Metagenome / Metatranscriptome Family F069302

Basic Information
Family ID	F069302
Family Type	Metagenome / Metatranscriptome
Number of Sequences	124
Average Sequence Length	52 residues
Representative Sequence	MQPNNDPVGELKTNGPSPSAVPAEMPDSRVNGGASPELLDLLNALQSMRVGDFSV
Number of Associated Samples	110
Number of Associated Scaffolds	124

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	100.00 %
% of genes near scaffold ends (potentially truncated)	100.00 %
% of genes from short scaffolds (< 2000 bps)	91.13 %
Associated GOLD sequencing projects	106
AlphaFold2 3D model prediction	No

Most Common Taxonomy
Group	Unclassified (71.774 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (24.194 % of family members)
Environment Ontology (ENVO)	Unclassified (32.258 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (48.387 % of family members)

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Predicted Topology & Secondary Structure
Classification:	Fibrous	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 21.82% β-sheet: 0.00% Coil/Unstructured: 78.18%
Feature Viewer

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Pfam ID	Name	% Frequency in 124 Family Scaffolds
PF05378	Hydant_A_N	37.90
PF02538	Hydantoinase_B	2.42
PF00005	ABC_tran	1.61
PF04909	Amidohydro_2	0.81
PF03466	LysR_substrate	0.81

COG ID	Name	Functional Category	% Frequency in 124 Family Scaffolds
COG0145	N-methylhydantoinase A/oxoprolinase/acetone carboxylase, beta subunit	Amino acid transport and metabolism [E]	75.81
COG0146	N-methylhydantoinase B/oxoprolinase/acetone carboxylase, alpha subunit	Amino acid transport and metabolism [E]	4.84

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	71.77 %
All Organisms	root	All Organisms	28.23 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	71.77 %
cellular organisms	root	All Organisms → cellular organisms	28.23 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	71.77 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	28.23 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	71.77 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	23.39 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	71.77 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	19.35 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	71.77 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	11.29 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	4.84 %
Caulobacterales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Caulobacterales	1.61 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	0.81 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	71.77 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	11.29 %
Hyphomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	2.42 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	2.42 %
Caulobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Caulobacterales → Caulobacteraceae	1.61 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	0.81 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	71.77 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	11.29 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2.42 %
Rhodoplanes	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes	2.42 %
unclassified Caulobacteraceae	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Caulobacterales → Caulobacteraceae → unclassified Caulobacteraceae	1.61 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	0.81 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	71.77 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	11.29 %
unclassified Rhodoplanes	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes	2.42 %
Caulobacteraceae bacterium PMMR1	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Caulobacterales → Caulobacteraceae → unclassified Caulobacteraceae → Caulobacteraceae bacterium PMMR1	1.61 %
Bradyrhizobium elkanii	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium elkanii	1.61 %
unclassified Bradyrhizobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium	0.81 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	0.81 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	71.77 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	11.29 %
Rhodoplanes sp. Z2-YC6860	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	2.42 %
Caulobacteraceae bacterium PMMR1	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Caulobacterales → Caulobacteraceae → unclassified Caulobacteraceae → Caulobacteraceae bacterium PMMR1	1.61 %
Bradyrhizobium elkanii	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium elkanii	1.61 %
Bradyrhizobium sp. URHA0002	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. URHA0002	0.81 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	0.81 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000597\|AF_2010_repII_A1DRAFT_10094157	Not Available	742	Open in IMG/M
3300000789\|JGI1027J11758_12614141	Not Available	707	Open in IMG/M
3300000890\|JGI11643J12802_11681270	Not Available	905	Open in IMG/M
3300001976\|JGI24752J21851_1058217	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. URHA0002	531	Open in IMG/M
3300002076\|JGI24749J21850_1042445	Not Available	668	Open in IMG/M
3300002245\|JGIcombinedJ26739_100984060	Not Available	728	Open in IMG/M
3300004157\|Ga0062590_101150781	Not Available	752	Open in IMG/M
3300004267\|Ga0066396_10001435	Not Available	2106	Open in IMG/M
3300004480\|Ga0062592_101306511	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Caulobacterales → Caulobacteraceae → unclassified Caulobacteraceae → Caulobacteraceae bacterium PMMR1	685	Open in IMG/M
3300004643\|Ga0062591_101446842	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Caulobacterales → Caulobacteraceae → unclassified Caulobacteraceae → Caulobacteraceae bacterium PMMR1	684	Open in IMG/M
3300005174\|Ga0066680_10827673	Not Available	555	Open in IMG/M
3300005174\|Ga0066680_10882134	Not Available	532	Open in IMG/M
3300005180\|Ga0066685_10424405	All Organisms → cellular organisms → Bacteria → Proteobacteria	923	Open in IMG/M
3300005332\|Ga0066388_100671716	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	1647	Open in IMG/M
3300005332\|Ga0066388_101863914	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1072	Open in IMG/M
3300005332\|Ga0066388_102389613	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	958	Open in IMG/M
3300005366\|Ga0070659_101541506	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium elkanii	593	Open in IMG/M
3300005439\|Ga0070711_101186364	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium elkanii	660	Open in IMG/M
3300005444\|Ga0070694_100176222	Not Available	1579	Open in IMG/M
3300005553\|Ga0066695_10583896	Not Available	673	Open in IMG/M
3300005587\|Ga0066654_10087054	Not Available	1479	Open in IMG/M
3300005764\|Ga0066903_102354917	All Organisms → cellular organisms → Bacteria → Proteobacteria	1029	Open in IMG/M
3300006028\|Ga0070717_10262066	Not Available	1529	Open in IMG/M
3300006051\|Ga0075364_10971358	Not Available	578	Open in IMG/M
3300006172\|Ga0075018_10007686	All Organisms → cellular organisms → Bacteria → Proteobacteria	3905	Open in IMG/M
3300006605\|Ga0074057_12120452	All Organisms → cellular organisms → Bacteria → Proteobacteria	1046	Open in IMG/M
3300006853\|Ga0075420_101673031	Not Available	545	Open in IMG/M
3300006903\|Ga0075426_10651724	Not Available	788	Open in IMG/M
3300006904\|Ga0075424_100062511	All Organisms → cellular organisms → Bacteria	3895	Open in IMG/M
3300006969\|Ga0075419_10204826	Not Available	1307	Open in IMG/M
3300009174\|Ga0105241_11671379	Not Available	618	Open in IMG/M
3300009176\|Ga0105242_12416372	Not Available	573	Open in IMG/M
3300010047\|Ga0126382_10869398	Not Available	777	Open in IMG/M
3300010322\|Ga0134084_10391510	Not Available	540	Open in IMG/M
3300010323\|Ga0134086_10449975	Not Available	526	Open in IMG/M
3300010359\|Ga0126376_10267049	Not Available	1467	Open in IMG/M
3300010359\|Ga0126376_12041828	Not Available	616	Open in IMG/M
3300010360\|Ga0126372_12075677	Not Available	616	Open in IMG/M
3300010366\|Ga0126379_10195238	All Organisms → cellular organisms → Bacteria	1941	Open in IMG/M
3300010366\|Ga0126379_11040627	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	924	Open in IMG/M
3300010366\|Ga0126379_11563771	Not Available	765	Open in IMG/M
3300010398\|Ga0126383_10529009	All Organisms → cellular organisms → Bacteria → Proteobacteria	1242	Open in IMG/M
3300010863\|Ga0124850_1079632	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	977	Open in IMG/M
3300011119\|Ga0105246_10831015	Not Available	822	Open in IMG/M
3300011271\|Ga0137393_10539391	Not Available	1001	Open in IMG/M
3300012201\|Ga0137365_10062582	Not Available	2810	Open in IMG/M
3300012209\|Ga0137379_10260467	Not Available	1646	Open in IMG/M
3300012911\|Ga0157301_10126003	Not Available	786	Open in IMG/M
3300012918\|Ga0137396_10769919	Not Available	708	Open in IMG/M
3300012922\|Ga0137394_10779497	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	802	Open in IMG/M
3300012923\|Ga0137359_11738865	Not Available	511	Open in IMG/M
3300012948\|Ga0126375_10862373	Not Available	724	Open in IMG/M
3300012951\|Ga0164300_10670952	Not Available	623	Open in IMG/M
3300012971\|Ga0126369_10415160	Not Available	1387	Open in IMG/M
3300012971\|Ga0126369_11146771	Not Available	867	Open in IMG/M
3300012971\|Ga0126369_11443865	Not Available	778	Open in IMG/M
3300012971\|Ga0126369_13243565	Not Available	533	Open in IMG/M
3300013297\|Ga0157378_10674605	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1051	Open in IMG/M
3300015371\|Ga0132258_11157633	Not Available	1955	Open in IMG/M
3300015374\|Ga0132255_104238381	Not Available	608	Open in IMG/M
3300016270\|Ga0182036_10460248	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1001	Open in IMG/M
3300016319\|Ga0182033_10920434	Not Available	775	Open in IMG/M
3300016341\|Ga0182035_10954010	Not Available	758	Open in IMG/M
3300016357\|Ga0182032_10423065	All Organisms → cellular organisms → Bacteria	1082	Open in IMG/M
3300016357\|Ga0182032_10816805	Not Available	789	Open in IMG/M
3300016387\|Ga0182040_10257736	Not Available	1314	Open in IMG/M
3300016422\|Ga0182039_10646808	Not Available	928	Open in IMG/M
3300018051\|Ga0184620_10202276	Not Available	660	Open in IMG/M
3300018055\|Ga0184616_10199469	Not Available	751	Open in IMG/M
3300018469\|Ga0190270_10658780	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1031	Open in IMG/M
3300021086\|Ga0179596_10422950	Not Available	673	Open in IMG/M
3300021560\|Ga0126371_10894268	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1032	Open in IMG/M
3300021560\|Ga0126371_13533454	Not Available	527	Open in IMG/M
3300025938\|Ga0207704_10806933	Not Available	784	Open in IMG/M
3300026041\|Ga0207639_10688612	Not Available	948	Open in IMG/M
3300026088\|Ga0207641_10973430	Not Available	844	Open in IMG/M
3300026306\|Ga0209468_1028216	All Organisms → cellular organisms → Bacteria	1973	Open in IMG/M
3300026314\|Ga0209268_1178185	Not Available	524	Open in IMG/M
3300026361\|Ga0257176_1086440	Not Available	513	Open in IMG/M
3300027071\|Ga0209214_1021193	Not Available	834	Open in IMG/M
3300027748\|Ga0209689_1044884	Not Available	2516	Open in IMG/M
3300027874\|Ga0209465_10050420	Not Available	1990	Open in IMG/M
3300027875\|Ga0209283_10935784	Not Available	521	Open in IMG/M
3300028047\|Ga0209526_10471126	Not Available	823	Open in IMG/M
3300028710\|Ga0307322_10046405	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1053	Open in IMG/M
3300028718\|Ga0307307_10104042	Not Available	868	Open in IMG/M
3300028784\|Ga0307282_10012333	All Organisms → cellular organisms → Bacteria	3452	Open in IMG/M
3300028793\|Ga0307299_10348622	Not Available	555	Open in IMG/M
3300031184\|Ga0307499_10096739	Not Available	803	Open in IMG/M
3300031543\|Ga0318516_10650984	Not Available	600	Open in IMG/M
3300031561\|Ga0318528_10114635	Not Available	1421	Open in IMG/M
3300031561\|Ga0318528_10342656	Not Available	802	Open in IMG/M
3300031640\|Ga0318555_10349786	Not Available	800	Open in IMG/M
3300031681\|Ga0318572_10499714	Not Available	724	Open in IMG/M
3300031682\|Ga0318560_10671512	Not Available	560	Open in IMG/M
3300031713\|Ga0318496_10085323	Not Available	1680	Open in IMG/M
3300031720\|Ga0307469_10502780	Not Available	1063	Open in IMG/M
3300031744\|Ga0306918_10277125	Not Available	1286	Open in IMG/M
3300031747\|Ga0318502_10273633	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	989	Open in IMG/M
3300031748\|Ga0318492_10296907	Not Available	840	Open in IMG/M
3300031751\|Ga0318494_10011432	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	4217	Open in IMG/M
3300031764\|Ga0318535_10185465	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	930	Open in IMG/M
3300031765\|Ga0318554_10184045	Not Available	1189	Open in IMG/M
3300031793\|Ga0318548_10010672	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	3597	Open in IMG/M
3300031799\|Ga0318565_10152891	Not Available	1119	Open in IMG/M
3300031819\|Ga0318568_10158883	Not Available	1384	Open in IMG/M
3300031835\|Ga0318517_10174784	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	964	Open in IMG/M
3300031845\|Ga0318511_10489863	Not Available	568	Open in IMG/M
3300031859\|Ga0318527_10021534	Not Available	2302	Open in IMG/M
3300031893\|Ga0318536_10078225	Not Available	1636	Open in IMG/M
3300031910\|Ga0306923_10957334	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	933	Open in IMG/M
3300031959\|Ga0318530_10183266	Not Available	856	Open in IMG/M
3300032001\|Ga0306922_10967414	Not Available	880	Open in IMG/M
3300032013\|Ga0310906_11353094	Not Available	521	Open in IMG/M
3300032054\|Ga0318570_10193980	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	916	Open in IMG/M
3300032055\|Ga0318575_10154751	Not Available	1140	Open in IMG/M
3300032059\|Ga0318533_10135274	Not Available	1734	Open in IMG/M
3300032059\|Ga0318533_10135898	Not Available	1730	Open in IMG/M
3300032065\|Ga0318513_10310374	Not Available	766	Open in IMG/M
3300032066\|Ga0318514_10017293	All Organisms → cellular organisms → Bacteria	3225	Open in IMG/M
3300032066\|Ga0318514_10054185	Not Available	1948	Open in IMG/M
3300032076\|Ga0306924_12134185	Not Available	573	Open in IMG/M
3300032090\|Ga0318518_10003114	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	6061	Open in IMG/M
3300033290\|Ga0318519_10082270	Not Available	1697	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	86.29%
Host-Associated	Host-Associated	13.71%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	83.87%
Plants	Host-Associated → Plants	13.71%
Aquatic	Environmental → Aquatic	2.42%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	83.87%
Rhizosphere	Host-Associated → Plants → Rhizosphere	7.26%
Rhizoplane	Host-Associated → Plants → Rhizoplane	5.65%
Sediment	Environmental → Aquatic → Sediment	2.42%
Roots	Host-Associated → Plants → Roots	0.81%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	73.39%
Loam	Environmental → Terrestrial → Soil → Loam	10.48%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	6.45%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	4.03%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	2.42%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	1.61%
Bulk Soil	Host-Associated → Plants → Roots → Bulk Soil	0.81%
Soil	Host-Associated → Plants → Rhizosphere → Soil	0.81%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	34.68%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	27.42%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	8.06%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	8.06%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	6.45%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	4.03%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	2.42%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	2.42%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	2.42%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	1.61%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	0.81%
Unclassified	Host-Associated → Plants → Roots → Bulk Soil → Unclassified	0.81%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	0.81%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	24.19%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	12.10%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	8.87%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	8.06%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	6.45%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	6.45%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	5.65%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	3.23%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	2.42%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	2.42%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	2.42%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	1.61%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	1.61%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	1.61%
Corn, Switchgrass And Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	1.61%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.61%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	0.81%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.81%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.81%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.81%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	0.81%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	0.81%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.81%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	0.81%
Populus Endosphere	Host-Associated → Plants → Roots → Bulk Soil → Unclassified → Populus Endosphere	0.81%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.81%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.81%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	0.81%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000597	Forest soil microbial communities from Amazon forest - 2010 replicate II A1	Environmental	Open in IMG/M
3300000789	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000890	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300001976	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S7	Host-Associated	Open in IMG/M
3300002076	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3	Host-Associated	Open in IMG/M
3300002245	Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)	Environmental	Open in IMG/M
3300004157	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - - Combined assembly of AARS Block 2	Environmental	Open in IMG/M
3300004267	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 6 MoBio	Environmental	Open in IMG/M
3300004480	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 4	Environmental	Open in IMG/M
3300004643	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 3	Environmental	Open in IMG/M
3300005174	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_129	Environmental	Open in IMG/M
3300005180	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_134	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005366	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG	Host-Associated	Open in IMG/M
3300005439	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG	Environmental	Open in IMG/M
3300005444	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG	Environmental	Open in IMG/M
3300005553	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_144	Environmental	Open in IMG/M
3300005587	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_103	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006028	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG	Environmental	Open in IMG/M
3300006051	Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4	Host-Associated	Open in IMG/M
3300006172	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2014	Environmental	Open in IMG/M
3300006605	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHAB (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006853	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD4	Host-Associated	Open in IMG/M
3300006903	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD5	Host-Associated	Open in IMG/M
3300006904	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3	Host-Associated	Open in IMG/M
3300006969	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD3	Host-Associated	Open in IMG/M
3300009174	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG	Host-Associated	Open in IMG/M
3300009176	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG	Host-Associated	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010322	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_20cm_2_24_1 metaG	Environmental	Open in IMG/M
3300010323	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_40cm_2_24_1 metaG	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300010863	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (PacBio error correction)	Environmental	Open in IMG/M
3300011119	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG	Host-Associated	Open in IMG/M
3300011271	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4B metaG	Environmental	Open in IMG/M
3300012201	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_40_16 metaG	Environmental	Open in IMG/M
3300012209	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_80_16 metaG	Environmental	Open in IMG/M
3300012911	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S088-202R-2	Environmental	Open in IMG/M
3300012918	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czcobulk3.16 metaG	Environmental	Open in IMG/M
3300012922	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk1.16 metaG	Environmental	Open in IMG/M
3300012923	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaG	Environmental	Open in IMG/M
3300012948	Tropical forest soil microbial communities from Panama - MetaG Plot_14	Environmental	Open in IMG/M
3300012951	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_226_MG	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300013297	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG	Host-Associated	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300016270	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080	Environmental	Open in IMG/M
3300016319	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H	Environmental	Open in IMG/M
3300016341	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170	Environmental	Open in IMG/M
3300016357	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000	Environmental	Open in IMG/M
3300016387	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176	Environmental	Open in IMG/M
3300016422	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111	Environmental	Open in IMG/M
3300018051	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_5_b1	Environmental	Open in IMG/M
3300018055	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_90_coex	Environmental	Open in IMG/M
3300018469	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 320 T	Environmental	Open in IMG/M
3300021086	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300025938	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026041	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026088	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026306	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_102 (SPAdes)	Environmental	Open in IMG/M
3300026314	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_143 (SPAdes)	Environmental	Open in IMG/M
3300026361	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NL-03-B	Environmental	Open in IMG/M
3300027071	Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM1H0_M2 (SPAdes)	Environmental	Open in IMG/M
3300027748	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_149 (SPAdes)	Environmental	Open in IMG/M
3300027874	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio (SPAdes)	Environmental	Open in IMG/M
3300027875	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300028047	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300028710	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_380	Environmental	Open in IMG/M
3300028718	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_194	Environmental	Open in IMG/M
3300028784	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_121	Environmental	Open in IMG/M
3300028793	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_159	Environmental	Open in IMG/M
3300031184	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 13_S	Environmental	Open in IMG/M
3300031543	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f20	Environmental	Open in IMG/M
3300031561	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f26	Environmental	Open in IMG/M
3300031640	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f23	Environmental	Open in IMG/M
3300031681	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f20	Environmental	Open in IMG/M
3300031682	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f22	Environmental	Open in IMG/M
3300031713	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f22	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300031744	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)	Environmental	Open in IMG/M
3300031747	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f22	Environmental	Open in IMG/M
3300031748	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f22	Environmental	Open in IMG/M
3300031751	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f24	Environmental	Open in IMG/M
3300031764	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f27	Environmental	Open in IMG/M
3300031765	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f22	Environmental	Open in IMG/M
3300031793	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f21	Environmental	Open in IMG/M
3300031799	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f21	Environmental	Open in IMG/M
3300031819	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f21	Environmental	Open in IMG/M
3300031835	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f21	Environmental	Open in IMG/M
3300031845	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f18	Environmental	Open in IMG/M
3300031859	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f25	Environmental	Open in IMG/M
3300031893	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f28	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300031959	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f24	Environmental	Open in IMG/M
3300032001	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)	Environmental	Open in IMG/M
3300032013	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D3	Environmental	Open in IMG/M
3300032054	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f23	Environmental	Open in IMG/M
3300032055	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f23	Environmental	Open in IMG/M
3300032059	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f27	Environmental	Open in IMG/M
3300032065	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f20	Environmental	Open in IMG/M
3300032066	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f18	Environmental	Open in IMG/M
3300032076	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)	Environmental	Open in IMG/M
3300032090	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f22	Environmental	Open in IMG/M
3300033290	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f15	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
AF_2010_repII_A1DRAFT_100941571	3300000597	Forest Soil	MQRDTESVDKLKTNGPAPSAVVAGRADRPVDGGASPELYDLLNALQSMR
JGI1027J11758_126141413	3300000789	Soil	MQPNKEPVGELKTNGPSPGAAAAESPDVNGGASPELYDLLNALQSMRVGDFSV
JGI11643J12802_116812701	3300000890	Soil	MQPNREPVGEAKSNGAAPGALPAGAAESQTANGSSAELHDLLSALQSMRVGDFSVRM
JGI24752J21851_10582171	3300001976	Corn, Switchgrass And Miscanthus Rhizosphere	MQPNREPVGDLKTNGASPNAVPAEGQLAGGXPAELHELLNALQSMRVGDFSVRM
JGI24749J21850_10424451	3300002076	Corn, Switchgrass And Miscanthus Rhizosphere	MQPNREPVGDLKTNGASPNAVPAEGQLAGGAPAELHELLNALQSMRVGDFSVRMPGSETG
JGIcombinedJ26739_1009840601	3300002245	Forest Soil	MQPNNEPVGELKANGPSPDAVPAEMPDSRVNGGASPELHDLLNALQSMRVGDFSVRMPG
Ga0062590_1011507811	3300004157	Soil	MQPNREPVGELKTNGASPNAVPAEGQLAGGAPAELHELLNALQSMRVG
Ga0066396_100014352	3300004267	Tropical Forest Soil	MQPNKEPVGELKTNGPSPAATAAESPDVNGGASPELYDLLNALQSMRVGDFS
Ga0062592_1013065111	3300004480	Soil	MQPNREPVGELKTNGASPNAVTAEGQLAGGTPTELHELLNALQSMRVGDFSVRMPGSE
Ga0062591_1014468421	3300004643	Soil	MQPNREPVGELKTNGASPNAVPAEGQLAGGAPAELHELLNALQSMRVGDFSVRMPG
Ga0066680_108276731	3300005174	Soil	MQPNKEPVGELKTNGPSPGAVAAEAPDRHVDGGASPELYE
Ga0066680_108821341	3300005174	Soil	MQPNDEPVGELKANGPSPSAVPAEMPDSRVNGGASPELHDLLNALQSMRV
Ga0066685_104244051	3300005180	Soil	MQPNKEPVGELKTNGPSPGAVAAEAPDRHVDGGASPELYELLNALQSMRVGDFSVRLSGG
Ga0066388_1006717162	3300005332	Tropical Forest Soil	MQRNTEPVDKLKTNGPARSAGVADPADRPVDGGASPELYDLLNALQSMRVGDFSVRL
Ga0066388_1018639142	3300005332	Tropical Forest Soil	MQPKTEPGGDLKTNGPSPGALTAQAPDRHVDGGASPELYDLLNALQSMRVGDFSVR
Ga0066388_1023896132	3300005332	Tropical Forest Soil	MQPSNDPVGELKTNGPAPSAVAAEMPDSRVNGGASPELLDLLN
Ga0070659_1015415061	3300005366	Corn Rhizosphere	MRPNPEPVGEVKTNGPSPGAAAAETADRQADGGASPELYDLLHALQSMRVGDFSVRLAG
Ga0070711_1011863641	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	MQPNREPVGEAKSNGAAPGALPAGAAESQTANGSSAELHDLLSALQSMRVGDFSVRMA
Ga0070694_1001762222	3300005444	Corn, Switchgrass And Miscanthus Rhizosphere	MQPNNEPVGELKANGPSPSAVPAEMPDSRVNGGASPELHDLLN
Ga0066695_105838961	3300005553	Soil	MPRNTEPVGELKTNGPSPSAVAMPDRPIDGGASPELYD
Ga0066654_100870543	3300005587	Soil	MQPNPKALGDLQANGPSPSAVPADAPDDRLNGSAAAPHDLLGALQSMRVGDFSV
Ga0066903_1023549171	3300005764	Tropical Forest Soil	MQPSNDPVGELKTNGPAPSEVAAEMPDSRVNGGASPELLDLLNALQSMRVGDFSVRMSG
Ga0070717_102620661	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	MQPNDEPVGELKANGPSPSAVPAEMPDSRVNGGASPELHDLLNALQSMRVGDFS
Ga0075364_109713582	3300006051	Populus Endosphere	MQPNREPVGELKTNGASPNAVPAEGQLAGAPAELHELLNALQSMRVGDFSVRMPGS
Ga0075018_100076863	3300006172	Watersheds	MQPNRGPVGELKTNGPSPGAVAAEAPDGHVDSGASPELYDLLNALQSMRVGDFSVRLSSGQVG
Ga0074057_121204522	3300006605	Soil	MQPNREPVGDLKTNGASPNAVPAEGQLAGGAPAELHELLNALQSMRVGDFSVRMPGSETGILG
Ga0075420_1016730311	3300006853	Populus Rhizosphere	MPRNTESVGELKTNGPSPSAVAAKMPDRPVDGGASPELY
Ga0075426_106517241	3300006903	Populus Rhizosphere	MRANPEPVGDIKTNGPSPGGVAAETPDRGVDGSTSPELHEL
Ga0075424_1000625111	3300006904	Populus Rhizosphere	MQPNREPVGEAKSNGAAPGALPAGAAESQTANGSSAELHDLLSALQSMRVGDF
Ga0075419_102048262	3300006969	Populus Rhizosphere	MPRNTESVGELKANGPSPSAVAAKMPDRPVDGGASPE
Ga0105241_116713791	3300009174	Corn Rhizosphere	MQPNREPVGEVKTNGASPNAVPAEAQLADGTPVELHELLNALQSMRVGDFSVRMP
Ga0105242_124163721	3300009176	Miscanthus Rhizosphere	MRPNPEPVGEVKTNGPSPGAAAAETADRQADGGASPELYDLLHALQSMRVGDFSVR
Ga0126382_108693981	3300010047	Tropical Forest Soil	MQPNEPVGELKTNGPSPSAVSAEMPDSRVNGGASPELHDLLN
Ga0134084_103915101	3300010322	Grasslands Soil	MRANPEPVGETKTNGPSPGGVAAETPDRRVDGSTSPELYDLLNALQSMRV
Ga0134086_104499751	3300010323	Grasslands Soil	MQPNKEPVGELKTNGPSPGAVAAEAPDRHVDGGASPELYELLNALQSMRVGDFSVRLS
Ga0126376_102670491	3300010359	Tropical Forest Soil	MQPNNDPVGELKTNGPSPSAVPAEMPDSRVNGGASPELLDLLNALQSMRVGDFSV
Ga0126376_120418281	3300010359	Tropical Forest Soil	MQRNTEPVDKLKTNGPARSAGVADPADRPVDGGASPELYDLLN
Ga0126372_120756771	3300010360	Tropical Forest Soil	MRANPEPVGEIKTNGPSPGGVAAETPDRRVDGSTSPELYDLLNALQSMRVGDFSVRLAAGQVGLLGKI
Ga0126379_101952382	3300010366	Tropical Forest Soil	MRANPEPVGEIKTNGPSPGGVAAETPDRRVDGSTSPELYDLL
Ga0126379_110406272	3300010366	Tropical Forest Soil	MQPNNDPVGELKTNGPAPSAVAAEMPDSRVNGGASPELLDLLNA
Ga0126379_115637711	3300010366	Tropical Forest Soil	MQPSNDPVGELKTNGPAPSAVAAEMPDSRVNGGASPELLDLLNA
Ga0126383_105290092	3300010398	Tropical Forest Soil	MQPNNDPVGELKTNGPAPSAAAAEMPDSRVNGGASPELLDLLNALQSMRVGDFSVRMSG
Ga0124850_10796322	3300010863	Tropical Forest Soil	MQPNNDPVGELKTNGPAPSEVAAEMPDSRVNGGASPELLDLLNALQSMRVG
Ga0105246_108310151	3300011119	Miscanthus Rhizosphere	MQPNREPVGELKTNGASPNAVPAEGQIAGGAPAELHELLNALQSMRVGDFSVRMPGSE
Ga0137393_105393911	3300011271	Vadose Zone Soil	MQPSRGPVGELKTNGPSPGAVAAEAPDGHVDSGASPELYD
Ga0137365_100625821	3300012201	Vadose Zone Soil	MPRNPEPVGELKTNRPSPSAVAAQMPGRPIDGGASPELYDLLNALQSMRVGDFS
Ga0137379_102604671	3300012209	Vadose Zone Soil	MQPNKEPVGELKTNGPSPGAVAAEAPDRHVDGGASPELYDLLNVLQSMRVGDFSVRLSGGQMG
Ga0157301_101260031	3300012911	Soil	MQPNREPVGDLKTNGASPNAVPAEGQLAGGAPAELHELLNALQSMRVGD
Ga0137396_107699191	3300012918	Vadose Zone Soil	MQPSRGPVGELKTNGPSPGAVAAEAPDGHVDSGASPELYDLLNALQSMRVGDFSVRL
Ga0137394_107794971	3300012922	Vadose Zone Soil	MQPNSPPVGELKTNGPSPSAVPAEMPDARLDGGSSPELHDL
Ga0137359_117388651	3300012923	Vadose Zone Soil	MQRDTEPAGEPKTNGLSPSTVSADAPDRRVDGGASPELYDLL
Ga0126375_108623732	3300012948	Tropical Forest Soil	MQPNDDPVGELKTNGPAPSEVAAEMPDSRVNGGASPELLDLLNALQSMRVG
Ga0164300_106709521	3300012951	Soil	MRPNPEPVGEVKTNGPSPSAAAAETPDRQADGGASPELYDLLHALQ
Ga0126369_104151601	3300012971	Tropical Forest Soil	MQPNNDPVGELKTNGPAPSEVAAEMPDSRVNGGASPELLDLLNALQSMRVGDFSVRMS
Ga0126369_111467712	3300012971	Tropical Forest Soil	MQPSNDPVGELKTNGPAPSAVAAEMPDSRVNGGASP
Ga0126369_114438651	3300012971	Tropical Forest Soil	MQPNNEPVDELKANGPSPSAVPAEMPDSRVNGGASPELHDLLNALQSMR
Ga0126369_132435651	3300012971	Tropical Forest Soil	MQPNNDPVGELKTNGPAPSAVAAEMPDSRVNGGASPELLDLLNALQSMRVGDFSVRMS
Ga0157378_106746052	3300013297	Miscanthus Rhizosphere	MQPNREPVGDLKTNGASPNAVPAEGQLAGGTPAELHELLNALQSMRVGDFSVRMPGSET
Ga0132258_111576331	3300015371	Arabidopsis Rhizosphere	MQPNRDPVGELRTNGASPNAAAAELPAGQLQDGSSPELHELLNALQSMRV
Ga0132255_1042383811	3300015374	Arabidopsis Rhizosphere	MQPNRDPVGELKTNGASPNAAAAELPAGQLQDGSSPELHELLNALQSMRVGDFSVRMP
Ga0182036_104602481	3300016270	Soil	MQPNNDPVGELKTNGPSPSAVPAEMPDGRVNGGASPELLDLLNALQSMRVGDFSVRMSGS
Ga0182033_109204341	3300016319	Soil	MQPNNEAVDELKANGPSPSAVPAEMPDSRVNGGASPELHDLLNALQSMRVGDFSVRMPG
Ga0182035_109540101	3300016341	Soil	MQPNNEAVDELKANGPSPSAVPAEMPDSRVNGGASPELHDLLNALQSMRVGDFS
Ga0182032_104230651	3300016357	Soil	MQPNNDPVGELKTNGPAPSEVAAEMPDSSVNGGASPELLDLLNALQSMSVGDF
Ga0182032_108168051	3300016357	Soil	MQPNNDPVGELKTNGPSPSAVPAEMPDGRVNGGASPELLDLLNALQSMRVGDFSVRMS
Ga0182040_102577362	3300016387	Soil	MQPNNEPVGELKANGPSPSAVPAEMPDSRVNGGASPELHDLLNALQSMRVGDFSVRMPGNQV
Ga0182039_106468081	3300016422	Soil	MQPNNEAVDELKANGPSPSAVPAEMPDSRVNGGASPELHDLLNALQSMRVGDFSVRMPGN
Ga0184620_102022761	3300018051	Groundwater Sediment	MQPNREPVGELKTNGASPNAVPAEGQLAGGAPAELHELLNALQSMRVGDFSVRMPGSET
Ga0184616_101994692	3300018055	Groundwater Sediment	MQPNREPVGELKTNGASPNAVPAEGQLAGGAPAELHELLNALQSMRVGDFSVRMPGSE
Ga0190270_106587801	3300018469	Soil	MQPNRDPVGELKTNGASPNAGAAELPASQLQDGSSPELHELLNALQSMRVGDFSVRMPGSEVG
Ga0179596_104229501	3300021086	Vadose Zone Soil	MQPNNEPVGELKANGPSPSAVPAEMPDSRVNGGASPELHDLLNALQSMRVGDF
Ga0126371_108942681	3300021560	Tropical Forest Soil	MQPNNDPVGELKTNGPSPSAVPAEMPDSRVNGGASPELLDLLNALQSMRVGDFSVRMSGS
Ga0126371_135334541	3300021560	Tropical Forest Soil	MQPSNDPVGELKTNGPAPSAVAAEMPDSRVNGGASPELLDLL
Ga0207704_108069332	3300025938	Miscanthus Rhizosphere	MQPNREPVGELKTNGASPNAVPAEGQLAGGAPAELHELLNALQSMRVGDF
Ga0207639_106886122	3300026041	Corn Rhizosphere	MQPNREPVGELKTNGASPNAVPAEGQLAGGAPAELHELLNALQSMRVGDFSVRMP
Ga0207641_109734301	3300026088	Switchgrass Rhizosphere	MQPNREPVGDLKTNGASPNAVPAEGQLAGGAPAELHELLNALQSMRVGDF
Ga0209468_10282161	3300026306	Soil	MRANPEPVGETKTNGPSPGGVAAETPDRRVDGSTSPELYDLLNALQSMRVGDFSVRLAGGQVGLL
Ga0209268_11781851	3300026314	Soil	MQPNKEPVGELKTNGPSPGAVAAEAPDRHVDGGASPELYELLNALQSMRVGDFSVRLSGGQM
Ga0257176_10864401	3300026361	Soil	MQPNNEPVGELKANGPSPSAVPAEMPDSRVNGGASPELHDLLNALQSMRVG
Ga0209214_10211932	3300027071	Forest Soil	MQPNNEPVGELKANGPSPSAVPAEMPDSRVNGGASPELH
Ga0209689_10448841	3300027748	Soil	MQPNNEPVGELKANGPSPSAVPAEMPDSRVNGGASPEL
Ga0209465_100504201	3300027874	Tropical Forest Soil	MQPNNDPVGELKTNGPSPSAVPAEIPDSRVNGGASPELLDLLNALQSMRVGDFSVRMSGSQV
Ga0209283_109357841	3300027875	Vadose Zone Soil	MQPNDEPVGELKANGPSPSAVPAEMPDSRVNGGASPELHDLLNALQSMRVG
Ga0209526_104711262	3300028047	Forest Soil	MQPNNEPVGELKANGPSPSAVPAEMPDSRVNGGAS
Ga0307322_100464051	3300028710	Soil	MQPNRDPVGDLKTNGASPNAAAAELPAGQLQDGSSPELHELLNALQSMRVGDFSVRMPGSEVG
Ga0307307_101040421	3300028718	Soil	MQPNREPVGELRTNGASPNAVSAELPAGQPQDGSSAELHDLLNALQSMRVGDFSV
Ga0307282_100123335	3300028784	Soil	MRPNPEPVGETKTNGPSPGAAAAETPDRQADGGASPELYDLLHALQS
Ga0307299_103486221	3300028793	Soil	MRPNPEPVGETKTNGPSPGAAAAETPDRQADGGASPELYDLLHALQSMRVGNFSV
Ga0307499_100967391	3300031184	Soil	MQPNREPVGDLKTNGASPNAVPAEGQLAGGAPAELHELLNALQSMRVGDFSVRMP
Ga0318516_106509841	3300031543	Soil	MQRDTEPVDKLKTNGPAPSAVVADRADRPVDGGASPELYDLLN
Ga0318528_101146352	3300031561	Soil	MQPNNDPVGELKTNGPAPSAVAAEMPDSRVNGGAS
Ga0318528_103426561	3300031561	Soil	MQPNNEPVGELKANGPSPSAVPAEMPDSRVNGGASPELHDLLNALQSMRSLAATISLK
Ga0318555_103497861	3300031640	Soil	MQPNNDPVGELKTNGPAPSAVAAEMPDSRVNGGASPELLDLLNALQSMR
Ga0318572_104997141	3300031681	Soil	MQPNNDPVGELKTNGPAPSAVAAEMPDSRVNGGASPELLD
Ga0318560_106715121	3300031682	Soil	MQPNNEAVDELKANGPSPSAVPAEMPDSRVNGGASPELHDLLN
Ga0318496_100853231	3300031713	Soil	MQPNNDPVGELKTNGPAPSAVAAEMPDSRVNGGSSPELLDLLNALQSMR
Ga0307469_105027802	3300031720	Hardwood Forest Soil	MQPNKEPVGELKTNGPSPGAAAAESPDVNGGASPELYDLLNALQSMRVG
Ga0306918_102771252	3300031744	Soil	MQPNNDPVGELKTNGPAPSAVAAEMPDSRVNGGSSPELLDLLNALQSIRVGDFSVRMSGSQVGLL
Ga0318502_102736331	3300031747	Soil	MQPNNDPVGELKTNGPSPSAVPAEMPDGRVNGGASPELLDLLNALQSMRVGDFSVRMSGSQV
Ga0318492_102969071	3300031748	Soil	MQPNNEAVDELKANGPSPSAVPAEMPDSRVNGGASPELHDLLNALQSMRVGDFSV
Ga0318494_100114321	3300031751	Soil	MQPNNEPVGELKANGPSPSAVPAEMPDSRVNGGASPELHDLLNALQSMRVGDFSVRMPGNQVDLL
Ga0318535_101854651	3300031764	Soil	MQPNNDPVGELKTNGPSPSAVPAEMPDGRVNGGASP
Ga0318554_101840452	3300031765	Soil	MQRDTEPVDKLKTNGPAPSAVVADRADRPVDGGASPELYDLLNALQSMRVGDFSVRLAGG
Ga0318548_100106721	3300031793	Soil	MQPNNEPVDDLKANGPSPSAVPAEMPDSRVNGGASPELHDLLNALQ
Ga0318565_101528911	3300031799	Soil	MQPNNDPVGELKTNGPAPSAVAAEMPDSRVNGGSSPELLDLLN
Ga0318568_101588831	3300031819	Soil	MQPNNDPVGELKTNGPSPSAVPAEMPDGRVNGGASPELLDLLNALQSMRVGDFSVR
Ga0318517_101747841	3300031835	Soil	MQPNNDPVGELKTNGPSPSAVPAEMPDGRVNGGASPELLDLLNALQSMRVG
Ga0318511_104898631	3300031845	Soil	MQPNNEAVDELKANGPSPSAVPAEMPDSRVNGGASPELHDLLNALQSMRVGDF
Ga0318527_100215342	3300031859	Soil	MQPNNDPVGELKTNGPAPSAVAAEMPDSRVNGGASPELLDLLNALQSMRVGDFSVRMSGSQV
Ga0318536_100782252	3300031893	Soil	MQPNNDPVGELKTNGPAPSAVAAEMPDSRVNGGSSPELLDLLNALQS
Ga0306923_109573342	3300031910	Soil	MQPNDEPVGELKANGPSPSAVPAEMPDSRVNGGASPELHDLLN
Ga0318530_101832661	3300031959	Soil	MQPNNDPVGELKTNGPSPSAVPAEIPDSRVNGGASPELLDLLNALQSMRVGDFS
Ga0306922_109674141	3300032001	Soil	MQPNNEPVDDLKANGPSPSAVPAEMPDSRVNGGASPELHDLLNAL
Ga0310906_113530941	3300032013	Soil	MQPNREPVGDLKTNGASPNAVPAEGQLAGGAPAELHELLNALQSMRVGDFSVRMPGSE
Ga0318570_101939801	3300032054	Soil	MQPNDEPVGELKANGPSPSAVPAEMPDSRVNGGASPELHDLLNALQ
Ga0318575_101547511	3300032055	Soil	MQPNNDPVGELKTNGPAPSAVAAEMPDSRVNGGSSPELLDLLNALQSMRVGDFSVRMSGSQV
Ga0318533_101352742	3300032059	Soil	MQPNNDPVGELKTNGPAPSAVAAEMPDSRVNGGASPELLDLLNALQSMRVGDFS
Ga0318533_101358982	3300032059	Soil	MQPNNEPVGELKANGPSPSAVPAEMPDSRVNGGASPELHDLLNALQSMR
Ga0318513_103103741	3300032065	Soil	MQPNNDPVGELKTNGPAPSAVAAEMPDSRVNGGSSPELLDLLNALQSMRVGDF
Ga0318514_100172934	3300032066	Soil	MQPNNDPVGELKTNGPSPSAVPAEIPDSRVNGGASPELLDLLNALQSMRVGDFSVRMSGS
Ga0318514_100541851	3300032066	Soil	MQPNNDPVGELKTNGPAPSAVAAEMPDSRVNGGASPELLDLLNALQSMRVG
Ga0306924_121341851	3300032076	Soil	MQPNDEPVGELKANGPSPSAVPAEMPDSRVNGGASPELHDLLNALQS
Ga0318518_100031141	3300032090	Soil	MQPNNDPVGELKTNGPSPSAVPAEIPDSRVNGGASPELLDLLNALQSMRVGDFSV
Ga0318519_100822701	3300033290	Soil	MQRDTEPVDKLKTNGPAPSAVVADRADRPVDGGASPELYDLLNALQSMR

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F069302

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Hidden Markov Model


Click on a Sequence Logo column to get its information.
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