NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome Family F069253

Metagenome Family F069253

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F069253
Family Type Metagenome
Number of Sequences 124
Average Sequence Length 42 residues
Representative Sequence AGATSFGTGSGSRGSLADLKIVPGHAVMLAAGAVSAETVN
Number of Associated Samples 100
Number of Associated Scaffolds 124

Quality Assessment
Transcriptomic Evidence No
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 0.00 %
% of genes near scaffold ends (potentially truncated) 34.68 %
% of genes from short scaffolds (< 2000 bps) 32.26 %
Associated GOLD sequencing projects 93
AlphaFold2 3D model prediction Yes
3D model pTM-score0.39

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (83.065 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil
(48.387 % of family members)
Environment Ontology (ENVO) Unclassified
(52.419 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
(47.581 % of family members)



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Multiple Sequence Alignments

Select alignment to view:      


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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Fibrous Signal Peptide: No Secondary Structure distribution: α-helix: 4.41%    β-sheet: 19.12%    Coil/Unstructured: 76.47%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.39
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 124 Family Scaffolds
PF05345He_PIG 7.26
PF13683rve_3 3.23
PF00392GntR 2.42
PF01850PIN 2.42
PF01904DUF72 2.42
PF02653BPD_transp_2 2.42
PF13561adh_short_C2 1.61
PF01472PUA 1.61
PF00881Nitroreductase 1.61
PF01152Bac_globin 0.81
PF00293NUDIX 0.81
PF03551PadR 0.81
PF08445FR47 0.81
PF07859Abhydrolase_3 0.81
PF16124RecQ_Zn_bind 0.81
PF01609DDE_Tnp_1 0.81
PF05050Methyltransf_21 0.81
PF13377Peripla_BP_3 0.81
PF00589Phage_integrase 0.81
PF01169UPF0016 0.81
PF04672Methyltransf_19 0.81
PF04952AstE_AspA 0.81
PF08402TOBE_2 0.81
PF03704BTAD 0.81
PF00933Glyco_hydro_3 0.81
PF02687FtsX 0.81
PF07690MFS_1 0.81
PF00441Acyl-CoA_dh_1 0.81
PF00857Isochorismatase 0.81
PF01545Cation_efflux 0.81
PF13490zf-HC2 0.81
PF00300His_Phos_1 0.81

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 124 Family Scaffolds
COG1801Sugar isomerase-related protein YecE, UPF0759/DUF72 familyGeneral function prediction only [R] 2.42
COG0053Divalent metal cation (Fe/Co/Zn/Cd) efflux pumpInorganic ion transport and metabolism [P] 0.81
COG0657Acetyl esterase/lipaseLipid transport and metabolism [I] 0.81
COG1230Co/Zn/Cd efflux system componentInorganic ion transport and metabolism [P] 0.81
COG1335Nicotinamidase-related amidaseCoenzyme transport and metabolism [H] 0.81
COG1472Periplasmic beta-glucosidase and related glycosidasesCarbohydrate transport and metabolism [G] 0.81
COG1535Isochorismate hydrolaseSecondary metabolites biosynthesis, transport and catabolism [Q] 0.81
COG1695DNA-binding transcriptional regulator, PadR familyTranscription [K] 0.81
COG1733DNA-binding transcriptional regulator, HxlR familyTranscription [K] 0.81
COG1846DNA-binding transcriptional regulator, MarR familyTranscription [K] 0.81
COG1960Acyl-CoA dehydrogenase related to the alkylation response protein AidBLipid transport and metabolism [I] 0.81
COG2119Putative Ca2+/H+ antiporter, TMEM165/GDT1 familyGeneral function prediction only [R] 0.81
COG2346Truncated hemoglobin YjbIInorganic ion transport and metabolism [P] 0.81
COG3039Transposase and inactivated derivatives, IS5 familyMobilome: prophages, transposons [X] 0.81
COG3293TransposaseMobilome: prophages, transposons [X] 0.81
COG3385IS4 transposase InsGMobilome: prophages, transposons [X] 0.81
COG3629DNA-binding transcriptional regulator DnrI/AfsR/EmbR, SARP family, contains BTAD domainTranscription [K] 0.81
COG3947Two-component response regulator, SAPR family, consists of REC, wHTH and BTAD domainsTranscription [K] 0.81
COG3965Predicted Co/Zn/Cd cation transporter, cation efflux familyInorganic ion transport and metabolism [P] 0.81
COG5421TransposaseMobilome: prophages, transposons [X] 0.81
COG5433Predicted transposase YbfD/YdcC associated with H repeatsMobilome: prophages, transposons [X] 0.81
COG5659SRSO17 transposaseMobilome: prophages, transposons [X] 0.81


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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
UnclassifiedrootN/A83.06 %
All OrganismsrootAll Organisms16.94 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300004633|Ga0066395_10373295Not Available798Open in IMG/M
3300005444|Ga0070694_101654394Not Available544Open in IMG/M
3300006755|Ga0079222_10213975All Organisms → cellular organisms → Bacteria1173Open in IMG/M
3300009012|Ga0066710_102705443Not Available707Open in IMG/M
3300009525|Ga0116220_10393048Not Available619Open in IMG/M
3300009672|Ga0116215_1041734All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Catenulisporales2096Open in IMG/M
3300009792|Ga0126374_10142848All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1438Open in IMG/M
3300010366|Ga0126379_12749975Not Available588Open in IMG/M
3300010379|Ga0136449_104554647Not Available509Open in IMG/M
3300016270|Ga0182036_10688205All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii826Open in IMG/M
3300016357|Ga0182032_11874257Not Available525Open in IMG/M
3300016404|Ga0182037_11133613Not Available685Open in IMG/M
3300016422|Ga0182039_11699750Not Available577Open in IMG/M
3300016422|Ga0182039_11700428Not Available577Open in IMG/M
3300017970|Ga0187783_11023488Not Available595Open in IMG/M
3300018058|Ga0187766_10379821Not Available931Open in IMG/M
3300018060|Ga0187765_10288057Not Available980Open in IMG/M
3300020579|Ga0210407_11395542Not Available520Open in IMG/M
3300021402|Ga0210385_10226951All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1365Open in IMG/M
3300021407|Ga0210383_10616696All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia935Open in IMG/M
3300021475|Ga0210392_10493890All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Catenulisporales901Open in IMG/M
3300025915|Ga0207693_11321331Not Available539Open in IMG/M
3300026538|Ga0209056_10348788Not Available974Open in IMG/M
3300027874|Ga0209465_10377198Not Available710Open in IMG/M
3300027884|Ga0209275_10640180Not Available611Open in IMG/M
3300027889|Ga0209380_10324279All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria904Open in IMG/M
3300027911|Ga0209698_11151783All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → unclassified Planctomycetaceae → Planctomycetaceae bacterium SCGC AG-212-F19573Open in IMG/M
3300028906|Ga0308309_11278661Not Available631Open in IMG/M
3300031680|Ga0318574_10028019All Organisms → cellular organisms → Bacteria → Terrabacteria group2820Open in IMG/M
3300031682|Ga0318560_10420832Not Available723Open in IMG/M
3300031708|Ga0310686_103343025All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria6276Open in IMG/M
3300031720|Ga0307469_10119005All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Catenulisporales1906Open in IMG/M
3300031751|Ga0318494_10359512Not Available843Open in IMG/M
3300031771|Ga0318546_10314789All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia1085Open in IMG/M
3300031897|Ga0318520_10783067All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → Streptomyces atratus598Open in IMG/M
3300031912|Ga0306921_10844582All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Actinocrispum → Actinocrispum wychmicini1043Open in IMG/M
3300031941|Ga0310912_11416809All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia524Open in IMG/M
3300031946|Ga0310910_10526091All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria939Open in IMG/M
3300032041|Ga0318549_10140573All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1071Open in IMG/M
3300032060|Ga0318505_10463008All Organisms → cellular organisms → Bacteria599Open in IMG/M
3300032094|Ga0318540_10335575Not Available730Open in IMG/M
3300033289|Ga0310914_11626150All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia550Open in IMG/M
3300034163|Ga0370515_0166003All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Catenulisporales945Open in IMG/M



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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil48.39%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil10.48%
Tropical PeatlandEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland8.06%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere6.45%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil5.65%
SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Soil4.03%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil2.42%
Peatlands SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil2.42%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil2.42%
Hardwood Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil1.61%
SedimentEnvironmental → Aquatic → Thermal Springs → Hot (42-90C) → Sediment → Sediment0.81%
WatershedsEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds0.81%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil0.81%
Surface SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil0.81%
Agricultural SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil0.81%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Soil0.81%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil0.81%
Untreated Peat SoilEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil0.81%
BogEnvironmental → Terrestrial → Soil → Wetlands → Permafrost → Bog0.81%
PalsaEnvironmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa0.81%

Visualization
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Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
2199352025Soil microbial communities from Rothamsted, UK, for project Deep Soil - DEEP SOILEnvironmentalOpen in IMG/M
3300004633Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBioEnvironmentalOpen in IMG/M
3300005434Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaGEnvironmentalOpen in IMG/M
3300005436Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaGEnvironmentalOpen in IMG/M
3300005444Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaGEnvironmentalOpen in IMG/M
3300005534Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen07_05102014_R1EnvironmentalOpen in IMG/M
3300005610Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3EnvironmentalOpen in IMG/M
3300005921Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6EnvironmentalOpen in IMG/M
3300006173Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaGEnvironmentalOpen in IMG/M
3300006755Agricultural soil microbial communities from Georgia to study Nitrogen management - GA PlitterEnvironmentalOpen in IMG/M
3300009012Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159EnvironmentalOpen in IMG/M
3300009525Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_7_NC metaGEnvironmentalOpen in IMG/M
3300009672Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_2_FS metaGEnvironmentalOpen in IMG/M
3300009792Tropical forest soil microbial communities from Panama - MetaG Plot_12EnvironmentalOpen in IMG/M
3300010359Tropical forest soil microbial communities from Panama - MetaG Plot_15EnvironmentalOpen in IMG/M
3300010366Tropical forest soil microbial communities from Panama - MetaG Plot_24EnvironmentalOpen in IMG/M
3300010376Tropical forest soil microbial communities from Panama - MetaG Plot_28EnvironmentalOpen in IMG/M
3300010379Sb_50d combined assemblyEnvironmentalOpen in IMG/M
3300010937Fumarole sediment microbial communities, Furnas, Sao Miguel, Azores. Combined Assembly of Gp0156138, Gp0156139EnvironmentalOpen in IMG/M
3300014838Permafrost microbial communities from Stordalen Mire, Sweden - 812S3M metaG (Illumina Assembly)EnvironmentalOpen in IMG/M
3300016270Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080EnvironmentalOpen in IMG/M
3300016319Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00HEnvironmentalOpen in IMG/M
3300016341Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170EnvironmentalOpen in IMG/M
3300016357Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000EnvironmentalOpen in IMG/M
3300016371Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172EnvironmentalOpen in IMG/M
3300016404Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082EnvironmentalOpen in IMG/M
3300016422Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111EnvironmentalOpen in IMG/M
3300017961Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP5_20_MGEnvironmentalOpen in IMG/M
3300017970Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_SJ02_MP02_20_MGEnvironmentalOpen in IMG/M
3300017973Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP10_20_MGEnvironmentalOpen in IMG/M
3300017974Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP5_10_MGEnvironmentalOpen in IMG/M
3300018058Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP05_20_MGEnvironmentalOpen in IMG/M
3300018060Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP05_10_MGEnvironmentalOpen in IMG/M
3300018089Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP05_20_MGEnvironmentalOpen in IMG/M
3300020579Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-MEnvironmentalOpen in IMG/M
3300021401Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-OEnvironmentalOpen in IMG/M
3300021402Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-OEnvironmentalOpen in IMG/M
3300021407Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-OEnvironmentalOpen in IMG/M
3300021475Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-OEnvironmentalOpen in IMG/M
3300021478Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-MEnvironmentalOpen in IMG/M
3300021559Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-MEnvironmentalOpen in IMG/M
3300021560Tropical forest soil microbial communities from Panama - MetaG Plot_4EnvironmentalOpen in IMG/M
3300025906Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025915Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025928Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300026498Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NI-49-AEnvironmentalOpen in IMG/M
3300026538Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114 (SPAdes)EnvironmentalOpen in IMG/M
3300027874Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio (SPAdes)EnvironmentalOpen in IMG/M
3300027884Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2 (SPAdes)EnvironmentalOpen in IMG/M
3300027889Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6 (SPAdes)EnvironmentalOpen in IMG/M
3300027911Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2012 (SPAdes)EnvironmentalOpen in IMG/M
3300028906Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5 (v2)EnvironmentalOpen in IMG/M
3300030399II_Palsa_E2 coassemblyEnvironmentalOpen in IMG/M
3300031543Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f20EnvironmentalOpen in IMG/M
3300031544Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f26EnvironmentalOpen in IMG/M
3300031561Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f26EnvironmentalOpen in IMG/M
3300031572Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f19EnvironmentalOpen in IMG/M
3300031640Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f23EnvironmentalOpen in IMG/M
3300031668Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f23EnvironmentalOpen in IMG/M
3300031680Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f22EnvironmentalOpen in IMG/M
3300031682Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f22EnvironmentalOpen in IMG/M
3300031708FICUS49499 Metagenome Czech Republic combined assemblyEnvironmentalOpen in IMG/M
3300031713Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f22EnvironmentalOpen in IMG/M
3300031719Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2)EnvironmentalOpen in IMG/M
3300031720Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515EnvironmentalOpen in IMG/M
3300031723Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f23EnvironmentalOpen in IMG/M
3300031724Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f20EnvironmentalOpen in IMG/M
3300031736Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f21EnvironmentalOpen in IMG/M
3300031751Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f24EnvironmentalOpen in IMG/M
3300031770Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f17EnvironmentalOpen in IMG/M
3300031771Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f19EnvironmentalOpen in IMG/M
3300031777Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f24EnvironmentalOpen in IMG/M
3300031792Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f23EnvironmentalOpen in IMG/M
3300031793Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f21EnvironmentalOpen in IMG/M
3300031797Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f23EnvironmentalOpen in IMG/M
3300031805Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f23EnvironmentalOpen in IMG/M
3300031846Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f19EnvironmentalOpen in IMG/M
3300031859Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f25EnvironmentalOpen in IMG/M
3300031879Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2)EnvironmentalOpen in IMG/M
3300031893Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f28EnvironmentalOpen in IMG/M
3300031897Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f16EnvironmentalOpen in IMG/M
3300031912Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)EnvironmentalOpen in IMG/M
3300031941Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX080EnvironmentalOpen in IMG/M
3300031945Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX082EnvironmentalOpen in IMG/M
3300031946Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF172EnvironmentalOpen in IMG/M
3300031947Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.T000HEnvironmentalOpen in IMG/M
3300032009Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f19EnvironmentalOpen in IMG/M
3300032010Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f22EnvironmentalOpen in IMG/M
3300032039Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f21EnvironmentalOpen in IMG/M
3300032041Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f22EnvironmentalOpen in IMG/M
3300032052Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f19EnvironmentalOpen in IMG/M
3300032060Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f18EnvironmentalOpen in IMG/M
3300032067Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f22EnvironmentalOpen in IMG/M
3300032068Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f21EnvironmentalOpen in IMG/M
3300032090Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f22EnvironmentalOpen in IMG/M
3300032091Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f25EnvironmentalOpen in IMG/M
3300032094Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f25EnvironmentalOpen in IMG/M
3300032180Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515EnvironmentalOpen in IMG/M
3300033289Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN108EnvironmentalOpen in IMG/M
3300034163Peat soil microbial communities from wetlands in Alaska, United States - Goldstream_04D_14EnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
deepsgr_010777302199352025SoilAGATSLGTGTGLRGSLADLQIAPGLAVMLAAGAVSAEAVS
Ga0066395_1037329513300004633Tropical Forest SoilSGGNAFTFGAGATGFGTGSGSRGSLGDLKIVPGRAVMLAAGAVSAETVT*
Ga0066395_1092476423300004633Tropical Forest SoilGATSFGAGSGSRGSLADLKIVPGLAVMLAAGAVSAETVT*
Ga0070709_1036476313300005434Corn, Switchgrass And Miscanthus RhizosphereGATSFGTGSGSRGSLADLKIVPGHAVMLAAGAISAEAVS*
Ga0070709_1149954713300005434Corn, Switchgrass And Miscanthus RhizosphereAGATSFGTGSGSRGSLADLKIVPGHAVMLAAGAISAEAAS*
Ga0070713_10194472523300005436Corn, Switchgrass And Miscanthus RhizosphereSAGATSFGTGSGSRGSLADLKIVPGHAVMLAAGAISAEAAS*
Ga0070694_10165439423300005444Corn, Switchgrass And Miscanthus RhizosphereSGGNAFTFSAGATSFGTGSGSRGSLADLKIVPGHAVMLAAGAISAEAVS*
Ga0070735_1090443823300005534Surface SoilSFGTGSGSHGSLGDLKIVPGQAVMLASDAVSTEPVS*
Ga0070763_1082547813300005610SoilAGATSFGTGSGSHTSLADLKIVPGQAVLLAADAVSAEPVS*
Ga0070766_1027910643300005921SoilTAGATSFGTGSGSHTSLADLKIVPGQAVLLAADAVSAEPVS*
Ga0070716_10052279323300006173Corn, Switchgrass And Miscanthus RhizosphereTSFGTGSGSRGSLADLKIVPGHAVMLAAGAISAEAVS*
Ga0079222_1021397513300006755Agricultural SoilGGNAFTFAAGATSFGIGSGSRGSLADLKIVPGHAVLLAAGAVSAEAVS*
Ga0066710_10270544313300009012Grasslands SoilNAFTFAAGATSFGTGSGSRGGLGDLKVAPGLAVMLAAGAVSTKPVT
Ga0116220_1039304823300009525Peatlands SoilADSGGNAFTFAAGATSFGTGSGSRGSLGDLKIVPGRAVMLAANAVSPRP*
Ga0116215_104173413300009672Peatlands SoilGNAFTFAAGATSFGTGSGSRGSLGDLKIVPGRAVLLAANAVSTETVN*
Ga0126374_1014284833300009792Tropical Forest SoilGDAFTFGAGATGFGADSGSRGSLADLKIVPGHAVMLAAGAVSAEAVS*
Ga0126376_1108354423300010359Tropical Forest SoilVNKTGAMAAGATSFGTGSGSRGSLADLKIVPGHAVMLASGAVSAETVN*
Ga0126379_1182848513300010366Tropical Forest SoilAGATSFGTGSGSHTSLADVKIVPGRAVMLAADAISAESVS*
Ga0126379_1274997523300010366Tropical Forest SoilGGNAFTFGAGATSFGTGSGSRGSLADLKIVPGHAVMLAAVAVSAETVN*
Ga0126381_10090878823300010376Tropical Forest SoilVNKTGAMAAGATSFGAGSGSRGSLADLKIVPGHAVMLASGAVSAETVN*
Ga0126381_10302431223300010376Tropical Forest SoilATAFGPGSGSRGSLDDLKIVPGRAVMLAAGAVSAEAVS*
Ga0136449_10455464713300010379Peatlands SoilGNAFTFAAGATSFGTGSGSRGSLGDLKIVPGRAVMLAANAVSTETVN*
Ga0137776_114470013300010937SedimentFTFPAGASSFGTGSGSRGSLADLKIVPGRAVMLAAGAVSAEAVK*
Ga0182030_1046524613300014838BogTAGATSFGTGSGSHTSLGDLKIVPGQAVMLASDAVSAEPVS*
Ga0182036_1068820523300016270SoilDSGADAFTFGAGAASFGPGSGSRGSLADLKIVPGLAVMLATGAVSAETVS
Ga0182033_1200383913300016319SoilDATSFGTGSGSRGSLADLKIVPGHAVMLAAGAVSAEAVS
Ga0182035_1150887213300016341SoilAFTFAAGATSFGAGSGSRGSLGDLKIVPGRAVMLAAGAVSTEAVS
Ga0182032_1081774313300016357SoilAFTFAAGATSFGTGSGSRGSLADLKIVPGHAVMLAAGAVSAETVN
Ga0182032_1119310923300016357SoilASFGPGSGSRGSLADLKIAPGIAVMLATGAVSAETVN
Ga0182032_1187425713300016357SoilNAFTFAAGAASFGAGSGSRGSLGDLKIVPGRAVMLAASAVSTQTVT
Ga0182034_1048783013300016371SoilTFSAGAASFGPGSGSRGSLADLKIVPGLAVMLAAGAVSAEAVS
Ga0182037_1113361313300016404SoilATAFGTGSGSRGSLDDLKIVPGHAAMLAGGAVSAEPVS
Ga0182039_1169975023300016422SoilADATGNAFTFTAAATSFGTGSGPHTSLADLKIVPGHAVLLAADAVSAEPVR
Ga0182039_1170042813300016422SoilDSSGNAFTFAAGAASFGTGSGSRGSVGDLKIVPGRAVMLAAGAVSTETVN
Ga0187778_1058433423300017961Tropical PeatlandFGTGSGSHTSLADLKIVPGRAVMLAADAVSAESVS
Ga0187783_1102348813300017970Tropical PeatlandFTFTAGATSFGTGSGSLGSLAGLTIAPGHAVMLTANGVSTEPVS
Ga0187780_1042279413300017973Tropical PeatlandGAASFGTGSGSRGSLADLKIVPGRAVMLVADAVSAETVN
Ga0187777_1114281213300017974Tropical PeatlandATSFGTGSGSHTSLADLKIVPGHAVMLAADAVSAESVN
Ga0187766_1011694713300018058Tropical PeatlandSFGTGSGSHTSLADLKIVPGRAVMLAADAVSAESVS
Ga0187766_1037982123300018058Tropical PeatlandNAFTFTAGATSFGTGSGSHTSLGDLKIVPGQAVLLAADAVSAEPVS
Ga0187766_1044271913300018058Tropical PeatlandTAGAASFGAGSGSHTSLADLKIVPGHAVMLAADAVSAETVN
Ga0187765_1006400233300018060Tropical PeatlandTSFGTGSGSHTSLADLKIVPGHAVMLAANAISAEPVS
Ga0187765_1028805713300018060Tropical PeatlandTTGNAFTFTAGATSFGTGSGSHTSLADLKIVPGHAVMLAADAVSAESVS
Ga0187774_1088178513300018089Tropical PeatlandFTFTAGATSFGAGSGSRGSLADLKIVPGRAVMLAAGAISAEAVS
Ga0210407_1139554213300020579SoilDSGGNAFTFAVGATSFGTGSGSRGSLADLKIVPGHAVMLAAGAISAEAVS
Ga0210393_1133173613300021401SoilTFGAGAVGFGSGSGSRGSLDDLKIVPGRAVMLAAGAVSAEAVS
Ga0210385_1022695113300021402SoilSGDAFTFSAGATSFGTGSGSLGSLGGLKIVPGHAVMLASDAISTEPVS
Ga0210383_1061669623300021407SoilATSFGTGSGSLGSLGGLKIVPGKAVLLAGDAVYTEPVS
Ga0210392_1049389013300021475SoilSGGNAFTFAAGATSFGTGSGSRGSLADLKIVPGRAAMLAANAVSTETAN
Ga0210402_1037023713300021478SoilFGTGSGSRGSLADLKIVPGRAVMLAAGAVSAETVN
Ga0210409_1095156823300021559SoilTSFGAGSGSRGSLADLKIVPGHAVMLAAGAVSAQTVS
Ga0126371_1382568613300021560Tropical Forest SoilFGAGAASFGPAGGSRGSPADLKIVPGLALMLATGAVSAETAS
Ga0207699_1031899423300025906Corn, Switchgrass And Miscanthus RhizosphereAFTFTAGATSFGTGSGSHTSLGDLKIVPGRAVLLAADAVSAEPVS
Ga0207693_1132133123300025915Corn, Switchgrass And Miscanthus RhizosphereDSGGNAFTFAAGATSFGTGSGSRGSLADLKIVPGHAVMLAAGAVSAEAVS
Ga0207700_1189923513300025928Corn, Switchgrass And Miscanthus RhizosphereGATSFGAGSGSRGSLADLKIVPGHAVMLAAGAVSAEAVS
Ga0257156_109714023300026498SoilAFTFAAGATSFGTGSGSRGSLADLKIVPGRAAMLAAGAVSAEAVS
Ga0209056_1034878813300026538SoilDSGGNAFTFAAGVTSFGTGSGSRGSLDDLKIVPGHAVMLAAGTVSAETVN
Ga0209465_1037719813300027874Tropical Forest SoilSGGNAFTFGAGATGFGTGSGSRGSLGDLKIVPGRAVMLAAGAVSAETVT
Ga0209275_1064018013300027884SoilAFTFSAGATSFGTGSGSLGSLADLKIVPGQAVMLAGDAVSAEPVS
Ga0209380_1032427913300027889SoilTTGNAFTFTAGATSFGTGSGSHTSLADLKIVPGQAVLLAADAVSAEPVS
Ga0209698_1115178313300027911WatershedsDSTGNAFTFTAGATSFGTGSGSHTSLADLKIVPGQAVMLAADAISAEPVS
Ga0308309_1127866123300028906SoilNAFTFTAGAASFGTGSGSHTSLGDLKIVPGQAVLLAADAVSAEPVS
Ga0311353_1038615413300030399PalsaTFTAGATSFGTGSGSHTSLADLKIVPGQAVLLAADAVSAEPVS
Ga0318516_1036987613300031543SoilTSFGTGSGSRGSLADLKIVPGHAVMLAAGAVSAETVN
Ga0318534_1050259723300031544SoilLEDWAASTAFTFGAGAASFGPGSGPRGSLADLKIVPGLAVMLAAGAVSAQAVT
Ga0318534_1083024023300031544SoilFAAGATSFGTGSGSRGSLGDLKIVPGRAVMLAAGAVSTEAVS
Ga0318528_1079247223300031561SoilAAGATSFGTGSGSRGSLGDLKIVPGRAVMLAAGAVSTQTVT
Ga0318515_1046974123300031572SoilATSFGAGSGSRGSLGDLKIVPGRAVMLAAGAVSTEAVS
Ga0318555_1048253523300031640SoilFGTGSGPRGTLADLKIVPGLAVMLAAGGVSAEAVT
Ga0318542_1019055913300031668SoilVHGLGRDGPGSGSRGSLADLKIVPGRAVMLAAGAVSTETVN
Ga0318574_1002801913300031680SoilATAFGTGSGSRGSLDDLKIVPGHAVMLAGGAVSAEPVS
Ga0318574_1087903013300031680SoilAGATSFGTGSGSRGSLADLKIVPGHAVMLAADAVSAETVN
Ga0318560_1030425723300031682SoilFGAGSGSRGSLADLKIVPGHAVMLAAGAVSAETVN
Ga0318560_1042083223300031682SoilAFTFGAGATAFGTGSGSRGSLDDLKIVPGHAVMLAGGAVSAEPVS
Ga0310686_10334302513300031708SoilTGNAFTFTAGATSFGTGSGSHTSLGGLKIVPGQAVLLASDAVSAEPVS
Ga0310686_11090721443300031708SoilFTFTAGATSFGTGSGSHTSLADLKIVPGQAVMLAANAVSAEPVS
Ga0310686_11233450513300031708SoilTFTAGATSFGTGSGSHGGLADLKIVPGQAVLLAADAVSAEPVS
Ga0318496_1032993723300031713SoilAAGVTSFGAGSGSRGSLGDLKIVPGRVVMLAANAVSTETVT
Ga0318496_1080653123300031713SoilGNAFTFAADATSFGTGSGSRGSLADLKIVPGHAVMLAAGAVSAEAVS
Ga0306917_1128222313300031719SoilFAAGATSFGAGSGSRGSLADLKIVPGLAVMLAAGAVSAETVT
Ga0307469_1011900543300031720Hardwood Forest SoilAGATGFGTGSGSRGSLADLKIVPGHAAMLAAGAISAEAVS
Ga0318493_1079064113300031723SoilGATSFGAGSGSRGSLADLKIVPGLAVMLAAGAVSAETVN
Ga0318500_1019957413300031724SoilTSFGAGSGSRGSLDDLKIVPGQAVMLAAGAMSAESVT
Ga0318501_1018584713300031736SoilNAFTFAAGAASFGTGSGSRGSLDDLKIAPGRAAMLAAGAVSAETVN
Ga0318494_1035951223300031751SoilGGNAFTFAAGATSFGTGSGSRGSLADLKIVPGHAVMLAAGAVSAETVN
Ga0318521_1014803333300031770SoilFGAGSGSRGSLADLKIVPGLAVMLAAGAVSAETVN
Ga0318546_1031478923300031771SoilADSGGTAFTFGAGAASFGPGSGPRGSLADLKIVPGLAVMLAAGAVSAQAVT
Ga0318546_1085035013300031771SoilASFGAGSGSRGSLDDLKIVPGRAVLLAAGAVSTETVT
Ga0318543_1015801423300031777SoilTAFGTGSGSRGSLDDLKIVPGHAVMLAGGAVSAEPVS
Ga0318529_1023681513300031792SoilTFAAGVTSFGAGSGSRGSLGDLKIVPGRVVMLAANAVSTETVT
Ga0318548_1028624413300031793SoilASFGPGSGSRGSLADLKIVPGQAVMLAAGAVSAEAVS
Ga0318550_1045351723300031797SoilAGATSFGAGSGSRGSLGDLKIVPGRAVMLAAGAVSTEAVS
Ga0318497_1023246023300031805SoilFTFAAGAASFGAGSGSRGSLGDLKIVPGQAVMLAADAVSAETVT
Ga0318497_1041384523300031805SoilFGAGSGSRGSLADLKIVPGLAVMLAAGAVSAETVT
Ga0318512_1055368723300031846SoilSFGAGSGSRGSLGDLKIVPGRAVLLAAGAVSTETVT
Ga0318527_1016295623300031859SoilTFSAGAASFGAGSGPRGSLGDLKIVPGRAVMLAAGAVSTETVT
Ga0318527_1019812623300031859SoilFTFGAGATAFGTGSGSRGSLDDLKIVPGHAVMLAGGAVSAEPVS
Ga0306919_1023198213300031879SoilSFGAGSGSRGSLDDLKIVPGQAVMLAAGAMSAESVT
Ga0318536_1065601423300031893SoilFGTGSGSRGSLADLKIVPGHAVMLAADAVSAETVN
Ga0318520_1000245813300031897SoilAASFGTGSGSRGSLDDLKIAPGRAVMLAAGAVSAETVN
Ga0318520_1005663043300031897SoilSFGAGSGSRGSLADLKIVPGLAVMLAAGAVSAETVN
Ga0318520_1078306733300031897SoilAFTFGAGAASFGPGSGPRGSLADLKIVPGLAVMLAAGAVSAQAVT
Ga0318520_1096467913300031897SoilGGYGAASFGTGSGSRGSLADLKIIPGRAVMLAVGAVSTETVT
Ga0306921_1084458233300031912SoilFTFAAGASSFGVGSGSRGSLADLKIVPGLAVMLAAGAVSAETVT
Ga0310912_1141680923300031941SoilSGGNAFTFAAGATSFGVGSGSRGSLADLKIVPGLAVMLAAGAVSAEAVS
Ga0310913_1082244323300031945SoilAGAASFGTGSGSRGSLADLKIVPGLAVMLAAGAVSAETVT
Ga0310910_1052609113300031946SoilSGADAFTFGAGAASFGPGSGSRGSLADLKIAPGIAVMLATGAVSAETVN
Ga0310909_1098938413300031947SoilFTFGAGAASFGPGSESRGSLADLKIVPGLAVMLAAGAVSAEAVS
Ga0318563_1060554813300032009SoilFGAGSGSRGSLGDLKIVPGQAVMLAADAVSAETVN
Ga0318569_1010672423300032010SoilAAGATSFGVGSGSRGSLADLKIVPGLAVMLAAGAVSAEAVS
Ga0318559_1024207723300032039SoilFGAGAASFGIGSGPRGSLADLKIVPGLAVMLAAGAVSAQAVT
Ga0318549_1014057333300032041SoilGNAFTFAAGATSFGAGSGSRGSLADLKIVPGLAVMLAAGAVSAETVN
Ga0318549_1034798713300032041SoilTFGAGATSFGTGSGPRGTLADLKIVPGLAVMLAAGGVSAEAVT
Ga0318506_1018109323300032052SoilAGATSFGTGSGSRGSLADLKIVPGHAVMLAAGAVSAETVN
Ga0318505_1046300813300032060SoilAFTFGAGATAFGPGSGSRGSLDDLKIVPGRAVMLAGGAVSTEPVS
Ga0318524_1045805613300032067SoilDVFTFGAGAASFGPGSGSRGSLADLKIVPGLAVMLATGAVSAETVS
Ga0318553_1011257013300032068SoilAVATELEDWAASTAFTFGAGAASFGPGSGPRGSLADLKIVPGLAVMLAAGAVSAQAVT
Ga0318518_1023808523300032090SoilATSFGAGSGSRGSLADLKIVPGHAVMLAGDAVSAQTVN
Ga0318577_1025367813300032091SoilAGATSFGAGSGSRGSLADLKIVPGHAVMLAADAVSAQTVN
Ga0318577_1064430813300032091SoilSFGTGSGSRGSLADLKIVPGHAVMLAADAVSAETVN
Ga0318540_1033557523300032094SoilAGATAFGTGSGSRGSLDDLKIVPGHAVMLAGGAVSAEPVS
Ga0307471_10175734823300032180Hardwood Forest SoilFGTGSGSRGSLADLKIVPGHAAMLAAGAISAEAVS
Ga0310914_1162615023300033289SoilGADAFTFGAGAVSFGPGSGSRGSLADLKIAPGIAVMLATGTVSAEPVN
Ga0370515_0166003_1_1563300034163Untreated Peat SoilADTTGNAFTFTAGATSFGTGSGSHTSLGDLKIVPGQAVLLAADAVSAEPVS


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