRRLQDGGVALSENVKGQIQLNDPEANRVVVSEHAWN*
Ga0157325_10291372	3300012485	Arabidopsis Rhizosphere	LLLTKSQVRPKGGVQYFGIQVSDLVGTKKRLQHGGVAVSEAGSGQIQFTDPEGNRVVVSEAGWVN*
Ga0137404_109941203	3300012929	Vadose Zone Soil	LLLTKTQIRPKNGVQYFGIQVEDLQSVKRRLQEGGVALSENDNGQIQLTDPEANRVVVSENGW*
Ga0137404_120131791	3300012929	Vadose Zone Soil	IRLSDGTVTLLLTKSQIRPKSGVQYFGIQVSDLSAIKKRLQTGGVAVSENANDQLQLNDPEGNQVIVSENGWVN*
Ga0137407_109896912	3300012930	Vadose Zone Soil	TLLLTKSQVRPKSGVQYFGIQVSDLSSIKKRLQTGGVALSENANGQIKFEDPEGNQVVVSENGWLN*
Ga0126375_101802842	3300012948	Tropical Forest Soil	LLAKSQVRAKSGVQYFGIQVSDLAPVKKRLQDGGVAVSEASSGQIQLNDPEGNRVVISEIGWSN*
Ga0157373_112671092	3300013100	Corn Rhizosphere	DDGTVRLSVGTVTLLLTKSQVRPKSGVQYFGIQVDDLTRTKKRLQDDGVAVSEAGRNQVQFTDPEGNRVVVSQQAWNNLS*
Ga0157378_120105211	3300013297	Miscanthus Rhizosphere	DGTIRLSDGTVTLLLTKSQVRPKSGVQYFGIQVGDLAGIKKSLQDGGVEIREASQEVRLTDPEGNQMVISQTGWAN*
Ga0157378_128234261	3300013297	Miscanthus Rhizosphere	LSDGTVTLLLTKSQVRPKSGVQYFGIQVDDLTRTKKRLQDDGVAVSEVGRNQVQFTDPEGNRVVVSQQAWNNLS*
Ga0157372_119276231	3300013307	Corn Rhizosphere	SLRRTVTLLLTKSQVRPKSGVQYFGIQVDDLTRTKKRLQDDGVAVSEVGRNQVQFTDPEGNRVVVSQQAWNNLS*
Ga0182008_107228792	3300014497	Rhizosphere	LELVGWTDDGTVRLSDGTVTLLLTKSQVRPKSGVQYFGIQVTNLARTKKRLQDDGVAVSDADSNQIQFTDPEGNRVVVSQQAWNDLS*
Ga0180066_10980461	3300014873	Soil	LLLTKSQTRSKSGVQYFGIQVNDLSALKKGLEVGGVSVSESSKGQLQLNDPEGNRVVISESGWAN*
Ga0180074_10911791	3300014877	Soil	QQFDLKIAGWSDDGTIRLSDGTVTLLLTKSQVRPKSGVQYFGIQVNDLAGVKKSLQAGGVEIRDESQEIRLTDPEGNQVIVSQTGWAN*
Ga0180094_10242401	3300014881	Soil	TRPKNGVQYFGIQVNDLASVKKRLQDGSVAISEGAKGQIQFNDPEGNRVVVSENGWTN*
Ga0180093_12038981	3300015258	Soil	RLSDGTLTLMLTKSLVRPRGGVQYFGIQVSDMTGLKKRLQDGGVAVSDDAKGQIQFDDPEGNRVVVSESGWAN*
Ga0132258_102020831	3300015371	Arabidopsis Rhizosphere	VRPKSGVQYFGIQVNDLTGIKKQLQDDGVAVSESDSGQIQFTDPEGNRVVLSEGRWTN*
Ga0132258_105103115	3300015371	Arabidopsis Rhizosphere	GTVRLSDGTVTLLLTKSQVRPKSGVQYFGIQVDDLTRTKKRLQDDGVSVSDADSNQIQFTDPEGNRVVVSQQAWN*
Ga0132258_105558796	3300015371	Arabidopsis Rhizosphere	TLLLTKSQVRPKSGVQYFGIQVDDLARTKKRLQADGVSVSESSSEQFQFTDPEGNRVVVSQQAWN*
Ga0132258_121786121	3300015371	Arabidopsis Rhizosphere	FDLELVGWTDDGTVRLSDGTVTLLLTKSQVRPKSGVQYFGIQVDDLTRTKKRLQDDGVVVSEEGNNQIQFTDPEGNRVVVSQQAWY*
Ga0132256_1037653611	3300015372	Arabidopsis Rhizosphere	WTDDGTVRLSDGTVTLLLTKSQVRPKSGVQYFGIQVDDLTRTKKRLQDDGVVVSEEGNNQIQFTDPEGNRVVVSQQAWS*
Ga0132255_1000463129	3300015374	Arabidopsis Rhizosphere	DDGTVRLSDGTVTLLLTKSQVRPKSGVQYFGIQVSDLARTKKRLQDDGVAVSDAGSNQIQFTDPEGNRVVVSQQAWN*
Ga0132255_1007560392	3300015374	Arabidopsis Rhizosphere	FDLELVGWTDDGTVRLSDGTVTLLLTKSQVRPKSGVQYFGIQVDDLARTKKRLQDDGVKVSEAGSGEFQFTDPEGNRVIVSGQAWN*
Ga0132255_1020973431	3300015374	Arabidopsis Rhizosphere	SQVRPKSGVQYFGIQVDDLARTKKRLQADGVSVSESGSEQFQFTDPEGNRVVVSQQAWN*
Ga0132255_1026431222	3300015374	Arabidopsis Rhizosphere	DLELVGWTDDGTVRLSDGTVTLLLTKSQVRPKSGVQYFGIQVDDLTRTKKRLQDDGVAVSEEGNNQIQFTDPEGNRVVVSQQAWY*
Ga0187824_100842193	3300017927	Freshwater Sediment	LSDGTVTLLLTKSQVRPKSGVQYFGIQVGDLAGLKKSLQDNGIEVSENAADQIEFNDPEGNRVVVSGHAWN
Ga0184608_100668083	3300018028	Groundwater Sediment	TKSQIRPKNGVQYFGIQVQDLTAVKRRLQDGSVALSENAIGQIKLQDPEGNQVVISDSAWVN
Ga0184634_100031378	3300018031	Groundwater Sediment	VWQWLNKKIGTVSSEFHCVALVLTKAQVRPKSGVQYFGIQVSNLTDAKNCLQAGGVALSENANGQIQLNDPEGNRVVVSEHAWN
Ga0184626_100482951	3300018053	Groundwater Sediment	AACEFYQQQFDLKIAGWSDDGTIRLSDGTVTLLLTKSQVRPKSGVQYFGIQVDDFTSVKRRLQDGGVALSENANGQIQLNDPEGNQVVISESGWTN
Ga0184637_104499772	3300018063	Groundwater Sediment	VSSEFHCVALVLTKAQVRPKSGVQYFGIQVSNLTDAKNCLQAGGVALSENANGQIQLNDPEGNRVVVSEHAWN
Ga0184627_103814381	3300018079	Groundwater Sediment	LTKAQVRPKSGVQYFGIQVGDLAGLKKRLQDGGVAVSESDKGQIRFNDPEGNRVLVSETGWAN
Ga0184629_100309861	3300018084	Groundwater Sediment	SDGTVTLLLTKSQVRPKSGVQYFGIQVENLAGLKKRLQDGGVAISEPAVGQIQFNDPEGNRVVVSESGWVQ
Ga0190270_103793662	3300018469	Soil	SDGTLTLMLTKSQVRPKGGVQYFGIQVSDLGGLKKRLQDSGVSISDGAEGQIQFNDPEGNRVVVSERGWAN
Ga0180119_13551133	3300019228	Groundwater Sediment	ERDSDGNIRLSDGTVALLLTKNQLRAKGGVQYFGIQVSDLPDLKKRLQDGGVPVSDSAKGQIQFNDPEGNRVVVSESGWAN
Ga0137408_14522073	3300019789	Vadose Zone Soil	VTLLLTKSQVRPKSGVQYFGIQVSDLSSIEKRLQTGGVALSENANGQIKFEDPEGNQVVVSENGWVN
Ga0193755_10831521	3300020004	Soil	GTIRLSDGTVTLLLTKAQVRPKNGVQYFGIQVDDLKSVKRRLQDGGVAPSENANSQLQLNDPEGNWVLVSEVAWN
Ga0193716_10383881	3300020061	Soil	ACEFYQEQFDLKIAGWSDDGTIRLSDGTVTLLLTKSQVRPKSGVQYFGIQVDDIAGTKKRLQDDGVEIREASQEVGLTDPEGNQVVISQSGWGS
Ga0194128_102450111	3300020197	Freshwater Lake	DRKDGDIRLSDGICAIVLTKSQVRPKNGVQYFGIQVGDLAGLKKRLQEGGVAVSEAGAGQLQFTDPEGNRVEVSERGWVN
Ga0210377_107864862	3300021090	Groundwater Sediment	QFELNTVERDKDGNIRLSDGTVTLLLTNHQVRPKSGVQYFGIQVSDVGIVKKRLQDGGVVVSELRPDEIRFNDPEGNDVRVSERGWSN
Ga0124853_13007903	3300024056	Freshwater Wetlands	LSDGTLTLMLTKSLVRPRGGVQYFGIQVSDMTGLKKRLQDGGVAVSDDTKGQIQFDDPEGNRVVVSESGWAN
Ga0209521_101046271	3300025164	Soil	VPNPDEACEFYKGQFELEVVGRDSDGTIRLSDGTVTLLLTKSQVRPKNGVQYFGIQVDDIKSVKRRLQNSGVELSEKANGQIQLNDPEGNQVIVSENGWMN
Ga0209002_106891021	3300025289	Soil	QFDLKIVGWTDDGTIRLSDGTVTLLLTKSQVRPKSGVQYFGIQVDDLPAVKQRLIDGGVAISEVAERQLQLNDPEGNHVVVSEAGWLN
Ga0207663_107195342	3300025916	Corn, Switchgrass And Miscanthus Rhizosphere	TLLLTKSQVRPKSGVQYFGIQVNDLTGIKKQLQDDGVAVSESDSGQIQFTDPEGNRVVLSEGRWTN
Ga0207681_100490161	3300025923	Switchgrass Rhizosphere	GWTDDGTVRLSDGTVTLLLTKSQVRPKSGVQYFGIQVDDLTRTKKRLQDDGVSVSDADSNQIQFTDPEGNRVVVSQQAWN
Ga0207659_107603302	3300025926	Miscanthus Rhizosphere	DDGTVRLSDGTVTLLLTKSQVRPKSGVQYFGIQVDDLTRTKKRLQDNGVAVSEAGRNQVQFTDPEGNRVVVSQQAWNNLS
Ga0207679_104658731	3300025945	Corn Rhizosphere	LLLTKSQVRPKSGVQYFGIQVDDLTRTKKRLQDDGVVVSEEGNNQIQFTDPEGNRVVVSQQAWY
Ga0208422_10507081	3300026053	Natural And Restored Wetlands	MSDGTVALLLTKSKVRPKDGVQYFGIQVGDLAGLKKRLQEGGVAVAESGAGKIQFKDPEGNQVELSERGWVN
Ga0209131_10464951	3300026320	Grasslands Soil	LKTVERDHDGSIRLTDGTMALMLTKSQIRPKSGVQFFGIQVADLAGSKRRLEEGGVVVSEPAPGQMQFNDPEGNRVVVSESGWAN
Ga0256867_100287941	3300026535	Soil	SDGTVTLLLTRSQIRPKRGVQYFGIQVNDLATVKKRLRDDSVEVSEGASGQIQFNDPEGNRVEVSQSGWIGY
Ga0209058_13116581	3300026536	Soil	WSDDGTIRLSDGTVTLLLTKSQVRPKSGVQYFGIQVSDLAGVKKHLQGGGVEIRDGSQEIRLTDPEGNQVIVSQSGWAN
Ga0214468_10570322	3300027647	Soil	IVGWTDDGTIRLTDGTVTLLLTKSQIRPKTGVQYFGIQVDDVAGLKKSLQNSGVEISEKAADQLEFNDPEGNQVVVSGSAWN
Ga0256866_10957212	3300027650	Soil	VPDLAAACEFYQQQFDLKIVGWSDDGTIRLSDGTVTLLLTKSQVRPKSGVQYFGIQVNDLAGVKKSLQDGGVEIRDGSQEIRLTDPEGNQVLVSQTGWAN
Ga0209983_10032411	3300027665	Arabidopsis Thaliana Rhizosphere	EFYQQQFDLKLVGWTDDGTMRLSDGTVTLLLTKSQVGPKSGVQYFGIQVSDLDGVRKSLQDGGVEIRESTPAQIRFTDPEGNQVVVSQAGWMN
Ga0209485_11976291	3300027691	Agricultural Soil	CEFYQQQFSLKVVGWTDDGTIRLSDGTVTLLLTKSQVRPKSGVQYFGIQVGDLAGVKKSLQEGGVQIRDGAQEIRFTDPEGNQVAVSQSGWAN
Ga0209814_103505402	3300027873	Populus Rhizosphere	SQVRPKSGVQYFGIQVGDLSSIKKRLQTGGVALSENANDQIKFEDPEGNQVVVSEIGWVN
Ga0299907_103923002	3300030006	Soil	IVGWSDDGTIRLSDGTVTLLLTKSQVRPKSGVQYFGIQVNDLAGVKKSLQDGGVEIRDGSQEIRLTDPEGNQVLVSQTGWAN
Ga0299914_111820991	3300031228	Soil	QQFDLKIVGWTDDGTIRLTDGTVTLLLTKSQIRPKTGVQYFGIQVDDVAGLKKSLQNSGVEISEKAADQLEFNDPEGNRVVVSGSAWN
Ga0310909_103014594	3300031947	Soil	WTDDGAVRLSDGTVTLLLTKSQVRPKGGVQYFGIQVDNLGRTKKRLQDDGVKISDAGSSQIQFTDPEGNRVVVSEQAWN
Ga0214473_120122871	3300031949	Soil	LSDGTVTLLLTKTQTRPKNGVQYFGIQVNDLASVKTRLQDGSVAISESAHGQIQFNDPEGNRVVVSENGWTN
Ga0307416_1000747323	3300032002	Rhizosphere	VTLLLTKTQVHPKSGVQYFGIQVSDVATVKRSLQDSGVAVSEDGPGQIHFIDPEGNRVAVSQTGWTN
Ga0307411_106831272	3300032005	Rhizosphere	VRLSDGTVTLLLTKTQVRPKSGVQYCGIQVSDVATIKRSLQDSGFAVSEDGPGQIHFIDPEGNRVAVSQTGWTN
Ga0307471_1015050641	3300032180	Hardwood Forest Soil	RLSDGTVTLLLTKAQIRPKSGVQYFGIQVSDLSDLKRRLQADDVAISQIAPDQIEFNDPEGNRVVVSEHAWN
Ga0335085_108050741	3300032770	Soil	LLTKTQVRPKNGVQYFGIQVRDLAGLRKRLQEGGVPVSEPAQGQIQFNDPEGNRVVVSESGWAN
Ga0310810_114678512	3300033412	Soil	RLSDGTVTLLLTKSQVRPKSGVQYFGIQVDDLARTKKRLQDDGVKVSEAGSGEFQFTDPEGNRVIVSGQAWN
Ga0316624_116497021	3300033486	Soil	LLLTKSQVRPKSGVQYFGIQVGDLAGLKKSLQDNGIEVSENAADQIEFNDPEGNRVVVSGHAWN

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F070691

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences