Metagenome / Metatranscriptome Family F069164

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F069164
Family Type	Metagenome / Metatranscriptome
Number of Sequences	124
Average Sequence Length	63 residues
Representative Sequence	VRRGRPARLALRIAAAAAVSIGVALVAGARPATPALITGVLTWLALTARHDLAPPG
Number of Associated Samples	100
Number of Associated Scaffolds	124

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	9.17 %
% of genes near scaffold ends (potentially truncated)	79.84 %
% of genes from short scaffolds (< 2000 bps)	91.13 %
Associated GOLD sequencing projects	97
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.47

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (58.065 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (41.129 % of family members)
Environment Ontology (ENVO)	Unclassified (44.355 % of family members)
Earth Microbiome Project Ontology (EMPO)	Unclassified (45.968 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Fibrous	Signal Peptide:	Yes	Secondary Structure distribution:	α-helix: 51.19% β-sheet: 0.00% Coil/Unstructured: 48.81%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.47
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.47
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 124 Family Scaffolds
PF00903	Glyoxalase	9.68
PF00581	Rhodanese	7.26
PF01663	Phosphodiest	4.03
PF00201	UDPGT	0.81
PF13418	Kelch_4	0.81
PF04542	Sigma70_r2	0.81
PF00005	ABC_tran	0.81
PF06412	TraD	0.81
PF00722	Glyco_hydro_16	0.81
PF01230	HIT	0.81
PF00226	DnaJ	0.81

COG ID	Name	Functional Category	% Frequency in 124 Family Scaffolds
COG1819	UDP:flavonoid glycosyltransferase YjiC, YdhE family	Carbohydrate transport and metabolism [G]	1.61
COG0568	DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)	Transcription [K]	0.81
COG1191	DNA-directed RNA polymerase specialized sigma subunit	Transcription [K]	0.81
COG1595	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	Transcription [K]	0.81
COG2273	Beta-glucanase, GH16 family	Carbohydrate transport and metabolism [G]	0.81
COG4941	Predicted RNA polymerase sigma factor, contains C-terminal TPR domain	Transcription [K]	0.81

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	58.06 %
All Organisms	root	All Organisms	41.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	58.06 %
cellular organisms	root	All Organisms → cellular organisms	41.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	58.06 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	41.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	58.06 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	35.48 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.81 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	58.06 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	32.26 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.81 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.81 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	58.06 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	24.19 %
Ktedonobacteria	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Ktedonobacteria	0.81 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.81 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	58.06 %
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	12.90 %
Streptosporangiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	2.42 %
Micrococcales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales	1.61 %
Corynebacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales	0.81 %
Ktedonobacterales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Ktedonobacteria → Ktedonobacterales	0.81 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.81 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	58.06 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	12.90 %
Treboniaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae	2.42 %
Sanguibacteraceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Sanguibacteraceae	1.61 %
Mycobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae	0.81 %
Ktedonobacteraceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Ktedonobacteria → Ktedonobacterales → Ktedonobacteraceae	0.81 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.81 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	58.06 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	12.90 %
Trebonia	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia	2.42 %
Sanguibacter	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Sanguibacteraceae → Sanguibacter	1.61 %
Ktedonobacter	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Ktedonobacteria → Ktedonobacterales → Ktedonobacteraceae → Ktedonobacter	0.81 %
Mycolicibacterium	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycolicibacterium	0.81 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.81 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	58.06 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	12.90 %
Trebonia kvetii	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	2.42 %
Sanguibacter antarcticus	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Sanguibacteraceae → Sanguibacter → Sanguibacter antarcticus	1.61 %
Ktedonobacter	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Ktedonobacteria → Ktedonobacterales → Ktedonobacteraceae → Ktedonobacter	0.81 %
Mycolicibacterium	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycolicibacterium	0.81 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.81 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000956\|JGI10216J12902_100921030	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	757	Open in IMG/M
3300000956\|JGI10216J12902_106287704	Not Available	518	Open in IMG/M
3300005181\|Ga0066678_11079819	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	517	Open in IMG/M
3300005332\|Ga0066388_103168174	Not Available	841	Open in IMG/M
3300005332\|Ga0066388_107893170	Not Available	532	Open in IMG/M
3300005336\|Ga0070680_101284722	Not Available	633	Open in IMG/M
3300005435\|Ga0070714_101188801	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	744	Open in IMG/M
3300005436\|Ga0070713_100560207	Not Available	1083	Open in IMG/M
3300005445\|Ga0070708_101441189	Not Available	642	Open in IMG/M
3300005446\|Ga0066686_10937173	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	566	Open in IMG/M
3300005537\|Ga0070730_10322114	Not Available	1009	Open in IMG/M
3300005587\|Ga0066654_10744307	Not Available	552	Open in IMG/M
3300005598\|Ga0066706_10972186	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	656	Open in IMG/M
3300005764\|Ga0066903_102191302	Not Available	1065	Open in IMG/M
3300006028\|Ga0070717_11929879	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	533	Open in IMG/M
3300006046\|Ga0066652_100151921	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1943	Open in IMG/M
3300006059\|Ga0075017_100775533	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	740	Open in IMG/M
3300006175\|Ga0070712_100261561	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1387	Open in IMG/M
3300006804\|Ga0079221_10194015	Not Available	1106	Open in IMG/M
3300009093\|Ga0105240_10468542	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1406	Open in IMG/M
3300009137\|Ga0066709_100824887	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1346	Open in IMG/M
3300009137\|Ga0066709_103710873	Not Available	554	Open in IMG/M
3300009174\|Ga0105241_11905284	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Sanguibacteraceae → Sanguibacter → Sanguibacter antarcticus	583	Open in IMG/M
3300010047\|Ga0126382_11704632	Not Available	589	Open in IMG/M
3300010048\|Ga0126373_13301210	Not Available	502	Open in IMG/M
3300010154\|Ga0127503_10383281	Not Available	793	Open in IMG/M
3300010335\|Ga0134063_10072262	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	1536	Open in IMG/M
3300010358\|Ga0126370_12251645	Not Available	538	Open in IMG/M
3300010360\|Ga0126372_10591754	Not Available	1062	Open in IMG/M
3300010361\|Ga0126378_10116795	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2664	Open in IMG/M
3300010361\|Ga0126378_12757370	Not Available	561	Open in IMG/M
3300010362\|Ga0126377_12685981	Not Available	573	Open in IMG/M
3300010376\|Ga0126381_100686565	Not Available	1463	Open in IMG/M
3300010376\|Ga0126381_102520737	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	737	Open in IMG/M
3300010396\|Ga0134126_12995001	All Organisms → cellular organisms → Bacteria	510	Open in IMG/M
3300010398\|Ga0126383_10004589	All Organisms → cellular organisms → Bacteria	9375	Open in IMG/M
3300010401\|Ga0134121_12582724	All Organisms → cellular organisms → Bacteria	551	Open in IMG/M
3300010880\|Ga0126350_11416012	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	759	Open in IMG/M
3300010880\|Ga0126350_12022807	Not Available	1296	Open in IMG/M
3300010937\|Ga0137776_1222184	Not Available	727	Open in IMG/M
3300011270\|Ga0137391_10001723	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	16087	Open in IMG/M
3300012350\|Ga0137372_10496412	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	909	Open in IMG/M
3300012354\|Ga0137366_11015764	Not Available	576	Open in IMG/M
3300012354\|Ga0137366_11138099	Not Available	535	Open in IMG/M
3300013104\|Ga0157370_12056468	All Organisms → cellular organisms → Bacteria	512	Open in IMG/M
3300014157\|Ga0134078_10252757	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	740	Open in IMG/M
3300014325\|Ga0163163_13342263	Not Available	500	Open in IMG/M
3300014326\|Ga0157380_12056363	Not Available	634	Open in IMG/M
3300014501\|Ga0182024_11440199	Not Available	790	Open in IMG/M
3300016294\|Ga0182041_10428881	Not Available	1132	Open in IMG/M
3300016387\|Ga0182040_10080367	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2146	Open in IMG/M
3300016404\|Ga0182037_11475671	Not Available	603	Open in IMG/M
3300017999\|Ga0187767_10247461	Not Available	585	Open in IMG/M
3300018047\|Ga0187859_10068632	All Organisms → cellular organisms → Bacteria	1867	Open in IMG/M
3300018060\|Ga0187765_10049405	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2160	Open in IMG/M
3300021559\|Ga0210409_10484419	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1100	Open in IMG/M
3300021560\|Ga0126371_10841318	Not Available	1063	Open in IMG/M
3300025906\|Ga0207699_10187692	All Organisms → cellular organisms → Bacteria	1393	Open in IMG/M
3300025911\|Ga0207654_11084729	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Sanguibacteraceae → Sanguibacter → Sanguibacter antarcticus	583	Open in IMG/M
3300025917\|Ga0207660_11002895	Not Available	681	Open in IMG/M
3300025921\|Ga0207652_11315312	All Organisms → cellular organisms → Bacteria	625	Open in IMG/M
3300025928\|Ga0207700_10159343	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Ktedonobacteria → Ktedonobacterales → Ktedonobacteraceae → Ktedonobacter	1873	Open in IMG/M
3300025939\|Ga0207665_10004105	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	9709	Open in IMG/M
3300028782\|Ga0307306_10134893	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	678	Open in IMG/M
3300031170\|Ga0307498_10260392	Not Available	633	Open in IMG/M
3300031546\|Ga0318538_10222010	Not Available	1012	Open in IMG/M
3300031564\|Ga0318573_10228509	Not Available	990	Open in IMG/M
3300031572\|Ga0318515_10243474	Not Available	964	Open in IMG/M
3300031572\|Ga0318515_10419736	Not Available	716	Open in IMG/M
3300031573\|Ga0310915_10394273	Not Available	983	Open in IMG/M
3300031573\|Ga0310915_10544721	Not Available	824	Open in IMG/M
3300031573\|Ga0310915_11217556	Not Available	520	Open in IMG/M
3300031640\|Ga0318555_10566997	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	615	Open in IMG/M
3300031640\|Ga0318555_10817234	Not Available	503	Open in IMG/M
3300031668\|Ga0318542_10381973	Not Available	726	Open in IMG/M
3300031680\|Ga0318574_10113810	Not Available	1512	Open in IMG/M
3300031680\|Ga0318574_10600203	Not Available	645	Open in IMG/M
3300031681\|Ga0318572_10150407	Not Available	1344	Open in IMG/M
3300031681\|Ga0318572_10204873	Not Available	1153	Open in IMG/M
3300031681\|Ga0318572_10654880	Not Available	625	Open in IMG/M
3300031713\|Ga0318496_10233973	Not Available	1012	Open in IMG/M
3300031713\|Ga0318496_10674827	Not Available	570	Open in IMG/M
3300031719\|Ga0306917_10944333	Not Available	674	Open in IMG/M
3300031723\|Ga0318493_10351578	Not Available	801	Open in IMG/M
3300031736\|Ga0318501_10616201	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	596	Open in IMG/M
3300031740\|Ga0307468_100543904	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	933	Open in IMG/M
3300031747\|Ga0318502_10830574	Not Available	561	Open in IMG/M
3300031748\|Ga0318492_10384487	Not Available	737	Open in IMG/M
3300031751\|Ga0318494_10569897	Not Available	661	Open in IMG/M
3300031764\|Ga0318535_10121968	Not Available	1152	Open in IMG/M
3300031764\|Ga0318535_10496652	Not Available	542	Open in IMG/M
3300031765\|Ga0318554_10142191	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1360	Open in IMG/M
3300031765\|Ga0318554_10277482	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	954	Open in IMG/M
3300031770\|Ga0318521_10401509	Not Available	817	Open in IMG/M
3300031778\|Ga0318498_10542686	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	510	Open in IMG/M
3300031793\|Ga0318548_10130171	Not Available	1220	Open in IMG/M
3300031793\|Ga0318548_10151881	Not Available	1129	Open in IMG/M
3300031794\|Ga0318503_10259564	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	564	Open in IMG/M
3300031798\|Ga0318523_10054996	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1880	Open in IMG/M
3300031798\|Ga0318523_10493723	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	606	Open in IMG/M
3300031799\|Ga0318565_10660512	Not Available	501	Open in IMG/M
3300031805\|Ga0318497_10543885	Not Available	651	Open in IMG/M
3300031831\|Ga0318564_10256676	Not Available	775	Open in IMG/M
3300031832\|Ga0318499_10229800	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	722	Open in IMG/M
3300031845\|Ga0318511_10288064	Not Available	741	Open in IMG/M
3300031846\|Ga0318512_10640989	Not Available	543	Open in IMG/M
3300031860\|Ga0318495_10084188	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1424	Open in IMG/M
3300031896\|Ga0318551_10750391	Not Available	566	Open in IMG/M
3300032009\|Ga0318563_10211704	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1046	Open in IMG/M
3300032009\|Ga0318563_10324359	Not Available	833	Open in IMG/M
3300032060\|Ga0318505_10209167	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	914	Open in IMG/M
3300032064\|Ga0318510_10050764	Not Available	1467	Open in IMG/M
3300032067\|Ga0318524_10624429	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	568	Open in IMG/M
3300032068\|Ga0318553_10104654	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1445	Open in IMG/M
3300032068\|Ga0318553_10583108	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	586	Open in IMG/M
3300032076\|Ga0306924_10506807	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1374	Open in IMG/M
3300032090\|Ga0318518_10073327	Not Available	1671	Open in IMG/M
3300032770\|Ga0335085_10237469	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2201	Open in IMG/M
3300032892\|Ga0335081_12110698	Not Available	597	Open in IMG/M
3300033134\|Ga0335073_11142985	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycolicibacterium	788	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	95.16%
Host-Associated	Host-Associated	4.84%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	91.94%
Plants	Host-Associated → Plants	4.84%
Aquatic	Environmental → Aquatic	3.23%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	91.94%
Rhizosphere	Host-Associated → Plants → Rhizosphere	4.03%
Freshwater	Environmental → Aquatic → Freshwater	1.61%
Thermal Springs	Environmental → Aquatic → Thermal Springs	0.81%
Sediment	Environmental → Aquatic → Sediment	0.81%
Roots	Host-Associated → Plants → Roots	0.81%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	75.81%
Loam	Environmental → Terrestrial → Soil → Loam	11.29%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	4.84%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	4.03%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	0.81%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	0.81%
Hot (42-90C)	Environmental → Aquatic → Thermal Springs → Hot (42-90C)	0.81%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.81%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.81%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	46.77%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	20.97%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	8.87%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	7.26%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	4.03%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	4.03%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	2.42%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	0.81%
Unclassified	Environmental → Aquatic → Freshwater → Groundwater → Unclassified	0.81%
Sediment	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Sediment	0.81%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.81%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.81%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	0.81%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	0.81%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	41.13%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	8.87%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	5.65%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	5.65%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	4.84%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	4.03%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	2.42%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	2.42%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	2.42%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	2.42%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.61%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	1.61%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	1.61%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	1.61%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	1.61%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	1.61%
Boreal Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Boreal Forest Soil	1.61%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	0.81%
Soil	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil	0.81%
Sediment	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Sediment → Sediment	0.81%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	0.81%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	0.81%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.81%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost	0.81%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	0.81%
Switchgrass Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Switchgrass Rhizosphere	0.81%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.81%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.81%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300005181	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_127	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005336	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG	Environmental	Open in IMG/M
3300005435	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG	Environmental	Open in IMG/M
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental	Open in IMG/M
3300005445	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG	Environmental	Open in IMG/M
3300005446	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_135	Environmental	Open in IMG/M
3300005537	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen01_05102014_R1	Environmental	Open in IMG/M
3300005587	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_103	Environmental	Open in IMG/M
3300005598	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_155	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006028	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG	Environmental	Open in IMG/M
3300006046	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_101	Environmental	Open in IMG/M
3300006059	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2012	Environmental	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300006804	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS200	Environmental	Open in IMG/M
3300009093	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG	Host-Associated	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300009174	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG	Host-Associated	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010154	Soil microbial communities from Willow Creek, Wisconsin, USA - WC-WI-TBF metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010335	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_09082015	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010396	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-2	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300010401	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-1	Environmental	Open in IMG/M
3300010880	Boreal forest soil eukaryotic communities from Alaska, USA - C5-1 Metatranscriptome (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300010937	Fumarole sediment microbial communities, Furnas, Sao Miguel, Azores. Combined Assembly of Gp0156138, Gp0156139	Environmental	Open in IMG/M
3300011270	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4B metaG	Environmental	Open in IMG/M
3300012350	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_60_16 metaG	Environmental	Open in IMG/M
3300012354	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_60_16 metaG	Environmental	Open in IMG/M
3300013104	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG	Host-Associated	Open in IMG/M
3300014157	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_20cm_2_24_1 metaG	Environmental	Open in IMG/M
3300014325	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG	Host-Associated	Open in IMG/M
3300014326	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG	Host-Associated	Open in IMG/M
3300014501	Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300015242	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300016387	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176	Environmental	Open in IMG/M
3300016404	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082	Environmental	Open in IMG/M
3300017999	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP10_10_MG	Environmental	Open in IMG/M
3300018047	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_10_10	Environmental	Open in IMG/M
3300018060	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP05_10_MG	Environmental	Open in IMG/M
3300021559	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-M	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300025906	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025911	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025917	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025921	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025928	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025939	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300028782	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_193	Environmental	Open in IMG/M
3300031170	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 12_S	Environmental	Open in IMG/M
3300031546	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f23	Environmental	Open in IMG/M
3300031564	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f21	Environmental	Open in IMG/M
3300031572	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f19	Environmental	Open in IMG/M
3300031573	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111	Environmental	Open in IMG/M
3300031640	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f23	Environmental	Open in IMG/M
3300031668	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f23	Environmental	Open in IMG/M
3300031680	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f22	Environmental	Open in IMG/M
3300031681	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f20	Environmental	Open in IMG/M
3300031713	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f22	Environmental	Open in IMG/M
3300031719	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2)	Environmental	Open in IMG/M
3300031723	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f23	Environmental	Open in IMG/M
3300031736	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f21	Environmental	Open in IMG/M
3300031740	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05	Environmental	Open in IMG/M
3300031747	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f22	Environmental	Open in IMG/M
3300031748	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f22	Environmental	Open in IMG/M
3300031751	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f24	Environmental	Open in IMG/M
3300031764	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f27	Environmental	Open in IMG/M
3300031765	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f22	Environmental	Open in IMG/M
3300031770	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f17	Environmental	Open in IMG/M
3300031778	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f24	Environmental	Open in IMG/M
3300031793	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f21	Environmental	Open in IMG/M
3300031794	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f23	Environmental	Open in IMG/M
3300031798	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f19	Environmental	Open in IMG/M
3300031799	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f21	Environmental	Open in IMG/M
3300031805	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f23	Environmental	Open in IMG/M
3300031831	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f20	Environmental	Open in IMG/M
3300031832	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f25	Environmental	Open in IMG/M
3300031845	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f18	Environmental	Open in IMG/M
3300031846	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f19	Environmental	Open in IMG/M
3300031860	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f25	Environmental	Open in IMG/M
3300031896	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f19	Environmental	Open in IMG/M
3300032009	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f19	Environmental	Open in IMG/M
3300032060	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f18	Environmental	Open in IMG/M
3300032064	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f17	Environmental	Open in IMG/M
3300032067	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f22	Environmental	Open in IMG/M
3300032068	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f21	Environmental	Open in IMG/M
3300032076	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)	Environmental	Open in IMG/M
3300032090	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f22	Environmental	Open in IMG/M
3300032770	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.5	Environmental	Open in IMG/M
3300032892	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.5	Environmental	Open in IMG/M
3300033134	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.2	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI10216J12902_1009210301	3300000956	Soil	AGPARLLARVRRGRPALLALRLTVVAAVSVTAVAVAGRAPATPALIVGAVTWLMLTARHDLAPPR*
JGI10216J12902_1062877041	3300000956	Soil	ARLALRIAAAAAMSIGVALIAGARPATPALITGVLTWLALTARHDLAPPG*
Ga0066678_110798192	3300005181	Soil	ARATRRETAGPGPRRWRPAADGERRRRRPAAGLVAGRWWSRVRRGRPARLALRIAAAAVVSIAVALVAGPRPATPALITGALTWLALTARHDLAPPG*
Ga0066388_1031681742	3300005332	Tropical Forest Soil	VRRGRPARLVLRIAAVAAVSIAVALVAGPRPATPALITGALTWLAVTARHDLAPPG*
Ga0066388_1078931701	3300005332	Tropical Forest Soil	GLLAGRWWARVRRGRPARLALRIAAAAAVSIGVALIAGARPATPALITGVLTWLALTARHDLAPPG*
Ga0070680_1012847222	3300005336	Corn Rhizosphere	PARIRHGRPARLALRLAVVAAASVAAVVVVGWTPASAAVITGVLTWLLLTARHDLAPPP*
Ga0070714_1011888012	3300005435	Agricultural Soil	RLALRVLIAAALSAVAVAVTGSQPATPALITGALTWLLLTARHDLAPPA*
Ga0070713_1005602072	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	AADGERRRWRPAAGLLASRCWSRVRRGRPARLALRITVAGAVSLGVALIAGARPATPGLITGVLTWLALTARHDLAPPG*
Ga0070708_1014411891	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	PAAGLLASRCWSRVRRGRPARLALRITVAGAMSLGVALIAGARPATPALITGVLTWLALTARHDLAPPG*
Ga0066686_109371731	3300005446	Soil	RGRPARLALRIAAAAVVSIAVALVAGPRPATPALITGALTWLALTARHDLAPPG*
Ga0070730_103221141	3300005537	Surface Soil	AGLGRFAGLGRFAGLGRERPAAGGEKRRRRPAARLTARGWWSRVRRGRPARLALRVAAVAAVSATVALVAGTRPATPALITGAVTWLALTVRHDLAPPG*
Ga0066654_107443072	3300005587	Soil	RPARLALRLAVVAAAIAAAVVVDGWAPATPALITGFLTWLLLTARHDLAPPP*
Ga0066706_109721862	3300005598	Soil	VRRGRPARLALRIAAAAVVSIAVALVAGLRPATPALITGALTWLALTARHDPAPPG*
Ga0066903_1021913022	3300005764	Tropical Forest Soil	VRRGRPAGLALRIAVAAAMGTGVALVAGARPATPDLITGVLTWRAPTARRDLAPPG*
Ga0070717_119298791	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	VRRGRPARLVLRIAAVVAVSTAVALVAGPRPATPALITGALTWLAVTARHDLAPPG*
Ga0066652_1001519211	3300006046	Soil	VRRGRPARLALRIAAAAVVSIAVALVAGPRPATPALITGALTWLALTARHDLAPPG*
Ga0075017_1007755331	3300006059	Watersheds	RRGRPARLALRIAATAAASIAVTLVAGPRPATPALIIGALTWLALTARHDLAPPG*
Ga0070712_1002615613	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	VRRGRPARLALRITVAGAMSLGVALIAGARPATPALITGVLTWLALTARHDLAPPG*
Ga0079221_101940151	3300006804	Agricultural Soil	RRRRRPAAGLVAGRWWSRVRRGRPARLALRVAATAAVSIAVTLVAGPRPATPALITGALTWLALTARHDLAPPQ*
Ga0105240_104685423	3300009093	Corn Rhizosphere	ALLALRLTVVAAVSVTAVAVAGRTPATPALIVGAVTWLMLTARHDLAPPR*
Ga0066709_1008248872	3300009137	Grasslands Soil	VRRGRPARLALRIAAAAVVSIAVALVAGLRPATPALITGALTWLALTARHDLAPPG*
Ga0066709_1037108731	3300009137	Grasslands Soil	MTALTVRRLASRVRRGRPVRLALRVAAAGAITVAAVLIAGTRPATPGLITGAVTWLALTARCDLAPPP*
Ga0105241_119052841	3300009174	Corn Rhizosphere	RPARLALRVLLAVAIGIGVAAVAGLQPATPALWTGILTWLLITARHDLAPPT*
Ga0126382_117046321	3300010047	Tropical Forest Soil	VLRIAAAGAASIGVALVAGARPATPALITGILTWLALTARHDLAPPG*
Ga0126373_133012101	3300010048	Tropical Forest Soil	MLTLRIAAAAAVSIGVALIAGARPATPALITGVLTWLALTARHDLAPPG*
Ga0127503_103832811	3300010154	Soil	RWRPAADGERRRWRPAAGLLASRCWSRVRRGRPGRLALRITVAGAVSLGVALIAGARPATPALITGVLTWLALTARHDLAPPG*
Ga0134063_100722621	3300010335	Grasslands Soil	VRRGRPARLALRIAAAAVVSIAVALVAGPRPATPALITGALTWLALTA
Ga0126370_122516452	3300010358	Tropical Forest Soil	VRRGRPARLALRIAAAAAVSIGVALVAGARPATPALITGVLTWLALTARHDLAPPG*
Ga0126372_105917541	3300010360	Tropical Forest Soil	RRPAAGLVAGRWWSRVRRGRPARLVLRIAAVAAVSIAVALVAGPRPATPALITGALTWLAVTARHDLAPPG*
Ga0126378_101167954	3300010361	Tropical Forest Soil	AGLVASRWWSRVRRGRPGRLALRIAAAGAVSLGVALVAGARPATPALITGALTWLALTARHDLAPPR*
Ga0126378_127573701	3300010361	Tropical Forest Soil	VRRGRPARLALRIAAAGAGCLGVGLIAGARPATPALITGILTWLALTARHDLAPPG*
Ga0126377_126859812	3300010362	Tropical Forest Soil	GRPARLALRIAAAAAVSTGVALIAGARPATPALITGVLTWLALTARHDLAPPG*
Ga0126381_1006865651	3300010376	Tropical Forest Soil	PARLALRLALVAAVTAAAIIVDGWMPATPALITGVLTWLLLTARHDLAPPP*
Ga0126381_1025207371	3300010376	Tropical Forest Soil	VRRGRPARLVLRIAAAAAVSIGVVLIAGARPATPALITGVLTWLALTARHDLAPPG*
Ga0134126_129950012	3300010396	Terrestrial Soil	RGRPARLALRVLLAVAIGIGVAAVAGLQPATPALWTGLATWLLLTARHDLAPPT*
Ga0126383_100045891	3300010398	Tropical Forest Soil	VRRGRPGRLALRIAAAGAVSLGVALTAGARPATPALITGALTWLALTARHDLAPPR*
Ga0134121_125827242	3300010401	Terrestrial Soil	LMAARLVQRVRRGRPARLALRVLLAVAIGIGVAAVAGLQPATPALWTELATWLLLTARHDLAPPT*
Ga0126350_114160121	3300010880	Boreal Forest Soil	LALRVLIAVALSAVAVAVTGSQSATPALITGALTWLLLTARHDQAPPL*
Ga0126350_120228071	3300010880	Boreal Forest Soil	VRRGRPVRLVLRLAIAAAVIVGVVLVAGTRPATSALITGALTWLALTARHDVARRDPPRQDPVHPDPGH*
Ga0137776_12221842	3300010937	Sediment	MMPAWWWSRVRRGRPVRLAARIGVAVAACLGATLAAGPGPATPALITGVLTWLALTARRDLAPPG*
Ga0137391_100017234	3300011270	Vadose Zone Soil	VLALRVAVASGVSAGAVTAVGWQPAAPALITGALTWLTLTARHDLAPPEQ*
Ga0137391_103618513	3300011270	Vadose Zone Soil	DLASPLAAWRVPPGGARLLSRIRRGRPARLALRVLIAAAVGAVAVAVDGSQPATPALITGALTWLLLTARHDLAPDP*
Ga0137372_104964122	3300012350	Vadose Zone Soil	VSRIRRGRPARLALRVLIAVAVGVIAVVAAGSQPATPALITGALTWLLLTARHDLAPPP*
Ga0137366_110157641	3300012354	Vadose Zone Soil	MRGSRLVSRIRRGRPARLALRVLIAVAVGAIAVVAAGSQPATPALITGALTWLLLTARHDLAPPP*
Ga0137366_111380991	3300012354	Vadose Zone Soil	LALRAAAVAAVSTGVVLVAGSGPATPALITGALTWLALTARHDLAPPR*
Ga0157370_120564682	3300013104	Corn Rhizosphere	PARLALRVLLAVAIGIGVAAVAGLQPATPALWTGLATWLLLTARHDLAPPT*
Ga0134078_102527571	3300014157	Grasslands Soil	RATRRETAGPGPRRWRPAADGERRRRRPAAGLVAGRWWSRVRRGRPARLALRIAAAAVVSIAVALVAGPRPATPALITGALTWLALTARHDLAPPG*
Ga0163163_133422631	3300014325	Switchgrass Rhizosphere	MAARLVQRVRRGRPARLALRVLLAGAIGIGGAAVAGLQPATPALWTELATWLLLTARHDLAPPT*
Ga0157380_120563631	3300014326	Switchgrass Rhizosphere	ARIRHGRPARLALRLAVVAASSVAAVVVVGWTPASAAVITGVLTWLLLTARHDLAPPP*
Ga0182024_114401991	3300014501	Permafrost	VRWLSRVRLLSRIRRGRPARLALRILIAAAVGAVAVVVDGLQPATPALITGALTWLLLTARHDLAP*
Ga0137412_107824761	3300015242	Vadose Zone Soil	ATWRVPPGVARLLARIRRGRPARLALRVLIAAAVGAVAVAVDGFRPATPALITGALTWLLLTAPRDLAP*
Ga0182041_104288811	3300016294	Soil	PAAGLVAGRWWSRVRRGRPARLALRIAGVIAVSIAVALVAGPRPATPALITGALTWLAVTARHDLAPPG
Ga0182040_100803673	3300016387	Soil	ARVRRGRPTRLALRIAAAAAVSIGVALVAGARPATPALITGVLTWLALTARHDLAPPG
Ga0182037_114756711	3300016404	Soil	AADGERRRWRPAAGLPASRWWSRVRRGRPARLALRIAGAGALSLAVALIAGARPATPALITGILTWLALTARHDLAPPR
Ga0187767_102474611	3300017999	Tropical Peatland	GRPARLALRLAVVAAATSAAVVVDGWAPATPALIAGFLTWLLLTARHDLAPPP
Ga0187859_100686323	3300018047	Peatland	RLLSRIRCGRPARLALRVLIATAVGTVAAAVAGFQPATPALITGAVTWLLLTARHDLAPP
Ga0187765_100494053	3300018060	Tropical Peatland	LARLPARIRHGRPARLALRMAVVAAATVAAVVVDGWMPATPALITGFLTWLLLTARHDLAPPP
Ga0210409_104844192	3300021559	Soil	RPAAGLVARRWWSRVRRGRPARLVLRIAAVAAVSAGVALVAGSRPATPALITGALTWLALTARHDLAPPG
Ga0126371_108413182	3300021560	Tropical Forest Soil	RTGPGGAVAGRWWSRARRGRPVRLALRAAAAAASLGCVLVAGARPATPALITGVLTLFVLTARHDLAPPG
Ga0207699_101876924	3300025906	Corn, Switchgrass And Miscanthus Rhizosphere	VQRVRRGRPARLALRVLLAVAIGIGVAAVAGLQPATPALWTGILTWLLLTARHDLAPPT
Ga0207654_110847291	3300025911	Corn Rhizosphere	RPARLALRVLLAVAIGIGVAAVAGLQPATPALWTGILTWLLITARHDLAPPT
Ga0207660_110028951	3300025917	Corn Rhizosphere	PARIRHGRPARLALRLAVVAAASVAAVVVVGWTPASAAVITGVLTWLLLTARHDLAPPP
Ga0207652_113153122	3300025921	Corn Rhizosphere	VQRVRRGRPARLALRVLLAVAIGIGVAAVAGLQPATPALWTGILTWLLITARHDLAPPT
Ga0207700_101593431	3300025928	Corn, Switchgrass And Miscanthus Rhizosphere	GRPVRLALRVAAAATASLGCVLAAGAQPATPALITGVLTWFVLTARHDLAPPG
Ga0207665_1000410514	3300025939	Corn, Switchgrass And Miscanthus Rhizosphere	VRRGRPARLALRVLLAVAIGIGVAAVAGLQPATPALWTGILTWLLITARHDLAPPT
Ga0307306_101348931	3300028782	Soil	PALLALRLAVVAAVSVTVVAVAGRAPATPALIVGAVTWLMLTARHDLAPPR
Ga0307498_102603922	3300031170	Soil	PGRLALRLAVVAAVTAAAVAVDGWMPATPTLITGVLTWLLLTARHDLAPPP
Ga0318538_102220102	3300031546	Soil	NGERRRGRPAAGLLAGRWWARVRRGRPARLALRIATAAAVSIGVALVAGARPATPALITGVLTWLALTARHDLAPPG
Ga0318573_102285091	3300031564	Soil	AADGERGRWRPAAGLLARRWWSRVRRGRPARLSLRIAVAAAVYIGPALIAGARPATPDLITGVPTARALTARRDLALPG
Ga0318515_102434742	3300031572	Soil	LAGRWWARVRRGRPARLALRIAAAAAVSIGVALVAGARPATPALITGVLTWLALTARRDLPPPG
Ga0318515_104197362	3300031572	Soil	ALSRARRRDRPTANGERRRGRPAAGLLAGRWWARVRRGRPARLALRIATAAAVSIGVALVAGARPATPALITGVLTWLALTARHDLAPPG
Ga0310915_103942731	3300031573	Soil	LLAGRWWARVRRGRPARLALRIAAAAAVSIGVALVAGARPATPALITGVLTWLALTARRDLAPPG
Ga0310915_105447211	3300031573	Soil	RGRPARLALRIAAAAAVSTGVALIAGARPATPALITGVLTWLALTARHDLAPPTWLRPDDRTVRPQ
Ga0310915_112175561	3300031573	Soil	RPTRLALRIAAAAAVSIGVALVAGARPATPALITGVLTWLALTARHDLAPPG
Ga0318555_105669971	3300031640	Soil	WWSRVRRGRPARLALRIAAVAAVSITVALVAGPRPATPALITGALTWLAVTARHDLAPPG
Ga0318555_108172341	3300031640	Soil	GPPPAAGLLAGRWWARVRRGRPARLALRIATAAAVSIGVALVAGARPATPALITGVLTWLALTARHDLAPPG
Ga0318542_103819732	3300031668	Soil	PLLLALRLAAVAVLSATVVAVAGSAPATPALITGALTWLLLTARHDLAPPR
Ga0318574_101138103	3300031680	Soil	AWPAAGLVAGRWWSRVRRGRPARLALRIAGVIAVSIAVALVAGPRPATPALITGALTWLAVTARHDLAPPG
Ga0318574_106002032	3300031680	Soil	HRPGAGLLAGRWWARVRRGRPARLALRIAAAAAVSTGVALIAGARPATPALITGVLTWLALTARHDLAPPTWLRPDDRTVRPQ
Ga0318572_101504071	3300031681	Soil	PWAGLVAGRWWSRVRRGRPARLALRIAGVIAVSIAVALVAGPRPATPALITGALTWLAVTARHDLAPPG
Ga0318572_102048731	3300031681	Soil	RPAAGLLARRWWSRVRRGRPARLSLRIAVAAAVYIGPALIAGARPATPDLITGVPTARALTARRDLALPG
Ga0318572_106548802	3300031681	Soil	LLASRWWSRVRRGRPARLALRIAVAGALSLTVALIAGARPATPALITGILTWLALTARHDLAPPR
Ga0318496_102339731	3300031713	Soil	SRWWSRVRRGRPARLALRIAVAGALSLTVALIAGARPATPALITGILTWLALTARHDLAPPR
Ga0318496_106748271	3300031713	Soil	LWASRWWSRVRRGRPAKLALRIAVAGAVSIGVALVAGARPATPALITGVLTWLALTARHDLAPPG
Ga0306917_109443331	3300031719	Soil	VRRGRPARLSLRIAVAAAVYIGPALIAGARPATPDLITGVPTARALTARRDLAL
Ga0318493_103515782	3300031723	Soil	LRIAVAGAVSIGVALVAGARPATPALITGVLTWLALTARHDLAPPG
Ga0318501_106162011	3300031736	Soil	LGAGRWWSRVRRGRPARLALRIAAVAAVSITVALVAGPRPATPALITGALTWLAVTARHDLAPPG
Ga0307468_1005439041	3300031740	Hardwood Forest Soil	RGRPALLALRLTVVAAVSVTAVAVAGRAPATPALIVGAVTWLMLTARHDLAPPR
Ga0307468_1012072751	3300031740	Hardwood Forest Soil	RVLLAVAIGIGVAAVAGLQPATPALWTGILTWLLLTARHDLAPPT
Ga0318502_108305741	3300031747	Soil	VGLLASRWWSRVRRGRPARLALRIAVAGALSLTVALIAGARPATPALITGILTWLALTARHDLAPPR
Ga0318492_103844871	3300031748	Soil	LALRIAVAGALSLTVALIAGARPATPALITGILTWLALTARHDLAPPR
Ga0318494_105698972	3300031751	Soil	LARLPARVRHGRPVRLALRLVVVAAVTAAAVVVDGGMPATPALITGVLTWLLLTARHDLAPPP
Ga0318535_101219681	3300031764	Soil	RWWSRVRRGRPARLALRIAGVIAVSIAVAMVAGPRPATPALITGALTWLAVTARHDLAPP
Ga0318535_104966521	3300031764	Soil	ARSALSWARRRDRPTADGERRGRPAAGLLAGRWWARVRRGRPARLTLRIAAAAALSIGVALVAGARPATPALITGVLTWLALTARHDLAPPG
Ga0318554_101421913	3300031765	Soil	LLAGRWWARVRRGRPARLALRIAAAAAVSTGVALIAGARPATPALITGVLTWLALTARHDLAPPTWLRPDDRTVRPQ
Ga0318554_102774822	3300031765	Soil	AAGLGAGRWWSRVRRGRPARLALRIAAVAAVSIAVALVAGPRPATPALITGALTWLAVTARHDLAPPG
Ga0318521_104015091	3300031770	Soil	SRVRRGRPARLALRIAVAGALSIGVALVAGARPATPALITGVLTWLALTARHDLAPPG
Ga0318498_105426862	3300031778	Soil	RRRRRPAAGLGAGRWWSRVRRGRPARLALRIAAVAAVSITVALVAGPRPATPALITGALTWLAVTARHDLAPPG
Ga0318548_101301713	3300031793	Soil	DGERRRGRPGAGLLAGRWWARVRRGRPARLALRIAAAAAVSIGVALVAGARPATPALITGVLTWLALTARHDLAPPG
Ga0318548_101518812	3300031793	Soil	LRIAAAAAVSIGVALVAGARPATPALITGVLTWLALTARRDLPPPG
Ga0318503_102595642	3300031794	Soil	LALRIAAVAAVSITVALVAGPRPATPALITGALTWLAVTARHDLAPPG
Ga0318523_100549961	3300031798	Soil	VRRGRPARLALRIAAAAAVSIGVALVAGARPATPALITGVLTWLALTARHDLAPPG
Ga0318523_104937231	3300031798	Soil	LALRIAAVAALSIAVALVAGPRPATPALITGALTWLAVTARHDLAPPG
Ga0318565_106605122	3300031799	Soil	ADGERRRRRPAAGLVAGRWWSRVRRGRPARLALRIAGVIAVSIAVALVAGPRPATPALITGALTWLAVTARHDLAPPG
Ga0318497_102896061	3300031805	Soil	RPARLALRIAAAAAVSTGVALIAGARPATPALITGVLTWLALTARHDLAPPTWLRPDDRTVRPQ
Ga0318497_105438852	3300031805	Soil	AAGLPASRWWSRVRRGRPARLALRIAVAGAVSIGVALVAGARPATPALITGVLTWLALTARHDLAPPG
Ga0318564_102566761	3300031831	Soil	PAADGERRRWRPAAGLPASRWWSRVRRGRPARLALRIAVAGALSIGVALVAGARPATPALITGVLTWLALTARHDLAPPG
Ga0318499_102298002	3300031832	Soil	RRRPAADGERRRWRPAVGLLASRWWSRVRRGRPARLALRIAAVAAVSITVALVAGPRPATPALITGALTWLAVTARHDLAPPG
Ga0318511_102880642	3300031845	Soil	AAGLLAGRWWARVRRGRPARLALRIATAAAVSIGVALVAGARPATPALITGVLTWLALTARHDLAPPG
Ga0318512_106409891	3300031846	Soil	RGRPARLALRIATAAAVSIGVALVAGARPATPALITGVLTWLALTARHDLAPPG
Ga0318495_100841881	3300031860	Soil	HGPARLALRIAAAAAVSIGVALVAGARPATPALITGVLTWLALTARHDLAPPG
Ga0318551_107503912	3300031896	Soil	RARRRDRPTASGERQRGRPAAGLLAGRWWARVRRGRPARLALRIATAAAVSIGVALVAGARPATPALITGVLTWLALTARHDLAPPG
Ga0318563_102117041	3300032009	Soil	PGPRRWRPAADGERRRRRPAAGLGAGRWWSRVRRGRPARLALRIAAVAAVSITVALVAGPRPATPALITGALTWLAVTARHDLAPPG
Ga0318563_103243592	3300032009	Soil	WWSRVRRGRPARLALRIAVAGALSLTVALIAGARPATPALITGILTWLALTARHDLAPPR
Ga0318505_102091671	3300032060	Soil	VRRGRPARLALRIAAAAAVSIGVALVAGARPATPALITGVLTWLALTARRDLAPPG
Ga0318510_100507643	3300032064	Soil	WPAAGLVAGRWWSRVRRGRPARLALRIAGVIAVSIAVALVAGPRPATPALITGALTWLAVTARHDLAPPG
Ga0318524_106244292	3300032067	Soil	PAADGERRRRRPAAGLGAGRWWSRVRRGRPARLALRIAAVAALSIAVALVAGPRPATPALITGALTWLAVTARHDLAPPG
Ga0318553_101046543	3300032068	Soil	TASGERRRGRPAAGLLAGRWWARVRRGRPARLALRIATAAAVSIGVALVAGARPATPALITGVLTWLALTARHDLAPPG
Ga0318553_105831082	3300032068	Soil	SRVRRGRPARLALRIAAVAAVSIAVALVAGPRPATPALITGALTWLAVTARHDLAPPG
Ga0306924_105068073	3300032076	Soil	SRWWSRVRRGRPARLALRIAVAGAVSIGVALVAGARPATPALITGVLTWLALTARHDLAPPG
Ga0318518_100733273	3300032090	Soil	HQDRAARREAAGPGPRRWRPTADGERRRRRPAAGLVAGRWWSRVRRGRPARLALRIAGVIAVSIAVALVAGPRPATPALITGALTWLAVTARHDLAPPG
Ga0335085_102374691	3300032770	Soil	LLARVRRGRPGRLALRLAAAAAVIAAVVAVAGWTPATPALITGVLTWLLLTARHDLAPPD
Ga0335081_121106982	3300032892	Soil	RVRRGRPARLALRLAVVAAASVAAVAVDGWRPATPAVIAGVLTWLLLTARHDLAPPP
Ga0335073_111429852	3300033134	Soil	MPAPTLATRLRHGRPARLLLRVVIAVVVSAGVAAVAGSQPATPALIVGAATWLLLTARHDLAPPR

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F069164

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences