Metagenome / Metatranscriptome Family F070040

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F070040
Family Type	Metagenome / Metatranscriptome
Number of Sequences	123
Average Sequence Length	59 residues
Representative Sequence	MPRTTRRKRVLWTADELKTLRKLAGKEGVRKIARQLKRSEAAVRFKAWQKRIKLAVRKAKSK
Number of Associated Samples	81
Number of Associated Scaffolds	123

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	89.43 %
% of genes near scaffold ends (potentially truncated)	18.70 %
% of genes from short scaffolds (< 2000 bps)	75.61 %
Associated GOLD sequencing projects	77
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.54

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (63.415 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil (26.016 % of family members)
Environment Ontology (ENVO)	Unclassified (27.642 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (57.724 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 31.11% β-sheet: 4.44% Coil/Unstructured: 64.44%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.54
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.54
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 123 Family Scaffolds
PF01648	ACPS	16.26
PF00561	Abhydrolase_1	7.32
PF04237	YjbR	4.88
PF12728	HTH_17	2.44
PF02265	S1-P1_nuclease	2.44
PF13417	GST_N_3	2.44
PF00873	ACR_tran	1.63
PF03023	MurJ	1.63
PF04138	GtrA	0.81
PF00892	EamA	0.81
PF06067	DUF932	0.81
PF00076	RRM_1	0.81
PF03965	Penicillinase_R	0.81
PF01066	CDP-OH_P_transf	0.81
PF13533	Biotin_lipoyl_2	0.81
PF01012	ETF	0.81
PF13899	Thioredoxin_7	0.81
PF00857	Isochorismatase	0.81
PF02894	GFO_IDH_MocA_C	0.81
PF03807	F420_oxidored	0.81
PF04002	RadC	0.81
PF00459	Inositol_P	0.81
PF08808	RES	0.81

COG ID	Name	Functional Category	% Frequency in 123 Family Scaffolds
COG2315	Predicted DNA-binding protein with Ã¢â‚¬Ëœdouble-wingÃ¢â‚¬â„¢ structural motif, MmcQ/YjbR family	Transcription [K]	4.88
COG0534	Na+-driven multidrug efflux pump, DinF/NorM/MATE family	Defense mechanisms [V]	1.63
COG0728	Lipid II flippase MurJ/MviN (peptidoglycan biosynthesis)	Cell wall/membrane/envelope biogenesis [M]	1.63
COG2244	Membrane protein involved in the export of O-antigen and teichoic acid	Cell wall/membrane/envelope biogenesis [M]	1.63
COG0558	Phosphatidylglycerophosphate synthase	Lipid transport and metabolism [I]	0.81
COG0673	Predicted dehydrogenase	General function prediction only [R]	0.81
COG1183	Phosphatidylserine synthase	Lipid transport and metabolism [I]	0.81
COG1335	Nicotinamidase-related amidase	Coenzyme transport and metabolism [H]	0.81
COG1535	Isochorismate hydrolase	Secondary metabolites biosynthesis, transport and catabolism [Q]	0.81
COG1846	DNA-binding transcriptional regulator, MarR family	Transcription [K]	0.81
COG2003	DNA repair protein RadC, contains a helix-hairpin-helix DNA-binding motif	Replication, recombination and repair [L]	0.81
COG2025	Electron transfer flavoprotein, alpha subunit FixB	Energy production and conversion [C]	0.81
COG2086	Electron transfer flavoprotein, alpha and beta subunits	Energy production and conversion [C]	0.81
COG3682	Transcriptional regulator, CopY/TcrY family	Transcription [K]	0.81
COG5050	sn-1,2-diacylglycerol ethanolamine- and cholinephosphotranferases	Lipid transport and metabolism [I]	0.81
COG5654	Predicted toxin component of a toxin-antitoxin system, contains RES domain	Defense mechanisms [V]	0.81

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	63.41 %
Unclassified	root	N/A	36.59 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	63.41 %
Unclassified	root	N/A	36.59 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	63.41 %
Unclassified	root	N/A	36.59 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	36.59 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	32.52 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	0.81 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.81 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	36.59 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	8.13 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	1.63 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.81 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.81 %
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	0.81 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	36.59 %
Nevskiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales	2.44 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1.63 %
unclassified Verrucomicrobia	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia	0.81 %
Enterobacterales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales	0.81 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.81 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.81 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	36.59 %
Sinobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Sinobacteraceae	2.44 %
unclassified Deltaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria	1.63 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	0.81 %
Enterobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae	0.81 %
Beijerinckiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae	0.81 %
Micromonosporales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales	0.81 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	36.59 %
Solimonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Sinobacteraceae → Solimonas	1.63 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1.63 %
Methylovirgula	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → Methylovirgula	0.81 %
Escherichia	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae → Escherichia	0.81 %
Micromonosporaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae	0.81 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	0.81 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	36.59 %
Solimonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Sinobacteraceae → Solimonas	1.63 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1.63 %
Escherichia coli	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae → Escherichia → Escherichia coli	0.81 %
unclassified Methylovirgula	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → Methylovirgula → unclassified Methylovirgula	0.81 %
Micromonosporaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae	0.81 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	0.81 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	36.59 %
Solimonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Sinobacteraceae → Solimonas	1.63 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1.63 %
Methylovirgula sp. 4M-Z18	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → Methylovirgula → unclassified Methylovirgula → Methylovirgula sp. 4M-Z18	0.81 %
Escherichia coli	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae → Escherichia → Escherichia coli	0.81 %
Micromonosporaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae	0.81 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	0.81 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2029527000\|GBANfinal_FHNL2OP03P8VIF	Not Available	500	Open in IMG/M
3300001661\|JGI12053J15887_10353132	Not Available	711	Open in IMG/M
3300002245\|JGIcombinedJ26739_101277767	Not Available	625	Open in IMG/M
3300004092\|Ga0062389_103353404	All Organisms → cellular organisms → Bacteria	600	Open in IMG/M
3300004152\|Ga0062386_100245625	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1417	Open in IMG/M
3300005524\|Ga0070737_10000182	All Organisms → cellular organisms → Bacteria → Proteobacteria	153547	Open in IMG/M
3300005529\|Ga0070741_11368658	Not Available	589	Open in IMG/M
3300005534\|Ga0070735_10333217	All Organisms → cellular organisms → Bacteria	912	Open in IMG/M
3300005534\|Ga0070735_10913187	All Organisms → cellular organisms → Bacteria	515	Open in IMG/M
3300005538\|Ga0070731_10967400	Not Available	564	Open in IMG/M
3300005591\|Ga0070761_10127916	All Organisms → cellular organisms → Bacteria	1478	Open in IMG/M
3300005591\|Ga0070761_10344582	All Organisms → cellular organisms → Bacteria	902	Open in IMG/M
3300005591\|Ga0070761_10434668	All Organisms → cellular organisms → Bacteria → Proteobacteria	804	Open in IMG/M
3300005602\|Ga0070762_10234555	All Organisms → cellular organisms → Bacteria	1135	Open in IMG/M
3300005610\|Ga0070763_10733577	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae → Escherichia → Escherichia coli	580	Open in IMG/M
3300005712\|Ga0070764_10287866	All Organisms → cellular organisms → Bacteria → Proteobacteria	945	Open in IMG/M
3300005764\|Ga0066903_103029912	Not Available	910	Open in IMG/M
3300005921\|Ga0070766_11026025	Not Available	568	Open in IMG/M
3300006638\|Ga0075522_10007850	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	7319	Open in IMG/M
3300010361\|Ga0126378_12157046	Not Available	635	Open in IMG/M
3300010371\|Ga0134125_11020689	Not Available	907	Open in IMG/M
3300010396\|Ga0134126_10152506	All Organisms → cellular organisms → Bacteria → Proteobacteria	2798	Open in IMG/M
3300011120\|Ga0150983_13780011	Not Available	516	Open in IMG/M
3300014493\|Ga0182016_10305702	All Organisms → cellular organisms → Bacteria → Proteobacteria	971	Open in IMG/M
3300014499\|Ga0182012_10129057	All Organisms → cellular organisms → Bacteria → Proteobacteria	1853	Open in IMG/M
3300016422\|Ga0182039_11959010	Not Available	538	Open in IMG/M
3300017959\|Ga0187779_10216767	All Organisms → cellular organisms → Bacteria	1202	Open in IMG/M
3300017959\|Ga0187779_10306274	All Organisms → cellular organisms → Bacteria	1018	Open in IMG/M
3300017973\|Ga0187780_10188197	All Organisms → cellular organisms → Bacteria	1437	Open in IMG/M
3300018060\|Ga0187765_10184879	All Organisms → cellular organisms → Bacteria	1196	Open in IMG/M
3300018060\|Ga0187765_10245834	All Organisms → cellular organisms → Bacteria	1052	Open in IMG/M
3300018085\|Ga0187772_10647163	Not Available	755	Open in IMG/M
3300018085\|Ga0187772_11295704	Not Available	539	Open in IMG/M
3300020582\|Ga0210395_10032241	All Organisms → cellular organisms → Bacteria → Proteobacteria	3843	Open in IMG/M
3300020582\|Ga0210395_10330511	All Organisms → cellular organisms → Bacteria	1146	Open in IMG/M
3300021170\|Ga0210400_10016470	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Sinobacteraceae	5820	Open in IMG/M
3300021170\|Ga0210400_10837135	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	753	Open in IMG/M
3300021181\|Ga0210388_11158224	Not Available	658	Open in IMG/M
3300021402\|Ga0210385_10080688	All Organisms → cellular organisms → Bacteria	2233	Open in IMG/M
3300021402\|Ga0210385_10630903	Not Available	818	Open in IMG/M
3300021403\|Ga0210397_10431422	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	989	Open in IMG/M
3300021404\|Ga0210389_10310178	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1237	Open in IMG/M
3300021405\|Ga0210387_10213177	All Organisms → cellular organisms → Bacteria	1679	Open in IMG/M
3300021405\|Ga0210387_10234701	All Organisms → cellular organisms → Bacteria	1601	Open in IMG/M
3300021407\|Ga0210383_10867775	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae	770	Open in IMG/M
3300021433\|Ga0210391_10000298	All Organisms → cellular organisms → Bacteria → Proteobacteria	56965	Open in IMG/M
3300021433\|Ga0210391_10019430	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	5480	Open in IMG/M
3300021433\|Ga0210391_11396535	Not Available	538	Open in IMG/M
3300021474\|Ga0210390_10038326	All Organisms → cellular organisms → Bacteria → Proteobacteria	3916	Open in IMG/M
3300021477\|Ga0210398_10231731	All Organisms → cellular organisms → Bacteria → Proteobacteria	1505	Open in IMG/M
3300021560\|Ga0126371_10038912	All Organisms → cellular organisms → Bacteria → Proteobacteria	4496	Open in IMG/M
3300021560\|Ga0126371_11537915	Not Available	793	Open in IMG/M
3300025679\|Ga0207933_1082487	All Organisms → cellular organisms → Bacteria	1044	Open in IMG/M
3300025862\|Ga0209483_1084782	All Organisms → cellular organisms → Bacteria	1413	Open in IMG/M
3300026118\|Ga0207675_100266453	All Organisms → cellular organisms → Bacteria → Proteobacteria	1661	Open in IMG/M
3300027853\|Ga0209274_10319972	All Organisms → cellular organisms → Bacteria → Proteobacteria	798	Open in IMG/M
3300027869\|Ga0209579_10491052	Not Available	666	Open in IMG/M
3300027895\|Ga0209624_10329282	All Organisms → cellular organisms → Bacteria	1018	Open in IMG/M
3300027895\|Ga0209624_10780247	Not Available	628	Open in IMG/M
3300027908\|Ga0209006_10257089	All Organisms → cellular organisms → Bacteria → Proteobacteria	1501	Open in IMG/M
3300027908\|Ga0209006_11388973	Not Available	538	Open in IMG/M
3300027965\|Ga0209062_1001456	All Organisms → cellular organisms → Bacteria → Proteobacteria	41632	Open in IMG/M
3300027986\|Ga0209168_10161317	Not Available	1133	Open in IMG/M
3300028800\|Ga0265338_10082703	All Organisms → cellular organisms → Bacteria	2687	Open in IMG/M
3300029701\|Ga0222748_1129213	Not Available	516	Open in IMG/M
3300029882\|Ga0311368_11153458	Not Available	500	Open in IMG/M
3300030626\|Ga0210291_11783859	All Organisms → cellular organisms → Bacteria	648	Open in IMG/M
3300030741\|Ga0265459_11864071	All Organisms → cellular organisms → Bacteria	712	Open in IMG/M
3300030863\|Ga0265766_1023592	Not Available	519	Open in IMG/M
3300031057\|Ga0170834_102375967	Not Available	520	Open in IMG/M
3300031057\|Ga0170834_104136775	All Organisms → cellular organisms → Bacteria	702	Open in IMG/M
3300031064\|Ga0102767_10731263	All Organisms → cellular organisms → Bacteria	652	Open in IMG/M
3300031231\|Ga0170824_113479249	Not Available	851	Open in IMG/M
3300031231\|Ga0170824_116089300	Not Available	651	Open in IMG/M
3300031236\|Ga0302324_101362881	All Organisms → cellular organisms → Bacteria → Proteobacteria	932	Open in IMG/M
3300031247\|Ga0265340_10045538	All Organisms → cellular organisms → Bacteria	2142	Open in IMG/M
3300031524\|Ga0302320_11947244	Not Available	553	Open in IMG/M
3300031544\|Ga0318534_10615135	Not Available	617	Open in IMG/M
3300031546\|Ga0318538_10189614	All Organisms → cellular organisms → Bacteria	1096	Open in IMG/M
3300031682\|Ga0318560_10212513	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1035	Open in IMG/M
3300031682\|Ga0318560_10824277	Not Available	501	Open in IMG/M
3300031708\|Ga0310686_114650307	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Sinobacteraceae → Solimonas	1771	Open in IMG/M
3300031708\|Ga0310686_117039722	Not Available	661	Open in IMG/M
3300031712\|Ga0265342_10628810	Not Available	540	Open in IMG/M
3300031910\|Ga0306923_10705569	All Organisms → cellular organisms → Bacteria	1123	Open in IMG/M
3300032051\|Ga0318532_10187328	Not Available	735	Open in IMG/M
3300032515\|Ga0348332_10961074	Not Available	533	Open in IMG/M
3300032515\|Ga0348332_11326920	Not Available	685	Open in IMG/M
3300032515\|Ga0348332_11893783	Not Available	593	Open in IMG/M
3300032515\|Ga0348332_13537672	Not Available	512	Open in IMG/M
3300032770\|Ga0335085_10000027	All Organisms → cellular organisms → Bacteria → Proteobacteria	533536	Open in IMG/M
3300032770\|Ga0335085_10054332	All Organisms → cellular organisms → Bacteria → Proteobacteria	5390	Open in IMG/M
3300032770\|Ga0335085_11661065	Not Available	659	Open in IMG/M
3300032783\|Ga0335079_10004259	All Organisms → cellular organisms → Bacteria → Proteobacteria	16450	Open in IMG/M
3300032783\|Ga0335079_10737795	All Organisms → cellular organisms → Bacteria	1025	Open in IMG/M
3300032805\|Ga0335078_11519766	Not Available	747	Open in IMG/M
3300032828\|Ga0335080_10327895	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1656	Open in IMG/M
3300032828\|Ga0335080_10805381	All Organisms → cellular organisms → Bacteria	971	Open in IMG/M
3300032892\|Ga0335081_10911737	All Organisms → cellular organisms → Bacteria	1035	Open in IMG/M
3300032893\|Ga0335069_10604012	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Sinobacteraceae → Solimonas	1258	Open in IMG/M
3300032893\|Ga0335069_10895259	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → Methylovirgula → unclassified Methylovirgula → Methylovirgula sp. 4M-Z18	992	Open in IMG/M
3300032895\|Ga0335074_10000298	All Organisms → cellular organisms → Bacteria → Proteobacteria	74965	Open in IMG/M
3300032895\|Ga0335074_10000397	All Organisms → cellular organisms → Bacteria → Proteobacteria	64080	Open in IMG/M
3300032895\|Ga0335074_10000897	All Organisms → cellular organisms → Bacteria → Proteobacteria	40637	Open in IMG/M
3300032895\|Ga0335074_10014103	All Organisms → cellular organisms → Bacteria → Proteobacteria	11220	Open in IMG/M
3300032895\|Ga0335074_10018356	All Organisms → cellular organisms → Bacteria → Proteobacteria	9868	Open in IMG/M
3300032895\|Ga0335074_10024281	All Organisms → cellular organisms → Bacteria → Proteobacteria	8550	Open in IMG/M
3300032895\|Ga0335074_10047125	All Organisms → cellular organisms → Bacteria → Proteobacteria	5956	Open in IMG/M
3300032895\|Ga0335074_10078750	All Organisms → cellular organisms → Bacteria	4418	Open in IMG/M
3300032895\|Ga0335074_10117810	All Organisms → cellular organisms → Bacteria	3450	Open in IMG/M
3300032895\|Ga0335074_10248508	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	2096	Open in IMG/M
3300032895\|Ga0335074_10677844	Not Available	1001	Open in IMG/M
3300032896\|Ga0335075_10007818	All Organisms → cellular organisms → Bacteria	16416	Open in IMG/M
3300032896\|Ga0335075_10031072	All Organisms → cellular organisms → Bacteria → Proteobacteria	7714	Open in IMG/M
3300032896\|Ga0335075_10736846	All Organisms → cellular organisms → Bacteria	939	Open in IMG/M
3300032898\|Ga0335072_11623352	Not Available	544	Open in IMG/M
3300032954\|Ga0335083_10630774	Not Available	879	Open in IMG/M
3300033134\|Ga0335073_10923682	All Organisms → cellular organisms → Bacteria	915	Open in IMG/M
3300033134\|Ga0335073_11843296	Not Available	562	Open in IMG/M
3300033158\|Ga0335077_10108663	Not Available	3243	Open in IMG/M
3300033158\|Ga0335077_10184131	All Organisms → cellular organisms → Bacteria	2364	Open in IMG/M
3300033158\|Ga0335077_10509579	All Organisms → cellular organisms → Bacteria	1271	Open in IMG/M
3300033977\|Ga0314861_0458325	Not Available	551	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	95.94%
Host-Associated	Host-Associated	3.25%
Engineered	Engineered	0.81%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	94.31%
Plants	Host-Associated → Plants	3.25%
Aquatic	Environmental → Aquatic	1.63%
Solid Waste	Engineered → Solid Waste	0.81%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	88.62%
Plant Litter	Environmental → Terrestrial → Plant Litter	3.25%
Peat	Environmental → Terrestrial → Peat	2.44%
Rhizosphere	Host-Associated → Plants → Rhizosphere	2.44%
Freshwater	Environmental → Aquatic → Freshwater	1.63%
Rhizoplane	Host-Associated → Plants → Rhizoplane	0.81%
Grass	Engineered → Solid Waste → Grass	0.81%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	41.46%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	34.15%
Loam	Environmental → Terrestrial → Soil → Loam	13.01%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified	3.25%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	2.44%
Soil	Host-Associated → Plants → Rhizosphere → Soil	2.44%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	1.63%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	0.81%
Composting	Engineered → Solid Waste → Grass → Composting	0.81%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	32.52%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	26.02%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	13.01%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	13.01%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified	3.25%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	2.44%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	2.44%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	2.44%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	1.63%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	1.63%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	0.81%
Bioreactor	Engineered → Solid Waste → Grass → Composting → Bioreactor	0.81%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	26.02%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	21.14%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	6.50%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	6.50%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	5.69%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	5.69%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	3.25%
Plant Litter	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Plant Litter	3.25%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	2.44%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	2.44%
Arctic Peat Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil	2.44%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere	2.44%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	1.63%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	1.63%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	1.63%
Bog	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Bog	1.63%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	1.63%
Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Peatland	0.81%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	0.81%
Bog	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog	0.81%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.81%
Green-Waste Compost	Engineered → Solid Waste → Grass → Composting → Bioreactor → Green-Waste Compost	0.81%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2029527000	Green-waste compost microbial community at University of California, Davis, USA, from solid state bioreactor - Inoculum 16S MiniPCR	Engineered	Open in IMG/M
3300001661	Mediterranean Blodgett CA OM1_O3 (Mediterranean Blodgett coassembly)	Environmental	Open in IMG/M
3300002245	Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)	Environmental	Open in IMG/M
3300004092	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3, ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300004152	Coassembly of ECP12_OM1, ECP12_OM2, ECP12_OM3	Environmental	Open in IMG/M
3300005524	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen10_05102014_R1	Environmental	Open in IMG/M
3300005529	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen16_06102014_R1	Environmental	Open in IMG/M
3300005534	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen07_05102014_R1	Environmental	Open in IMG/M
3300005538	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen03_05102014_R1	Environmental	Open in IMG/M
3300005591	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF1	Environmental	Open in IMG/M
3300005602	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2	Environmental	Open in IMG/M
3300005610	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3	Environmental	Open in IMG/M
3300005712	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 4	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005921	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6	Environmental	Open in IMG/M
3300006638	Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE PermafrostL2-A	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010371	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1	Environmental	Open in IMG/M
3300010396	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-2	Environmental	Open in IMG/M
3300011120	Combined assembly of Microbial Forest Soil metaT	Environmental	Open in IMG/M
3300014493	Permafrost microbial communities from Stordalen Mire, Sweden - 712S2M metaG	Environmental	Open in IMG/M
3300014499	Permafrost microbial communities from Stordalen Mire, Sweden - 612S2S metaG	Environmental	Open in IMG/M
3300016422	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111	Environmental	Open in IMG/M
3300017959	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP10_10_MG	Environmental	Open in IMG/M
3300017973	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP10_20_MG	Environmental	Open in IMG/M
3300018060	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP05_10_MG	Environmental	Open in IMG/M
3300018085	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP15_20_MG	Environmental	Open in IMG/M
3300020582	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-O	Environmental	Open in IMG/M
3300021170	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-M	Environmental	Open in IMG/M
3300021181	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-O	Environmental	Open in IMG/M
3300021402	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-O	Environmental	Open in IMG/M
3300021403	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-O	Environmental	Open in IMG/M
3300021404	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-O	Environmental	Open in IMG/M
3300021405	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-O	Environmental	Open in IMG/M
3300021407	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-O	Environmental	Open in IMG/M
3300021433	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-O	Environmental	Open in IMG/M
3300021474	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-O	Environmental	Open in IMG/M
3300021477	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-O	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300025679	Arctic peat soil from Barrow, Alaska - NGEE Surface sample F53-3 deep-092012 (SPAdes)	Environmental	Open in IMG/M
3300025862	Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE PermafrostL2-A (SPAdes)	Environmental	Open in IMG/M
3300026118	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300027853	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF1 (SPAdes)	Environmental	Open in IMG/M
3300027869	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen03_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027895	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_O1 (SPAdes)	Environmental	Open in IMG/M
3300027908	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O2 (SPAdes)	Environmental	Open in IMG/M
3300027965	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen12_06102014_R2 (SPAdes)	Environmental	Open in IMG/M
3300027986	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen07_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300028800	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG	Host-Associated	Open in IMG/M
3300029701	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-O (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300029882	III_Palsa_E1 coassembly	Environmental	Open in IMG/M
3300030626	Metatranscriptome of forest soil microbial communities from Boreal Montmorency Forest, Quebec, Canada - FO410-VDE110SO (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300030741	Forest Soil Metatranscriptomes Boreal Montmorency Forest, Quebec, Canada ANR Co-assembly	Environmental	Open in IMG/M
3300030863	Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZU2 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031057	Oak Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031064	Forest soil microbial communities from USA, for metatranscriptomics studies - Jemez Pines PO 3C (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031236	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_1	Environmental	Open in IMG/M
3300031247	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-25 metaG	Host-Associated	Open in IMG/M
3300031524	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Bog_T0_3	Environmental	Open in IMG/M
3300031544	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f26	Environmental	Open in IMG/M
3300031546	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f23	Environmental	Open in IMG/M
3300031682	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f22	Environmental	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300031712	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB3-27 metaG	Host-Associated	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300032051	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f26	Environmental	Open in IMG/M
3300032515	FICUS49499 Metatranscriptome Czech Republic combined assembly (additional data)	Environmental	Open in IMG/M
3300032770	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.5	Environmental	Open in IMG/M
3300032783	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.3	Environmental	Open in IMG/M
3300032805	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.2	Environmental	Open in IMG/M
3300032828	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.4	Environmental	Open in IMG/M
3300032892	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.5	Environmental	Open in IMG/M
3300032893	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.1	Environmental	Open in IMG/M
3300032895	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.3	Environmental	Open in IMG/M
3300032896	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.4	Environmental	Open in IMG/M
3300032898	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.1	Environmental	Open in IMG/M
3300032954	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.2	Environmental	Open in IMG/M
3300033134	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.2	Environmental	Open in IMG/M
3300033158	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.1	Environmental	Open in IMG/M
3300033977	Tropical peat soil microbial communities from peatlands in Loreto, Peru - SJ75	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
GBAN_2058440	2029527000	Green-Waste Compost	VESSMPPSRRKRVLWTAADLKVLKKLAGREPTARIARQLKRSPAAVRYKAWEKGIRLNRKRA
JGI12053J15887_103531321	3300001661	Forest Soil	MPRTTRRKRVLWAADELKTLRKLAGKEGVRKIARLLKRSEAAVRFKAWQKRIKLAVRKAKSKKA*
JGIcombinedJ26739_1012777672	3300002245	Forest Soil	MPRTTRRKRVLWAADELKTLRKLAGKEGVRKIARLLKRSEAAVRFKAWQKRIKLAVRKAKKA*
Ga0062389_1033534042	3300004092	Bog Forest Soil	KRVLWTADELKTLRKLAGKEGVRKIARQLKRSEAAVRFKAWQRRIKLAVKKTLSKASR*
Ga0062386_1002456252	3300004152	Bog Forest Soil	MPRTTRRKRVLWTADELKTLRKLAGKEGVRKIARQLKRSEAAVRFKAWQIRVKLAVRKARSK*
Ga0070737_1000018253	3300005524	Surface Soil	MPRPRRRKRVLWTSKELNTLKKLAGRQGVRRIAKQLGRSEAAVRFKAWQKRIKLAVRRP*
Ga0070741_113686581	3300005529	Surface Soil	MPRMRRKRILWTSADVKVLKQLAGKQSTKKIARQLKRSEAAVRFKAWQMKLSLGVTRGARAKRKQARRA*
Ga0070735_103332171	3300005534	Surface Soil	MPRTRRKRVLWTATELKLLKKMAGRQGVRKIARQLKRSEAAVRFKAWQKRIKLALKRA*
Ga0070735_109131872	3300005534	Surface Soil	MPRTRRKRVLWTASELKLLKKMAGRQGVRKIARQLKRSEAAVRFKAWQKRIKLALKKL*
Ga0070731_109674001	3300005538	Surface Soil	MPRTTRRKRVLWAAHELKTLRKLAGKEGVRKIARLLKRSEAAVRFKAWQKRIKLAVRRTV
Ga0070761_101279162	3300005591	Soil	MPRTRRKRVLWTATELKLLKKMAGRQGVRKIARQLKRSEAAVRFKAWQKRIKLALKKV*
Ga0070761_103445822	3300005591	Soil	MPRTTRRKRVLWAADELKTLRKLAGKEGVRKIARQLKRSEAAVRFKAWQKRVKLAVRKAKSK*
Ga0070761_104346682	3300005591	Soil	MPRTTRRKRVLWTADELKTLKKLAGKEGVRKIARQLKRSEAAVRFKAWQKRVKLAVKKAKSA*
Ga0070762_102345552	3300005602	Soil	MPRTTRRKRVLWAADELKTLRKLAGKEGVRKIARQLKRSEAAVRFKAWQKRIKLAVRKAKSK*
Ga0070763_107335771	3300005610	Soil	MPRTTRRKRVLWAADELKTLRKLAGKEGVRKIARLLKRSEAAVRFKAWQKRIKLAVRKAKSK*
Ga0070764_102878661	3300005712	Soil	MPRTTRRKRVLWTTDELKTLRKLAGKEGVRKIARLLKRSEAAVRFKAWQKRVKLAVKKL*
Ga0066903_1030299121	3300005764	Tropical Forest Soil	MARSRRKRVLWTAAELKLLRKLAGKQGVRRIARQLKRSEAAVRFKAWQKRIKLAVRRA*
Ga0070766_110260251	3300005921	Soil	MPRTTRRKRVLWTADELKTLRKLAGKEGVRKIARQLKRSEAAVRFKAWQKRIKLAVRKAKSK*
Ga0075522_100078503	3300006638	Arctic Peat Soil	MPRTTRRKRVLWTTDELKTLRKLAGKEGVRKIARQLKRSEAAVRFKAWQKRVKLAVKRI*
Ga0126378_121570461	3300010361	Tropical Forest Soil	MARPRRKRVLWTAAELKLLKRLAGKQGVRKIARQLKRSEAAVRFKAWQKRIKLAVRK*
Ga0134125_110206891	3300010371	Terrestrial Soil	MPRPRRRKRVLWTSKELSTLKKLAGRQGVRRIAKQLGRSEAAVRFKAWQKRIKLAVRKS*
Ga0134126_101525061	3300010396	Terrestrial Soil	RVLWTSKELSTLKKLAGRQGVRRIAKQLGRSEAAVRFKAWQKRIKLAVRKS*
Ga0150983_137800111	3300011120	Forest Soil	MPRTTRRKRILWTADELKTLRKLAGKDGVRKIARQLKRSEAAVRFKAWQKRIKLAVKKASGKKA*
Ga0182016_103057022	3300014493	Bog	MPRITRRKRVLWAADELKTLRKLAGKEGVRKIARLLKRSEAAVRFKAWQKRIKLAVRKAKSKKA*
Ga0182012_101290572	3300014499	Bog	MPRITRRKRILWTTDELKTLRKLAGKEGVRKIARQLKRSEAAIRFKAWQKRIKLAVKKVATRKGR*
Ga0182039_119590101	3300016422	Soil	MARSRRKRVLWTAAELKVLKKLAGKQGVRRIARQLKRSEAAVRFKAWQKRIKLAVR
Ga0187779_102167672	3300017959	Tropical Peatland	MARARRKRVLWTAAELKQLKKLAGKQGVRKIARQLKRSEAAVRFKAWQKRIKLALKRA
Ga0187779_103062741	3300017959	Tropical Peatland	MARPRRKRVLWTSAELKLLKKLAGKQGVRKIARQLKRSEAAVRFKAWQKRIELALKRS
Ga0187780_101881972	3300017973	Tropical Peatland	MARARRKRVLWTSAELKTLKKLAGKQGVRKIARQLKRSEAAVRFKAWQKRIKLALKRA
Ga0187765_101848792	3300018060	Tropical Peatland	MPRARRKRVLWTSDELKTLRKLAGRQNVSRIARQLKRSEAAVRFKAWQKRIKLAVKKA
Ga0187765_102458342	3300018060	Tropical Peatland	MARSRRKRVLWTSAELKLLKKFAGKQGVRKIARQLKRSEAAVRFKAWQKRIKLALKRS
Ga0187772_106471631	3300018085	Tropical Peatland	MARRPRRKRVLWTSAELKLLKKLAGKQGVRKIARQLKRSEAAVRFKAWQKRIKLAVKRA
Ga0187772_112957041	3300018085	Tropical Peatland	MARARRKRILWTPAELKTLKKLAGKQGVRKIARQLKRSEAAVRFKAWQKRIKLALKRA
Ga0210395_100322414	3300020582	Soil	MPRTTRRKRVLWAADELKTLRKLAGKEGVRKIARQLKRSEAAVRFKAWQKRIKLAVRKAK
Ga0210395_103305112	3300020582	Soil	MPRTRRKRVLWTATELKLLKKMAGRQGVRKIARQLKRSEAAVRFKAWQKRIKLALKKV
Ga0210400_100164703	3300021170	Soil	MPRTSRRKRVLWTADELKSLRKLAGKEGVRKIARQLKRSEAAVRFKAWQKRIKLAVRKTVAKASR
Ga0210400_108371351	3300021170	Soil	MPRTTRRRRVLWTTVELKTLRKLAGKDGVRKIARQLKRSEAAVRFKAWQKRIKLAVKKL
Ga0210388_111582243	3300021181	Soil	MPRTTRRKRVLWTADELKTLRKLAGKDGVRKIARQLKRSEAAVRFKAWQRRIKLAVKRTVSKVKKA
Ga0210385_100806884	3300021402	Soil	MPRTTRRKRVLWTADELKTLKKLAGKEGVRKIARQLKRSEAAVRFKAWQKRVKLAVKKAKGG
Ga0210385_106309032	3300021402	Soil	MPRTRRKRVLWTASELKLLKKMAGRQGVRKIARQLKRSEAAVRFKAWQKRIKLALRKA
Ga0210397_104314223	3300021403	Soil	MPRTTRRKRVLWTADELKTLRKLAGKEGVRKIARQLKRSEAAVRFKAWQRRIK
Ga0210389_103101782	3300021404	Soil	MPRTTRRKRVLWTADELKTLRKLAGKEGVRKIARQLKRSEAAVRFKAWQRRIKLAVKRTVSKAKKA
Ga0210387_102131772	3300021405	Soil	MPRTTRRKRVLWAADELKTLRKLAGKEGVRKIARLLKRSEAAVRFKAWQKRIKLAVRKAKSKKA
Ga0210387_102347012	3300021405	Soil	MPRTTRRKRVLWTADELKTLRKLAGKVGVRKLASQLKRSEAAVRFKAWQKRVKLAVKKVKSK
Ga0210383_108677752	3300021407	Soil	MPRTTRRKRVLWTAVELKTLRKLAGKEGVRKIARQLKRSEAAVRFKAWQLRV
Ga0210391_1000029852	3300021433	Soil	MPRTTRRKRVLWTTDELKTLRKLAGKEGVRKIARQLKRSEAAVRFKAWQKRVKLAVKRI
Ga0210391_100194303	3300021433	Soil	MPRTTRRKRVLWAADELKTLRKLAGKEGVRKIARQLKRSEAAVRFKAWQKRIKLAVRKAKSK
Ga0210391_113965352	3300021433	Soil	MPRTTRRKRVLWTADELKILRKLAGKEGVRKIARQLKRSEAAVRFKAWQRRIKLAVKKTVGKASR
Ga0210390_100383261	3300021474	Soil	RVLWAADELKTLRKLAGKEGVRKIARQLKRSEAAVRFKAWQKRIKLAVRKAKS
Ga0210398_102317313	3300021477	Soil	MPRTTRRKRVLWAADELKTLRKLAGKEGVRKIARLLKRSEAAVRFKAWQKRIKL
Ga0126371_100389121	3300021560	Tropical Forest Soil	MPRPRRRKRVLWTARELSTLKKLAGRQGVRRIAKQLGRSEAAVRFKAWQKRIKLAV
Ga0126371_115379152	3300021560	Tropical Forest Soil	MPRMRRKRNLWTSTDVKALKHLAGKQSTKNIARRLKRSEAAVRFKAWEMKL
Ga0207933_10824871	3300025679	Arctic Peat Soil	MPRTTRRRRVLWTADELKTLRKLAGKEGVRKIARQLKRSEAAVRFKAWQKRIKL
Ga0209483_10847822	3300025862	Arctic Peat Soil	MPRTTRRKRVLWAADELKTLRKLAGKEGVRKIARLLKRSEAAVRFKAWQKRVKLAVRKAKSKKA
Ga0207675_1002664533	3300026118	Switchgrass Rhizosphere	MPSARKKKRIAWTAADLKLLKSLAGKQPVSKIARQLKRSEAGVRFQAHKKRVSLALK
Ga0209274_103199721	3300027853	Soil	MPRTTRRKRVLWTADELKTLKKLAGKEGVRKIARQLKRSEAAVRFKAWQKRVKLAVRKAKSG
Ga0209579_104910522	3300027869	Surface Soil	MPRTRRKRVLWTASELKLLKKMAGRQGVRKIARQLKRSEAAVRFKAWQKRIKLALKKL
Ga0209624_103292821	3300027895	Forest Soil	MPRTTRRKRVLWTADELKTLRKLAGKEGVRKIARQLKRSEAAVRFKAWQRRVKLAVKKTVRKA
Ga0209624_107802472	3300027895	Forest Soil	MPRTTRRRRVLWTTVELKTLRKLAGKDGVRKIARQLKRSEAAVRFKAWQKRIKLAVRKL
Ga0209006_102570893	3300027908	Forest Soil	MPRTTRRKRVLWAADELKTLRKLAGKEGVRKIARLLKRSEAAVRFKAWQKRIKLAVRKAKKA
Ga0209006_113889731	3300027908	Forest Soil	MPRTTRRKRVLWTADELKTLKKLAGKEGVRKIARQLKRSEAAVRFKAWQKRVKLAVKKAKSG
Ga0209062_100145627	3300027965	Surface Soil	MPRPRRRKRVLWTSKELNTLKKLAGRQGVRRIAKQLGRSEAAVRFKAWQKRIKLAVRRP
Ga0209168_101613171	3300027986	Surface Soil	MPRTRRKRILWTATELKLLKKMAGRQGVRKIARQLKRSEAAVRFKAWQKRIKLALKRA
Ga0265338_100827031	3300028800	Rhizosphere	MPRTTRRKRVIWTAAELKILRTLAGKERVRKIARQLKRSEAAVRFKAWQRRIKLAVKKTVSKVSR
Ga0222748_11292132	3300029701	Soil	MPRTTRRKRVLWAADELKTLRKLAGKEGVRKIARQLKRSEAAVRFKAWQLRVKLAVRKDRSK
Ga0311368_111534582	3300029882	Palsa	ILWTTDELKTLRKLAGKEGVRKIARQLKRSEAAIRFKAWQKRIKLAVKKIASK
Ga0210291_117838591	3300030626	Soil	SELAMPRTTRRKRVLWTADELKTLRQLAGKEGVRKIARQLKRSEAAVRFKAWQRRIKLAVKKTVGKASR
Ga0265459_118640713	3300030741	Soil	MPRTTRRKRVLWAADELKTLRKLAGKDGVRKIARLLKRSEAAVRFKAWQKRIKLAVRKAKSKKA
Ga0265766_10235921	3300030863	Soil	MPRTTRRKRVLWAADELKTLRKLAGKEGVRKIARLLKRSEAAVRFKAWQKRIKLAVRKAKSKIA
Ga0170834_1023759671	3300031057	Forest Soil	TTRRKRVLWTAVELKALRKLAGKDSVRKISRQLKRSEAAVRFKAWQLRVKLAVRKI
Ga0170834_1041367751	3300031057	Forest Soil	MPRTSRRKRVLWTADELKTLRKLAGKEGVRKIARQLKRSEAAVRFKAWQKRIKLAVRKAAGKASG
Ga0102767_107312632	3300031064	Soil	RKRILWTADELKTLKKLAGKEGVRKIARQLKRSEAAVRFKAWQKRIKLAVRKIAKKI
Ga0170824_1134792492	3300031231	Forest Soil	MPRTTRRKRVLWTADELKTLRKLAGKDGVRKIARQLKRSEAAVRFKAWQRRIKLAVKRTVSKAKKA
Ga0170824_1160893001	3300031231	Forest Soil	MPRTTRRKRVLWAADELKTLRKLAGKEGVRKIARLLKRSEAAVRFKAWQKRIKLAVRKVKSK
Ga0302324_1013628812	3300031236	Palsa	KRILWTTDELKTLRKLAGKEGVRKIARQLKRSEAAIRFKAWQKRIKLAVKKIASK
Ga0265340_100455383	3300031247	Rhizosphere	MPRTTRRKRVLWTTDELKTLRKLAGKEGVRKIARQLKRSEAAVRFKAWQKRVKLAVKKA
Ga0302320_119472442	3300031524	Bog	MPRITRRKRILWTTDELKTLRKLAGKEGVRKIARQLKRSEAAIRFKAWQKRIKLAVKKVATRKGR
Ga0318534_106151351	3300031544	Soil	MARSRRKRVLWTAAELRVLKKLAGKQGVRRIARQLKRSEAAVRFKAWQKRIKLAVRKA
Ga0318538_101896142	3300031546	Soil	MARPRRKRVLWTAAELKLLKRLAGKQGVRKISRQLKRSEAAVRFKAWQKRIKLALKRA
Ga0318560_102125132	3300031682	Soil	MARSRRKRVLWTAAELKVLKKLAGKQGVRRIARQLKRSEAAVRFKAWQKRIKLAVRRAA
Ga0318560_108242771	3300031682	Soil	MARSRRKRVLWTAAELRVLKKLAGKQGVRRIARQLKRSEAAVRFKAWQKRIKLAVRRAA
Ga0310686_1146503073	3300031708	Soil	MPRTTRRKRVLWTADELKTLKKLSGKEGVRKIARQLKRSEAAVRFKAWQKRVKLAVKKAKSA
Ga0310686_1170397221	3300031708	Soil	MPRTTRRRRVLWTTDQLKTLRKLAGKAGVRKIARQLKRSEAAVRFKAWQKRIKLAVRKS
Ga0265342_106288102	3300031712	Rhizosphere	MPRTTRRKRVLWTSDELKTLRKLAGKDGVRKIARQLKRSEAAVRFKAWQKRIKLAVKKVKSAVKKV
Ga0306923_107055692	3300031910	Soil	MARSRRKRVLWTAAELKVLKKLAGKQGVRRIARQLKRSEAAVRFKAWQKRIKLAVRKA
Ga0318532_101873282	3300032051	Soil	HMARPRRKRVLWTAAELKLLKRLAGKQGVRKISRQLKRSEAAVRFKAWQKRIKLALKRA
Ga0348332_109610742	3300032515	Plant Litter	MPRTTRRKRILWTADELKTLKKLAGKEGVRKIARQLKRSEAAVRFKAWQKRIKLAVRKVAKKV
Ga0348332_113269202	3300032515	Plant Litter	MPRTTRRKRVLWTADELKTLKKLAGKEGVRKIARQLKRSEAAVRFKAWQKRVKLAVKKAKSA
Ga0348332_118937832	3300032515	Plant Litter	MPRITRRKRVLWTADELKTLRKLAGKEGVRKIARQLKRSEAAVRFKAWQKRVKLAVKKVKSK
Ga0348332_135376722	3300032515	Plant Litter	VLWAADELKTLRKLAGKEGVRKIARLLKRSEAAVRFKAWQKRIKLAVRKAKSKKA
Ga0335085_10000027196	3300032770	Soil	MPRPRRKRVLWTAAELKMLRKLAGRQGVRHIARQLRRSEAAVRFKAWQKRIKLAVRRA
Ga0335085_100543323	3300032770	Soil	MPRTTRRKRVLWTTDQLKTLRKLAGKETVRNLARQLKRSEAAVRFKAWQKRLKLAVRKASRP
Ga0335085_116610651	3300032770	Soil	MARTRRKRVLWTAAELKLLRKLAGREGVRRIARQLKRSEAAVRFKAWQKRIKLAVRKA
Ga0335079_100042599	3300032783	Soil	MPRTRRKRILWTAAELKTLRKLAGRQGVRRIARQLKRSEAAVRFKAWQKRIKLAVKRA
Ga0335079_107377952	3300032783	Soil	MPRPRRKRVLWTAAELKMLRKLAGRQGVRHIARQLKRSEAAVRFKAWQKRIKLAVRRA
Ga0335078_115197661	3300032805	Soil	MPRTRRKRVLWTASELKLLKKMAGKQGVRKIARQLKRSEAAVRFKAWQKRIKLALRKL
Ga0335080_103278952	3300032828	Soil	MPRTRRKRILWTPAELKTLRKLAGRQGVRRIARQLKRSEAAVRFKAWQKRIKLAVKRA
Ga0335080_108053812	3300032828	Soil	MPRTRRKRVLWTAAELKLLKQMAGRQGVRRIARQLKRSEAAVRFKAWQKRIKLAVRKA
Ga0335081_109117372	3300032892	Soil	MPRTRRKRILWTSTELKLLRKLAGRQGVRRIARQLKRSEAAVRFKAWQKRIKLAVKRA
Ga0335069_106040122	3300032893	Soil	MPRSTRRRRVLWTAADLKILKTLAGKHSVRQLARQLKRSEAAVRFKAWEKRITLAVRKSARGR
Ga0335069_108952592	3300032893	Soil	MPRTRRKRVLWTASELKLLKQLAGRQGVRRIARQLKRSEAAVRFKAWQKRIKLAVRKA
Ga0335074_1000029838	3300032895	Soil	MPRPRRKRVLWTPVELKLLKKLAGRQGVRRIARQLKRSEAAVRFKAWQKRIKLAVKKA
Ga0335074_1000039740	3300032895	Soil	MPRPRRKRVLWTATELKLLKKLAGKQGVRRIARQLKRSEAAVRFKAWQKRVKLAVRKA
Ga0335074_1000089730	3300032895	Soil	MPRPRRKRVLWTPAELKLLKKLAGRQGVRRIARQLKRSEAAVRFKAWQKRIKLAVRKS
Ga0335074_100141036	3300032895	Soil	MPRMHRKRILWSPAHVKLLKQLAGKKPVKRIARELKRSEAAVRFKAWQKRIKLAVA
Ga0335074_1001835612	3300032895	Soil	MPRTPAKRNLWTAADLKLLKQLAGKQSVKRIAKQLKRSEAAVRFKAWRKRIILAHGGRVRVKMKRARLP
Ga0335074_100242814	3300032895	Soil	MPRPRRKRVLWTAAELKLLRKLAGRQGVRRIARQLKRSEAAVRFKAWQKRIKLAVRKS
Ga0335074_100471254	3300032895	Soil	MPRPRRRKRVLWTSKELSTLKKLAGRQGVRRIAKQLGRSEAAVRFKAWQKRIKLAVRKA
Ga0335074_100787503	3300032895	Soil	MPRTARKRNLWSPADLKLLKQLAGKEPVKRIARQLKRSEAAVRFKAWQKRIKLAGGGRARVPV
Ga0335074_101178101	3300032895	Soil	MPRTRRKRVLWSSADQKLLKQMAGKESVKRIARQLKRSESAVRYKAWEKRIKLGAGRRARVKVTRARMP
Ga0335074_102485082	3300032895	Soil	MPRTRRKRVLWTPAELKTLKQLAGKQGVRRIARQLKRSEAAVRFKAWQKRIKLAVRKA
Ga0335074_106778442	3300032895	Soil	MPRTRRKRILWSSADVKLLKQLAGKQSARQIARQLKRSEAAVRYKAWESGIKLAARRRARAK
Ga0335075_1000781813	3300032896	Soil	MPRITRRKRILWTADELKTLKKLAGKEGVRKIARQLKRSEAAVRFKAWQKRIKLAVRKAV
Ga0335075_1003107210	3300032896	Soil	MPRPRRKRVLWTAAELKLLKKLAGKRGVRQIAKQLKRSEAAVRFKAWQKRIKLAVRRV
Ga0335075_107368462	3300032896	Soil	MPRPRRKRVLWTPAELKLLRKLAGRQGVRRIARQLKRSEAAVRFKAWQKRIKLAVKKA
Ga0335072_116233522	3300032898	Soil	MPRPRRRKRVLWTSKELATLKKLAGRQGVRRIAKQLGRSEAAVRFKAWQKRIKLAVRKG
Ga0335083_106307742	3300032954	Soil	MPPTSRRKRVLWTADELKTLRKLAGKEGVRKIARQLKRSEAAVRFKAWQKRVKLAVRKAKAAAKSK
Ga0335073_109236821	3300033134	Soil	MPRTRRKRVLWTAAELKLLKQLAGRQGVRRIARQLKRSEAAVRFKAWQKRIKLAVKKA
Ga0335073_118432961	3300033134	Soil	MPRTTRRKRVLWTSVELKLLRKLAGKEGVRKIARQLKRSEAAVRFKAWQKRIKLAVKKA
Ga0335077_101086632	3300033158	Soil	MPRMRRKRILWTPAHVKLLKQLAGKHPVKRIARQLKRSEAAVRFKAWQKRIKLAVS
Ga0335077_101841312	3300033158	Soil	MPRARRKRVLWTASELKLLKKLAGRQGVRRIARQLKRSEAAVRFKAWQKRIKLAVRKA
Ga0335077_105095793	3300033158	Soil	MARPRRKRVLWTSAELKLLRKLAGKQGVRKIARQLKRSEAAVRFKAWQKRIK
Ga0314861_0458325_390_551	3300033977	Peatland	MPRTTRRKRVLWTSAELKLLRKLAGKEGVRKIARQLKRSEAAVRFKAWQKRIKL

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F070040

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences