Metagenome / Metatranscriptome Family F070408

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F070408
Family Type	Metagenome / Metatranscriptome
Number of Sequences	123
Average Sequence Length	59 residues
Representative Sequence	MRRVLDVGLILGFLAVDFLFFHDIFKAGEVTTLPQYMTGFLSILVFAICSQSLLKSERY
Number of Associated Samples	104
Number of Associated Scaffolds	123

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	20.33 %
% of genes near scaffold ends (potentially truncated)	28.46 %
% of genes from short scaffolds (< 2000 bps)	86.18 %
Associated GOLD sequencing projects	96
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.61

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (83.740 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (17.073 % of family members)
Environment Ontology (ENVO)	Unclassified (15.447 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (52.846 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 52.87% β-sheet: 0.00% Coil/Unstructured: 47.13%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.61
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.61
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 123 Family Scaffolds
PF01569	PAP2	3.25
PF13207	AAA_17	3.25
PF13238	AAA_18	3.25
PF00583	Acetyltransf_1	2.44
PF00903	Glyoxalase	2.44
PF03640	Lipoprotein_15	2.44
PF04203	Sortase	2.44
PF08241	Methyltransf_11	2.44
PF07883	Cupin_2	2.44
PF00248	Aldo_ket_red	1.63
PF01243	Putative_PNPOx	1.63
PF08818	DUF1801	1.63
PF00106	adh_short	0.81
PF02635	DrsE	0.81
PF03795	YCII	0.81
PF02909	TetR_C_1	0.81
PF14464	Prok-JAB	0.81
PF07228	SpoIIE	0.81
PF00440	TetR_N	0.81
PF04024	PspC	0.81
PF13545	HTH_Crp_2	0.81
PF13302	Acetyltransf_3	0.81
PF05050	Methyltransf_21	0.81
PF00392	GntR	0.81
PF09335	SNARE_assoc	0.81
PF13521	AAA_28	0.81
PF03176	MMPL	0.81
PF04932	Wzy_C	0.81
PF00672	HAMP	0.81
PF01638	HxlR	0.81
PF07676	PD40	0.81
PF06689	zf-C4_ClpX	0.81
PF13683	rve_3	0.81
PF00999	Na_H_Exchanger	0.81
PF01709	Transcrip_reg	0.81
PF00753	Lactamase_B	0.81
PF02773	S-AdoMet_synt_C	0.81
PF14310	Fn3-like	0.81
PF10604	Polyketide_cyc2	0.81
PF04185	Phosphoesterase	0.81
PF09954	DUF2188	0.81
PF00565	SNase	0.81
PF10041	DUF2277	0.81

COG ID	Name	Functional Category	% Frequency in 123 Family Scaffolds
COG3764	Sortase (surface protein transpeptidase)	Cell wall/membrane/envelope biogenesis [M]	2.44
COG4315	Predicted lipoprotein with conserved Yx(FWY)xxD motif (function unknown)	Function unknown [S]	2.44
COG4430	Uncharacterized conserved protein YdeI, YjbR/CyaY-like superfamily, DUF1801 family	Function unknown [S]	1.63
COG5646	Iron-binding protein Fra/YdhG, frataxin family (Fe-S cluster biosynthesis)	Posttranslational modification, protein turnover, chaperones [O]	1.63
COG5649	Uncharacterized conserved protein, DUF1801 domain	Function unknown [S]	1.63
COG0025	NhaP-type Na+/H+ or K+/H+ antiporter	Inorganic ion transport and metabolism [P]	0.81
COG0192	S-adenosylmethionine synthetase	Coenzyme transport and metabolism [H]	0.81
COG0217	Transcriptional and/or translational regulatory protein YebC/TACO1	Translation, ribosomal structure and biogenesis [J]	0.81
COG0398	Uncharacterized membrane protein YdjX, related to fungal oxalate transporter, TVP38/TMEM64 family	Function unknown [S]	0.81
COG0475	Kef-type K+ transport system, membrane component KefB	Inorganic ion transport and metabolism [P]	0.81
COG0586	Membrane integrity protein DedA, putative transporter, DedA/Tvp38 family	Cell wall/membrane/envelope biogenesis [M]	0.81
COG1033	Predicted exporter protein, RND superfamily	General function prediction only [R]	0.81
COG1238	Uncharacterized membrane protein YqaA, VTT domain	Function unknown [S]	0.81
COG1309	DNA-binding protein, AcrR family, includes nucleoid occlusion protein SlmA	Transcription [K]	0.81
COG1733	DNA-binding transcriptional regulator, HxlR family	Transcription [K]	0.81
COG2350	YciI superfamily enzyme, includes 5-CHQ dehydrochlorinase, contains active-site pHis	Secondary metabolites biosynthesis, transport and catabolism [Q]	0.81
COG2409	Predicted lipid transporter YdfJ, MMPL/SSD domain, RND superfamily	General function prediction only [R]	0.81
COG3004	Na+/H+ antiporter NhaA	Energy production and conversion [C]	0.81
COG3263	NhaP-type Na+/H+ and K+/H+ antiporter with C-terminal TrkAC and CorC domains	Energy production and conversion [C]	0.81
COG3307	O-antigen ligase	Cell wall/membrane/envelope biogenesis [M]	0.81
COG3511	Phospholipase C	Cell wall/membrane/envelope biogenesis [M]	0.81
COG4651	Predicted Kef-type K+ transport protein, K+/H+ antiporter domain	Inorganic ion transport and metabolism [P]	0.81

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	84.55 %
Unclassified	root	N/A	15.45 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	83.74 %
Unclassified	root	N/A	15.45 %
Viruses	superkingdom	All Organisms → Viruses	0.81 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	83.74 %
Unclassified	root	N/A	15.45 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.81 %

Name	Rank	Taxonomy	Distribution
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	54.47 %
Unclassified	root	N/A	15.45 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.63 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.81 %

Name	Rank	Taxonomy	Distribution
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	48.78 %
Unclassified	root	N/A	15.45 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	1.63 %
Firmicutes	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	0.81 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.81 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.81 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.81 %

Name	Rank	Taxonomy	Distribution
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	39.84 %
Unclassified	root	N/A	15.45 %
Rubrobacteria	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria	2.44 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.81 %
Bacilli	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli	0.81 %
unclassified Chloroflexi	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi	0.81 %
Thermomicrobia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Thermomicrobia	0.81 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.81 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.81 %

Name	Rank	Taxonomy	Distribution
Micrococcales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales	27.64 %
Unclassified	root	N/A	15.45 %
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	7.32 %
Gaiellales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Gaiellales	2.44 %
Bacillales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales	0.81 %
Propionibacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales	0.81 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.81 %
Sphaerobacteridae	subclass	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Thermomicrobia → Sphaerobacteridae	0.81 %
Rhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae	0.81 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.81 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.81 %

Name	Rank	Taxonomy	Distribution
Micrococcaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Micrococcaceae	27.64 %
Unclassified	root	N/A	15.45 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	7.32 %
Gaiellaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Gaiellales → Gaiellaceae	2.44 %
Sphaerobacterales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Thermomicrobia → Sphaerobacteridae → Sphaerobacterales	0.81 %
Actinopolymorphaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Actinopolymorphaceae	0.81 %
Bacillaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Bacillaceae	0.81 %
Rhizobium/Agrobacterium group	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group	0.81 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.81 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.81 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.81 %

Name	Rank	Taxonomy	Distribution
Arthrobacter	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Micrococcaceae → Arthrobacter	27.64 %
Unclassified	root	N/A	15.45 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	7.32 %
Gaiella	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Gaiellales → Gaiellaceae → Gaiella	2.44 %
Rhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Rhizobium	0.81 %
Sphaerobacterineae	suborder	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Thermomicrobia → Sphaerobacteridae → Sphaerobacterales → Sphaerobacterineae	0.81 %
Actinopolymorpha	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Actinopolymorphaceae → Actinopolymorpha	0.81 %
Halobacillus	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Bacillaceae → Halobacillus	0.81 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.81 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.81 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.81 %

Name	Rank	Taxonomy	Distribution
Arthrobacter silvisoli	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Micrococcaceae → Arthrobacter → Arthrobacter silvisoli	27.64 %
Unclassified	root	N/A	15.45 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	7.32 %
unclassified Gaiella	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Gaiellales → Gaiellaceae → Gaiella → unclassified Gaiella	2.44 %
unclassified Halobacillus	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Bacillaceae → Halobacillus → unclassified Halobacillus	0.81 %
Sphaerobacteraceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Thermomicrobia → Sphaerobacteridae → Sphaerobacterales → Sphaerobacterineae → Sphaerobacteraceae	0.81 %
Rhizobium sullae	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Rhizobium → Rhizobium sullae	0.81 %
Actinopolymorpha	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Actinopolymorphaceae → Actinopolymorpha	0.81 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.81 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.81 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.81 %

Name	Rank	Taxonomy	Distribution
Arthrobacter silvisoli	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Micrococcaceae → Arthrobacter → Arthrobacter silvisoli	27.64 %
Unclassified	root	N/A	15.45 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	7.32 %
Gaiella sp. SCGC AG-212-M14	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Gaiellales → Gaiellaceae → Gaiella → unclassified Gaiella → Gaiella sp. SCGC AG-212-M14	2.44 %
Nitrolancea	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Thermomicrobia → Sphaerobacteridae → Sphaerobacterales → Sphaerobacterineae → Sphaerobacteraceae → Nitrolancea	0.81 %
Halobacillus sp. A5	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Bacillaceae → Halobacillus → unclassified Halobacillus → Halobacillus sp. A5	0.81 %
Rhizobium sullae	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Rhizobium → Rhizobium sullae	0.81 %
Actinopolymorpha	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Actinopolymorphaceae → Actinopolymorpha	0.81 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.81 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.81 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.81 %

Name	Rank	Taxonomy	Distribution
Arthrobacter silvisoli	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Micrococcaceae → Arthrobacter → Arthrobacter silvisoli	27.64 %
Unclassified	root	N/A	15.45 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	7.32 %
Gaiella sp. SCGC AG-212-M14	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Gaiellales → Gaiellaceae → Gaiella → unclassified Gaiella → Gaiella sp. SCGC AG-212-M14	2.44 %
Nitrolancea hollandica	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Thermomicrobia → Sphaerobacteridae → Sphaerobacterales → Sphaerobacterineae → Sphaerobacteraceae → Nitrolancea → Nitrolancea hollandica	0.81 %
Halobacillus sp. A5	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Bacillaceae → Halobacillus → unclassified Halobacillus → Halobacillus sp. A5	0.81 %
Rhizobium sullae	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Rhizobium → Rhizobium sullae	0.81 %
Actinopolymorpha	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Actinopolymorphaceae → Actinopolymorpha	0.81 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.81 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.81 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.81 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2070309004\|prs_FHA1B5K04X56KO	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Micrococcaceae → Arthrobacter → Arthrobacter silvisoli	512	Open in IMG/M
2170459003\|FZ032L002HLDOY	All Organisms → cellular organisms → Bacteria	524	Open in IMG/M
2170459010\|GIO7OMY01CC82B	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Micrococcaceae → Arthrobacter → Arthrobacter silvisoli	505	Open in IMG/M
2170459013\|GO6OHWN02JPAQY	Not Available	505	Open in IMG/M
3300001538\|A10PFW1_11888943	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Micrococcaceae → Arthrobacter → Arthrobacter silvisoli	648	Open in IMG/M
3300002568\|C688J35102_119411485	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Micrococcaceae → Arthrobacter → Arthrobacter silvisoli	690	Open in IMG/M
3300002568\|C688J35102_120852357	All Organisms → cellular organisms → Bacteria	1825	Open in IMG/M
3300004156\|Ga0062589_100882805	All Organisms → cellular organisms → Bacteria	821	Open in IMG/M
3300004156\|Ga0062589_101918260	Not Available	598	Open in IMG/M
3300004479\|Ga0062595_101784346	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Micrococcaceae → Arthrobacter → Arthrobacter silvisoli	584	Open in IMG/M
3300004643\|Ga0062591_101478162	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	678	Open in IMG/M
3300005260\|Ga0074072_1051488	All Organisms → cellular organisms → Bacteria	1209	Open in IMG/M
3300005336\|Ga0070680_101354084	Not Available	616	Open in IMG/M
3300005344\|Ga0070661_101369394	Not Available	595	Open in IMG/M
3300005355\|Ga0070671_100834760	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Micrococcaceae → Arthrobacter → Arthrobacter silvisoli	803	Open in IMG/M
3300005367\|Ga0070667_100401911	All Organisms → Viruses → Predicted Viral	1247	Open in IMG/M
3300005434\|Ga0070709_10155512	All Organisms → cellular organisms → Bacteria	1585	Open in IMG/M
3300005436\|Ga0070713_100798250	All Organisms → cellular organisms → Bacteria	905	Open in IMG/M
3300005437\|Ga0070710_10204468	All Organisms → cellular organisms → Bacteria	1248	Open in IMG/M
3300005445\|Ga0070708_101017962	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	777	Open in IMG/M
3300005451\|Ga0066681_10863260	All Organisms → cellular organisms → Bacteria	544	Open in IMG/M
3300005468\|Ga0070707_101598295	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	619	Open in IMG/M
3300005526\|Ga0073909_10518857	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	579	Open in IMG/M
3300005529\|Ga0070741_10017903	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	11565	Open in IMG/M
3300005529\|Ga0070741_10226081	All Organisms → cellular organisms → Bacteria	1801	Open in IMG/M
3300005532\|Ga0070739_10468593	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	573	Open in IMG/M
3300005534\|Ga0070735_10117194	All Organisms → cellular organisms → Bacteria	1667	Open in IMG/M
3300005536\|Ga0070697_100163104	All Organisms → cellular organisms → Bacteria	1883	Open in IMG/M
3300005538\|Ga0070731_10029366	All Organisms → cellular organisms → Bacteria	3731	Open in IMG/M
3300005538\|Ga0070731_10613941	Not Available	723	Open in IMG/M
3300005568\|Ga0066703_10733300	Not Available	567	Open in IMG/M
3300005587\|Ga0066654_10535415	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Micrococcaceae → Arthrobacter → Arthrobacter silvisoli	644	Open in IMG/M
3300005764\|Ga0066903_100259076	All Organisms → cellular organisms → Bacteria	2696	Open in IMG/M
3300005764\|Ga0066903_100263910	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2676	Open in IMG/M
3300005764\|Ga0066903_100367503	Not Available	2340	Open in IMG/M
3300005764\|Ga0066903_101150354	All Organisms → cellular organisms → Bacteria	1436	Open in IMG/M
3300005764\|Ga0066903_103162275	All Organisms → cellular organisms → Bacteria	891	Open in IMG/M
3300005891\|Ga0075283_1100539	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Micrococcaceae → Arthrobacter → Arthrobacter silvisoli	541	Open in IMG/M
3300006028\|Ga0070717_10020286	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	5223	Open in IMG/M
3300006041\|Ga0075023_100339358	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Micrococcaceae → Arthrobacter → Arthrobacter silvisoli	632	Open in IMG/M
3300006059\|Ga0075017_100012632	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	5389	Open in IMG/M
3300006175\|Ga0070712_100287477	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1326	Open in IMG/M
3300006175\|Ga0070712_100380738	All Organisms → cellular organisms → Bacteria	1161	Open in IMG/M
3300006175\|Ga0070712_101155886	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Micrococcaceae → Arthrobacter → Arthrobacter silvisoli	673	Open in IMG/M
3300006579\|Ga0074054_12130644	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Micrococcaceae → Arthrobacter → Arthrobacter silvisoli	787	Open in IMG/M
3300006755\|Ga0079222_10504614	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Micrococcaceae → Arthrobacter → Arthrobacter silvisoli	887	Open in IMG/M
3300009177\|Ga0105248_11097783	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	899	Open in IMG/M
3300010147\|Ga0126319_1584091	Not Available	527	Open in IMG/M
3300010154\|Ga0127503_10205843	Not Available	1151	Open in IMG/M
3300010358\|Ga0126370_12002954	Not Available	566	Open in IMG/M
3300010376\|Ga0126381_100220885	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2547	Open in IMG/M
3300010376\|Ga0126381_103051336	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Micrococcaceae → Arthrobacter → Arthrobacter silvisoli	664	Open in IMG/M
3300012014\|Ga0120159_1214450	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Actinopolymorphaceae → Actinopolymorpha	508	Open in IMG/M
3300012212\|Ga0150985_102251320	All Organisms → cellular organisms → Bacteria	571	Open in IMG/M
3300012469\|Ga0150984_100049015	All Organisms → cellular organisms → Bacteria	533	Open in IMG/M
3300012951\|Ga0164300_10258605	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	888	Open in IMG/M
3300012955\|Ga0164298_10385616	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	900	Open in IMG/M
3300012957\|Ga0164303_10663981	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Micrococcaceae → Arthrobacter → Arthrobacter silvisoli	697	Open in IMG/M
3300012958\|Ga0164299_10357379	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Micrococcaceae → Arthrobacter → Arthrobacter silvisoli	922	Open in IMG/M
3300012958\|Ga0164299_10961423	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Micrococcaceae → Arthrobacter → Arthrobacter silvisoli	626	Open in IMG/M
3300012960\|Ga0164301_10183727	All Organisms → cellular organisms → Bacteria	1316	Open in IMG/M
3300012960\|Ga0164301_10340972	All Organisms → cellular organisms → Bacteria	1026	Open in IMG/M
3300012961\|Ga0164302_10017915	All Organisms → cellular organisms → Bacteria	2993	Open in IMG/M
3300012961\|Ga0164302_11089557	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Micrococcaceae → Arthrobacter → Arthrobacter silvisoli	630	Open in IMG/M
3300012984\|Ga0164309_10752545	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Micrococcaceae → Arthrobacter → Arthrobacter silvisoli	779	Open in IMG/M
3300012984\|Ga0164309_11517753	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Micrococcaceae → Arthrobacter → Arthrobacter silvisoli	573	Open in IMG/M
3300012984\|Ga0164309_11882033	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Micrococcaceae → Arthrobacter → Arthrobacter silvisoli	513	Open in IMG/M
3300012985\|Ga0164308_10875787	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Micrococcaceae → Arthrobacter → Arthrobacter silvisoli	789	Open in IMG/M
3300012987\|Ga0164307_10842583	Not Available	732	Open in IMG/M
3300012988\|Ga0164306_10815106	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Micrococcaceae → Arthrobacter → Arthrobacter silvisoli	753	Open in IMG/M
3300013307\|Ga0157372_13122945	Not Available	529	Open in IMG/M
3300014166\|Ga0134079_10248354	All Organisms → cellular organisms → Bacteria	768	Open in IMG/M
3300014325\|Ga0163163_11580519	Not Available	717	Open in IMG/M
3300014838\|Ga0182030_10000056	All Organisms → cellular organisms → Bacteria	155743	Open in IMG/M
3300014969\|Ga0157376_11643280	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Micrococcaceae → Arthrobacter → Arthrobacter silvisoli	677	Open in IMG/M
3300015371\|Ga0132258_10554963	Not Available	2879	Open in IMG/M
3300015371\|Ga0132258_13438607	All Organisms → cellular organisms → Bacteria	1086	Open in IMG/M
3300016270\|Ga0182036_10209402	Not Available	1435	Open in IMG/M
3300017937\|Ga0187809_10123159	Not Available	882	Open in IMG/M
3300017937\|Ga0187809_10439899	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Micrococcaceae → Arthrobacter → Arthrobacter silvisoli	503	Open in IMG/M
3300017947\|Ga0187785_10029176	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1992	Open in IMG/M
3300017955\|Ga0187817_10583242	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Micrococcaceae → Arthrobacter → Arthrobacter silvisoli	713	Open in IMG/M
3300018433\|Ga0066667_10644774	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	885	Open in IMG/M
3300018468\|Ga0066662_10147434	All Organisms → cellular organisms → Bacteria	1773	Open in IMG/M
3300019875\|Ga0193701_1019852	All Organisms → cellular organisms → Bacteria	1369	Open in IMG/M
3300019887\|Ga0193729_1043876	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1839	Open in IMG/M
3300022467\|Ga0224712_10093754	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Micrococcaceae → Arthrobacter → Arthrobacter silvisoli	1262	Open in IMG/M
3300022756\|Ga0222622_10007709	All Organisms → cellular organisms → Bacteria	4974	Open in IMG/M
3300024286\|Ga0247687_1004835	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1688	Open in IMG/M
3300025625\|Ga0208219_1005700	All Organisms → cellular organisms → Bacteria → Terrabacteria group	4258	Open in IMG/M
3300025898\|Ga0207692_10124541	All Organisms → cellular organisms → Bacteria	1447	Open in IMG/M
3300025905\|Ga0207685_10016068	All Organisms → cellular organisms → Bacteria	2386	Open in IMG/M
3300025906\|Ga0207699_10079894	All Organisms → cellular organisms → Bacteria	2025	Open in IMG/M
3300025915\|Ga0207693_11133056	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	593	Open in IMG/M
3300025922\|Ga0207646_10982926	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	746	Open in IMG/M
3300025931\|Ga0207644_10756107	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Micrococcaceae → Arthrobacter → Arthrobacter silvisoli	812	Open in IMG/M
3300025986\|Ga0207658_10136068	All Organisms → cellular organisms → Bacteria	1981	Open in IMG/M
3300026475\|Ga0257147_1065954	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Micrococcaceae → Arthrobacter → Arthrobacter silvisoli	551	Open in IMG/M
3300027869\|Ga0209579_10766698	Not Available	521	Open in IMG/M
3300027986\|Ga0209168_10261676	All Organisms → cellular organisms → Bacteria → Terrabacteria group	855	Open in IMG/M
3300028754\|Ga0307297_10128452	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Micrococcaceae → Arthrobacter → Arthrobacter silvisoli	853	Open in IMG/M
3300028800\|Ga0265338_10009805	All Organisms → cellular organisms → Bacteria	11355	Open in IMG/M
3300028876\|Ga0307286_10082324	Not Available	1118	Open in IMG/M
3300031057\|Ga0170834_106807193	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Micrococcaceae → Arthrobacter → Arthrobacter silvisoli	744	Open in IMG/M
3300031421\|Ga0308194_10171609	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Rhizobium → Rhizobium sullae	683	Open in IMG/M
3300031543\|Ga0318516_10334525	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Gaiellales → Gaiellaceae → Gaiella → unclassified Gaiella → Gaiella sp. SCGC AG-212-M14	874	Open in IMG/M
3300031543\|Ga0318516_10377464	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Micrococcaceae → Arthrobacter → Arthrobacter silvisoli	817	Open in IMG/M
3300031564\|Ga0318573_10691211	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Gaiellales → Gaiellaceae → Gaiella → unclassified Gaiella → Gaiella sp. SCGC AG-212-M14	548	Open in IMG/M
3300031715\|Ga0307476_10087501	All Organisms → cellular organisms → Bacteria	2183	Open in IMG/M
3300031716\|Ga0310813_12292204	Not Available	512	Open in IMG/M
3300031777\|Ga0318543_10346391	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	665	Open in IMG/M
3300031778\|Ga0318498_10250929	All Organisms → cellular organisms → Bacteria → Terrabacteria group	798	Open in IMG/M
3300031779\|Ga0318566_10639934	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Micrococcaceae → Arthrobacter → Arthrobacter silvisoli	517	Open in IMG/M
3300031795\|Ga0318557_10309298	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Micrococcaceae → Arthrobacter → Arthrobacter silvisoli	725	Open in IMG/M
3300031880\|Ga0318544_10406615	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Gaiellales → Gaiellaceae → Gaiella → unclassified Gaiella → Gaiella sp. SCGC AG-212-M14	529	Open in IMG/M
3300031890\|Ga0306925_12089954	All Organisms → cellular organisms → Bacteria → Terrabacteria group	531	Open in IMG/M
3300031938\|Ga0308175_100661513	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Micrococcaceae → Arthrobacter → Arthrobacter silvisoli	1130	Open in IMG/M
3300031996\|Ga0308176_11673419	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Bacillaceae → Halobacillus → unclassified Halobacillus → Halobacillus sp. A5	679	Open in IMG/M
3300032059\|Ga0318533_10294474	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1177	Open in IMG/M
3300032090\|Ga0318518_10110257	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1380	Open in IMG/M
3300032261\|Ga0306920_103537349	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	577	Open in IMG/M
3300033803\|Ga0314862_0162813	All Organisms → cellular organisms → Bacteria	545	Open in IMG/M
3300033805\|Ga0314864_0079466	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Thermomicrobia → Sphaerobacteridae → Sphaerobacterales → Sphaerobacterineae → Sphaerobacteraceae → Nitrolancea → Nitrolancea hollandica	781	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	88.62%
Host-Associated	Host-Associated	11.38%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	82.11%
Plants	Host-Associated → Plants	11.38%
Aquatic	Environmental → Aquatic	6.50%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	82.11%
Rhizosphere	Host-Associated → Plants → Rhizosphere	8.13%
Freshwater	Environmental → Aquatic → Freshwater	4.06%
Sediment	Environmental → Aquatic → Sediment	2.44%
Rhizoplane	Host-Associated → Plants → Rhizoplane	2.44%
Roots	Host-Associated → Plants → Roots	0.81%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	59.35%
Loam	Environmental → Terrestrial → Soil → Loam	18.70%
Soil	Host-Associated → Plants → Rhizosphere → Soil	5.69%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	4.06%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	2.44%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	2.44%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	2.44%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	2.44%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	1.63%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.81%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	29.27%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	13.82%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	13.01%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	6.50%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	5.69%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	4.06%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	4.06%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	3.25%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	2.44%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	2.44%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	2.44%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	2.44%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	2.44%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	2.44%
Unclassified	Environmental → Aquatic → Freshwater → Groundwater → Unclassified	1.63%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	1.63%
Tropical Rainforest	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest	0.81%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	0.81%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	0.81%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	17.07%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	12.20%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	9.76%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	7.32%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	4.06%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	3.25%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	3.25%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	2.44%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	2.44%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	2.44%
Grass Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grass Soil	2.44%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	2.44%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	2.44%
Soil	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil	1.63%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	1.63%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost	1.63%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	1.63%
Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Peatland	1.63%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	1.63%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	1.63%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.81%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.81%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	0.81%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	0.81%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.81%
Arctic Peat Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil	0.81%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.81%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.81%
Green-Waste Compost	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest → Green-Waste Compost	0.81%
Rice Paddy Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Rice Paddy Soil	0.81%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	0.81%
Bog	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Bog	0.81%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	0.81%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	0.81%
Switchgrass Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Switchgrass Rhizosphere	0.81%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.81%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.81%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.81%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere	0.81%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	0.81%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere	0.81%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2070309004	Green-waste compost microbial communities at University of California, Davis, USA, from solid state bioreactor - Luquillo Rain Forest, Puerto Rico	Environmental	Open in IMG/M
2170459003	Grass soil microbial communities from Rothamsted Park, UK - March 2009 indirect MP BIO 1O1 lysis 0-21cm	Environmental	Open in IMG/M
2170459010	Grass soil microbial communities from Rothamsted Park, UK - December 2009 direct MP BIO1O1 lysis 0-9cm (no DNA from 10 to 21cm!!!)	Environmental	Open in IMG/M
2170459013	Grass soil microbial communities from Rothamsted Park, UK - July 2010 direct MP BIO 1O1 lysis soil at the rocks surface 0-21cm	Environmental	Open in IMG/M
3300001538	Permafrost active layer microbial communities from McGill Arctic Research Station, Canada - (A10-PF 4A)- 1 week illumina	Environmental	Open in IMG/M
3300002568	Grasslands soil microbial communities from Hopland, California, USA - 2	Environmental	Open in IMG/M
3300004156	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 1	Environmental	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300004643	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 3	Environmental	Open in IMG/M
3300005260	Microbial communities on the surface of kaolinite enhanced biochar from soil with fertiliser in Sydney, Australia	Environmental	Open in IMG/M
3300005336	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG	Environmental	Open in IMG/M
3300005344	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG	Host-Associated	Open in IMG/M
3300005355	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG	Host-Associated	Open in IMG/M
3300005367	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG	Host-Associated	Open in IMG/M
3300005434	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG	Environmental	Open in IMG/M
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental	Open in IMG/M
3300005437	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG	Environmental	Open in IMG/M
3300005445	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG	Environmental	Open in IMG/M
3300005451	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_130	Environmental	Open in IMG/M
3300005468	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG	Environmental	Open in IMG/M
3300005526	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire. - Coalmine Soil_Cen17_06102014_R1	Environmental	Open in IMG/M
3300005529	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen16_06102014_R1	Environmental	Open in IMG/M
3300005532	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen14_06102014_R1	Environmental	Open in IMG/M
3300005534	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen07_05102014_R1	Environmental	Open in IMG/M
3300005536	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG	Environmental	Open in IMG/M
3300005538	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen03_05102014_R1	Environmental	Open in IMG/M
3300005568	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_152	Environmental	Open in IMG/M
3300005587	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_103	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005891	Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_10C_80N_304	Environmental	Open in IMG/M
3300006028	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG	Environmental	Open in IMG/M
3300006041	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2014	Environmental	Open in IMG/M
3300006059	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2012	Environmental	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300006579	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLAB (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006755	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter	Environmental	Open in IMG/M
3300009177	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG	Host-Associated	Open in IMG/M
3300010147	Soil microbial communities from California, USA to study soil gas exchange rates - BB-CA-RED metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010154	Soil microbial communities from Willow Creek, Wisconsin, USA - WC-WI-TBF metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300012014	Permafrost microbial communities from Nunavut, Canada - A10_80cm_6M	Environmental	Open in IMG/M
3300012212	Combined assembly of Hopland grassland soil	Host-Associated	Open in IMG/M
3300012469	Combined assembly of Soil carbon rhizosphere	Host-Associated	Open in IMG/M
3300012951	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_226_MG	Environmental	Open in IMG/M
3300012955	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_216_MG	Environmental	Open in IMG/M
3300012957	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_207_MG	Environmental	Open in IMG/M
3300012958	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_221_MG	Environmental	Open in IMG/M
3300012960	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MG	Environmental	Open in IMG/M
3300012961	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_202_MG	Environmental	Open in IMG/M
3300012984	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_247_MG	Environmental	Open in IMG/M
3300012985	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_246_MG	Environmental	Open in IMG/M
3300012987	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_243_MG	Environmental	Open in IMG/M
3300012988	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_242_MG	Environmental	Open in IMG/M
3300013307	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG	Host-Associated	Open in IMG/M
3300014166	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_2_09182015	Environmental	Open in IMG/M
3300014325	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG	Host-Associated	Open in IMG/M
3300014838	Permafrost microbial communities from Stordalen Mire, Sweden - 812S3M metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300014969	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG	Host-Associated	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300016270	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080	Environmental	Open in IMG/M
3300017937	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_4	Environmental	Open in IMG/M
3300017947	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0815_BV2_4_20_MG	Environmental	Open in IMG/M
3300017955	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_2	Environmental	Open in IMG/M
3300018433	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116	Environmental	Open in IMG/M
3300018468	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111	Environmental	Open in IMG/M
3300019875	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U3s2	Environmental	Open in IMG/M
3300019887	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1c2	Environmental	Open in IMG/M
3300022467	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5pm-2 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022756	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5_b1	Environmental	Open in IMG/M
3300024286	Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK28	Environmental	Open in IMG/M
3300025625	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 53-2 shallow-072012 (SPAdes)	Environmental	Open in IMG/M
3300025898	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025905	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025906	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025915	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025922	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025931	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025986	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026475	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - CO-12-A	Environmental	Open in IMG/M
3300027869	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen03_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027986	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen07_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300028754	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_157	Environmental	Open in IMG/M
3300028800	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG	Host-Associated	Open in IMG/M
3300028876	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_140	Environmental	Open in IMG/M
3300031057	Oak Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031421	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_195 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031543	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f20	Environmental	Open in IMG/M
3300031564	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f21	Environmental	Open in IMG/M
3300031715	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_05	Environmental	Open in IMG/M
3300031716	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YN3	Environmental	Open in IMG/M
3300031777	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f24	Environmental	Open in IMG/M
3300031778	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f24	Environmental	Open in IMG/M
3300031779	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f22	Environmental	Open in IMG/M
3300031795	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f19	Environmental	Open in IMG/M
3300031880	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f25	Environmental	Open in IMG/M
3300031890	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)	Environmental	Open in IMG/M
3300031938	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.C.R1	Environmental	Open in IMG/M
3300031996	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.C.R2	Environmental	Open in IMG/M
3300032059	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f27	Environmental	Open in IMG/M
3300032090	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f22	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300033803	Tropical peat soil microbial communities from peatlands in Loreto, Peru - MAQ_0_10	Environmental	Open in IMG/M
3300033805	Tropical peat soil microbial communities from peatlands in Loreto, Peru - MAQ_50_10	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
prs_00391440	2070309004	Green-Waste Compost	VDVGLIVGFLAVDFFFFHDIFKAGEVTTLPQYMTGFLSIVVFAICCQS
E4A_09754860	2170459003	Grass Soil	LIVGFLAVDFLFFHDIFKAGEVTTLPQYMTGFLSIAVFATCSQSLLKSSR
F62_01012610	2170459010	Grass Soil	MRRALEFALIVGFLAVDFLFFHDIFKAGEVTTVPQYMTGFLSIAVFALCSQSLLKLRR
N57_09074380	2170459013	Grass Soil	MRRGVDVCLIVGFLAVDFLFFHDIFKAGEVTTPPEYMAGFLSILVFAICGQSLLRSARP
A10PFW1_118889431	3300001538	Permafrost	MKKIIAITLIVGFLAVDFLFFHDMLKPGEVTTVPQYLTGILSILVFALCLQSLLKDRKHIKLRYKHFAILN
C688J35102_1194114852	3300002568	Soil	EHGTPSGSATIQTMRRVLDLGLIVGFLAVDFLFFHDIFKAGEVTTMPQYMTGLLSIVVFAVCSQSLLSARL*
C688J35102_1208523572	3300002568	Soil	MRRGLDLSLIVGFLAVDFLFFHDALKAGEVITVPQYMTGFLSIAVFAMCSQSLLKLHR*
Ga0062589_1008828051	3300004156	Soil	MRRVLDVGLILGFLAVDFLFFHDIFKAGEITTLPQYMTGFLSILVFAICSQSLLKSERY*
Ga0062589_1019182602	3300004156	Soil	MRRVMDIGLIVGFLAVDFLFFHDIFKTGEVTTVPQYMTGLLSVLVFAMCSESLLKSARR*
Ga0062595_1017843462	3300004479	Soil	LIVGFLAVDFLFFHDIFKPGEVTTMPQYMTGLLSVLVFAMCSESLLKSARR*
Ga0062591_1014781622	3300004643	Soil	MRRVLDVGLILGFLAVDFLFFHDIFKAGEVTTLPQYMTGFLSILVFAICSQSLLKSERY*
Ga0074072_10514882	3300005260	Soil	MRRATDICLILGFLAVDFLFFHDLLKSGEHTTAPQYMTGLLSIAVFAICSRSLLTSVRL*
Ga0070680_1013540841	3300005336	Corn Rhizosphere	ESCRGVIYNRAMRRVMDIGLIVGFLAVDFLFFHDIFKTGEVTTVPQYMTGLLSVLVFAMCSESLLKSARR*
Ga0070661_1013693941	3300005344	Corn Rhizosphere	MDIGLIVGFLAVDFLFFHDIFKTGEVTTVPQYMTGLLSVLVFAMCSESLLKSARR*
Ga0070671_1008347602	3300005355	Switchgrass Rhizosphere	MRRAVDVLLIVGFLAVDFLFFHDLFKPGEATTPAQYMTGLLSILVIAVCGQSLLKSTRR*
Ga0070667_1004019112	3300005367	Switchgrass Rhizosphere	MRRVLDVGLIVGFLAVDFLFFHDIFKTGEVTTLPQYLTGFLSILVFASCSQSLLTSRRH*
Ga0070709_101555122	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	MRRVLDVGLILVFLGVDFLFFHDIFKAGEATTLPQYTTGSLSILVFAICSQSLLKSERY*
Ga0070713_1007982501	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	MRRVLDVGLILGFLAVDFLFFHDIFKAGEATTLPQYMTGFLSILVFAICSQSLLK
Ga0070710_102044682	3300005437	Corn, Switchgrass And Miscanthus Rhizosphere	MRRVLDVGLILGFLAVDFLFFHDIFKAGEATTLPQYTTGFLSILVFAICSQSLLKSERY*
Ga0070708_1010179622	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	MRRVLDAGLILGFLAVDFLFFHDIFKAGEVTTLPQYMTGFLSILVFAICSQSLLKSERY*
Ga0066681_108632602	3300005451	Soil	MSTLAEAEANAPSGYDQRMRRALDVALIGGFLVVDFFFFHDIFKAREVPSVPQYMTGVLSIVVFAMCCQSLLKSLR*
Ga0070707_1015982952	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	MRRALDVGLIVGFLAVDFLFFHDVMKAREVTSLPQYMTGLLSIAVLAICGQSLLKSVRH*
Ga0073909_105188571	3300005526	Surface Soil	MRRALDVALIVGFLAVDFLFFHDLFKPGESTSLPQYMTGFLSLAVFAICSQSLLKSGHR*
Ga0070741_100179033	3300005529	Surface Soil	MRRVADAVLIVGFLTVDLFFFHDIFKAGEVTTLPQYMTGFLSLLVFAICGRSLLGSVNPRS*
Ga0070741_102260814	3300005529	Surface Soil	MRRGLDVALIVGFLAVDFLFFHDIFKAGEVTTIPQYMTGFLSIAVFALCSQSLLKLRR*
Ga0070739_104685932	3300005532	Surface Soil	MRRALDVGLILGFLAVDFLFFHDVLKPGEVTTLPQCMTGFLSVAVLAVCGQSLLKSA
Ga0070735_101171942	3300005534	Surface Soil	MRRLVDITLIAGFLLVDLFFFHDIFKPGESTSLAQWMTGFLSIGVFAICAQSLLKPAR*
Ga0070697_1001631043	3300005536	Corn, Switchgrass And Miscanthus Rhizosphere	MRRVLDVGLILGFLGVDLLFFHDIFKAGEATTLPQYTTGFLSILVFAICSQSLLKSERY*
Ga0070731_100293662	3300005538	Surface Soil	MRRVLDVTLIAGFLLVDLFFFHDLFKPGESTSLPQWMTGFLSIGVFAVCGQSLLQAARRTLGFSRP*
Ga0070731_106139411	3300005538	Surface Soil	MRRTLDVLLIVGFLAVDLMFFHDIFKPGESTSLPQYMTGFLSILVFAICTQ
Ga0066703_107333002	3300005568	Soil	MRRALDVALIVGFLAVDFLFFHDIFKAGEVTTVPQYMTGFLSIAVFVLCSQSLLKLRR*
Ga0066654_105354153	3300005587	Soil	MLAYNRAMRRTLAVVLIVGFLAVDFLFFHDLLKPGEVTTLPQYMTGFLSILVFAACAQSLLKSGR*
Ga0066903_1002590762	3300005764	Tropical Forest Soil	MRRVLDVALIAGFLAVDFFFFHDIFKAGEVTSLPQYMTGVLSLAVFAICAQSLLKSSH*
Ga0066903_1002639105	3300005764	Tropical Forest Soil	MRRVLDVALIAGFLAVDFFFFHDIFKAGEVTSLPQYMTGVLSLAVFAICAQSLLKSSC*
Ga0066903_1003675031	3300005764	Tropical Forest Soil	SAGALTYNRAMRRVLDVGLIVGFLTVDFFFFHDIFKAGEVTTVPQYMTGFLSILVFAICSASLLKSARH*
Ga0066903_1011503543	3300005764	Tropical Forest Soil	MRRALDVGLIGGFLAVDFLFFHDVLKAGEVTTLPQYMTGLLSIAVLTICGQSLLKSIRH*
Ga0066903_1031622752	3300005764	Tropical Forest Soil	MRRALNIGLIAGFLAVDFLFFHDILKAGEVTTLPQYMTGFLSIAVVAICGQSLLRAARR*
Ga0075283_11005392	3300005891	Rice Paddy Soil	MRRLLDAGLIVGFLAVDFLFFHDIFKAGEVTTLPQYMTGALSIVVFAVCSQSLLNLHR*
Ga0070717_100202862	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	MRRTLDLSLILGFLAVDFLFFHDLLKPGEVTTLPQYMTGFLSVIVFAVCAQSLLAQRG*
Ga0075023_1003393582	3300006041	Watersheds	MRRVLDVGLIVGFLAVDFLFFHDIFKAGEATTLPQYMTGFLSILVFAICTQSLLKSGRH*
Ga0075017_1000126327	3300006059	Watersheds	MRRVVDVGLIVGFLAVDFLFFHDILKAGEATTVPQYMTGLLSILVFAVCGQSLLRSGHR*
Ga0070712_1002874773	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	AMRRVLDVALIVGFLAVDFFFFHDILKAGEVTTAPQYMTGFLSILVFAICSQSLLTKRR*
Ga0070712_1003807382	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	MRRVLDVGLILGFLAVDFLFFHDIFKAREVTTLPQYMTGFLSILVFAICSQSLLKSERY*
Ga0070712_1011558863	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	MRRVLDAGLIFGFLAVDFLFFHDLFKAGEVTTLPQYMTGFLSILVFVICGQSLLTQAR*
Ga0074054_121306442	3300006579	Soil	MRRVLDVGLILGFLAVDFLFFHDIFKAGEVTTLPQYVTGFLSILVFAICSQSLLKSGRY*
Ga0079222_105046143	3300006755	Agricultural Soil	VLIAGFLAVDFLFFHDLLKPGEVTTPPQYMTGFLSILVFAVCAQSLLKPKR*
Ga0105248_110977831	3300009177	Switchgrass Rhizosphere	MRRAIEVFLILGFLAVDFLFFHDILKPGDAPTPAQYMTGVLSIFVIAICAQSLLTPTRR*
Ga0126319_15840911	3300010147	Soil	MRRVLDVGLIVGFLAVDFFFFHDIFKAGEVTTVPQYMTGVLSVFVFAICGKSLLESGHHRARHASLTD*
Ga0127503_102058432	3300010154	Soil	MRRALDISLILGFLAVDFLFFHDLLKAGEVTTIPQYMTGMLSILVFAICGQSLLTQRR*
Ga0126370_120029541	3300010358	Tropical Forest Soil	MRRVLDVGLIVGFLTVDFFFFHDIFKAGEVTTVPQYMTGFLSILVFAICSASLLKSARH*
Ga0126381_1002208852	3300010376	Tropical Forest Soil	MRRALDLGLIVGFLAVDFLFFHDLFKPGEVTTLPQYMTGLLSVAVLAICGQSLLKSVSR*
Ga0126381_1030513362	3300010376	Tropical Forest Soil	MRRTLDVGLILGFLAVDFLFFHDILKAGEVTTLPQYMTGLLSIAVLAICGQSLLKSVRQ*
Ga0120159_12144502	3300012014	Permafrost	GLIYNQAMRRVLDVGLIVGFLAVDFLFFHDILKAGEVTTLPQYMTGFLSVLVFAICSQSLLMSGRH*
Ga0150985_1022513201	3300012212	Avena Fatua Rhizosphere	GLDLSLIVGFLAVDFLFFHDALKAGEVITIPQYLTGFLSIAVFAMCSQSLLKLHR*
Ga0150984_1000490151	3300012469	Avena Fatua Rhizosphere	GFLAVDFLFFHDALKAGEVITVPQYMTGFLSIAVFAMCSQSLLKLHR*
Ga0164300_102586052	3300012951	Soil	MRRVLDGGLILGFLAVDFLFFHDIFKAGEVTTLPQYMTGFLSFLVFAICSQSLLKSERY*
Ga0164298_103856162	3300012955	Soil	MRRVLDIGLIVGFLAVDFLFFHDILKTGEVTTVPQYMTGVLSLLVFAMCSESLLKSARHAG*
Ga0164303_106639811	3300012957	Soil	MRRILDIGLIVGFLAVDFLFFHDILKTGEVTTVPQYMTGVLSLLVFAMCSESLLKSARHAG*
Ga0164299_103573792	3300012958	Soil	GAMRRALDVALIVGFLAVDFLFFHDLFKPGESTSLTQYMTGFLSLAVFAICSQSLLKSGHR*
Ga0164299_109614231	3300012958	Soil	MRRVLDVGLILGFLAVDFFFFHDIFKAGEVTTLPQYMTGFLSILVFAICSQSLLKSERY*
Ga0164301_101837271	3300012960	Soil	MRRVLDVGLILGFLAVDFLFFHDIFKVGEVTTLPQYMTVFLSILVFAICSQSLLKSERY
Ga0164301_103409722	3300012960	Soil	MRRLLDVGLILGFLAVDFLFFHDIFKAGEVTTLPQYVTGFLSILVFAICSQSLLKSGRY*
Ga0164302_100179153	3300012961	Soil	MRRVLDVGLILGFLAVDFLFFHDIFKAGEVTTLPQYMTGFLSILVFAICSRSLLKSERY*
Ga0164302_110895572	3300012961	Soil	MRRALDVALIVGFLAVDFLFFHDLFKPGESTSLTQYMTGFLSLAVFAICSQSLLKSGHR*
Ga0164309_107525451	3300012984	Soil	MRRAIEVFLVVGFLAVDFLFFHDILKPGEAPTPAQYLTGLLSLFVIAICAQSLLTPTRR*
Ga0164309_115177531	3300012984	Soil	LIYNRAMRRVLDVGLILGFLAVDFLFFHDIFKAGEVTTLPQYVTGFLSILVFAICSQSLLKSGRY*
Ga0164309_118820332	3300012984	Soil	MRRAIDVFLIVGFLAVDFLFFHDLFKPGEVTTPAQYMTGLLSVVVIAVCGQSLLKS
Ga0164308_108757872	3300012985	Soil	MRRAIDVFLIVGFLAVDFLFFHDLFKPGEVTTPAQYMTGLLSVVVIAVCGQSLLKSTQH*
Ga0164307_108425832	3300012987	Soil	MRRILDIGLIVGFLAVDFLFFHDIFKTGEVTTVPQYMTGVLSLLVFAMCSESLLKSARR*
Ga0164306_108151062	3300012988	Soil	MRRAIEVFLVVGFLAVDFLFFHDILKPGEAPTPAQYLTGLLSLFVIAICAQSLLNPTRR*
Ga0157372_131229452	3300013307	Corn Rhizosphere	MRRVLDVGVIVGFLAVDFLFFHDIFKTGEVTTVPQYMTGLLSVLVFAMCSESLLKSARR*
Ga0134079_102483542	3300014166	Grasslands Soil	MSTLAEAEANAPSGYDQRMRRALDVALIGGFLVVDFFFFHDIFKAREVPSVPQYMTGVLSIVVFAMCCQSRLKSLR*
Ga0163163_115805192	3300014325	Switchgrass Rhizosphere	MRRAVDVLLIVGFLAVDFLFFHDLFKPGEATTPAQYMTGFLSILVIAVCGQSLLKSTRR*
Ga0182030_1000005673	3300014838	Bog	MRKTIDVLLIVGFLLVDLFFFHDLFKVGEVTTLPQYMTGILSIFVIIRSTQSLLDL*
Ga0157376_116432801	3300014969	Miscanthus Rhizosphere	LDVALIVGFLAVDFLFFHDLFKPGESTSLPQYMTGFLSLAVFAICSQSLLKSGHR*
Ga0132258_105549633	3300015371	Arabidopsis Rhizosphere	MDVLLIVGFLAVDFLFFHDAFKVGEVTTPAQYMTGFLSILVIAICVQSLLKSTRH*
Ga0132258_134386072	3300015371	Arabidopsis Rhizosphere	MRRVLDIGLIVGFLAVDFLFFHDIFKTGEVTTVPQYMTGVLSLLVFAMCSESLLKSAHHAG*
Ga0182036_102094022	3300016270	Soil	SRRLAYNRAMRRALDVTLIMGFLAVEFLFFHDLFKTGEVTTLPQYMTGLLSVLVVAICAVSLRKSARH
Ga0187809_101231591	3300017937	Freshwater Sediment	MRRLVDITLIAGFLLVDLFFFHDVLKPGESTSLAQWMTGFLSVGVFAICAQSLLKSAR
Ga0187809_104398991	3300017937	Freshwater Sediment	MRRTLDAALILGFLAVDFLFFHDLLKAGEVTTVPQYMTGVLSIFVFAICGQSLLTQQR
Ga0187785_100291762	3300017947	Tropical Peatland	MRRTLDIGLIVGFLAVDFLFFHDVLKAGEVTTLPQYMTGVLSILVFAICSQSLLRSVRR
Ga0187817_105832421	3300017955	Freshwater Sediment	MRKMLDIILILGFLVVDFLFFHDIFKAGEVTTLPQYLTGFLSIIVFIIAGQSLFNRTTHN
Ga0066667_106447742	3300018433	Grasslands Soil	MRPVLDVGLIVGFLAVDFLFFHDLLKAGEVTTVPQYLTGFLSIAVFAICSQSLLTARR
Ga0066662_101474343	3300018468	Grasslands Soil	MRRALDVALIVGFLAVDFLFFHDIFKAGEVTTVPQYMTGFLSIAVFVLCSQSLLKLRR
Ga0193701_10198522	3300019875	Soil	MDRTTIQGMRRVVDVGLIVGFLAVDFFFFHDILKAGEVTTLPQYMTGFLSIVVFAICSQSLLKSGR
Ga0193729_10438764	3300019887	Soil	MKRVLDVGLILGFLAVDFLFFHDIFKAGEVTTLPQYVTGFLSILVFAICSQSLLKSGRY
Ga0224712_100937543	3300022467	Corn, Switchgrass And Miscanthus Rhizosphere	MRRVLDAGLIFGFLAVDFLFFHDLFKAGEVTTLPQYMTGFLSILVFVICGQSLLTQAR
Ga0222622_100077095	3300022756	Groundwater Sediment	VDVGLIVGFLAVDFFFFHDILKAGEVTTLPQYMTGFLSIVVFAICSQSLLKSGR
Ga0247687_10048355	3300024286	Soil	SGMRRVLDAGLIFGFLAVDFLFFHDLFKAGEVTTLPQYMTGFLSILVFVICGQSLLTQAR
Ga0208219_10057003	3300025625	Arctic Peat Soil	MGRATIQGMRRGVDVALIVGFLAVDLFFFHDIFKAGESTSLPQYMTGFLSIAVFAICIQSLVKSGR
Ga0207692_101245413	3300025898	Corn, Switchgrass And Miscanthus Rhizosphere	MRRVLDVGLILGFLAVDFLFFHDIFKAGEATTLPQYTTGFLSILVFAICSQSLLKSERY
Ga0207685_100160685	3300025905	Corn, Switchgrass And Miscanthus Rhizosphere	MRRVLDVGLILGFLGVDLLFFHDIFKAGEATTLPQYTTGFLSILVFAICSQSLLKSERY
Ga0207699_100798942	3300025906	Corn, Switchgrass And Miscanthus Rhizosphere	MRRVLDVGLILGFLAVDFLFFHDIFKAGEATTLPQYTTGSLSILVFAICSQSLLKSERY
Ga0207693_111330561	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	YNQAMRRVLDVALIVGFLAVDFFFFHDILKAGEVTTAPQYMTGFLSILVFAICSQSLLTKRR
Ga0207646_109829262	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	MRRALDVGLIVGFLAVDFLFFHDVMKAREVTSLPQYMTGLLSIAVLAICGQSLLKSVRH
Ga0207644_107561073	3300025931	Switchgrass Rhizosphere	MRRAVDVLLIVGFLAVDFLFFHDLFKPGEATTPAQYMTGLLSILVIAVCGQSLLKSTRR
Ga0207658_101360682	3300025986	Switchgrass Rhizosphere	MRRVLDVGLIVGFLAVDFLFFHDIFKTGEVTTLPQYLTGFLSILVFASCSQSLLTSRRH
Ga0257147_10659541	3300026475	Soil	SLILGFLAVDFLFFHDLLKAGEVTTIPQYMTGMLSILVFAICGQSLLTQHR
Ga0209579_107666982	3300027869	Surface Soil	MRRTLDVLLIVGFLAVDLMFFHDIFKPGESTSLPQYMTGFLSILVFAICTQSLL
Ga0209168_102616762	3300027986	Surface Soil	MRRLVDITLIAGFLLVDLFFFHDIFKPGESTSLAQWMTGFLSIGVFAICAQSLLKPAR
Ga0307297_101284522	3300028754	Soil	MRRAIEVFLVVVFLAVDFLFFHDILKPGEAPTPAQYLTGLLSLFVIAICAQSLLNPTRR
Ga0265338_100098057	3300028800	Rhizosphere	MKKVVSMVLVLGFLVVDFLFFHDLFKAGEVTSFAQKLTGILSILVFVVCVQSVLESETAK
Ga0307286_100823241	3300028876	Soil	VDVGLIVGFLAVDFFFFHDILKAGEVTTLPQYMTGFLSIVVFTICSQSLLKSGR
Ga0170834_1068071932	3300031057	Forest Soil	MRRALDISLILGFLAVDFLFFHDLLKAGEVTTIPQYMTGMLSILVFAICGQSLLIQRR
Ga0308194_101716091	3300031421	Soil	VDVGLIVGFLAVDFFFFHDNLKAGEVTTLPQYMTGFLSIVVFAICSQSLLKSGR
Ga0318516_103345252	3300031543	Soil	MRRALDVALITGFLVVDFLFFHDLFKPGEVTTLPQYATGLLSILVFAICAQSLLKSGRH
Ga0318516_103774642	3300031543	Soil	MRRALDVTLIMGFLAVEFLFFHDLFKTGEVTTLPQYMTGLLSVLVVAICAVSLRKSARH
Ga0318573_106912112	3300031564	Soil	MRRALDVALITGFLVVDFLFFHDLFKPGEVTTPPQYATGLLSILVFAICAQSLLKSGRH
Ga0307476_100875011	3300031715	Hardwood Forest Soil	VMRRLVDITLIAGFLLVDLFFFHDVLKPGESTSLAQWMTGFLSVGVFAICAQSLLKSAR
Ga0310813_122922042	3300031716	Soil	IRCCTAYNRAMRRVVDLLLIVGFLAVDFLFFHDTFKAGEVTTVPQYMTGALSIVVFAVCGQSLLSSVRR
Ga0318543_103463912	3300031777	Soil	MRRALDVTLIMGFLAVEFLFFHDLFKTGEVTTLPQYMTGLLSVLVVAICAVSLRK
Ga0318498_102509291	3300031778	Soil	VALITGFLVVDFLFFHDLFKPGEVTTLPQYATGLLSILVFAICAQSLLKSGRH
Ga0318566_106399342	3300031779	Soil	RAMRRALDVTLIMGFLAVEFLFFHDLFKTGEVTTLPQYMTGLLSVLVVAICAVSLRKSAR
Ga0318557_103092981	3300031795	Soil	ALDLTLIMGFLAVEFLFFHDLFKTGEVTTLPQYMTGLLSVLVVAICAVSLRKSARH
Ga0318544_104066151	3300031880	Soil	MRRALDVALITGFLVVDFLFFHDLFKTGEATTVPQYMTGALSILVFAICGHSLLKSSGP
Ga0306925_120899541	3300031890	Soil	MRRALDISLILGFLAVDFLFFHDVLKAGETTTAAQYLTGVLSLAVFAVCGQSLLRAS
Ga0308175_1006615132	3300031938	Soil	MRRAVDVFLIVGFLAVDFLFFHDLFKPGESTSLPQYMTGFLSIAVFAICCQSLLRSGTAS
Ga0308176_116734191	3300031996	Soil	MRRGVDVALIVGFLAVDFFFFHDIFKAGEVTSLPQYMTGVLSIAVFAVCSQSLLRSAR
Ga0318533_102944743	3300032059	Soil	MRRALDVTLIMGFLAVEFLFFHDLFKTGEVTTLPQYMTGLLSVLVVAICAVSLR
Ga0318518_101102573	3300032090	Soil	MRRALDVTLIMGFLAVEFLFFHDLFKTGEVTTLPQYMTGLLSVLVVAICAVSL
Ga0306920_1035373492	3300032261	Soil	MRRALDISLILGFLAVDFLFFHDVLKAGETTTAAQYLTGVLSLAVFAVCGQSLLRASRS
Ga0314862_0162813_303_479	3300033803	Peatland	MRKVLDVVLIVGFLAVDFLFFHDLFKPGESTSLPQYMTGALSLAVFAICVPSLMKSSR
Ga0314864_0079466_365_544	3300033805	Peatland	MRRALDVGLIVGFLAVDFLFFHDLLKPGEVTTLPQYMTGVLSVAVLAICGRSLLRSSHR

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F070408

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences