NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Metagenome / Metatranscriptome Family F070430

Metagenome / Metatranscriptome Family F070430

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
Select file to download:
   Download


Overview

Basic Information
Family ID F070430
Family Type Metagenome / Metatranscriptome
Number of Sequences 123
Average Sequence Length 45 residues
Representative Sequence MKIALVAQNATPLHPRAGSGPDRDDIGLSELTRKLAGQGHQVTVY
Number of Associated Samples 113
Number of Associated Scaffolds 123

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 98.37 %
% of genes near scaffold ends (potentially truncated) 98.37 %
% of genes from short scaffolds (< 2000 bps) 91.87 %
Associated GOLD sequencing projects 112
AlphaFold2 3D model prediction Yes
3D model pTM-score0.33

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
Powered by Skylign

Most Common Taxonomy
Group Bacteria (96.748 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil
(27.642 % of family members)
Environment Ontology (ENVO) Unclassified
(21.951 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
(47.967 % of family members)


 ⦗Top⦘

Multiple Sequence Alignments

Select alignment to view:      

 ⦗Top⦘

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 13.70%    β-sheet: 0.00%    Coil/Unstructured: 86.30%
Feature Viewer
Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  		pTM-score: 0.33
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

 ⦗Top⦘

Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 123 Family Scaffolds
PF01740STAS 84.55
PF13581HATPase_c_2 12.20
PF13579Glyco_trans_4_4 0.81
PF03417AAT 0.81

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 123 Family Scaffolds
COG4927Predicted choloylglycine hydrolaseGeneral function prediction only [R] 0.81

 ⦗Top⦘

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
All OrganismsrootAll Organisms96.75 %
UnclassifiedrootN/A3.25 %

Visualization
Powered by ApexCharts

Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300004092|Ga0062389_102258644All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia717Open in IMG/M
3300004643|Ga0062591_101958933All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia603Open in IMG/M
3300005332|Ga0066388_107734047All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia538Open in IMG/M
3300005347|Ga0070668_100991252All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia755Open in IMG/M
3300005363|Ga0008090_15866605All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces614Open in IMG/M
3300005435|Ga0070714_100322006All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales1446Open in IMG/M
3300005451|Ga0066681_10899729All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces531Open in IMG/M
3300005545|Ga0070695_100075596All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia2216Open in IMG/M
3300005559|Ga0066700_10449010All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales905Open in IMG/M
3300005576|Ga0066708_10911983All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia548Open in IMG/M
3300005591|Ga0070761_10162291All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia1313Open in IMG/M
3300005591|Ga0070761_10567943All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii704Open in IMG/M
3300005610|Ga0070763_10296686All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales887Open in IMG/M
3300005921|Ga0070766_11193153All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia526Open in IMG/M
3300006028|Ga0070717_10861055All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia825Open in IMG/M
3300006174|Ga0075014_100466854All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia701Open in IMG/M
3300006176|Ga0070765_100149428All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia2082Open in IMG/M
3300006176|Ga0070765_100264199All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia1582Open in IMG/M
3300006578|Ga0074059_12155048All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii590Open in IMG/M
3300006604|Ga0074060_12055434All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales929Open in IMG/M
3300009623|Ga0116133_1106744All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii715Open in IMG/M
3300009623|Ga0116133_1119274All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii679Open in IMG/M
3300009683|Ga0116224_10103804All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii1377Open in IMG/M
3300009698|Ga0116216_10077903All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia2040Open in IMG/M
3300009698|Ga0116216_10141486All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii1479Open in IMG/M
3300009698|Ga0116216_10156815All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii1399Open in IMG/M
3300010329|Ga0134111_10476320All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii545Open in IMG/M
3300010359|Ga0126376_11767324All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii655Open in IMG/M
3300010371|Ga0134125_10904015All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii970Open in IMG/M
3300010373|Ga0134128_10785649All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii1056Open in IMG/M
3300010379|Ga0136449_102626759All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii717Open in IMG/M
3300012189|Ga0137388_10088942All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia2625Open in IMG/M
3300012398|Ga0134051_1310073All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii663Open in IMG/M
3300012491|Ga0157329_1002634All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1038Open in IMG/M
3300012493|Ga0157355_1000724All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia1565Open in IMG/M
3300012497|Ga0157319_1050297All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii515Open in IMG/M
3300012513|Ga0157326_1036728All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii672Open in IMG/M
3300012929|Ga0137404_10397689All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1214Open in IMG/M
3300012948|Ga0126375_10767555All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii759Open in IMG/M
3300013306|Ga0163162_10245345All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1923Open in IMG/M
3300013308|Ga0157375_11773668All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii731Open in IMG/M
3300015374|Ga0132255_102475031All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii793Open in IMG/M
3300017926|Ga0187807_1144247All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii760Open in IMG/M
3300017928|Ga0187806_1314382All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii555Open in IMG/M
3300017930|Ga0187825_10375937All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii542Open in IMG/M
3300017936|Ga0187821_10392297All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii567Open in IMG/M
3300017955|Ga0187817_10875307All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii574Open in IMG/M
3300017961|Ga0187778_10108355All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1731Open in IMG/M
3300017972|Ga0187781_10149936All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1636Open in IMG/M
3300017973|Ga0187780_10409048All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria963Open in IMG/M
3300017974|Ga0187777_10692584All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii723Open in IMG/M
3300018038|Ga0187855_10262557All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1013Open in IMG/M
3300018058|Ga0187766_10599754All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii752Open in IMG/M
3300018060|Ga0187765_10891567All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii601Open in IMG/M
3300018085|Ga0187772_10380682All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria979Open in IMG/M
3300021362|Ga0213882_10196387All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii832Open in IMG/M
3300021405|Ga0210387_10647259All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria938Open in IMG/M
3300021433|Ga0210391_10291754All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1280Open in IMG/M
3300021474|Ga0210390_10203703All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1673Open in IMG/M
3300021477|Ga0210398_11130162All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii621Open in IMG/M
3300022716|Ga0242673_1125118All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii520Open in IMG/M
3300025464|Ga0208076_1030135All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii946Open in IMG/M
3300025918|Ga0207662_10021573All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria3684Open in IMG/M
3300025945|Ga0207679_11217059All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii691Open in IMG/M
3300026374|Ga0257146_1005864All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria2013Open in IMG/M
3300026497|Ga0257164_1027475All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii840Open in IMG/M
3300026523|Ga0209808_1264048All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii550Open in IMG/M
3300027029|Ga0208731_1031521All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii580Open in IMG/M
3300027110|Ga0208488_1070432All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii578Open in IMG/M
3300027465|Ga0207626_103827Not Available565Open in IMG/M
3300027619|Ga0209330_1098487All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii665Open in IMG/M
3300027725|Ga0209178_1111320All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii922Open in IMG/M
3300027862|Ga0209701_10198249All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii1198Open in IMG/M
3300027895|Ga0209624_10168536All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1451Open in IMG/M
3300027898|Ga0209067_10919294All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii515Open in IMG/M
3300027905|Ga0209415_10206901All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1841Open in IMG/M
3300027905|Ga0209415_11131045All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii506Open in IMG/M
3300028755|Ga0307316_10177601All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii764Open in IMG/M
3300028759|Ga0302224_10280064All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii668Open in IMG/M
3300030054|Ga0302182_10135074All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1072Open in IMG/M
3300030509|Ga0302183_10067095All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1418Open in IMG/M
3300030602|Ga0210254_10887965All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii666Open in IMG/M
3300030706|Ga0310039_10221426All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii738Open in IMG/M
3300030706|Ga0310039_10339737All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii562Open in IMG/M
3300030707|Ga0310038_10437064All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii563Open in IMG/M
3300030743|Ga0265461_12306485All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii627Open in IMG/M
3300030862|Ga0265753_1032456All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii851Open in IMG/M
3300031152|Ga0307501_10234271All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii540Open in IMG/M
3300031233|Ga0302307_10651406All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii529Open in IMG/M
3300031234|Ga0302325_11880538All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii745Open in IMG/M
3300031525|Ga0302326_10712465All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1464Open in IMG/M
3300031543|Ga0318516_10080844All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii1814Open in IMG/M
3300031561|Ga0318528_10392536All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii745Open in IMG/M
3300031668|Ga0318542_10676127All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii539Open in IMG/M
3300031679|Ga0318561_10780206All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii525Open in IMG/M
3300031708|Ga0310686_103616163All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii584Open in IMG/M
3300031708|Ga0310686_115035272All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii535Open in IMG/M
3300031719|Ga0306917_10547222All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria910Open in IMG/M
3300031765|Ga0318554_10212880All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1100Open in IMG/M
3300031778|Ga0318498_10001417All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria7862Open in IMG/M
3300031796|Ga0318576_10033859All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria2134Open in IMG/M
3300031797|Ga0318550_10064671All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1672Open in IMG/M
3300031805|Ga0318497_10005758All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Actinomadura5423Open in IMG/M
3300031805|Ga0318497_10094528All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1597Open in IMG/M
3300031821|Ga0318567_10453946All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii727Open in IMG/M
3300031831|Ga0318564_10399670All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii601Open in IMG/M
3300031831|Ga0318564_10503899Not Available525Open in IMG/M
3300031835|Ga0318517_10323941All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii696Open in IMG/M
3300031845|Ga0318511_10509432All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii557Open in IMG/M
3300031859|Ga0318527_10423348All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii568Open in IMG/M
3300031860|Ga0318495_10078213All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii1478Open in IMG/M
3300031890|Ga0306925_12176745All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii517Open in IMG/M
3300031894|Ga0318522_10135975All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria923Open in IMG/M
3300031896|Ga0318551_10160161All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii1232Open in IMG/M
3300031938|Ga0308175_102839555Not Available541Open in IMG/M
3300031945|Ga0310913_10342862All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1057Open in IMG/M
3300031962|Ga0307479_11899584All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii546Open in IMG/M
3300032010|Ga0318569_10441958All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii606Open in IMG/M
3300032039|Ga0318559_10187456All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria949Open in IMG/M
3300032044|Ga0318558_10378980Not Available703Open in IMG/M
3300032055|Ga0318575_10337398All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii763Open in IMG/M
3300032783|Ga0335079_10450042All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii1381Open in IMG/M
3300033289|Ga0310914_10090993All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia2606Open in IMG/M


 ⦗Top⦘

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil27.64%
Peatlands SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil8.13%
Tropical PeatlandEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland5.69%
SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Soil4.88%
PalsaEnvironmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa4.88%
Freshwater SedimentEnvironmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment4.06%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil4.06%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Soil3.25%
Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil3.25%
Vadose Zone SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil2.44%
Arabidopsis RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Rhizosphere2.44%
PeatlandEnvironmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland1.63%
WatershedsEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds1.63%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil1.63%
Terrestrial SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil1.63%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil1.63%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil1.63%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil1.63%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil1.63%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere1.63%
PeatlandEnvironmental → Aquatic → Freshwater → Wetlands → Bog → Peatland0.81%
Bog Forest SoilEnvironmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil0.81%
Unplanted SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Unplanted Soil0.81%
Agricultural SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil0.81%
Arctic Peat SoilEnvironmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil0.81%
Hardwood Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil0.81%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural → Soil0.81%
SoilEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Soil0.81%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil0.81%
Switchgrass RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere0.81%
Agricultural SoilEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil0.81%
Exposed RockEnvironmental → Terrestrial → Rock-Dwelling (Subaerial Biofilms) → Unclassified → Unclassified → Exposed Rock0.81%
Arabidopsis RhizosphereHost-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere0.81%
Switchgrass RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere0.81%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere0.81%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere0.81%
Corn RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere0.81%
Tropical Rainforest SoilEnvironmental → Terrestrial → Soil → Unclassified → Tropical Rainforest → Tropical Rainforest Soil0.81%

Visualization
Powered by ApexCharts



Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
3300004092Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3, ECP14_OM1, ECP14_OM2, ECP14_OM3EnvironmentalOpen in IMG/M
3300004643Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 3EnvironmentalOpen in IMG/M
3300005332Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)EnvironmentalOpen in IMG/M
3300005347Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaGHost-AssociatedOpen in IMG/M
3300005363Tropical rainforest soil microbial communities from the Amazon Forest, Brazil, analyzing deforestation - Metatranscriptome F II A100 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300005435Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaGEnvironmentalOpen in IMG/M
3300005451Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_130EnvironmentalOpen in IMG/M
3300005545Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaGEnvironmentalOpen in IMG/M
3300005559Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_149EnvironmentalOpen in IMG/M
3300005576Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_157EnvironmentalOpen in IMG/M
3300005591Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF1EnvironmentalOpen in IMG/M
3300005610Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3EnvironmentalOpen in IMG/M
3300005921Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6EnvironmentalOpen in IMG/M
3300006028Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaGEnvironmentalOpen in IMG/M
3300006174Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2014EnvironmentalOpen in IMG/M
3300006176Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5EnvironmentalOpen in IMG/M
3300006578Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLMA (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300006604Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLMB (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300009623Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_19_10EnvironmentalOpen in IMG/M
3300009683Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_b_LC metaGEnvironmentalOpen in IMG/M
3300009698Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_3_AS metaGEnvironmentalOpen in IMG/M
3300010329Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_2_11112015EnvironmentalOpen in IMG/M
3300010359Tropical forest soil microbial communities from Panama - MetaG Plot_15EnvironmentalOpen in IMG/M
3300010371Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1EnvironmentalOpen in IMG/M
3300010373Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4EnvironmentalOpen in IMG/M
3300010379Sb_50d combined assemblyEnvironmentalOpen in IMG/M
3300012189Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4A metaGEnvironmentalOpen in IMG/M
3300012398Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_40cm_2_24_2 metaT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300012491Arabidopsis rhizosphere microbial communities from North Carolina - M.Oy.8.old.040610Host-AssociatedOpen in IMG/M
3300012493Unplanted soil (control) microbial communities from North Carolina - M.Soil.10.yng.090610EnvironmentalOpen in IMG/M
3300012497Arabidopsis rhizosphere microbial communities from North Carolina - M.Cvi.2.old.240510Host-AssociatedOpen in IMG/M
3300012513Arabidopsis rhizosphere microbial communities from North Carolina - M.Oy.2.old.250510Host-AssociatedOpen in IMG/M
3300012929Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300012948Tropical forest soil microbial communities from Panama - MetaG Plot_14EnvironmentalOpen in IMG/M
3300013306Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaGHost-AssociatedOpen in IMG/M
3300013308Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaGHost-AssociatedOpen in IMG/M
3300015374Col-0 rhizosphere combined assemblyHost-AssociatedOpen in IMG/M
3300017926Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_2EnvironmentalOpen in IMG/M
3300017928Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_1EnvironmentalOpen in IMG/M
3300017930Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SourceSoil_5EnvironmentalOpen in IMG/M
3300017936Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SourceSoil_1EnvironmentalOpen in IMG/M
3300017955Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_2EnvironmentalOpen in IMG/M
3300017961Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP5_20_MGEnvironmentalOpen in IMG/M
3300017972Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0715_SJ02_MP02_20_MGEnvironmentalOpen in IMG/M
3300017973Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP10_20_MGEnvironmentalOpen in IMG/M
3300017974Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP5_10_MGEnvironmentalOpen in IMG/M
3300018038Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_8_10EnvironmentalOpen in IMG/M
3300018058Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP05_20_MGEnvironmentalOpen in IMG/M
3300018060Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP05_10_MGEnvironmentalOpen in IMG/M
3300018085Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP15_20_MGEnvironmentalOpen in IMG/M
3300021362Barbacenia macrantha exposed rock microbial communities from rupestrian grasslands, the National Park of Serra do Cipo, Brazil - ER_R09EnvironmentalOpen in IMG/M
3300021405Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-OEnvironmentalOpen in IMG/M
3300021433Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-OEnvironmentalOpen in IMG/M
3300021474Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-OEnvironmentalOpen in IMG/M
3300021477Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-OEnvironmentalOpen in IMG/M
3300022716Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-O (Metagenome Metatranscriptome) (v2)EnvironmentalOpen in IMG/M
3300025464Arctic peat soil from Barrow, Alaska - NGEE Surface sample 210-3 shallow-072012 (SPAdes)EnvironmentalOpen in IMG/M
3300025918Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025945Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300026374Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - CO-08-AEnvironmentalOpen in IMG/M
3300026497Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - CO-08-BEnvironmentalOpen in IMG/M
3300026523Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_157 (SPAdes)EnvironmentalOpen in IMG/M
3300027029Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF045 (SPAdes)EnvironmentalOpen in IMG/M
3300027110Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF001 (SPAdes)EnvironmentalOpen in IMG/M
3300027465Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-BECK03-A (SPAdes)EnvironmentalOpen in IMG/M
3300027619Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_O3 (SPAdes)EnvironmentalOpen in IMG/M
3300027725Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS200 (SPAdes)EnvironmentalOpen in IMG/M
3300027862Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300027895Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_O1 (SPAdes)EnvironmentalOpen in IMG/M
3300027898Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2013 (SPAdes)EnvironmentalOpen in IMG/M
3300027905Peat soil microbial communities from Weissenstadt, Germany - SII-SIP-2007 (SPAdes)EnvironmentalOpen in IMG/M
3300028755Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_356EnvironmentalOpen in IMG/M
3300028759Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_E3_1EnvironmentalOpen in IMG/M
3300030054Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_N3_1EnvironmentalOpen in IMG/M
3300030509Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_N3_2EnvironmentalOpen in IMG/M
3300030602Metatranscriptome of forest soil microbial communities from Boreal Montmorency Forest, Quebec, Canada - FO133-ANR018SO (Eukaryote Community Metatranscriptome)EnvironmentalOpen in IMG/M
3300030706Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_6_BS metaG (v2)EnvironmentalOpen in IMG/M
3300030707Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_4_PS metaG (v2)EnvironmentalOpen in IMG/M
3300030743Forest Soil Metatranscriptomes Boreal Montmorency Forest, Quebec, Canada VCO Co-assemblyEnvironmentalOpen in IMG/M
3300030862Metatranscriptome of soil microbial communities from Maridalen valley, Oslo, Norway - NSE5 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300031152Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 15_SEnvironmentalOpen in IMG/M
3300031233Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_E3_2EnvironmentalOpen in IMG/M
3300031234Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_2EnvironmentalOpen in IMG/M
3300031525Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_3EnvironmentalOpen in IMG/M
3300031543Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f20EnvironmentalOpen in IMG/M
3300031561Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f26EnvironmentalOpen in IMG/M
3300031668Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f23EnvironmentalOpen in IMG/M
3300031679Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f23EnvironmentalOpen in IMG/M
3300031708FICUS49499 Metagenome Czech Republic combined assemblyEnvironmentalOpen in IMG/M
3300031719Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2)EnvironmentalOpen in IMG/M
3300031765Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f22EnvironmentalOpen in IMG/M
3300031778Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f24EnvironmentalOpen in IMG/M
3300031796Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f24EnvironmentalOpen in IMG/M
3300031797Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f23EnvironmentalOpen in IMG/M
3300031805Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f23EnvironmentalOpen in IMG/M
3300031821Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f20EnvironmentalOpen in IMG/M
3300031831Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f20EnvironmentalOpen in IMG/M
3300031835Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f21EnvironmentalOpen in IMG/M
3300031845Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f18EnvironmentalOpen in IMG/M
3300031859Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f25EnvironmentalOpen in IMG/M
3300031860Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f25EnvironmentalOpen in IMG/M
3300031890Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)EnvironmentalOpen in IMG/M
3300031894Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f18EnvironmentalOpen in IMG/M
3300031896Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f19EnvironmentalOpen in IMG/M
3300031938Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.C.R1EnvironmentalOpen in IMG/M
3300031945Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX082EnvironmentalOpen in IMG/M
3300031962Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515EnvironmentalOpen in IMG/M
3300032010Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f22EnvironmentalOpen in IMG/M
3300032039Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f21EnvironmentalOpen in IMG/M
3300032044Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f20EnvironmentalOpen in IMG/M
3300032055Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f23EnvironmentalOpen in IMG/M
3300032783Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.3EnvironmentalOpen in IMG/M
3300033289Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN108EnvironmentalOpen in IMG/M

Geographical Distribution
Zoom:     Powered by OpenStreetMap


 ⦗Top⦘

Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
Ga0062389_10225864413300004092Bog Forest SoilMKIALVAQNATPLHPRTGSGPDSDDIGLSELTRKLAAQGHQV
Ga0062591_10195893313300004643SoilMKIALVAQNATPLHPRTGAGPDRDDIGLSELTRQFAGQGHQVTVYTQKN
Ga0066388_10773404723300005332Tropical Forest SoilMKIALVAQNATPLHPRTGSGPDHDDIGLSELTRQFAGQGHQVTVYTQKNLADVPD
Ga0070668_10099125223300005347Switchgrass RhizosphereMKIALVAQNATPLHPRTGSGPDRDDIGLSELTRKLAGQGHQVTVYTQKNLADV
Ga0008090_1586660523300005363Tropical Rainforest SoilMKIALVAQNATPLHPRTGSGPDRDDIGLSELTRQFAGQGHQVTVYTQKNLADVPDQA
Ga0070714_10032200613300005435Agricultural SoilMKIALVAQNATPLNPRAGSGPESDDIGLGELSRKLADHGH
Ga0066681_1089972913300005451SoilMKIALVAQNATPLHPRTGSGPDRDDIGLSELTRQFAGQGHQVTVYTQKNLADVPDQAELH
Ga0070695_10007559613300005545Corn, Switchgrass And Miscanthus RhizosphereMKIALVAQNATPLHPRTGSGPDRDDIGLSELTRQLAGQGHQVTVYTQKN
Ga0066700_1044901033300005559SoilMKIALVAQNATPLHPRTGSGPDRDDIGLSELTRKLA
Ga0066708_1091198313300005576SoilMKIALVAQNATPLHPRAGSGPDRDDIGLSELTRKLAGQGHQVTVYAQ
Ga0070761_1016229133300005591SoilMKIALVAQDATLLHPRTGSGPDSDDIGLSELTRCLAGQGHQVTVYAQK
Ga0070761_1056794323300005591SoilMKIALVAQHATPLRPRTGAGPDSDDIGLSELTREL
Ga0070763_1029668633300005610SoilMKIALVAQNATPLHPRAGSGPDRDDIGLGELTRKLAGQGHQVTVYAQKILPGLPD
Ga0070766_1119315313300005921SoilMKIALVAQNATPLHPRAGSGPDRDDVGLSELTRKLAGQGHQVTVYAQKN
Ga0070717_1086105513300006028Corn, Switchgrass And Miscanthus RhizosphereMKIALVAQNATPLNPRAGSGPESDDIGLGELSRKLADHGHKVTIYAQKQQTD
Ga0075014_10046685423300006174WatershedsMKIAVVAQNATPLHPRAGSSPDRDDIGLSELTRKLAGQGHQVTVYAQKNL
Ga0070765_10014942853300006176SoilMKIALVAQHATPLRPRAGSGPDSDDIGLSELTRELASHGHQVTVYAQK
Ga0070765_10026419943300006176SoilMKIAMVAQHATPLRPRAGSGPDSDDIGLGELTRMLARQGHQVTVYAEK
Ga0074059_1215504813300006578SoilMKIALVAQNATPLHPRTGSGPDRDDIGLSELTRQLAGKGH*
Ga0074060_1205543413300006604SoilMKIALVAQNATPLHSRTGSGPDRDDIGLSELTRKLAGQ
Ga0116133_110674413300009623PeatlandMKIALVAQNATPLHPRSGSGPDRDDNGLSELTRKLA
Ga0116133_111927423300009623PeatlandMKIALVAQNATPLHPRTDSGPDRDDIGLSELTRQLAGQGHHVTVYAEK
Ga0116224_1010380413300009683Peatlands SoilMKIAVVAQNATPLHPRAGSGPDRDDIGLSELTRKLAGQGHQVTVYAQKNLPDQPAQ
Ga0116216_1007790353300009698Peatlands SoilVTEVRSERNLMKIALVAQNATPLHPRAGSGPDRDDIGLTELTRKLAGQGHQVTVYAQK
Ga0116216_1014148613300009698Peatlands SoilMKIALVAQHATPLRPQAGSGPDSDDVGLSELTRQLADHG
Ga0116216_1015681533300009698Peatlands SoilMKIALVAQNATPLHPRAGSGPDSDDIGLSELTRRMADQGHQVTVY
Ga0134111_1047632013300010329Grasslands SoilMKIALVAQNATPLQPRAGSGPDHDDIGLGELTRKLAGQG
Ga0126376_1176732413300010359Tropical Forest SoilMKIALVAQNATPLHPRTGSGPDHDDIGLSELTRQF
Ga0134125_1090401533300010371Terrestrial SoilMKIALVAQNATPLHPRTGSGPDRDDIGLSELTRQLAGQGHQVTVYTQKNLAD
Ga0134128_1078564933300010373Terrestrial SoilMKIALVAQNATPLHPRAGSGPDRDDIGLSELTRKLASQGHQVTVYTQ
Ga0136449_10262675913300010379Peatlands SoilMKIALVAQNAMLLHPRTGSGPDSDDIGLSELTRKLAGQGQQVT
Ga0137388_1008894213300012189Vadose Zone SoilMKIALVAQNATPLHPRTGSGPDHDDVGLNELTRQLAGQGHQVTVYTEKN
Ga0134051_131007323300012398Grasslands SoilMKIALVAQNATPLHPRTGSGPDRDDIGLSELTRKLAGQGHQVTVYA
Ga0157329_100263433300012491Arabidopsis RhizosphereMKIALVAQNATPLHPRAGSGPDRDDIGLGELTRKLAGQGHQVTVY
Ga0157355_100072413300012493Unplanted SoilMKIALVAQNATPLHPRTGSGPDRDDIGLSELTRKLAGQGHQ
Ga0157319_105029713300012497Arabidopsis RhizosphereMKIALVAQNATPLHPRAGSGPDRDDIGLGELTRKLADHGHQ
Ga0157326_103672823300012513Arabidopsis RhizosphereMKIALVAQNATPLHPRAGSGPDRDDIGLSELTRKLADQGHQVTVY
Ga0137404_1039768913300012929Vadose Zone SoilMKIALVAQNATPLHPRAGSGPDRDDIGLGELTRKLAGQGHEVTVYAQKSL
Ga0126375_1076755523300012948Tropical Forest SoilMKIALVAQNATPLHPRTGSGPDHDDIGLSELTRQFAGQGHQVTVYTQKSLADVP
Ga0163162_1024534543300013306Switchgrass RhizosphereMKIALVAQNATPLHPRTGSGPDRDDIGLSELTRQLAGQGHQVTVY
Ga0157375_1177366813300013308Miscanthus RhizosphereMKIALVAQNATPLHPRTGSGPDRDDIGLSELTRQLAGQGHQVTVYTQKNLA
Ga0132255_10247503123300015374Arabidopsis RhizosphereMTRFEAREAPMKIALVAQNATPLHPRTGSGPDRDDIGLSELTRQLAGKGHLVTVYTQKNLADVPDQAELHA
Ga0187807_114424723300017926Freshwater SedimentMKIALVAQHATPLRPRTGSGPDSDDIGLSELTRKL
Ga0187806_131438223300017928Freshwater SedimentMKIALVAQHATPLRPRTGAGPDSDDIGLSELTRELAAHGHQVTVFAQKHQP
Ga0187825_1037593723300017930Freshwater SedimentMKIALVAQHATPLRPQAGSGPDSDDVGLSELTRQLADHGHQ
Ga0187821_1039229723300017936Freshwater SedimentMKIALVAQNATPLHPRTGSGPDRDDIGLSELTRKLAGQGHQVT
Ga0187817_1087530713300017955Freshwater SedimentMKIALVAQHATPLRPRTGAGPDSDDIGLSELTRELATHGHQVTVF
Ga0187778_1010835543300017961Tropical PeatlandMKIALVAQHATPLRPRAGSGPDGDDLGLSELTRKLADNGHQVTIYAQ
Ga0187781_1014993613300017972Tropical PeatlandMKIAVVAQNATPLHPRAGSGPDGDDVGLGELTGKLAGLGHEVTVYAQNDL
Ga0187780_1040904833300017973Tropical PeatlandMKIALVAQNATPLHPRTGAGPDRDDIGLGELTRKLAGQGHQVTVYAQK
Ga0187777_1069258423300017974Tropical PeatlandMKIALVAQNATPLRPRTGSGPDHDDIGLSELTRKLAGQGHRVTV
Ga0187855_1026255733300018038PeatlandMKIALVAQNATPLNPRTGTGPDSDDVGLSELTRRLAGHGHQVTVFAQKNDPSQ
Ga0187766_1059975413300018058Tropical PeatlandMKIALVAQHATPLRPRAGAGPDSDDIGLRELTRMLASHGHQVTIY
Ga0187765_1089156713300018060Tropical PeatlandMKIALVAQHATPLRPRTGAGPDSDDIGLSELTRKLA
Ga0187772_1038068213300018085Tropical PeatlandMKIALVAQHATPLRPRAGSGPDSDDIGLSELTRRLATHGHQVTLYAQK
Ga0213882_1019638713300021362Exposed RockMKIALVAQNATPLHPRAGSGPDRDDIGLSELTRKLASQG
Ga0210387_1064725933300021405SoilMKIALVAQNATPLHPRTGSGPDRDDIGLSELTRKLAGQG
Ga0210391_1029175433300021433SoilMKIALVAQNATPLHPRAGSGPDRDDIGLGELTRKLAGQGHQVT
Ga0210390_1020370343300021474SoilMKIALVAQDATLLHPRTGSGPDSDDIGLSELTRCLAG
Ga0210398_1113016223300021477SoilMKIALVAQHATPLHPRNGSGPDRDDLGLSELTRQLATH
Ga0242673_112511823300022716SoilMKIALVAQNASPLHPRTGSGPDSDDIGLTDLTRKLAGQ
Ga0208076_103013513300025464Arctic Peat SoilMKIALVAQNATPLHPRSGSGPDHDDIGLSELTRRLASQGHQVTVYAQKN
Ga0207662_1002157313300025918Switchgrass RhizosphereMKIALVAQNATPLHPRAGSGPDRDDIGLGELTRKLAGQGHQVTVYAQKNLADVPDQA
Ga0207679_1121705913300025945Corn RhizosphereMKIALVAQNATPLHPRVGSGPDRDDIGLSELTRKLASQGH
Ga0257146_100586443300026374SoilMKIALVAQNATPLHPREGSGPDRDDIGLSELTRKLAGQGHQVTVYAQKNLADVPDQAELH
Ga0257164_102747513300026497SoilMKIALVAQNATPLHPRAGSGPDRDDIGLSELTRKLAGQGHQVTVYAQKNL
Ga0209808_126404823300026523SoilMKIALVAQNATPLHPRAGSGPDRDDIGLSELTRKLAGQGHQVTVY
Ga0208731_103152123300027029Forest SoilMKIALVAQNATPLHPRAGSGPDRDDLGLSELTRELAGQGHQVTVYAQKNLPEV
Ga0208488_107043213300027110Forest SoilMKIALVAQHATPLHPRNGSGPDRDDLGLSELTRKLATHGHQVTVFAQKDQ
Ga0207626_10382713300027465SoilMKIALVAQNATPLHPRTGSGPDRDDIGLSELTRQLA
Ga0209330_109848713300027619Forest SoilMKIALVAQHATPLRPRTGAGPDSDDIGLSELSRKLA
Ga0209178_111132013300027725Agricultural SoilMKIALVAQNATPLHPRTGSGPDRDDIGLSELTRQFAG
Ga0209701_1019824913300027862Vadose Zone SoilMKIALVAQNATPLHPRTGSGPDHDDVGLNELTRELAGQGHEV
Ga0209624_1016853613300027895Forest SoilMKIALVAQHATPLRPRTGAGPDSDDIGLSELSRKLATHGHQ
Ga0209067_1091929423300027898WatershedsMKIALVAQHATPLRPRTGAGPDSDDIGLSELTRKLATHGHQVTV
Ga0209415_1020690133300027905Peatlands SoilMKIALVAQNATPLHPRAGSGPDRDDIGLTELTRKLAGQGHQVTVYAQKNLPDQP
Ga0209415_1113104523300027905Peatlands SoilMKIALVAQHATPLSPRAGTGPSSDDLGLSELTRMLAR
Ga0307316_1017760113300028755SoilMKIALVAQNATPLHPRTGSGPDRDDIGLSELTRQLAGQGHQVTVYTQKNL
Ga0302224_1028006423300028759PalsaMKIALVAQNATPLHPRTGSGPDSDDIGLSELTRKLAGQG
Ga0302182_1013507433300030054PalsaMKIALVAQNATPLHPRTGSGPDSDDIGLSELTRKLAGQGHQVTVYAEKNDP
Ga0302183_1006709533300030509PalsaMKIALVAQNATPLHPRTGSGPDSDDIGLSELTRKLAGQGHQVTVYAE
Ga0210254_1088796513300030602SoilMKIALVAQNATPMHPRTGSGPDSDDIGLTDLTRKLAGQGLRKK
Ga0310039_1022142623300030706Peatlands SoilMKIAVVAQNATPLLPRAGSGLDRDDIGLSELTRKLAGQGHQVIVYAQ
Ga0310039_1033973713300030706Peatlands SoilMKIALVAQNATPLHPHAGSGPDRDDIGLNELTRKLAGQGHQVT
Ga0310038_1043706413300030707Peatlands SoilMKIAVVAQNATPLRPRAGSGPDRDDVGLSELTRKLAGQG
Ga0265461_1230648513300030743SoilMKIAMVAQHATPLRPRAGSGPDSDDIGLGELTRMLARQG
Ga0265753_103245613300030862SoilMKIALVAQNATPLHPRAGSGPDRDDNGLSELTRKLAAQGH
Ga0307501_1023427123300031152SoilMKIALVAQNATPLNPRTGSGPDRDDIGLSELTRKLA
Ga0302307_1065140623300031233PalsaMKIALVAQNATPLRPRTGAGPDSDDVGLSELTRELATHGHQVTV
Ga0302325_1188053823300031234PalsaMKIAMVAQHATPLRPRAGSGPDSDDIGLGELTRMLARQGH
Ga0302326_1071246533300031525PalsaMKIALVAQNATPLHPRTGSGPDSDDIGLTDLTRKLAGQGHQVTV
Ga0318516_1008084413300031543SoilMKIALVAQHATPLRPRAGSGPDSDDIGLSDLTRRLADHG
Ga0318528_1039253623300031561SoilMKIALVAQNATPLHPRAGSGPDHDDIGLSELTRKLAGQGHQ
Ga0318542_1067612713300031668SoilMKIALVAQHATPLRPRAGSGPGSDDIGLSELTRRLAGHGHR
Ga0318561_1078020613300031679SoilMKIALVAQHATPLRPRTGSGPDSDDVGLSELTRKLAAHGHQVTVFAQK
Ga0310686_10361616323300031708SoilMKIALVAQNATPLHPDRDDLGLSELTRKLAGQGHQVTVYAQKNLPDVPDQAELHDG
Ga0310686_11503527223300031708SoilMKIALVAQHATPLRPRTGTGPDSDDIGLSELTRKLATHGHQVT
Ga0306917_1054722213300031719SoilMKIALVAQHATLLRPRTGSGPDRDDIGLSELTRKLAAHG
Ga0318554_1021288033300031765SoilMKIALVAQNATPLHPRAGSGPDRDDIGLNELTRKLAGQGHQVTLYAQKN
Ga0318498_1000141713300031778SoilMKIALVAQNATPLHPRTGSGPDRDDIGLSELTRELAGLGHQVTVYAQNNPADL
Ga0318576_1003385953300031796SoilMKIALVAQNATPLHPRTGSGPDRDDIGLSELTRELAGLGHQVTVYAQNN
Ga0318550_1006467133300031797SoilMKIALVAQHATPLRPRTGAGPDSDDIGLSELTRKLAAHGHQV
Ga0318497_1000575893300031805SoilMKIALVAQNATPLHPRTGSGPDRDDIGLSELTRELAGLGHQVTVYAQ
Ga0318497_1009452843300031805SoilMKIALVAQNATPLHPRAGSGPDRDDIGLNELTRKLAGQGHQVT
Ga0318567_1045394623300031821SoilMKIALVAQNATPLHPRAGSGPDRDDIGLSELTRKLAGQGHQVTVYTQKNL
Ga0318564_1039967013300031831SoilMKIALVAQHATPLRPRAGSGPDTDDIGLGDLTRRLADHGHQVTIY
Ga0318564_1050389913300031831SoilMKIALVAQNATPLHPRAGSGPDRDDIGLSELTRELAGQGHQVTVYAQKN
Ga0318517_1032394113300031835SoilMKIALVAQNATPLHPRTGSGPDRDDIGLSELTRELAGLGHQVTVYAQN
Ga0318511_1050943223300031845SoilMKIALVAQNATPLHPRTGSGPDRDDIGLSELTRELAGLG
Ga0318527_1042334823300031859SoilMKIAVVAQHATPLRPQAGVGPDSDGIGLSELTRGLATHGH
Ga0318495_1007821333300031860SoilMKIALVAQNATPLHPRAGSGPDRDDIGLSELTRKLAGQGHQVTLYAQKN
Ga0306925_1217674513300031890SoilMKIALVAQHATPLRPRTGSGPDSDDIGLSELTRKLAAHGHQVAVFAQK
Ga0318522_1013597533300031894SoilMKIALVAQHATPLRPRAGSGPDSDDIGLSDLTRRLAD
Ga0318551_1016016133300031896SoilMKIALVAQNATPLHPRAGSGPDRDDIGLSELTRKLAGQGHQVTVYTQKN
Ga0308175_10283955513300031938SoilMKIALVAQNATPLHPRTGSGPDRDDIGLSELTRQLAGHGHQVTVYTQMYLA
Ga0310913_1034286233300031945SoilMKIALVAQNATPLHPRAGSGPDRDDIGLSELTRKLAGQGHQVTLYAQKNLAGLPDQAELHAG
Ga0307479_1189958423300031962Hardwood Forest SoilMKIALVAQHARPLSPRAGTGPDSDDLGLSELTRMLARHGHDVT
Ga0318569_1044195813300032010SoilMKIALVAQNATPLHPRAGSGPDRDDIGLSELTRKLAGQGHQVTLYAQKNVAD
Ga0318559_1018745633300032039SoilMKIALVAQHATPLRPRAGSGPGSDDIGLSELTRRLAGHGHRVTVY
Ga0318558_1037898023300032044SoilMKIALVAQNATPLHPRAGSGPDRDDIGLSELTRKLAAQGHQVTVYA
Ga0318575_1033739813300032055SoilMKIALVAQNATPLHPRAGSGPDRDDIGLSELTRKLAGQGHQVTLS
Ga0335079_1045004233300032783SoilMKIALVAQNATPLHPRAGSGPDRDDIGLSELTRKLAGQ
Ga0310914_1009099313300033289SoilMKIALVAQHATPLRPRAGGGPDSDDIGLSELTRGLAKHGHQVTVYAE

 ⦗Top⦘


Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.