NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome Family F070251

Metagenome Family F070251

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F070251
Family Type Metagenome
Number of Sequences 123
Average Sequence Length 49 residues
Representative Sequence MSAPGRPKRELLPLGGKARSAKGADSSAPGRPKRELLPLGGTARSAKGAP
Number of Associated Samples 89
Number of Associated Scaffolds 123

Quality Assessment
Transcriptomic Evidence No
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 71.29 %
% of genes near scaffold ends (potentially truncated) 47.97 %
% of genes from short scaffolds (< 2000 bps) 60.16 %
Associated GOLD sequencing projects 81
AlphaFold2 3D model prediction Yes
3D model pTM-score0.13

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Bacteria (63.415 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil
(13.821 % of family members)
Environment Ontology (ENVO) Unclassified
(46.341 % of family members)
Earth Microbiome Project Ontology (EMPO) Host-associated → Plant → Plant rhizosphere
(43.089 % of family members)


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Multiple Sequence Alignments

Select alignment to view:      

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Fibrous Signal Peptide: No Secondary Structure distribution: α-helix: 0.00%    β-sheet: 0.00%    Coil/Unstructured: 100.00%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  		pTM-score: 0.13
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 123 Family Scaffolds
PF02910Succ_DH_flav_C 3.25
PF00005ABC_tran 2.44
PF01040UbiA 2.44
PF08352oligo_HPY 2.44
PF03167UDG 2.44
PF00528BPD_transp_1 2.44
PF00873ACR_tran 1.63
PF00850Hist_deacetyl 1.63
PF04909Amidohydro_2 1.63
PF08241Methyltransf_11 1.63
PF13193AMP-binding_C 1.63
PF08282Hydrolase_3 1.63
PF13183Fer4_8 1.63
PF12399BCA_ABC_TP_C 1.63
PF00253Ribosomal_S14 1.63
PF02405MlaE 1.63
PF04442CtaG_Cox11 1.63
PF01568Molydop_binding 1.63
PF02769AIRS_C 1.63
PF00582Usp 0.81
PF01493GXGXG 0.81
PF05683Fumerase_C 0.81
PF00155Aminotran_1_2 0.81
PF03480DctP 0.81
PF00137ATP-synt_C 0.81
PF02091tRNA-synt_2e 0.81
PF01850PIN 0.81
PF02272DHHA1 0.81
PF02803Thiolase_C 0.81
PF01202SKI 0.81
PF13416SBP_bac_8 0.81
PF03740PdxJ 0.81
PF11306DUF3108 0.81
PF01553Acyltransferase 0.81
PF01266DAO 0.81
PF13437HlyD_3 0.81
PF11612T2SSJ 0.81
PF03186CobD_Cbib 0.81
PF00561Abhydrolase_1 0.81
PF00497SBP_bac_3 0.81
PF08223PaaX_C 0.81
PF13085Fer2_3 0.81
PF00571CBS 0.81
PF01180DHO_dh 0.81
PF11249DUF3047 0.81
PF00890FAD_binding_2 0.81
PF05987DUF898 0.81
PF02600DsbB 0.81
PF01032FecCD 0.81
PF07021MetW 0.81
PF07311Dodecin 0.81
PF03900Porphobil_deamC 0.81
PF14711Nitr_red_bet_C 0.81
PF02653BPD_transp_2 0.81
PF00206Lyase_1 0.81
PF01264Chorismate_synt 0.81
PF13614AAA_31 0.81
PF13692Glyco_trans_1_4 0.81
PF00672HAMP 0.81
PF08279HTH_11 0.81
PF17147PFOR_II 0.81
PF12911OppC_N 0.81
PF00639Rotamase 0.81
PF07690MFS_1 0.81
PF02874ATP-synt_ab_N 0.81
PF00346Complex1_49kDa 0.81
PF01863YgjP-like 0.81
PF01380SIS 0.81
PF06835LptC 0.81
PF01464SLT 0.81
PF00496SBP_bac_5 0.81
PF05138PaaA_PaaC 0.81
PF13180PDZ_2 0.81
PF00828Ribosomal_L27A 0.81
PF02237BPL_C 0.81
PF07943PBP5_C 0.81
PF08402TOBE_2 0.81
PF04362Iron_traffic 0.81
PF01990ATP-synt_F 0.81
PF01791DeoC 0.81

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 123 Family Scaffolds
COG0123Acetoin utilization deacetylase AcuC or a related deacetylaseSecondary metabolites biosynthesis, transport and catabolism [Q] 3.25
COG0692Uracil-DNA glycosylaseReplication, recombination and repair [L] 2.44
COG1573Uracil-DNA glycosylaseReplication, recombination and repair [L] 2.44
COG3663G:T/U-mismatch repair DNA glycosylaseReplication, recombination and repair [L] 2.44
COG0199Ribosomal protein S14Translation, ribosomal structure and biogenesis [J] 1.63
COG0560Phosphoserine phosphataseAmino acid transport and metabolism [E] 1.63
COG0561Hydroxymethylpyrimidine pyrophosphatase and other HAD family phosphatasesCoenzyme transport and metabolism [H] 1.63
COG0767Permease subunit MlaE of the ABC-type intermembrane phospholipid transporter MlaCell wall/membrane/envelope biogenesis [M] 1.63
COG1877Trehalose-6-phosphate phosphataseCarbohydrate transport and metabolism [G] 1.63
COG2217Cation-transporting P-type ATPaseInorganic ion transport and metabolism [P] 1.63
COG2924Fe-S cluster biosynthesis and repair protein YggXPosttranslational modification, protein turnover, chaperones [O] 1.63
COG3175Cytochrome c oxidase assembly protein Cox11Posttranslational modification, protein turnover, chaperones [O] 1.63
COG3769Mannosyl-3-phosphoglycerate phosphatase YedP/MpgP, HAD superfamilyCarbohydrate transport and metabolism [G] 1.63
COG0042tRNA-dihydrouridine synthaseTranslation, ribosomal structure and biogenesis [J] 0.81
COG0069Glutamate synthase domain 2Amino acid transport and metabolism [E] 0.81
COG0082Chorismate synthaseAmino acid transport and metabolism [E] 0.81
COG0167Dihydroorotate dehydrogenaseNucleotide transport and metabolism [F] 0.81
COG0181Porphobilinogen deaminaseCoenzyme transport and metabolism [H] 0.81
COG0183Acetyl-CoA acetyltransferaseLipid transport and metabolism [I] 0.81
COG0340Biotin-protein ligaseCoenzyme transport and metabolism [H] 0.81
COG0636FoF1-type ATP synthase, membrane subunit c/Archaeal/vacuolar-type H+-ATPase, subunit KEnergy production and conversion [C] 0.81
COG0649NADH:ubiquinone oxidoreductase 49 kD subunit (chain D)Energy production and conversion [C] 0.81
COG0752Glycyl-tRNA synthetase, alpha subunitTranslation, ribosomal structure and biogenesis [J] 0.81
COG0760Peptidyl-prolyl isomerase, parvulin familyPosttranslational modification, protein turnover, chaperones [O] 0.81
COG0854Pyridoxine 5'-phosphate synthase PdxJCoenzyme transport and metabolism [H] 0.81
COG1270Cobalamin biosynthesis protein CobD/CbiBCoenzyme transport and metabolism [H] 0.81
COG1304FMN-dependent dehydrogenase, includes L-lactate dehydrogenase and type II isopentenyl diphosphate isomeraseEnergy production and conversion [C] 0.81
COG1436Archaeal/vacuolar-type H+-ATPase subunit F/Vma7Energy production and conversion [C] 0.81
COG1451UTP pyrophosphatase, metal-dependent hydrolase familyGeneral function prediction only [R] 0.81
COG1495Disulfide bond formation protein DsbBPosttranslational modification, protein turnover, chaperones [O] 0.81
COG1686D-alanyl-D-alanine carboxypeptidaseCell wall/membrane/envelope biogenesis [M] 0.81
COG1727Ribosomal protein L18ETranslation, ribosomal structure and biogenesis [J] 0.81
COG1838Tartrate dehydratase beta subunit/Fumarate hydratase class I, C-terminal domainEnergy production and conversion [C] 0.81
COG2070NAD(P)H-dependent flavin oxidoreductase YrpB, nitropropane dioxygenase familyGeneral function prediction only [R] 0.81
COG3261Ni,Fe-hydrogenase III large subunitEnergy production and conversion [C] 0.81
COG3327DNA-binding transcriptional regulator PaaX (phenylacetic acid degradation)Transcription [K] 0.81
COG3360Flavin-binding protein dodecinGeneral function prediction only [R] 0.81
COG33961,2-phenylacetyl-CoA epoxidase, catalytic subunitSecondary metabolites biosynthesis, transport and catabolism [Q] 0.81
COG4269Uncharacterized membrane protein YjgN, DUF898 familyFunction unknown [S] 0.81

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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
All OrganismsrootAll Organisms63.41 %
UnclassifiedrootN/A36.59 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300003763|Ga0055529_1000432All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Alcaligenaceae → Bordetella → unclassified Bordetella → Bordetella sp. FB-842394Open in IMG/M
3300005218|Ga0068996_10073205All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales723Open in IMG/M
3300005347|Ga0070668_100564653All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria992Open in IMG/M
3300005355|Ga0070671_100146443All Organisms → cellular organisms → Bacteria → Proteobacteria1993Open in IMG/M
3300005355|Ga0070671_100153681All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria1943Open in IMG/M
3300005444|Ga0070694_101958604All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria501Open in IMG/M
3300005466|Ga0070685_11056569Not Available612Open in IMG/M
3300005548|Ga0070665_100058191All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales3875Open in IMG/M
3300005618|Ga0068864_100242893Not Available1669Open in IMG/M
3300005841|Ga0068863_100080907All Organisms → cellular organisms → Bacteria → Proteobacteria3077Open in IMG/M
3300006237|Ga0097621_100113172All Organisms → cellular organisms → Bacteria → Proteobacteria2295Open in IMG/M
3300006237|Ga0097621_100179521All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → unclassified Burkholderiales → Burkholderiales bacterium1829Open in IMG/M
3300006854|Ga0075425_100486827All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales1420Open in IMG/M
3300006871|Ga0075434_102012245Not Available583Open in IMG/M
3300007521|Ga0105044_10022761All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Prosthecomicrobium → Prosthecomicrobium hirschii8297Open in IMG/M
3300009091|Ga0102851_10050117All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria3350Open in IMG/M
3300009091|Ga0102851_10183643All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria1943Open in IMG/M
3300009091|Ga0102851_12257349Not Available620Open in IMG/M
3300009131|Ga0115027_10197298All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria1278Open in IMG/M
3300009131|Ga0115027_10256285All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria1151Open in IMG/M
3300009131|Ga0115027_10695947All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria762Open in IMG/M
3300009131|Ga0115027_11906606Not Available501Open in IMG/M
3300009177|Ga0105248_10440359All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Paraburkholderia → Paraburkholderia caffeinitolerans1468Open in IMG/M
3300009506|Ga0118657_12119519All Organisms → cellular organisms → Bacteria646Open in IMG/M
3300010360|Ga0126372_11057430All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium827Open in IMG/M
3300010403|Ga0134123_12310645All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria601Open in IMG/M
3300013308|Ga0157375_10181735All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD00882255Open in IMG/M
3300014205|Ga0172380_10072831Not Available2840Open in IMG/M
3300014325|Ga0163163_10368494All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium1493Open in IMG/M
3300014326|Ga0157380_12464597All Organisms → cellular organisms → Bacteria586Open in IMG/M
3300014880|Ga0180082_1080725All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium719Open in IMG/M
3300014969|Ga0157376_10018080All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria5394Open in IMG/M
3300015371|Ga0132258_10508973All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria3012Open in IMG/M
3300015371|Ga0132258_10901575All Organisms → cellular organisms → Bacteria → Proteobacteria2232Open in IMG/M
3300015373|Ga0132257_101803073All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → unclassified Burkholderiales → Burkholderiales bacterium786Open in IMG/M
3300016270|Ga0182036_10927487All Organisms → cellular organisms → Bacteria → Proteobacteria715Open in IMG/M
3300018476|Ga0190274_10055266All Organisms → cellular organisms → Bacteria → Proteobacteria2900Open in IMG/M
3300018476|Ga0190274_10142847All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria2004Open in IMG/M
3300018476|Ga0190274_11847802Not Available699Open in IMG/M
3300025272|Ga0209455_1004631All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Alcaligenaceae → Bordetella → unclassified Bordetella → Bordetella sp. FB-84441Open in IMG/M
3300025907|Ga0207645_10760315Not Available659Open in IMG/M
3300025907|Ga0207645_11174309Not Available516Open in IMG/M
3300025925|Ga0207650_10247291All Organisms → cellular organisms → Bacteria → Proteobacteria1443Open in IMG/M
3300025925|Ga0207650_11643891All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria545Open in IMG/M
3300025926|Ga0207659_10324344All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Paraburkholderia → Paraburkholderia caffeinitolerans1271Open in IMG/M
3300025926|Ga0207659_10372857Not Available1189Open in IMG/M
3300025926|Ga0207659_11581497All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria560Open in IMG/M
3300025931|Ga0207644_10075961All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Sutterellaceae2470Open in IMG/M
3300025940|Ga0207691_11225497All Organisms → cellular organisms → Bacteria → Proteobacteria621Open in IMG/M
3300025941|Ga0207711_10022484All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Variovorax → unclassified Variovorax → Variovorax sp. CF0795273Open in IMG/M
3300025973|Ga0210145_1014068Not Available873Open in IMG/M
3300026067|Ga0207678_11098617Not Available704Open in IMG/M
3300026075|Ga0207708_10793661All Organisms → cellular organisms → Bacteria815Open in IMG/M
3300026088|Ga0207641_10022316All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria5210Open in IMG/M
3300026089|Ga0207648_11658277All Organisms → cellular organisms → Bacteria → Proteobacteria601Open in IMG/M
3300026095|Ga0207676_10029851All Organisms → cellular organisms → Bacteria4086Open in IMG/M
3300027877|Ga0209293_10064022All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria1559Open in IMG/M
3300027877|Ga0209293_10751830All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria517Open in IMG/M
3300027885|Ga0209450_10017208All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae4019Open in IMG/M
3300027885|Ga0209450_10137356Not Available1673Open in IMG/M
3300028603|Ga0265293_10372439All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales874Open in IMG/M
3300030336|Ga0247826_10982625All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria670Open in IMG/M
3300031772|Ga0315288_11421023All Organisms → cellular organisms → Bacteria → Proteobacteria579Open in IMG/M
3300031820|Ga0307473_10097758All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Oxalobacteraceae1554Open in IMG/M
3300031873|Ga0315297_11656545Not Available513Open in IMG/M
3300031997|Ga0315278_11378750All Organisms → cellular organisms → Bacteria → Proteobacteria683Open in IMG/M
3300031999|Ga0315274_10116140All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales3452Open in IMG/M
3300032053|Ga0315284_10163938All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales2911Open in IMG/M
3300032156|Ga0315295_10801235Not Available946Open in IMG/M
3300032174|Ga0307470_11299814All Organisms → cellular organisms → Bacteria596Open in IMG/M
3300032177|Ga0315276_10627553All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria1154Open in IMG/M
3300032177|Ga0315276_11301805Not Available763Open in IMG/M
3300032180|Ga0307471_100788285All Organisms → cellular organisms → Bacteria1117Open in IMG/M
3300032180|Ga0307471_102732290Not Available626Open in IMG/M
3300032205|Ga0307472_100325402All Organisms → cellular organisms → Bacteria → Proteobacteria1249Open in IMG/M
3300032256|Ga0315271_11415747All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria600Open in IMG/M
3300032275|Ga0315270_10156769All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria1374Open in IMG/M
3300032276|Ga0316188_10515940Not Available639Open in IMG/M
3300032397|Ga0315287_10137773All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria2809Open in IMG/M
3300032397|Ga0315287_10141932All Organisms → cellular organisms → Bacteria → Proteobacteria2769Open in IMG/M
3300032397|Ga0315287_10222127All Organisms → cellular organisms → Bacteria → Proteobacteria2211Open in IMG/M
3300032516|Ga0315273_10049238All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Chromatiaceae → Thioflavicoccus → Thioflavicoccus mobilis5691Open in IMG/M
3300032782|Ga0335082_10062198All Organisms → cellular organisms → Bacteria3810Open in IMG/M
3300033004|Ga0335084_10114298All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria2806Open in IMG/M
3300033004|Ga0335084_10319061All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria1605Open in IMG/M
3300033004|Ga0335084_10330231All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria1574Open in IMG/M
3300033004|Ga0335084_10427992All Organisms → cellular organisms → Bacteria → Proteobacteria1362Open in IMG/M
3300033408|Ga0316605_10159599All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria1845Open in IMG/M
3300033413|Ga0316603_11432944Not Available655Open in IMG/M
3300033414|Ga0316619_10081711All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria1989Open in IMG/M
3300033418|Ga0316625_100177138Not Available1362Open in IMG/M
3300033418|Ga0316625_100338924Not Available1097Open in IMG/M
3300033418|Ga0316625_101673280All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria611Open in IMG/M
3300033482|Ga0316627_100375985All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria1207Open in IMG/M
3300033482|Ga0316627_101346752Not Available714Open in IMG/M
3300033483|Ga0316629_10810475Not Available720Open in IMG/M
3300033557|Ga0316617_100601169All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria1021Open in IMG/M
3300034115|Ga0364945_0060878All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales1067Open in IMG/M
3300034149|Ga0364929_0052557All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria1238Open in IMG/M
3300034150|Ga0364933_024078All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1468Open in IMG/M
3300034151|Ga0364935_0066399All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Rhodocyclales → Rhodocyclaceae → Aromatoleum → unclassified Aromatoleum → Aromatoleum sp.1072Open in IMG/M


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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
SedimentEnvironmental → Aquatic → Freshwater → Lake → Sediment → Sediment13.82%
SoilEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Soil13.82%
Switchgrass RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere8.13%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere6.50%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere5.69%
WetlandEnvironmental → Aquatic → Freshwater → Sediment → Unclassified → Wetland4.88%
Hardwood Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil4.06%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil3.25%
SedimentEnvironmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment3.25%
Freshwater WetlandsEnvironmental → Aquatic → Freshwater → Wetlands → Unclassified → Freshwater Wetlands2.44%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere2.44%
Arabidopsis RhizosphereHost-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere2.44%
Miscanthus RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere2.44%
Miscanthus RhizosphereHost-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere2.44%
Landfill LeachateEngineered → Solid Waste → Landfill → Unclassified → Unclassified → Landfill Leachate2.44%
Freshwater Lake SedimentEnvironmental → Aquatic → Freshwater → Lentic → Sediment → Freshwater Lake Sediment1.63%
Natural And Restored WetlandsEnvironmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands1.63%
Arabidopsis RootHost-Associated → Plants → Roots → Endophytes → Unclassified → Arabidopsis Root1.63%
Populus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere1.63%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere1.63%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere1.63%
FreshwaterEnvironmental → Aquatic → Freshwater → Ice → Glacial Lake → Freshwater0.81%
Worm BurrowEnvironmental → Aquatic → Marine → Coastal → Sediment → Worm Burrow0.81%
Mangrove SedimentEnvironmental → Aquatic → Marine → Wetlands → Sediment → Mangrove Sediment0.81%
SoilEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Soil0.81%
Terrestrial SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil0.81%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil0.81%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil0.81%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Corn, Switchgrass And Miscanthus Rhizosphere0.81%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil0.81%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural → Soil0.81%
Switchgrass RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere0.81%
Switchgrass RhizosphereHost-Associated → Plants → Roots → Rhizosphere → Soil → Switchgrass Rhizosphere0.81%
RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere0.81%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere0.81%
Corn RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere0.81%

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Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
3300003763Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mCL_r2Host-AssociatedOpen in IMG/M
3300004114Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5EnvironmentalOpen in IMG/M
3300005218Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Sandmound_ThreeSqC_D2EnvironmentalOpen in IMG/M
3300005328Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaGHost-AssociatedOpen in IMG/M
3300005347Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaGHost-AssociatedOpen in IMG/M
3300005355Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaGHost-AssociatedOpen in IMG/M
3300005444Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaGEnvironmentalOpen in IMG/M
3300005459Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2Host-AssociatedOpen in IMG/M
3300005466Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3L metaGEnvironmentalOpen in IMG/M
3300005548Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaGHost-AssociatedOpen in IMG/M
3300005549Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaGEnvironmentalOpen in IMG/M
3300005617Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2Host-AssociatedOpen in IMG/M
3300005618Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2Host-AssociatedOpen in IMG/M
3300005719Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2Host-AssociatedOpen in IMG/M
3300005841Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2Host-AssociatedOpen in IMG/M
3300005844Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2Host-AssociatedOpen in IMG/M
3300006237Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2)Host-AssociatedOpen in IMG/M
3300006358Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2Host-AssociatedOpen in IMG/M
3300006854Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4Host-AssociatedOpen in IMG/M
3300006871Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3Host-AssociatedOpen in IMG/M
3300007521Freshwater microbial communities from Lake Fryxell liftoff mats and glacier meltwater in Antarctica - MAT-01EnvironmentalOpen in IMG/M
3300009091Freshwater wetland microbial communities from Ohio, USA, analyzing the effect of biotic and abiotic controls - Mud 3 Core 4 Depth 3 metaG (Illumina Assembly)EnvironmentalOpen in IMG/M
3300009131Wetland microbial communities from Old Woman Creek Reserve in Ohio, USA - Open_0915_D1EnvironmentalOpen in IMG/M
3300009177Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaGHost-AssociatedOpen in IMG/M
3300009506Mangrove sediment microbial communities from Mai Po Nature Reserve Marshes in Hong Kong, China - Maipo_8EnvironmentalOpen in IMG/M
3300010360Tropical forest soil microbial communities from Panama - MetaG Plot_6EnvironmentalOpen in IMG/M
3300010403Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-3EnvironmentalOpen in IMG/M
3300013308Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaGHost-AssociatedOpen in IMG/M
3300014205Leachate microbial communities from a municipal landfill in Southern Ontario, Canada - Leachate well 162 metaGEngineeredOpen in IMG/M
3300014325Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaGHost-AssociatedOpen in IMG/M
3300014326Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaGHost-AssociatedOpen in IMG/M
3300014880Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLT660_16_10DEnvironmentalOpen in IMG/M
3300014969Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaGHost-AssociatedOpen in IMG/M
3300015371Combined assembly of cpr5 and col0 rhizosphere and soilHost-AssociatedOpen in IMG/M
3300015373Combined assembly of cpr5 rhizosphereHost-AssociatedOpen in IMG/M
3300016270Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080EnvironmentalOpen in IMG/M
3300018476Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 531 TEnvironmentalOpen in IMG/M
3300025272Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mCL_r2 (SPAdes)Host-AssociatedOpen in IMG/M
3300025907Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025925Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025926Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025930Switchgrass rhizosphere bulk soil microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes)EnvironmentalOpen in IMG/M
3300025931Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025940Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025941Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025973Wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Sandmound_TuleC_D2 (SPAdes)EnvironmentalOpen in IMG/M
3300026067Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300026075Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300026088Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300026089Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300026095Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300027877Wetland microbial communities from Old Woman Creek Reserve in Ohio, USA - Mud_0915_D1 (SPAdes)EnvironmentalOpen in IMG/M
3300027885Freshwater lake sediment microbial communities from the University of Notre Dame, USA, for methane emissions studies - LWP11 LW (SPAdes)EnvironmentalOpen in IMG/M
3300028603Leachate microbial communities from a municipal landfill in Southern Ontario, Canada - Leachate well 138REngineeredOpen in IMG/M
3300028782Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_193EnvironmentalOpen in IMG/M
3300030336Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day1EnvironmentalOpen in IMG/M
3300031772Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G11_20EnvironmentalOpen in IMG/M
3300031820Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_515EnvironmentalOpen in IMG/M
3300031873Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G15_0EnvironmentalOpen in IMG/M
3300031997Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G06_0EnvironmentalOpen in IMG/M
3300031999Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G02_20EnvironmentalOpen in IMG/M
3300032004Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3Host-AssociatedOpen in IMG/M
3300032053Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G09_16EnvironmentalOpen in IMG/M
3300032143Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G13_0EnvironmentalOpen in IMG/M
3300032156Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G14_0EnvironmentalOpen in IMG/M
3300032174Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_05EnvironmentalOpen in IMG/M
3300032177Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G05_0EnvironmentalOpen in IMG/M
3300032180Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515EnvironmentalOpen in IMG/M
3300032205Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05EnvironmentalOpen in IMG/M
3300032256Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - C3_topEnvironmentalOpen in IMG/M
3300032275Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - C1_bottomEnvironmentalOpen in IMG/M
3300032276Coastal sediment microbial communities from Maine, United States - Phippsburg worm burrow 1EnvironmentalOpen in IMG/M
3300032397Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G11_0EnvironmentalOpen in IMG/M
3300032516Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G02_0EnvironmentalOpen in IMG/M
3300032782Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.1EnvironmentalOpen in IMG/M
3300033004Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.4EnvironmentalOpen in IMG/M
3300033408Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_soil_day20_noCTEnvironmentalOpen in IMG/M
3300033413Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_soil_day10_noCTEnvironmentalOpen in IMG/M
3300033414Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_M1_C1_D4_BEnvironmentalOpen in IMG/M
3300033418Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_T1_C1_D1_AEnvironmentalOpen in IMG/M
3300033482Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_M2_C1_D1_CEnvironmentalOpen in IMG/M
3300033483Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_May_M1_C1_D1_AEnvironmentalOpen in IMG/M
3300033485Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_T1_C1_D5_AEnvironmentalOpen in IMG/M
3300033487Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_May_M1_C1_D6_AEnvironmentalOpen in IMG/M
3300033557Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_M1_C1_D2_BEnvironmentalOpen in IMG/M
3300034115Sediment microbial communities from East River floodplain, Colorado, United States - 29_s17EnvironmentalOpen in IMG/M
3300034149Sediment microbial communities from East River floodplain, Colorado, United States - 20_j17EnvironmentalOpen in IMG/M
3300034150Sediment microbial communities from East River floodplain, Colorado, United States - 25_j17EnvironmentalOpen in IMG/M
3300034151Sediment microbial communities from East River floodplain, Colorado, United States - 2_s17EnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
Ga0055529_1000432193300003763Arabidopsis RootMSAPGRPKRSFPPWGEGAQRQGGAMSAPGRPKRSFPLGGKARSAKGAI*
Ga0062593_10123789723300004114SoilVTGQGAGLPPGRPNGGSLPPGGKARSAKGAHQSLPPGRPKEGSLPPGGKA
Ga0068996_1007320523300005218Natural And Restored WetlandsMSTPGRPKCELLPLGGTARSAKGIHVCTPGRPKCELLPLGGAARSAKGVHK*
Ga0070676_1042352023300005328Miscanthus RhizosphereMSVPPGRPKERSLPLGGKARSAKGAVISVPPGRPKERSLPLGGKVRSAKGTQ*
Ga0070668_10056465323300005347Switchgrass RhizosphereMSAPGRPKRESVPLGGKARSDEGAKLAPGRPKRESVPLGGKARSAKGAQ*
Ga0070671_10014644333300005355Switchgrass RhizosphereMSAPGRPKRELVPLGGQRSGGSRKRGGPSNSAPGRPKREWVALGGKARSAKGAPQ*
Ga0070671_10015368133300005355Switchgrass RhizosphereMSAPGRPKRELVPLGGKARSAKGAHIGAPGRPKRELVPLGGMARSAKGAV*
Ga0070694_10195860423300005444Corn, Switchgrass And Miscanthus RhizosphereRPKEGSLPPGGKARSAKGAHNSPPPGRPKEGLLPLGGKARSAKGAQNRR*
Ga0068867_10237300513300005459Miscanthus RhizosphereMSLPPGRPKEGSLPLGGKARSAKGAVICLPPGRPKEGSLPLGGKARSAKGAV
Ga0070685_1105656913300005466Switchgrass RhizosphereAQGRPKRELVPLGGTARSAKGAPIRAQGRPKRELVPLGGTARSAKGAP*
Ga0070665_10005819123300005548Switchgrass RhizosphereMSAPGRPKRELRPLGGCGGRKVGAPGRPKRELLPLGGKARSAKGAHQ*
Ga0070704_10068352913300005549Corn, Switchgrass And Miscanthus RhizosphereMSPPSGRPKEGSLPPGGKARSAKGAHSSHPRGRPKEGSLPLGGKARSAKGA
Ga0068859_10049515313300005617Switchgrass RhizosphereMSLPPGRPKEGSLPLGGKARSAKGAHSSLPPGRPKEGSLPLGGKARSAKGAHI
Ga0068859_10146363923300005617Switchgrass RhizosphereMSVPPGRPKERSLPLGGKARSAKGAHICVPPGRQKERSLPLVGKAPSATGAQ*
Ga0068864_10024289313300005618Switchgrass RhizosphereMSAPGRPKRELVPLGGQRSGGSRKRGGPSNSAPGRPKREWVPLGGKARSAKG
Ga0068861_10087324423300005719Switchgrass RhizosphereMSLPPGRPKEGSLPLGGKARSAKGAHIRLPPGRPKEGSLPLGGKARSAKG
Ga0068863_10008090743300005841Switchgrass RhizosphereMSAPGRPKRELLPLGGKARSAKGAHIRAPGRPKGELLPLGGKARSAKGAV*
Ga0068863_10079789813300005841Switchgrass RhizosphereMSLPPGRPKEGSLPLGGKARSAKGAHICLPPGRPKEGSLPLGGKARSAKGAVNAPA*
Ga0068862_10081823713300005844Switchgrass RhizosphereMSPPRGRPKEGSLPLGGKARSAKGAHICPPRGRPKEGSLPLGGKARSAKGA
Ga0097621_10011317243300006237Miscanthus RhizosphereMSAPGRPKRELVPLGGQRSGGSRKRGGPSNSAPGRPKREWVPLGGKARSAKGAPQ*
Ga0097621_10017952113300006237Miscanthus RhizosphereRAPGRPKRELLPLGGKARSAKGAHIRAPGRPKRELLPLGGKARSAKGAV*
Ga0068871_10200773613300006358Miscanthus RhizosphereMSLPPGRPKEGSLPLGGKARSAKGAVICLPPGRPKEGSLPLGGKARSAKGAVICLPPGRPKE
Ga0075425_10048682713300006854Populus RhizosphereMSAQGRPKRELLPLGGKARSAKGVVMSAQGRPKRELLP
Ga0075434_10201224513300006871Populus RhizosphereMSAQGRPKRELLPLGGTARSAKGAHIRAQGRPKRELLPLGGT
Ga0105044_1002276193300007521FreshwaterMSAPGRPKRELLPLWGNGAPRQGGRLNAPGRPNRELLPLGGTARSARGAV*
Ga0102851_1005011753300009091Freshwater WetlandsVSAPGRPKRELLPPGGTARSAKGAHRSAPGRPKRELLPPGGTARSAKGAHR*
Ga0102851_1018364313300009091Freshwater WetlandsMSAPGRPKRESLPLGGTAPGAKGAHMSAPGRPKRESLPLG
Ga0102851_1225734913300009091Freshwater WetlandsMSATGRPERESVPPGGKARSAKGAPSCATGRPERESVPPGG
Ga0115027_1019729813300009131WetlandMSATGRPERESVPLGGTARSAKGAHVSATGRPERESVPLGGTARSAKGAHVSATG
Ga0115027_1025628523300009131WetlandMSAPGRPKRESLPLGGTAPGAKGAHMSAPGRPKRELLPLGGTARSAKGAP*
Ga0115027_1069594733300009131WetlandVSAPGRPKRELLPPGGTARSAKGAHRSAPGRPKRE
Ga0115027_1190660623300009131WetlandMSAQGRPKRELLPRGGTARSAEGVVHRAPGRPKRE
Ga0105248_1044035913300009177Switchgrass RhizosphereMSAPGRPKRELVPLGGKARSAKGAHIGAPGRPKREL
Ga0118657_1211951913300009506Mangrove SedimentMSAPGRPKRESVPRGGTARSAKGGSSMSAPGRPKRE
Ga0126372_1105743013300010360Tropical Forest SoilVMSAQGRPKRELLPLGGKAQSAKGVMSAQGRPKRELLPLGGKAQSAKGVV*
Ga0134123_1231064513300010403Terrestrial SoilMSAPGRPKRELLPLGGQRSGGRRKRGGPSNRAPGRPKRELVPLGGKARSAKGAHQ*
Ga0157375_1018173543300013308Miscanthus RhizosphereMSAPGRPKRELRPLGGCGGRKVRAPGRPKRATALCRGGKARSVKGAH
Ga0172380_1000629593300014205Landfill LeachateMNHPPGRPKDGSLPLGGKSRSDKGAPNSHPPGRPKDGSLPPGGKSRSDKGALLA*
Ga0172380_1007283123300014205Landfill LeachateMRHPPGRPKDGSLPLGGKARSAKGAPLTHPPARPKDGSLPLGGTARSPKGAL*
Ga0163163_1036849433300014325Switchgrass RhizosphereMSAPGRPKRESVPLGGKARSAKGAQRAPGRPKRESVPLGGKARSAKGAQ*
Ga0157380_1246459723300014326Switchgrass RhizosphereSMGPPRGRPKEGPLPLGGKARSAKGAHICPPRGRPKEGPLPPGGKARSAKGAQ*
Ga0180082_108072523300014880SoilMSAPGRPKRELLPLGGKARSAKGADSSAPGRPKRELLPLGGTARSAKGAP*
Ga0157376_1001808013300014969Miscanthus RhizosphereMSAPGRPKRELVPLGGQRSGGSRKRGGPSNSAPGRPKREWVPLGGKARSAKGA
Ga0132258_1050897323300015371Arabidopsis RhizosphereMSARGRPKRELLPLGGTPHSAKGPHPSAPGRPKPETAVRLGGKARSAKDAP*
Ga0132258_1090157543300015371Arabidopsis RhizosphereMSAQGRPNRESLPLGGKARSAKGAPIRAPGRPERESLPLGGKARSAKGAA*
Ga0132257_10180307313300015373Arabidopsis RhizosphereIRAPGRPKRELLPLGGKARSAKGAPIRAPGRPERESLPLGGKARSAKGAA*
Ga0182036_1092748723300016270SoilHERAGPPQARLLPLRGDGAKRQGGLMSAQGRPKRELLPLGGTAQSAKGAP
Ga0190274_1005526623300018476SoilMSAPGRPKRELLPLRGEGAQRQGGTMSAPGRPKRELLPLGGKARSAKGAP
Ga0190274_1014284723300018476SoilMSAPGRPKRELLPLGGKARSAKGVLIRAPGRPKRGTALCLAGKARSAKGAPMNGAR
Ga0190274_1184780213300018476SoilMSAPGRPKRELLPLGGKARSAKGAHISAPGRPKRELVPLGGKARSAK
Ga0209455_100463123300025272Arabidopsis RootMSAPGRPKRSFPPWGEGAQRQGGAMSAPGRPKRSFPLGGKARSAKGAI
Ga0207645_1076031513300025907Miscanthus RhizosphereMSVPPGRPKERSLPLGGKARSAKGAHICVPPGRPKERSLPLGGKARSAKGALI
Ga0207645_1117430913300025907Miscanthus RhizosphereGRPKRELVPLGGTARSAKGAPIRAQGRPKRELVPLGGTARSAKGAP
Ga0207650_1024729123300025925Switchgrass RhizosphereMSAPGRPKRELRPLGGCGGRKVGAPGRPKRELLPLGGKARSAKGAHK
Ga0207650_1164389123300025925Switchgrass RhizosphereVSAQGRPKRELVPLGGTARSAKGAPIRAQGRPKRELVPLG
Ga0207659_1032434413300025926Miscanthus RhizosphereMSAPGRPKRELVPLGGKARSAKGAHIGAPGRPKRELVPLGGKARSAKGAHIGA
Ga0207659_1037285733300025926Miscanthus RhizosphereMSAPGRPKRELRPLGGCGGRKVGAPGRPKRELLPLGGKARSAKGAHQ
Ga0207659_1138788613300025926Miscanthus RhizospherePRGSPKEGSLPRGGMVRSAEGAHLCPPHGRPKEGSLPRGGMARSAQGAS
Ga0207659_1158149723300025926Miscanthus RhizosphereVSAQGRPKRELVPLGGTARSAKGAPIRAQGRPKRELVPLGGTARSAKG
Ga0207701_1024501713300025930Corn, Switchgrass And Miscanthus RhizosphereKEGSLPLGGKARSAKGAHMSPPRGRPKEGSLPLGGKARSAKGAHISPPRGHPNGVRT
Ga0207644_1007596123300025931Switchgrass RhizosphereMSAPGRPKRELVPLGGQRSGGSRKRGGPSNSAPGRPKREWVALGGKARSAKGAPQ
Ga0207691_1122549723300025940Miscanthus RhizosphereMSAPGRPKRESVPLGGKARSDEGAKLAPGRPKRESVPLGGKARSAKGAQ
Ga0207711_1002248423300025941Switchgrass RhizosphereMSAPGRPKRELVPLGGKARSAKGAHIGAPGRPKRELLPLGGMARSAKGAV
Ga0210145_101406813300025973Natural And Restored WetlandsMSAKGRPERELLPHGGTARSAKGAPVSAKGRPERELLPHGGTARSAKGAPV
Ga0207678_1109861713300026067Corn RhizosphereVVSAQGRPKRELVPLGGTARSAKGAPIRAQGRPKRELVPLGGTARSAKGAP
Ga0207708_1079366113300026075Corn, Switchgrass And Miscanthus RhizospherePGPGARGSGMSAPGRPKRELVPLGGKARSAKGAHIGAPGRPKRELVPLGGMARSAKGAV
Ga0207641_1002231643300026088Switchgrass RhizosphereMSAPGRPKRELLPLGGKARSAKGAHIRAPGRPKGELLPLGGKARSAKGAV
Ga0207641_1087949223300026088Switchgrass RhizosphereMSLPPGRPKEGSLPLGGKARSAKGAHHSLPPGRPKEGSLPPGGKARSAKGARVTFNA
Ga0207648_1104701613300026089Miscanthus RhizosphereGRPKEGSLPLGGKARSAKGAHICLPPGRPKEGSLPLGGKARSAKGAHK
Ga0207648_1165827723300026089Miscanthus RhizosphereRELVPLGGKARSAKGAHIGAPGRPKRELVPLGGMARSAKGAV
Ga0207676_1002985143300026095Switchgrass RhizosphereMSAPGRPKRELLPRGGKARSAKGAPIRAPGRPKRELLPRGGKARSANGAHISDAGPMGNSRTC
Ga0209293_1006402213300027877WetlandVSAPGRPKRELLPPGGTARSAKGAHRSAPGRLKRELLPPGGT
Ga0209293_1075183023300027877WetlandMSAPGRPKRESVPLGGTARSAKGVLVSAPGRPKRECSPSGGG
Ga0209450_1001720823300027885Freshwater Lake SedimentVSAPGRPEREPLPLGGNGAQRRGGNVSAPGRPKRELLPLGGTARSAEGAP
Ga0209450_1013735613300027885Freshwater Lake SedimentMSAPGRPKREWLPLGGTARSAQGVLMSAPGRPKREWLPLGGTARSAQGVLM
Ga0265293_1037243923300028603Landfill LeachateMSAPGRPKRESPHGGAARSALGGAMSAPGRPKRESPHGG
Ga0307306_1011064023300028782SoilMSLPPGRPKEGSLPLGGKARSAKGAHICPPPGRPKEDSLPLGGKACSAKGAPP
Ga0247826_1098262523300030336SoilVSAPGRPKREIPHGGTARSAKGADMSAPGRPKREIPQ
Ga0315288_1142102323300031772SedimentMSALGRPKRELLPLGGKARSAKGALMSAPGRPKRELLPLGGKARSAKGAPAMPSA
Ga0307473_1009775813300031820Hardwood Forest SoilMSAQGRPKRESLPLGGKAPSAKGARIRAQGRPKREL
Ga0315297_1165654523300031873SedimentMSTPGRPKCELLPLGGTARSAKGVLMATPGRPKCELLPLGGTARSAKGVHK
Ga0315278_1137875013300031997SedimentMSAPGRPKRELLPLGGKARSAKGALMSAPSRPKRELLPLG
Ga0315274_1011614063300031999SedimentMSAPGRPKRELLPLGGKALCAKGVPMSAPGRPKRELLPLGGKALCAKGVPR
Ga0307414_1148149913300032004RhizosphereMSTPHGRPKEGSLPSGDSAQREGAYMSTPHGRPKEGSLPLGGTARSAKGAPI
Ga0315284_1016393833300032053SedimentRQDTVECYMSAPGRPKRELLPLGGKARSAKGALMSAPGRPKRELLPLGGKARSAKGAPAMPSA
Ga0315292_1086165313300032143SedimentMSLPPGRPKEGSLPLGGKARSAKGAHSCLPPGRPKEGSLPHGGKAR
Ga0315295_1080123513300032156SedimentMMSAPGRPKRELLPLGGTARSAKGAHMSAPGRPKRKLLPLGGTARS
Ga0307470_1129981413300032174Hardwood Forest SoilMSAPGRPKRELLPLGGKARSAKGAPIRATGRPNRGTVVRLGGKARSAKGAHQ
Ga0315276_1062755323300032177SedimentMSAPGRPKRELLPLGGKARSAKGALMSAPGRPKRELLPLGGKARSAKGAPAMPSA
Ga0315276_1130180513300032177SedimentGRPKREWLPLGGKARSAKGAPMSAPGRPKREWLPLGGKARSAKGALTGS
Ga0307471_10078828513300032180Hardwood Forest SoilMSAQGRPKRESLPLRGKARSAKGAHIRAQGRPKRESLPLRG
Ga0307471_10273229013300032180Hardwood Forest SoilMSVQGRPKRELLPLGGTARSAKGAHIRVQGRPKRELLPLGGTARSAKGVHQ
Ga0307472_10032540223300032205Hardwood Forest SoilMSAQGRPKRELLPLGRTARSAKGAHIRAQNRPKRELLPLGRTARSAKGAQ
Ga0315271_1066904013300032256SedimentVSPPRGRPKEGSLPLGGTARSAKGALTTPPRGRPKEGSLPLGVTARSAK
Ga0315271_1141574723300032256SedimentMSAPGRPKRELLSRGGTARSAKGAHTSAPGRPKREH
Ga0315270_1015676923300032275SedimentMSAPGRPKRELLPLGGKARSAKGALMSAPGRPKRELLPLGGKARSAKGAPM
Ga0316188_1051594023300032276Worm BurrowMSAPGRPKRELLPRGGTARSAEGAVIRAPGRPKRELLPRGGTARSAEGASMSA
Ga0315287_10008867103300032397SedimentMSLPPGRPKEGDVPLGGTARSAREHISLPPGRPKEGDVPLGGTARSAREHISLPPGRHKDVHARIDPPWSS
Ga0315287_1013777323300032397SedimentMSTPGRPKCESLPLGGTARSAKGVHIRTPGRPKCESLPLGGAVRSAKGVHK
Ga0315287_1014193223300032397SedimentMSAPGRPKREWLPLGGKARSAKGAPMSAPGRPKREWLPLGGKARSAKGALTGS
Ga0315287_1022212733300032397SedimentMSAPGRPKREWLPLGGTARSAKGVHQWSAPGRPKREWLPLGGTARSAKGVHQ
Ga0315273_1004923873300032516SedimentMSAPGRPKRELLPLGGKALCAKGVPMSAPGRPKRELLPLGGK
Ga0335082_1006219833300032782SoilMSAKGRPERELLPSGETARSAKGAPLSAMGRPERELLPPRGTARSAKGEPLSAMGR
Ga0335084_1011429853300033004SoilMSAKGRPERESLPLGGTARSAEGAHIRAKGRPERESLPLGGTARSA
Ga0335084_1031906143300033004SoilMSAKGRFERESLPLGGNARSAEGKPSAKGRPERESPPLGATARSAEGAPLGATP
Ga0335084_1033023113300033004SoilMSAKGRPERELLPSGETARSAKGAPLSAMGRPERELLPPGGTARSAKGEPLSAMGG
Ga0335084_1042799233300033004SoilIRAKGRPERESLPLGGTARSAAGAHIRAKGRPEREGAP
Ga0316605_1015959923300033408SoilVSAPGRPKRELLPPGGTARSAKGAHRSAPGRPKRELLPPGGTARSAKGAHR
Ga0316603_1143294423300033413SoilMSPPGRPKGELLPLEGTARSAKGAPVSTPGRPKCELLPPRGTARSARGR
Ga0316619_1008171133300033414SoilVSAPGRPKRELPPPGGTARSAKGAHRSAPGRPKRELLPPGGTARSAKGAHR
Ga0316625_10017713833300033418SoilKGRPEGEFVPLGGKARSAKGAPQMSPKGRPEGEFVPLGGKARSAKGAHQ
Ga0316625_10033892413300033418SoilMSPPGRPKGEGVPLGGKARSAQGAVSPPGRPKGEGVPLGGKARSA
Ga0316625_10167328013300033418SoilVSAKGRPEREPFPLGGRARSAKGAHECAKGRPEREPFPLGGRARSAKGAHECATG
Ga0316627_10037598533300033482SoilMSAPGRPKRELLPLGGTARSAKGAQSSAPGRPKGEL
Ga0316627_10134675223300033482SoilMSAKGRPERESVPLGGKARSAKGAHSCAKGRPERESVPLGGKAR
Ga0316629_1081047513300033483SoilMICIKGSAVSAKGRPERELLPLGGTARSAKGAPVSAKGRPERE
Ga0316626_1081362913300033485SoilMSATGRPERESVPLGGKARSAKGAPSCATGRPERESVP
Ga0316630_1003208943300033487SoilMSAPGRPKRESVPLGGTARSAKGAPSSAPGRFAGTQP
Ga0316617_10060116913300033557SoilVSAKGRPEREPFPLGGRARSAKGAHECAKGRPEREPFPLG
Ga0364945_0060878_221_3913300034115SedimentMSAPGRPKRESLPLGGQRSGGSRKRGGPSNSAPGRPKRGTAVRLAGKARSAKGAHQ
Ga0364929_0052557_1045_11973300034149SedimentMSAPGRPKRELLPLGGKARSAKGADSSAPGRPKRELLPLGGTARSAKGAQ
Ga0364933_024078_774_9293300034150SedimentMSAPGRPKRELLPLGGKARSAKGAMSPPGISRRGTAVRLGGTVRSAKVAYS
Ga0364935_0066399_2_1603300034151SedimentMSAPGRPKGELLPLGGKARSAKGAHIRAPGRPKGELLPLGGKARSAKGAPVSM

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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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