Metagenome Family F070312

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F070312
Family Type	Metagenome
Number of Sequences	123
Average Sequence Length	42 residues
Representative Sequence	ELEFTDIHIGCPRQYKCVLNPNGKEPSIDKVMESLRSIAK
Number of Associated Samples	103
Number of Associated Scaffolds	123

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	0.00 %
% of genes near scaffold ends (potentially truncated)	98.37 %
% of genes from short scaffolds (< 2000 bps)	87.80 %
Associated GOLD sequencing projects	93
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.33

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (72.358 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine (28.455 % of family members)
Environment Ontology (ENVO)	Unclassified (81.301 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Saline → Water (saline) (82.114 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 17.65% β-sheet: 0.00% Coil/Unstructured: 82.35%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.33
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.33
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 123 Family Scaffolds
PF06945	DUF1289	6.50
PF11351	GTA_holin_3TM	5.69
PF00271	Helicase_C	2.44
PF08291	Peptidase_M15_3	1.63
PF00959	Phage_lysozyme	1.63
PF01476	LysM	1.63
PF11753	DUF3310	0.81
PF00166	Cpn10	0.81
PF06067	DUF932	0.81

COG ID	Name	Functional Category	% Frequency in 123 Family Scaffolds
COG3313	Predicted Fe-S protein YdhL, DUF1289 family	General function prediction only [R]	6.50
COG0234	Co-chaperonin GroES (HSP10)	Posttranslational modification, protein turnover, chaperones [O]	0.81

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	72.36 %
All Organisms	root	All Organisms	27.64 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	72.36 %
cellular organisms	root	All Organisms → cellular organisms	21.95 %
Viruses	superkingdom	All Organisms → Viruses	5.69 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	72.36 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	21.95 %
unclassified viruses	clade	All Organisms → Viruses → unclassified viruses	2.44 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.81 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	72.36 %
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	8.94 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	7.32 %
unclassified DNA viruses	no rank	All Organisms → Viruses → unclassified viruses → unclassified DNA viruses	2.44 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.81 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	72.36 %
Bacteroidetes/Chlorobi group	clade	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group	8.94 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	4.07 %
unclassified dsDNA viruses	no rank	All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses	2.44 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	2.44 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.81 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	72.36 %
Bacteroidetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	8.94 %
Prokaryotic dsDNA virus sp.	species	All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.	2.44 %
Pelagibacterales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales	1.63 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.81 %
unclassified Gammaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria	0.81 %
Methylococcales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales	0.81 %
Alteromonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Alteromonadales	0.81 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	0.81 %
Rhodobacterales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales	0.81 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.81 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	72.36 %
unclassified Bacteroidetes	no rank	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes	8.94 %
Prokaryotic dsDNA virus sp.	species	All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.	2.44 %
Pelagibacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae	1.63 %
Parvibaculaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Parvibaculaceae	0.81 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	0.81 %
Idiomarinaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Alteromonadales → Idiomarinaceae	0.81 %
Methylococcaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae	0.81 %
Rhodobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae	0.81 %
Rhodospirillaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae	0.81 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.81 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	72.36 %
Bacteroidetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium	8.94 %
Prokaryotic dsDNA virus sp.	species	All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.	2.44 %
Candidatus Pelagibacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter	1.63 %
Candidatus Endolissoclinum	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → Candidatus Endolissoclinum	0.81 %
Parvibaculum	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Parvibaculaceae → Parvibaculum	0.81 %
unclassified Rhodobacteraceae	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae → unclassified Rhodobacteraceae	0.81 %
Methylocaldum	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae → Methylocaldum	0.81 %
Idiomarina	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Alteromonadales → Idiomarinaceae → Idiomarina	0.81 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	0.81 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.81 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	72.36 %
Bacteroidetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium	8.94 %
Prokaryotic dsDNA virus sp.	species	All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.	2.44 %
unclassified Candidatus Pelagibacter	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → unclassified Candidatus Pelagibacter	1.63 %
Rhodobacteraceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae → unclassified Rhodobacteraceae → Rhodobacteraceae bacterium	0.81 %
unclassified Parvibaculum	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Parvibaculaceae → Parvibaculum → unclassified Parvibaculum	0.81 %
unclassified Candidatus Endolissoclinum	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → Candidatus Endolissoclinum → unclassified Candidatus Endolissoclinum	0.81 %
Methylocaldum szegediense	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae → Methylocaldum → Methylocaldum szegediense	0.81 %
Idiomarina abyssalis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Alteromonadales → Idiomarinaceae → Idiomarina → Idiomarina abyssalis	0.81 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	0.81 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.81 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	72.36 %
Bacteroidetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium	8.94 %
Prokaryotic dsDNA virus sp.	species	All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.	2.44 %
Candidatus Endolissoclinum sp. TMED37	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → Candidatus Endolissoclinum → unclassified Candidatus Endolissoclinum → Candidatus Endolissoclinum sp. TMED37	0.81 %
Candidatus Pelagibacter sp. TMED275	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → unclassified Candidatus Pelagibacter → Candidatus Pelagibacter sp. TMED275	0.81 %
Parvibaculum sp.	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Parvibaculaceae → Parvibaculum → unclassified Parvibaculum → Parvibaculum sp.	0.81 %
Candidatus Pelagibacter sp.	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → unclassified Candidatus Pelagibacter → Candidatus Pelagibacter sp.	0.81 %
Rhodobacteraceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae → unclassified Rhodobacteraceae → Rhodobacteraceae bacterium	0.81 %
Methylocaldum szegediense	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae → Methylocaldum → Methylocaldum szegediense	0.81 %
Idiomarina abyssalis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Alteromonadales → Idiomarinaceae → Idiomarina → Idiomarina abyssalis	0.81 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	0.81 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.81 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000101\|DelMOSum2010_c10244613	Not Available	569	Open in IMG/M
3300000115\|DelMOSum2011_c10075723	Not Available	1191	Open in IMG/M
3300000116\|DelMOSpr2010_c10101943	Not Available	1079	Open in IMG/M
3300000116\|DelMOSpr2010_c10218823	Not Available	598	Open in IMG/M
3300001355\|JGI20158J14315_10202389	Not Available	566	Open in IMG/M
3300001450\|JGI24006J15134_10007344	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae → unclassified Rhodobacteraceae → Rhodobacteraceae bacterium	5584	Open in IMG/M
3300001450\|JGI24006J15134_10140601	Not Available	805	Open in IMG/M
3300001460\|JGI24003J15210_10154196	Not Available	584	Open in IMG/M
3300001460\|JGI24003J15210_10157552	Not Available	573	Open in IMG/M
3300001472\|JGI24004J15324_10116854	Not Available	660	Open in IMG/M
3300001589\|JGI24005J15628_10035263	All Organisms → Viruses → Predicted Viral	2049	Open in IMG/M
3300001718\|JGI24523J20078_1020664	Not Available	805	Open in IMG/M
3300001718\|JGI24523J20078_1027369	Not Available	664	Open in IMG/M
3300004448\|Ga0065861_1169379	Not Available	896	Open in IMG/M
3300004457\|Ga0066224_1060180	Not Available	622	Open in IMG/M
3300004461\|Ga0066223_1035313	Not Available	554	Open in IMG/M
3300005086\|Ga0072334_11317849	Not Available	500	Open in IMG/M
3300005837\|Ga0078893_11699256	Not Available	579	Open in IMG/M
3300006025\|Ga0075474_10125165	All Organisms → Viruses	818	Open in IMG/M
3300006190\|Ga0075446_10116177	Not Available	776	Open in IMG/M
3300006193\|Ga0075445_10220927	Not Available	656	Open in IMG/M
3300006352\|Ga0075448_10105879	Not Available	880	Open in IMG/M
3300006735\|Ga0098038_1219809	Not Available	608	Open in IMG/M
3300006867\|Ga0075476_10254918	Not Available	625	Open in IMG/M
3300006868\|Ga0075481_10130247	Not Available	923	Open in IMG/M
3300006916\|Ga0070750_10349582	Not Available	624	Open in IMG/M
3300006916\|Ga0070750_10458806	Not Available	526	Open in IMG/M
3300006919\|Ga0070746_10116248	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae → Methylocaldum → Methylocaldum szegediense	1324	Open in IMG/M
3300006920\|Ga0070748_1026937	All Organisms → Viruses	2377	Open in IMG/M
3300006920\|Ga0070748_1217168	Not Available	695	Open in IMG/M
3300006929\|Ga0098036_1188780	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium	627	Open in IMG/M
3300007236\|Ga0075463_10071710	Not Available	1118	Open in IMG/M
3300007345\|Ga0070752_1365806	Not Available	539	Open in IMG/M
3300007538\|Ga0099851_1020853	Not Available	2649	Open in IMG/M
3300007778\|Ga0102954_1232441	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium	548	Open in IMG/M
3300009172\|Ga0114995_10132413	Not Available	1394	Open in IMG/M
3300009172\|Ga0114995_10467431	Not Available	690	Open in IMG/M
3300009193\|Ga0115551_1170245	Not Available	990	Open in IMG/M
3300009426\|Ga0115547_1185720	Not Available	657	Open in IMG/M
3300009428\|Ga0114915_1131645	Not Available	721	Open in IMG/M
3300009435\|Ga0115546_1108034	Not Available	1006	Open in IMG/M
3300009472\|Ga0115554_1176702	Not Available	874	Open in IMG/M
3300009495\|Ga0115571_1265840	Not Available	687	Open in IMG/M
3300009512\|Ga0115003_10182516	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Alteromonadales → Idiomarinaceae → Idiomarina → Idiomarina abyssalis	1265	Open in IMG/M
3300009512\|Ga0115003_10459800	Not Available	746	Open in IMG/M
3300009526\|Ga0115004_10042040	Not Available	2973	Open in IMG/M
3300009603\|Ga0114911_1186216	Not Available	570	Open in IMG/M
3300009790\|Ga0115012_11403816	Not Available	596	Open in IMG/M
3300010368\|Ga0129324_10025133	Not Available	2902	Open in IMG/M
3300011118\|Ga0114922_11564660	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium	530	Open in IMG/M
3300011128\|Ga0151669_156143	Not Available	510	Open in IMG/M
3300012953\|Ga0163179_10089401	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → Candidatus Endolissoclinum → unclassified Candidatus Endolissoclinum → Candidatus Endolissoclinum sp. TMED37	2204	Open in IMG/M
3300017706\|Ga0181377_1031102	Not Available	1103	Open in IMG/M
3300017708\|Ga0181369_1078165	All Organisms → cellular organisms → Bacteria	707	Open in IMG/M
3300017727\|Ga0181401_1094536	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium	765	Open in IMG/M
3300017730\|Ga0181417_1164617	Not Available	534	Open in IMG/M
3300017737\|Ga0187218_1035081	All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.	1277	Open in IMG/M
3300017738\|Ga0181428_1171870	Not Available	506	Open in IMG/M
3300017739\|Ga0181433_1148162	Not Available	553	Open in IMG/M
3300017740\|Ga0181418_1107887	Not Available	674	Open in IMG/M
3300017748\|Ga0181393_1139474	Not Available	608	Open in IMG/M
3300017748\|Ga0181393_1142477	Not Available	601	Open in IMG/M
3300017748\|Ga0181393_1166036	Not Available	545	Open in IMG/M
3300017759\|Ga0181414_1145787	Not Available	619	Open in IMG/M
3300017763\|Ga0181410_1185117	Not Available	575	Open in IMG/M
3300017765\|Ga0181413_1266322	Not Available	503	Open in IMG/M
3300017969\|Ga0181585_11061017	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium	514	Open in IMG/M
3300018036\|Ga0181600_10341322	All Organisms → cellular organisms → Bacteria	741	Open in IMG/M
3300019751\|Ga0194029_1092845	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium	526	Open in IMG/M
3300020388\|Ga0211678_10263102	Not Available	709	Open in IMG/M
3300020419\|Ga0211512_10083361	Not Available	1506	Open in IMG/M
3300020438\|Ga0211576_10275163	Not Available	880	Open in IMG/M
3300021961\|Ga0222714_10545158	All Organisms → cellular organisms → Bacteria	588	Open in IMG/M
3300022053\|Ga0212030_1020463	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium	890	Open in IMG/M
3300022074\|Ga0224906_1200554	Not Available	544	Open in IMG/M
3300022187\|Ga0196899_1158944	All Organisms → cellular organisms → Bacteria	623	Open in IMG/M
3300022907\|Ga0255775_1236562	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium	673	Open in IMG/M
3300022923\|Ga0255783_10074848	Not Available	1901	Open in IMG/M
3300025048\|Ga0207905_1042091	All Organisms → Viruses	718	Open in IMG/M
3300025071\|Ga0207896_1049702	Not Available	687	Open in IMG/M
3300025079\|Ga0207890_1038080	Not Available	856	Open in IMG/M
3300025120\|Ga0209535_1030075	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → unclassified Candidatus Pelagibacter → Candidatus Pelagibacter sp.	2579	Open in IMG/M
3300025120\|Ga0209535_1141506	Not Available	776	Open in IMG/M
3300025127\|Ga0209348_1101162	Not Available	895	Open in IMG/M
3300025132\|Ga0209232_1021573	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → unclassified Candidatus Pelagibacter → Candidatus Pelagibacter sp. TMED275	2525	Open in IMG/M
3300025138\|Ga0209634_1055226	Not Available	1937	Open in IMG/M
3300025138\|Ga0209634_1059347	Not Available	1848	Open in IMG/M
3300025138\|Ga0209634_1132212	Not Available	1046	Open in IMG/M
3300025543\|Ga0208303_1025019	Not Available	1648	Open in IMG/M
3300025645\|Ga0208643_1028525	Not Available	1868	Open in IMG/M
3300025645\|Ga0208643_1144692	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium	608	Open in IMG/M
3300025652\|Ga0208134_1019119	All Organisms → cellular organisms → Bacteria → Proteobacteria	2603	Open in IMG/M
3300025674\|Ga0208162_1084815	Not Available	972	Open in IMG/M
3300025759\|Ga0208899_1205134	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium	623	Open in IMG/M
3300025769\|Ga0208767_1070598	Not Available	1514	Open in IMG/M
3300025806\|Ga0208545_1116863	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium	676	Open in IMG/M
3300025870\|Ga0209666_1141303	Not Available	1107	Open in IMG/M
3300025886\|Ga0209632_10369853	All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.	691	Open in IMG/M
3300027522\|Ga0209384_1019927	Not Available	2148	Open in IMG/M
3300027704\|Ga0209816_1041352	Not Available	2166	Open in IMG/M
3300027791\|Ga0209830_10241999	Not Available	823	Open in IMG/M
3300028194\|Ga0257106_1118938	Not Available	944	Open in IMG/M
3300028197\|Ga0257110_1186071	Not Available	813	Open in IMG/M
3300031519\|Ga0307488_10301753	Not Available	1031	Open in IMG/M
3300031519\|Ga0307488_10372193	Not Available	893	Open in IMG/M
3300031519\|Ga0307488_10776305	Not Available	533	Open in IMG/M
3300031596\|Ga0302134_10337086	Not Available	565	Open in IMG/M
3300031599\|Ga0308007_10151568	Not Available	828	Open in IMG/M
3300031605\|Ga0302132_10271771	All Organisms → cellular organisms → Bacteria	794	Open in IMG/M
3300031622\|Ga0302126_10202274	Not Available	708	Open in IMG/M
3300031626\|Ga0302121_10008965	Not Available	3713	Open in IMG/M
3300031638\|Ga0302125_10113523	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	881	Open in IMG/M
3300031638\|Ga0302125_10258912	Not Available	527	Open in IMG/M
3300031696\|Ga0307995_1136872	All Organisms → cellular organisms → Bacteria	920	Open in IMG/M
3300031848\|Ga0308000_10316995	All Organisms → cellular organisms → Bacteria	593	Open in IMG/M
3300032277\|Ga0316202_10637361	Not Available	503	Open in IMG/M
3300032373\|Ga0316204_11089720	Not Available	561	Open in IMG/M
3300033742\|Ga0314858_111794	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Parvibaculaceae → Parvibaculum → unclassified Parvibaculum → Parvibaculum sp.	696	Open in IMG/M
3300033742\|Ga0314858_146994	Not Available	605	Open in IMG/M
3300034374\|Ga0348335_097537	All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.	936	Open in IMG/M
3300034375\|Ga0348336_028795	Not Available	2663	Open in IMG/M
3300034375\|Ga0348336_165923	Not Available	635	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	100.00%

Habitat	Taxonomy	Distribution
Marine	Environmental → Aquatic → Marine	97.56%
Freshwater	Environmental → Aquatic → Freshwater	0.81%
Non-Marine Saline And Alkaline	Environmental → Aquatic → Non-Marine Saline And Alkaline	0.81%
Unclassified	Environmental → Aquatic → Unclassified	0.81%

Habitat	Taxonomy	Distribution
Oceanic	Environmental → Aquatic → Marine → Oceanic	33.33%
Coastal	Environmental → Aquatic → Marine → Coastal	30.08%
Strait	Environmental → Aquatic → Marine → Strait	11.38%
Unclassified	Environmental → Aquatic → Marine → Unclassified	9.76%
Neritic Zone	Environmental → Aquatic → Marine → Neritic Zone	4.88%
Intertidal Zone	Environmental → Aquatic → Marine → Intertidal Zone	4.06%
Pelagic	Environmental → Aquatic → Marine → Pelagic	4.06%
River	Environmental → Aquatic → Freshwater → River	0.81%
Saline	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline	0.81%
Unclassified	Environmental → Aquatic → Unclassified → Unclassified	0.81%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Aquatic → Marine → Oceanic → Unclassified	32.52%
Unclassified	Environmental → Aquatic → Marine → Coastal → Unclassified	28.46%
Unclassified	Environmental → Aquatic → Marine → Strait → Unclassified	11.38%
Unclassified	Environmental → Aquatic → Marine → Unclassified → Unclassified	9.76%
Unclassified	Environmental → Aquatic → Marine → Neritic Zone → Unclassified	4.88%
Unclassified	Environmental → Aquatic → Marine → Pelagic → Unclassified	4.06%
Salt Marsh	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh	3.25%
Sediment	Environmental → Aquatic → Marine → Coastal → Sediment	1.63%
Unclassified	Environmental → Aquatic → Freshwater → River → Unclassified	0.81%
Sediment	Environmental → Aquatic → Marine → Oceanic → Sediment	0.81%
Unclassified	Environmental → Aquatic → Marine → Intertidal Zone → Unclassified	0.81%
Unclassified	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified	0.81%
Unclassified	Environmental → Aquatic → Unclassified → Unclassified → Unclassified	0.81%

Habitat	Taxonomy	Distribution
Marine	Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine	28.46%
Aqueous	Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous	19.51%
Seawater	Environmental → Aquatic → Marine → Strait → Unclassified → Seawater	11.38%
Marine	Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine	6.50%
Pelagic Marine	Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine	4.06%
Salt Marsh	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh	3.25%
Marine	Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine	3.25%
Sackhole Brine	Environmental → Aquatic → Marine → Coastal → Unclassified → Sackhole Brine	2.44%
Marine	Environmental → Aquatic → Marine → Coastal → Unclassified → Marine	2.44%
Marine	Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine	2.44%
Deep Ocean	Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean	1.63%
Marine	Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine	1.63%
Microbial Mat	Environmental → Aquatic → Marine → Coastal → Sediment → Microbial Mat	1.63%
Sea-Ice Brine	Environmental → Aquatic → Marine → Coastal → Unclassified → Sea-Ice Brine	1.63%
Pelagic Marine	Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine	1.63%
Freshwater	Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater	0.81%
Seawater	Environmental → Aquatic → Marine → Oceanic → Unclassified → Seawater	0.81%
Deep Subsurface	Environmental → Aquatic → Marine → Oceanic → Sediment → Deep Subsurface	0.81%
Marine	Environmental → Aquatic → Marine → Coastal → Unclassified → Marine	0.81%
Marine Surface Water	Environmental → Aquatic → Marine → Coastal → Unclassified → Marine Surface Water	0.81%
Freshwater To Marine Saline Gradient	Environmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient	0.81%
Marine	Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine	0.81%
Estuarine Water	Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water	0.81%
Water	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Water	0.81%
Water	Environmental → Aquatic → Unclassified → Unclassified → Unclassified → Water	0.81%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000101	Marine microbial communities from Delaware Coast, sample from Delaware MO Early Summer May 2010	Environmental	Open in IMG/M
3300000115	Marine microbial communities from Delaware Coast, sample from Delaware MO Summer July 2011	Environmental	Open in IMG/M
3300000116	Marine microbial communities from Delaware Coast, sample from Delaware MO Spring March 2010	Environmental	Open in IMG/M
3300001355	Pelagic Microbial community sample from North Sea - COGITO 998_met_08	Environmental	Open in IMG/M
3300001450	Marine viral communities from the Pacific Ocean - LP-53	Environmental	Open in IMG/M
3300001460	Marine viral communities from the Pacific Ocean - LP-28	Environmental	Open in IMG/M
3300001472	Marine viral communities from the Pacific Ocean - LP-32	Environmental	Open in IMG/M
3300001589	Marine viral communities from the Pacific Ocean - LP-40	Environmental	Open in IMG/M
3300001718	Marine viral communities from the Pacific Ocean - LP-48	Environmental	Open in IMG/M
3300004448	Marine viral communities from Newfoundland, Canada BC-1	Environmental	Open in IMG/M
3300004457	Marine viral communities from Newfoundland, Canada MC-1	Environmental	Open in IMG/M
3300004461	Marine viral communities from Newfoundland, Canada BC-2	Environmental	Open in IMG/M
3300005086	Microbial Community from Halfdan Field MHDA3	Environmental	Open in IMG/M
3300005837	Exploring phylogenetic diversity in Port Hacking ocean in Sydney, Australia - Port Hacking PH4 TJ4-TJ18	Environmental	Open in IMG/M
3300006025	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_22_D_<0.8_DNA	Environmental	Open in IMG/M
3300006190	Marine microbial communities from the West Antarctic Peninsula - Coastal water metaG058-DNA	Environmental	Open in IMG/M
3300006193	Marine microbial communities from the West Antarctic Peninsula - Coastal water metaG029-DNA	Environmental	Open in IMG/M
3300006352	Marine microbial communities from the West Antarctic Peninsula - Coastal water metaG108-DNA	Environmental	Open in IMG/M
3300006735	Marine viral communities from the Subarctic Pacific Ocean - 5B_ETSP_OMZ_AT15132_CsCl metaG	Environmental	Open in IMG/M
3300006867	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_22_N_<0.8_DNA	Environmental	Open in IMG/M
3300006868	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_29_N_>0.8_DNA	Environmental	Open in IMG/M
3300006916	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_24	Environmental	Open in IMG/M
3300006919	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_21	Environmental	Open in IMG/M
3300006920	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_12	Environmental	Open in IMG/M
3300006929	Marine viral communities from the Subarctic Pacific Ocean - 4_ETSP_OMZ_AT15127 metaG	Environmental	Open in IMG/M
3300007236	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Fall_30_>0.8_DNA	Environmental	Open in IMG/M
3300007345	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Aug_30	Environmental	Open in IMG/M
3300007538	Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_2 Viral MetaG	Environmental	Open in IMG/M
3300007778	Water microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG R2A_C_H2O_MG	Environmental	Open in IMG/M
3300009172	Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_154	Environmental	Open in IMG/M
3300009193	Pelagic marine microbial communities from North Sea - COGITO_mtgs_110321	Environmental	Open in IMG/M
3300009426	Pelagic marine microbial communities from North Sea - COGITO_mtgs_100420	Environmental	Open in IMG/M
3300009428	Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG Antarct_55	Environmental	Open in IMG/M
3300009435	Pelagic marine microbial communities from North Sea - COGITO_mtgs_100413	Environmental	Open in IMG/M
3300009472	Pelagic marine microbial communities from North Sea - COGITO_mtgs_110404	Environmental	Open in IMG/M
3300009495	Pelagic marine microbial communities from North Sea - COGITO_mtgs_120531	Environmental	Open in IMG/M
3300009512	Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB11_88	Environmental	Open in IMG/M
3300009526	Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB11_90	Environmental	Open in IMG/M
3300009603	Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_904	Environmental	Open in IMG/M
3300009790	Marine eukaryotic phytoplankton communities from Atlantic Ocean - Tropical Atlantic ANT10 Metagenome	Environmental	Open in IMG/M
3300010368	Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Spr_15_0.2_DNA	Environmental	Open in IMG/M
3300011118	Deep subsurface microbial communities from Aarhus Bay to uncover new lineages of life (NeLLi) - Aarhus_00045 metaG	Environmental	Open in IMG/M
3300011128	Seawater microbial communities from Japan Sea near Toyama Prefecture, Japan - 2014_2, 0.02	Environmental	Open in IMG/M
3300012953	Marine eukaryotic phytoplankton communities from the Atlantic Ocean - Atlantic ANT 2 Metagenome	Environmental	Open in IMG/M
3300017706	Marine viral communities from the Subarctic Pacific Ocean - Lowphox_13 viral metaG	Environmental	Open in IMG/M
3300017708	Marine viral communities from the Subarctic Pacific Ocean - Lowphox_04 viral metaG	Environmental	Open in IMG/M
3300017727	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 24 SPOT_SRF_2011-07-20	Environmental	Open in IMG/M
3300017730	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 40 SPOT_SRF_2013-02-13	Environmental	Open in IMG/M
3300017737	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 14 SPOT_SRF_2010-08-11 (version 2)	Environmental	Open in IMG/M
3300017738	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 51 SPOT_SRF_2014-02-12	Environmental	Open in IMG/M
3300017739	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 56 SPOT_SRF_2014-09-10	Environmental	Open in IMG/M
3300017740	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 41 SPOT_SRF_2013-03-13	Environmental	Open in IMG/M
3300017748	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 16 SPOT_SRF_2010-10-21	Environmental	Open in IMG/M
3300017759	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 37 SPOT_SRF_2012-11-28	Environmental	Open in IMG/M
3300017763	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 33 SPOT_SRF_2012-06-20	Environmental	Open in IMG/M
3300017765	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 36 SPOT_SRF_2012-09-28	Environmental	Open in IMG/M
3300017969	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071407BT metaG (megahit assembly)	Environmental	Open in IMG/M
3300018036	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 041406US metaG (megahit assembly)	Environmental	Open in IMG/M
3300019751	Freshwater microbial communities from the Broadkill River, Lewes, Delaware, United States ? IW18Oct16_MG	Environmental	Open in IMG/M
3300020388	Marine microbial communities from Tara Oceans - TARA_B100001063 (ERX555965-ERR599064)	Environmental	Open in IMG/M
3300020419	Marine microbial communities from Tara Oceans - TARA_X000000263 (ERX555964-ERR598955)	Environmental	Open in IMG/M
3300020438	Marine microbial communities from Tara Oceans - TARA_B100001094 (ERX555907-ERR598942)	Environmental	Open in IMG/M
3300021961	Estuarine water microbial communities from San Francisco Bay, California, United States - C33_3D	Environmental	Open in IMG/M
3300022053	Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1504_2 Viral MetaG (v2)	Environmental	Open in IMG/M
3300022074	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 56 SPOT_SRF_2014-09-10 (v2)	Environmental	Open in IMG/M
3300022187	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Sep_01 (v3)	Environmental	Open in IMG/M
3300022907	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011511BT metaG	Environmental	Open in IMG/M
3300022923	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011507BT metaG	Environmental	Open in IMG/M
3300025048	Marine viral communities from the Subarctic Pacific Ocean - LP-49 (SPAdes)	Environmental	Open in IMG/M
3300025071	Marine viral communities from the Pacific Ocean - LP-36 (SPAdes)	Environmental	Open in IMG/M
3300025079	Marine viral communities from the Pacific Ocean - LP-48 (SPAdes)	Environmental	Open in IMG/M
3300025120	Marine viral communities from the Pacific Ocean - LP-28 (SPAdes)	Environmental	Open in IMG/M
3300025127	Marine viral communities from the Pacific Ocean - ETNP_2_30 (SPAdes)	Environmental	Open in IMG/M
3300025132	Marine viral communities from the Pacific Ocean - ETNP_2_60 (SPAdes)	Environmental	Open in IMG/M
3300025138	Marine viral communities from the Pacific Ocean - LP-40 (SPAdes)	Environmental	Open in IMG/M
3300025543	Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1504_2 Viral MetaG (SPAdes)	Environmental	Open in IMG/M
3300025645	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_12 (SPAdes)	Environmental	Open in IMG/M
3300025652	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_31 (SPAdes)	Environmental	Open in IMG/M
3300025674	Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1M Viral MetaG (SPAdes)	Environmental	Open in IMG/M
3300025759	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_24 (SPAdes)	Environmental	Open in IMG/M
3300025769	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_21 (SPAdes)	Environmental	Open in IMG/M
3300025806	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_30_<0.8_DNA (SPAdes)	Environmental	Open in IMG/M
3300025870	Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI037_S3LV_125m_DNA (SPAdes)	Environmental	Open in IMG/M
3300025886	Pelagic Microbial community sample from North Sea - COGITO 998_met_10 (SPAdes)	Environmental	Open in IMG/M
3300027522	Marine microbial communities from the West Antarctic Peninsula - Coastal water metaG058-DNA (SPAdes)	Environmental	Open in IMG/M
3300027704	Marine microbial communities from the West Antarctic Peninsula - Coastal water metaG017-DNA (SPAdes)	Environmental	Open in IMG/M
3300027791	Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB8_130 (SPAdes)	Environmental	Open in IMG/M
3300028194	Marine microbial communities from Northeast Subartic Pacific Ocean, Canada - LP_J_2011_P26_10m	Environmental	Open in IMG/M
3300028197	Marine microbial communities from Northeast Subartic Pacific Ocean, Canada - LP_J_2015_P26_10m	Environmental	Open in IMG/M
3300031519	Sea-ice brine microbial communities from Beaufort Sea near Barrow, Alaska, United States - SB 0.2	Environmental	Open in IMG/M
3300031596	Marine microbial communities from Western Arctic Ocean, Canada - CB9_SCM	Environmental	Open in IMG/M
3300031599	Marine microbial communities from water near the shore, Antarctic Ocean - #71	Environmental	Open in IMG/M
3300031605	Marine microbial communities from Western Arctic Ocean, Canada - CB9_32.1	Environmental	Open in IMG/M
3300031622	Marine microbial communities from Western Arctic Ocean, Canada - CB4_20m	Environmental	Open in IMG/M
3300031626	Marine microbial communities from Western Arctic Ocean, Canada - CB21_surface	Environmental	Open in IMG/M
3300031638	Marine microbial communities from Western Arctic Ocean, Canada - CB4_surface	Environmental	Open in IMG/M
3300031696	Marine microbial communities from Ellis Fjord, Antarctic Ocean - #262	Environmental	Open in IMG/M
3300031848	Marine microbial communities from water near the shore, Antarctic Ocean - #3	Environmental	Open in IMG/M
3300032277	Microbial mat bacterial communities from mineral coupon in-situ incubated in ocean water Damariscotta River, Maine, United States - 3-month pyrrhotite	Environmental	Open in IMG/M
3300032373	Microbial mat bacterial communities from mineral coupon in-situ incubated in ocean water Damariscotta River, Maine, United States - 6-month pyrrhotite 2	Environmental	Open in IMG/M
3300033742	Sea-ice brine viral communities from Beaufort Sea near Barrow, Alaska, United States - 2018 seawater	Environmental	Open in IMG/M
3300034374	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Aug_31 (v4)	Environmental	Open in IMG/M
3300034375	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Aug_30 (v4)	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
DelMOSum2010_102446133	3300000101	Marine	IEFTDKSIGCPRQYQCVYNPGGSEPNIDDVMKSLRDIAK*
DelMOSum2011_100757234	3300000115	Marine	IRVGCPKQYKCVLNPNGSEPSIDKVMESLRSIAK*
DelMOSpr2010_101019433	3300000116	Marine	ELEFTDIHIGCPRKYKCKLNPNGKEPSIDQVMESLRSIAK*
DelMOSpr2010_102188231	3300000116	Marine	ELEFTDIHIGCPRKYKCKLNPNGKEPSIDQVMESLRSISKVSV
JGI20158J14315_102023892	3300001355	Pelagic Marine	KTYELEFTDIQIGCPRKYKCKLNPNGKEPSIDQVMESLRSIAKVSV
JGI24006J15134_100073441	3300001450	Marine	FTDISIGCPRSYKCKLNPNGKEPNIDQVMESLRSITK*
JGI24006J15134_101406014	3300001450	Marine	FTDLANGCPRKYQCVLDPNGKEPSIDSVMESLRSIAK*
JGI24003J15210_101541963	3300001460	Marine	LSFQDVRIGCVKNFRCKLNPNGKEPSIDQVMESLRSIAK*
JGI24003J15210_101575521	3300001460	Marine	YVANSGTNRKTYELEYTDIRVGCPKSYRCVYNPGDEPSIDKVMESLRGIAK*
JGI24004J15324_101168541	3300001472	Marine	KTFTLDFTDLANGCPRKYKCVLDPNGSEPSIDSVMESLRSIAK*
JGI24005J15628_100352633	3300001589	Marine	LSFQDMSIGCVRKFRCILNPNGKEPSIDSVMESLRSIAK*
JGI24523J20078_10206645	3300001718	Marine	EFTDKIIGCPRQYQCIYNPGGSEPNIDDVMKSLRDIAK*
JGI24523J20078_10273694	3300001718	Marine	TDKRIGCPRQYQCIYNPNSKEPNIDDVMKSLQDAVK*
Ga0065861_11693794	3300004448	Marine	EIEFTDKSIGCPRKYKCVYNPNSKEPNINDVMKSLKDAVK*
Ga0066224_10601804	3300004457	Marine	EMEFTDIRIGCPKQYRCVVNRNSKIPNIDDVMKSLRDIAK*
Ga0066223_10353131	3300004461	Marine	EIEFTDIHIGCPRSYRCVYNPGGSEPSIDDVMKSLRDIAK*
Ga0072334_113178491	3300005086	Water	ANNGTNRKTYELEYNDIRVGCPRSYRCKFNPGDEPSIDKVMESLRGIAK*
Ga0078893_116992561	3300005837	Marine Surface Water	VRVGCPRQYKCVHNPNSKEPNINDVMESLRSITK*
Ga0075474_101251655	3300006025	Aqueous	VGAQKTYELEFTDIHVGCPRNYQCVFNPNGQEPSIDKVMESLRSIAK*
Ga0075446_101161771	3300006190	Marine	TDIANGCPRKYQCVLDPNGKEPSIDSVMDSLRSIAK*
Ga0075445_102209273	3300006193	Marine	FTDLANGCPRKYKCVLDPNGKEPSIDSVMESLRSIAQ*
Ga0075448_101058794	3300006352	Marine	DFTDLANGCPRKYKCVLDPNGKEPSIDSVMESLRSIAK*
Ga0098038_12198091	3300006735	Marine	QKTYELEFTDIAVGCPRKYKCKLNPNGKEPNIDQVMESLRSIAK*
Ga0075476_102549184	3300006867	Aqueous	NKTYELEFTDIRIGCPKQYKCVFNPNGDEPSIDKVMESLRSIAK*
Ga0075481_101302471	3300006868	Aqueous	KTYELEFTDIHIGCPRKYKCKLNPNGKEPSIDQVMESLRSIAK*
Ga0070750_103495823	3300006916	Aqueous	IRVGCPKQYKCALNPNGSEPSIDKVMESLRSIAK*
Ga0070750_104588063	3300006916	Aqueous	NSGTNRKTYELEYTDIRVGCPKSYRCVYNPGDEPSIDKVMESLRGIAK*
Ga0070746_101162483	3300006919	Aqueous	EMEFTDISIGCPRKYKCKLNPNGMEPSIDSVMESLRSIAE*
Ga0070748_10269371	3300006920	Aqueous	TDIHVGCPRSYRCVFNPNGQEPSIDKVMESLRSIAK*
Ga0070748_12171684	3300006920	Aqueous	GAQKTYELEFTDIHVGCPRNYQCVFNPNGQEPSIDKVMESLRSIAK*
Ga0098036_11887801	3300006929	Marine	IHIGCPRQYKCVLNPNGKEPSIDKVMESLRSIAK*
Ga0075463_100717105	3300007236	Aqueous	IYVGAQKTYELEFTDIHVGCPRNYQCVFNPNGQEPSIDKVMESLRSIAK*
Ga0070752_13658063	3300007345	Aqueous	KTFELEFADIRVGCPKQYKCVLNPNGSEPSIDKVMESLRSIAK*
Ga0099851_10208539	3300007538	Aqueous	YVGAQKTYELEFTDIHVGCPRNYQCVFNPNGQEPSIDKVMESLRSIAK*
Ga0102954_12324411	3300007778	Water	IYVGAQKTYELEFTDVHVGCPRNYQCVFNPNGQEPSIDKVMESLRSIAK*
Ga0114995_101324134	3300009172	Marine	FTDIHIGCPRSYRCVYNPGGSEPSIDDVMKSLRDIAK*
Ga0114995_104674314	3300009172	Marine	FTLDFTDIANGCPRQYKCILNPNGKEPSIDSVMESLRSIAK*
Ga0115551_11702454	3300009193	Pelagic Marine	QKTYELEFTDIHIGCPRKYKCKLNPNGKEPSIDQVMESLRSIAK*
Ga0115547_11857203	3300009426	Pelagic Marine	IEFTDKSIGCPRQYQCVYNPGGSEPNIDDVMESLRDIAK*
Ga0114915_11316451	3300009428	Deep Ocean	GAQKTFTLDFTDIANGCPRKYQCVLDPNGKEPSIDSVMESLRSIAK*
Ga0115546_11080343	3300009435	Pelagic Marine	FTDVRVGCPKQYKCLHNPNSKEPSIDKVMESLRSIAK*
Ga0115554_11767023	3300009472	Pelagic Marine	AQKTYELEFTDIHIGCPRKYKCKLNPNGKEPSIDQVMESLRSIAK*
Ga0115571_12658402	3300009495	Pelagic Marine	GAQKTYELEFTDIQIGCPRKYKCKLNPNGKEPSIDQVMESLRSIAK*
Ga0115003_101825161	3300009512	Marine	GAQKTFTLDFTDLANGCPRKYKCVLDPNGKMPSIDSVMESLRSIAK*
Ga0115003_104598001	3300009512	Marine	QGAQKTFTLDFTDLANGCPRKYQCVLDPNGKEPSIDSVMESLRSIAK*
Ga0115004_100420401	3300009526	Marine	TFEIEFTDVQISCPRKYKCVYNPNGTEPNIDDVMKSLRDIAK*
Ga0114911_11862163	3300009603	Deep Ocean	NRTFELSFQDVRIGCVKNFRCVLNPNGKEPSIDQVMESLRSIAK*
Ga0115012_114038161	3300009790	Marine	ELEFTDIHIGCPRQYKCVLNPNGKEPSIDKVMESLRSIAK*
Ga0129324_100251336	3300010368	Freshwater To Marine Saline Gradient	TDIHVGCPRNYQCVFNPNGQEPSIDKVMESLRSIAK*
Ga0114922_115646601	3300011118	Deep Subsurface	LEFTDIHVGCPRNYQCVFNPNGQEPSIDKVMESLRSIAK*
Ga0151669_1561431	3300011128	Marine	TDIHIGCPRKYKCVLNPNGKEPSIDKVMESLRSIAK*
Ga0163179_100894011	3300012953	Seawater	ANKTYELEFTDVRVGCPKQYKCLHNPNSKEPSIDKVMESLRSIAK*
Ga0181377_10311021	3300017706	Marine	VGAQRTYELEFTDIHIGCPRSYKCKLNPNGKEPSIDQVMESLRSIAK
Ga0181369_10781652	3300017708	Marine	AQKTYELEFTDISIGCPRKYKCKLNPNGKEPNIDQVMESLRSIAD
Ga0181401_10945364	3300017727	Seawater	DIRVGCPKQFRCQYRRLNDKEPSIDSVMESLRSIAK
Ga0181417_11646173	3300017730	Seawater	FTDIHIGCPRKYKCKLNPNGKEPNIDQVMESLRSIAK
Ga0187218_10350811	3300017737	Seawater	TFELSFQDVRIGCVKNFRCVLNPNGKEPSIDQVMESLRSIAK
Ga0181428_11718701	3300017738	Seawater	TYEMEFTDISIGCPRKYKCKLNPNGKEPSIDQVMESLRSISK
Ga0181433_11481622	3300017739	Seawater	YIGAQKTYELEFTDIAVGCPRKYKCKLNPNGKEPNIDQVMESLRGIAK
Ga0181418_11078874	3300017740	Seawater	ANKTYEMEFTDVRVGCPKQYKCVLNPNGKEPSIDKVMESLRSIAK
Ga0181393_11394741	3300017748	Seawater	YQGANKTFEMEFTDIRIGCPKQYKCVLNPNGKEPSIDKVMESLRSIAK
Ga0181393_11424771	3300017748	Seawater	KTFELSFQDMSIGCVRQFRCLLNPNGKEPSIDSVMESLRSIAK
Ga0181393_11660361	3300017748	Seawater	TNRKTYELEYTDIRVGCPKSYFCEYNPGDEPSIDKVMESLRGIAK
Ga0181414_11457874	3300017759	Seawater	ANKTFEMEFTDIRIGCPKQYKCVLNPNGKEPSIDKVMESLRSIAK
Ga0181410_11837221	3300017763	Seawater	CVYVANNGTNRKTYELEYNDIRVGCPRSYRCKFNPGDEPSIDKVMESLRGIAK
Ga0181410_11851171	3300017763	Seawater	EGAGKTFEIEFTDKIIGCPRQYQCVYNPGGTEPSIDQVMESLRSIAK
Ga0181413_12663221	3300017765	Seawater	AQKTYELEFTDIHIGCPRKYKCKLNPNGKEPSIDQVMESLRSISK
Ga0181585_110610171	3300017969	Salt Marsh	FTDVHVGCPRNYQCVFNPNGQEPSINKVMESLRSIAK
Ga0181600_103413222	3300018036	Salt Marsh	FTDIRVGCPKSYRCVLNPNGKEPSISDVMDSLRSIKGE
Ga0194029_10928451	3300019751	Freshwater	AQRTYELEFTDIHVGCPRSYRCVFNPNGQEPSIDKVMESLRSIAK
Ga0211678_102631021	3300020388	Marine	RTYELEFTDIHIGCPRSYKCKLNPNGKEPSIDQVMESLRSIAK
Ga0211512_100833616	3300020419	Marine	NRTFELSFQDIRVGCVKNFQCVLNPNGKEPNIDDVMESLRSIAK
Ga0211576_102751633	3300020438	Marine	EIEFTDKSIGCPRQYQCVYNPGGSEPNIDDVMESLRDIAK
Ga0222714_105451581	3300021961	Estuarine Water	TDIRVGCPKSYRCVLNPNGKEPSISDVMDSLRSIKGD
Ga0212030_10204635	3300022053	Aqueous	AQKTYELEFTDIHVGCPRNYQCVFNPNGQEPSIDKVMESLRSIAK
Ga0224906_12005542	3300022074	Seawater	IYIGAQKTYELEFTDISIGCPRKYKCKLNPNGKEPSIDQVMESLRSIAK
Ga0196899_11589441	3300022187	Aqueous	VYRGANKTYEMEFTDIRVGCPKSYRCVLNPNGKEPSIDDIMDSLRSIKGD
Ga0255775_12365624	3300022907	Salt Marsh	GANKTYEMEFADIRVGCPKQYQCVFNPNGNEPSIDKVMESLRSIAK
Ga0255783_100748488	3300022923	Salt Marsh	ADIRVGCPKQYQCVFNPNGNEPSIDKVMESLRSIAK
Ga0207905_10420913	3300025048	Marine	AGRTFEIEFTDKRIGCPRQYQCIYNPNGKEPNIDDVMKSLQDAVK
Ga0207896_10497021	3300025071	Marine	EFTDKIIGCPRQYQCIYNPGGSEPNIDDVMKSLRDIAK
Ga0207890_10380801	3300025079	Marine	FTDKRIGCPRQYQCIYNPNSKEPNIDDVMKSLQDAVK
Ga0209535_10300757	3300025120	Marine	GANKTFELSFQDMSIGCVRKFRCVLNPNGSEPSIDSVMESLRSIAK
Ga0209535_11415061	3300025120	Marine	RTFEIEFTDKRIGCPRQYQCIYNPNSKEPNIDDVMKSLQDAVK
Ga0209348_11011623	3300025127	Marine	ELEFADVRVGCPRQYKCIHNPNSKEPNINDVMESLRSITK
Ga0209232_10215734	3300025132	Marine	KTFEIEFTDKITGCPRQYQCVYNPGGTEPSIDQVMESLRSIAK
Ga0209634_10552261	3300025138	Marine	ADIRVGCPKQFRCEYSKLNSKEPSIDQVMESLRSIAK
Ga0209634_10593477	3300025138	Marine	DMSIGCVRKFRCVLNPNGKEPSIENVMESLRSIAK
Ga0209634_11322121	3300025138	Marine	YVANSGTNRKTYELEYTDIRVGCPRSYLCRYNPGDPPSIDKVMESLRGIAK
Ga0208303_10250191	3300025543	Aqueous	QKTYELEFTDIHVGCPRNYQCVFNPNGQEPSIDKVMESLRSIAK
Ga0208643_10285251	3300025645	Aqueous	KTYELEFTDIHIGCPRKYKCKLNPNGKEPSIDQVMESLRSIAK
Ga0208643_11446921	3300025645	Aqueous	TDIHVGCPRSYRCVFNPNGQEPSIDKVMESLRSIAK
Ga0208134_10191191	3300025652	Aqueous	ELEFTDIHVGCPRSYRCVFNPNGQEPSIDKVMESLRSIAK
Ga0208162_10848154	3300025674	Aqueous	IYVGAQKTYELEFTDIHIGCPRKYKCKLNPNGKEPSIDQVMESLRSIAK
Ga0208899_12051344	3300025759	Aqueous	VGAQKTYELEFTDIHVGCPRNYQCVFNPNGQEPSIDKVMESLRSIAK
Ga0208767_10705981	3300025769	Aqueous	KTYELEFTDIAIGCPRKYKCKLNPNGKEPNIDQVMESLRGIAK
Ga0208545_11168631	3300025806	Aqueous	GANKTYEMEFTDIRIGCPKSYKCVSNPNSSEPSIDDVLKSLRDIAK
Ga0209666_11413034	3300025870	Marine	ELEFTDIHIGCPRKYKCKLNPNGSEPSIDSVMESLRSIAK
Ga0209632_103698531	3300025886	Pelagic Marine	RKTYELEYNDIRVGCPRSYRCKFNPGDEPSIDKVMESLRGIAK
Ga0209384_10199271	3300027522	Marine	AQKTFTLDFTDLANGCPRKYKCVLDPNGKEPSIDSVMESLRSIAK
Ga0209816_10413526	3300027704	Marine	LDFTDLANGCPRKYKCVLDPNGKEPSIDSVMESLRSIAQ
Ga0209830_102419994	3300027791	Marine	EFTDVQIGCPRKYKCVYNPNSKEPNINDVMKSLKDAVK
Ga0257106_11189383	3300028194	Marine	GRTFEIEFTDKIIGCPRQYQCIYNPGGSEPNIDDVMKSLRDIAK
Ga0257110_11860714	3300028197	Marine	TFEIEFTDKIIGCPRQYQCIYNPGGSEPNIDDVMKSLRDIAK
Ga0307488_103017535	3300031519	Sackhole Brine	DIANGCPRKYKCVLDPNGKEPSIDSVMESLRSIAK
Ga0307488_103721931	3300031519	Sackhole Brine	QKTFTLDFTDIANGCPRQYKCILNPNGKEPSIDSVMESLRSIAK
Ga0307488_107763052	3300031519	Sackhole Brine	YQGAQKTFTLDFTDLANGCPRKYKCVLDPNGSEPSIDSVMESLRSIAK
Ga0302134_103370861	3300031596	Marine	EVQTSCPRKYKCVYNPNGTEPNIDDVMKSLRDIAK
Ga0308007_101515684	3300031599	Marine	QKTYELEFADIRVGCPKQYRCVVNKNSKIPSIDSVMESLRSIAK
Ga0302132_102717713	3300031605	Marine	QGANKTYEMEFTDIRLGCPKQYKCLHNPNSKEPSIDDVMDSLRSIAK
Ga0302126_102022741	3300031622	Marine	QGAQKTFTLDFTDIANGCPRQYKCVLNPNGKEPSIDSVMESLRSIAK
Ga0302121_100089651	3300031626	Marine	IGCPRKYKCVYNPNSKEPSIDDVMKSLRDIAKXVAV
Ga0302125_101135231	3300031638	Marine	DVQIGCPRKYKCIYNPNSKEPSIDDVMKSLREIAK
Ga0302125_102589122	3300031638	Marine	KTFEMEFTDVQIGCPRKYKCVYNPNSKEPSIDDVMKSLRDIAKXVLV
Ga0307995_11368723	3300031696	Marine	GANKTYEMEFTDIRIGCPKQYKCIHNPNSKEPSIDDVMDSLRSIAK
Ga0308000_103169951	3300031848	Marine	EMEFTDIRIGCPKQYKCIHNPNSKEPSIDDVMDSLRSIAK
Ga0316202_106373611	3300032277	Microbial Mat	YIGAQKTYEMEFTDISIGCPRKYKCKLNPNGKEPSIDQVMESLRSIAE
Ga0316204_110897203	3300032373	Microbial Mat	KTFELEFADIRVGCPKQYKCVLNPNGFEPSIDKVMESLRSIAK
Ga0314858_111794_555_695	3300033742	Sea-Ice Brine	GANKTFELSFQDMSIGCVRKFRCILNPNGKEPSIDSVMESLRSIAK
Ga0314858_146994_3_116	3300033742	Sea-Ice Brine	FTDLANGCPRKYQCVLDPNGKEPSIDSVMDSLRSIAK
Ga0348335_097537_810_935	3300034374	Aqueous	FELSFQDVRIGCVKNFKCELNPNGSEPSIDKVMESLRSIAK
Ga0348336_028795_2535_2654	3300034375	Aqueous	MESTDISIGCPRKYKCKLNPNGKEPNIDQVMESLRSIAK
Ga0348336_165923_518_634	3300034375	Aqueous	SFQDVRIGCVKNFKCELNPNGSEPSIDKVMESLRSIAK

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F070312

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences