Metagenome / Metatranscriptome Family F068882

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

Select file to download:
Download

Overview

Basic Information
Family ID	F068882
Family Type	Metagenome / Metatranscriptome
Number of Sequences	124
Average Sequence Length	52 residues
Representative Sequence	HAYARAAFYAGLAAWAWGELAGGVNWVRRALGAAGLVYVVVKVGAALGA
Number of Associated Samples	105
Number of Associated Scaffolds	124

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	10.48 %
% of genes near scaffold ends (potentially truncated)	83.87 %
% of genes from short scaffolds (< 2000 bps)	95.16 %
Associated GOLD sequencing projects	94
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.71

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign

Most Common Taxonomy
Group	Bacteria (81.452 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (11.290 % of family members)
Environment Ontology (ENVO)	Unclassified (40.323 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (55.645 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Select alignment to view:

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 55.84% β-sheet: 0.00% Coil/Unstructured: 44.16%
Feature Viewer

Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.71
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.71
Powered by PDBe Molstar

SCOP family	SCOP domain	Representative PDB	TM-score
f.72.1.1: Double antiporter-like subunits from respiratory complex I	d3rkol_	3rko	0.80171
f.63.1.1: Claudin	d3jbre_	3jbr	0.79584
f.73.2.1: Respiratory complex I subunit NuoJ-like	d4he8j_	4he8	0.79524
f.13.1.0: automated matches	d5c1ma_	5c1m	0.78763
f.56.1.0: automated matches	d4al0a_	4al0	0.78647

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 124 Family Scaffolds
PF04248	NTP_transf_9	21.77
PF13561	adh_short_C2	2.42
PF00072	Response_reg	1.61
PF02826	2-Hacid_dh_C	1.61
PF07080	DUF1348	1.61
PF01872	RibD_C	1.61
PF14026	DUF4242	1.61
PF13191	AAA_16	0.81
PF02909	TetR_C_1	0.81
PF00583	Acetyltransf_1	0.81
PF05222	AlaDh_PNT_N	0.81
PF12680	SnoaL_2	0.81
PF10057	MpsC	0.81
PF02771	Acyl-CoA_dh_N	0.81
PF02607	B12-binding_2	0.81
PF00211	Guanylate_cyc	0.81
PF04389	Peptidase_M28	0.81
PF04072	LCM	0.81
PF06724	DUF1206	0.81
PF07110	EthD	0.81
PF06348	DUF1059	0.81
PF00313	CSD	0.81
PF00296	Bac_luciferase	0.81
PF07687	M20_dimer	0.81
PF12681	Glyoxalase_2	0.81
PF01553	Acyltransferase	0.81
PF10442	FIST_C	0.81
PF00857	Isochorismatase	0.81
PF01047	MarR	0.81
PF00112	Peptidase_C1	0.81
PF01542	HCV_core	0.81
PF00561	Abhydrolase_1	0.81

COG ID	Name	Functional Category	% Frequency in 124 Family Scaffolds
COG2343	Uncharacterized conserved protein, DUF427 family	Function unknown [S]	21.77
COG0262	Dihydrofolate reductase	Coenzyme transport and metabolism [H]	1.61
COG1985	Pyrimidine reductase, riboflavin biosynthesis	Coenzyme transport and metabolism [H]	1.61
COG3558	Uncharacterized conserved protein, nuclear transport factor 2 (NTF2) superfamily	Function unknown [S]	1.61
COG1309	DNA-binding protein, AcrR family, includes nucleoid occlusion protein SlmA	Transcription [K]	0.81
COG1335	Nicotinamidase-related amidase	Coenzyme transport and metabolism [H]	0.81
COG1535	Isochorismate hydrolase	Secondary metabolites biosynthesis, transport and catabolism [Q]	0.81
COG1960	Acyl-CoA dehydrogenase related to the alkylation response protein AidB	Lipid transport and metabolism [I]	0.81
COG2114	Adenylate cyclase, class 3	Signal transduction mechanisms [T]	0.81
COG2141	Flavin-dependent oxidoreductase, luciferase family (includes alkanesulfonate monooxygenase SsuD and methylene tetrahydromethanopterin reductase)	Coenzyme transport and metabolism [H]	0.81
COG3315	O-Methyltransferase involved in polyketide biosynthesis	Secondary metabolites biosynthesis, transport and catabolism [Q]	0.81

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	81.45 %
Unclassified	root	N/A	18.55 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	81.45 %
Unclassified	root	N/A	18.55 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	81.45 %
Unclassified	root	N/A	18.55 %

Name	Rank	Taxonomy	Distribution
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	57.26 %
Unclassified	root	N/A	18.55 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	2.42 %

Name	Rank	Taxonomy	Distribution
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	55.65 %
Unclassified	root	N/A	18.55 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1.61 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	18.55 %
Thermoleophilia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia	14.52 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	8.87 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	0.81 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.81 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	18.55 %
Solirubrobacterales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	12.10 %
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	3.23 %
Micromonosporales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales	2.42 %
Thermoleophilales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Thermoleophilales	1.61 %
unclassified Thermoleophilia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → unclassified Thermoleophilia	0.81 %
Geodermatophilales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales	0.81 %
Acetobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	0.81 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	0.81 %
Corynebacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales	0.81 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	18.55 %
unclassified Solirubrobacterales	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales	4.84 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	3.23 %
Micromonosporaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae	2.42 %
Solirubrobacteraceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae	1.61 %
Thermoleophilaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Thermoleophilales → Thermoleophilaceae	1.61 %
Thermoleophilia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → unclassified Thermoleophilia → Thermoleophilia bacterium	0.81 %
Capillimicrobiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Capillimicrobiaceae	0.81 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	0.81 %
Mycobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae	0.81 %
Geodermatophilaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae	0.81 %
Acetobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	0.81 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	18.55 %
Solirubrobacterales bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium	4.84 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	3.23 %
Actinoplanes	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Actinoplanes	2.42 %
unclassified Thermoleophilaceae	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Thermoleophilales → Thermoleophilaceae → unclassified Thermoleophilaceae	1.61 %
Capillimicrobium	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Capillimicrobiaceae → Capillimicrobium	0.81 %
Bradyrhizobium cosmicum	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium cosmicum	0.81 %
Solirubrobacter	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter	0.81 %
environmental samples	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → environmental samples	0.81 %
Thermoleophilia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → unclassified Thermoleophilia → Thermoleophilia bacterium	0.81 %
Mycobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae	0.81 %
Geodermatophilaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae	0.81 %
Acetobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	0.81 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	18.55 %
Solirubrobacterales bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium	4.84 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	3.23 %
Actinoplanes rishiriensis	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Actinoplanes → Actinoplanes rishiriensis	2.42 %
Thermoleophilaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Thermoleophilales → Thermoleophilaceae → unclassified Thermoleophilaceae → Thermoleophilaceae bacterium	1.61 %
Capillimicrobium parvum	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Capillimicrobiaceae → Capillimicrobium → Capillimicrobium parvum	0.81 %
uncultured Solirubrobacteraceae bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → environmental samples → uncultured Solirubrobacteraceae bacterium	0.81 %
Bradyrhizobium cosmicum	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium cosmicum	0.81 %
Solirubrobacter	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter	0.81 %
Thermoleophilia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → unclassified Thermoleophilia → Thermoleophilia bacterium	0.81 %
Mycobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae	0.81 %
Geodermatophilaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae	0.81 %
Acetobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	0.81 %

Visualization

Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2209111000\|2209921816	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium	508	Open in IMG/M
3300000955\|JGI1027J12803_106439161	Not Available	841	Open in IMG/M
3300000955\|JGI1027J12803_107846675	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1040	Open in IMG/M
3300000956\|JGI10216J12902_112970001	All Organisms → cellular organisms → Bacteria	675	Open in IMG/M
3300001305\|C688J14111_10304830	Not Available	505	Open in IMG/M
3300001686\|C688J18823_10822160	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	590	Open in IMG/M
3300002568\|C688J35102_117969500	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	519	Open in IMG/M
3300002568\|C688J35102_118316374	Not Available	548	Open in IMG/M
3300004081\|Ga0063454_100396296	Not Available	921	Open in IMG/M
3300004081\|Ga0063454_101871566	All Organisms → cellular organisms → Bacteria	527	Open in IMG/M
3300004153\|Ga0063455_101221406	All Organisms → cellular organisms → Bacteria	566	Open in IMG/M
3300004153\|Ga0063455_101624878	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium	510	Open in IMG/M
3300005327\|Ga0070658_11593568	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	566	Open in IMG/M
3300005344\|Ga0070661_101472605	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	574	Open in IMG/M
3300005347\|Ga0070668_102117866	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	519	Open in IMG/M
3300005367\|Ga0070667_100764708	All Organisms → cellular organisms → Bacteria	896	Open in IMG/M
3300005438\|Ga0070701_11169528	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium	544	Open in IMG/M
3300005441\|Ga0070700_101056340	Not Available	671	Open in IMG/M
3300005441\|Ga0070700_101586400	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium cosmicum	559	Open in IMG/M
3300005466\|Ga0070685_10275219	All Organisms → cellular organisms → Bacteria	1125	Open in IMG/M
3300005544\|Ga0070686_100387260	All Organisms → cellular organisms → Bacteria	1060	Open in IMG/M
3300005549\|Ga0070704_100159785	All Organisms → cellular organisms → Bacteria	1781	Open in IMG/M
3300005564\|Ga0070664_100993366	All Organisms → cellular organisms → Bacteria	789	Open in IMG/M
3300005578\|Ga0068854_102049601	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	528	Open in IMG/M
3300005587\|Ga0066654_10319334	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	838	Open in IMG/M
3300005615\|Ga0070702_101698296	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	525	Open in IMG/M
3300005719\|Ga0068861_100562385	All Organisms → cellular organisms → Bacteria	1041	Open in IMG/M
3300005719\|Ga0068861_102101208	All Organisms → cellular organisms → Bacteria	565	Open in IMG/M
3300005834\|Ga0068851_10801663	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium	585	Open in IMG/M
3300005840\|Ga0068870_11222311	All Organisms → cellular organisms → Bacteria	545	Open in IMG/M
3300006034\|Ga0066656_10449115	All Organisms → cellular organisms → Bacteria	839	Open in IMG/M
3300006058\|Ga0075432_10300106	All Organisms → cellular organisms → Bacteria	666	Open in IMG/M
3300006358\|Ga0068871_101683729	All Organisms → cellular organisms → Bacteria	601	Open in IMG/M
3300006797\|Ga0066659_11221906	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	627	Open in IMG/M
3300006852\|Ga0075433_10930596	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	758	Open in IMG/M
3300006954\|Ga0079219_10487435	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	857	Open in IMG/M
3300009094\|Ga0111539_10340406	All Organisms → cellular organisms → Bacteria	1746	Open in IMG/M
3300009094\|Ga0111539_11316733	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → unclassified Thermoleophilia → Thermoleophilia bacterium	838	Open in IMG/M
3300009098\|Ga0105245_13230067	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium	505	Open in IMG/M
3300009148\|Ga0105243_11239621	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	761	Open in IMG/M
3300009156\|Ga0111538_10404182	All Organisms → cellular organisms → Bacteria	1730	Open in IMG/M
3300009177\|Ga0105248_11547677	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	751	Open in IMG/M
3300009177\|Ga0105248_13038217	Not Available	534	Open in IMG/M
3300009789\|Ga0126307_10260947	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1393	Open in IMG/M
3300010037\|Ga0126304_10400278	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	917	Open in IMG/M
3300010042\|Ga0126314_11287808	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	548	Open in IMG/M
3300010147\|Ga0126319_1258596	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1544	Open in IMG/M
3300010301\|Ga0134070_10190234	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	749	Open in IMG/M
3300010304\|Ga0134088_10294714	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	783	Open in IMG/M
3300010371\|Ga0134125_11889144	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	649	Open in IMG/M
3300010375\|Ga0105239_12165553	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	646	Open in IMG/M
3300010375\|Ga0105239_13289364	All Organisms → cellular organisms → Bacteria	526	Open in IMG/M
3300010399\|Ga0134127_11384468	Not Available	774	Open in IMG/M
3300011119\|Ga0105246_12242407	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	532	Open in IMG/M
3300012045\|Ga0136623_10201362	All Organisms → cellular organisms → Bacteria	854	Open in IMG/M
3300012093\|Ga0136632_10253103	Not Available	797	Open in IMG/M
3300012186\|Ga0136620_10133878	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1126	Open in IMG/M
3300012187\|Ga0136622_10119498	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	1117	Open in IMG/M
3300012188\|Ga0136618_10126377	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium	1124	Open in IMG/M
3300012200\|Ga0137382_10167584	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1497	Open in IMG/M
3300012200\|Ga0137382_10744685	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	703	Open in IMG/M
3300012212\|Ga0150985_110933008	Not Available	587	Open in IMG/M
3300012212\|Ga0150985_120193328	Not Available	567	Open in IMG/M
3300012350\|Ga0137372_11059690	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	560	Open in IMG/M
3300012469\|Ga0150984_118051129	Not Available	1110	Open in IMG/M
3300012469\|Ga0150984_120156639	All Organisms → cellular organisms → Bacteria → Terrabacteria group	573	Open in IMG/M
3300012469\|Ga0150984_123536228	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	935	Open in IMG/M
3300012680\|Ga0136612_10000935	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	11814	Open in IMG/M
3300012683\|Ga0137398_11039839	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae	566	Open in IMG/M
3300012961\|Ga0164302_11625050	Not Available	538	Open in IMG/M
3300012977\|Ga0134087_10485365	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	619	Open in IMG/M
3300012987\|Ga0164307_10983518	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	685	Open in IMG/M
3300012988\|Ga0164306_10701317	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Capillimicrobiaceae → Capillimicrobium → Capillimicrobium parvum	804	Open in IMG/M
3300013306\|Ga0163162_11805529	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	699	Open in IMG/M
3300013307\|Ga0157372_11053624	Not Available	941	Open in IMG/M
3300013308\|Ga0157375_11331727	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	845	Open in IMG/M
3300014157\|Ga0134078_10687811	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	500	Open in IMG/M
3300014325\|Ga0163163_11249898	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	805	Open in IMG/M
3300015371\|Ga0132258_10836297	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2322	Open in IMG/M
3300015372\|Ga0132256_100985414	Not Available	958	Open in IMG/M
3300017789\|Ga0136617_11095002	All Organisms → cellular organisms → Bacteria	602	Open in IMG/M
3300017792\|Ga0163161_11235639	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	647	Open in IMG/M
3300018081\|Ga0184625_10040494	All Organisms → cellular organisms → Bacteria	2312	Open in IMG/M
3300018429\|Ga0190272_10038821	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2658	Open in IMG/M
3300018429\|Ga0190272_11435620	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	696	Open in IMG/M
3300018432\|Ga0190275_10243150	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1731	Open in IMG/M
3300018469\|Ga0190270_10515743	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1143	Open in IMG/M
3300018469\|Ga0190270_11957288	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae	644	Open in IMG/M
3300018891\|Ga0193610_1148451	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	566	Open in IMG/M
3300018920\|Ga0190273_10652892	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	806	Open in IMG/M
3300018920\|Ga0190273_12284221	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	511	Open in IMG/M
3300024055\|Ga0247794_10109738	All Organisms → cellular organisms → Bacteria	829	Open in IMG/M
3300025908\|Ga0207643_10258043	All Organisms → cellular organisms → Bacteria	1075	Open in IMG/M
3300025908\|Ga0207643_10917039	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	567	Open in IMG/M
3300025927\|Ga0207687_11030933	Not Available	706	Open in IMG/M
3300025932\|Ga0207690_10285809	All Organisms → cellular organisms → Bacteria → Proteobacteria	1286	Open in IMG/M
3300025941\|Ga0207711_11708160	Not Available	573	Open in IMG/M
3300025961\|Ga0207712_11510807	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Actinoplanes → Actinoplanes rishiriensis	602	Open in IMG/M
3300025961\|Ga0207712_12028187	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	515	Open in IMG/M
3300025972\|Ga0207668_11277174	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Actinoplanes → Actinoplanes rishiriensis	661	Open in IMG/M
3300026035\|Ga0207703_11741116	Not Available	599	Open in IMG/M
3300026035\|Ga0207703_11780426	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	592	Open in IMG/M
3300026075\|Ga0207708_10396583	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1140	Open in IMG/M
3300026118\|Ga0207675_100071457	All Organisms → cellular organisms → Bacteria	3245	Open in IMG/M
3300026121\|Ga0207683_10900053	All Organisms → cellular organisms → Bacteria	822	Open in IMG/M
3300027907\|Ga0207428_10825720	Not Available	658	Open in IMG/M
3300028379\|Ga0268266_11454320	All Organisms → cellular organisms → Bacteria	661	Open in IMG/M
3300028381\|Ga0268264_11141473	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Actinoplanes → Actinoplanes rishiriensis	788	Open in IMG/M
3300028755\|Ga0307316_10181570	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Thermoleophilales → Thermoleophilaceae → unclassified Thermoleophilaceae → Thermoleophilaceae bacterium	755	Open in IMG/M
3300028791\|Ga0307290_10351392	Not Available	540	Open in IMG/M
3300028824\|Ga0307310_10325810	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Thermoleophilales → Thermoleophilaceae → unclassified Thermoleophilaceae → Thermoleophilaceae bacterium	752	Open in IMG/M
3300030336\|Ga0247826_11039538	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → environmental samples → uncultured Solirubrobacteraceae bacterium	652	Open in IMG/M
3300031824\|Ga0307413_11074480	Not Available	694	Open in IMG/M
3300031873\|Ga0315297_10391541	Not Available	1165	Open in IMG/M
3300031901\|Ga0307406_11836141	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	539	Open in IMG/M
3300031938\|Ga0308175_102583883	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	568	Open in IMG/M
3300031939\|Ga0308174_10825231	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	780	Open in IMG/M
3300031996\|Ga0308176_10389906	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter	1387	Open in IMG/M
3300032080\|Ga0326721_10412558	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	785	Open in IMG/M
3300032126\|Ga0307415_101438698	Not Available	657	Open in IMG/M
3300033551\|Ga0247830_10624161	All Organisms → cellular organisms → Bacteria	854	Open in IMG/M
3300034006\|Ga0334934_000685	All Organisms → cellular organisms → Bacteria	7484	Open in IMG/M
3300034149\|Ga0364929_0290344	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	557	Open in IMG/M
3300034384\|Ga0372946_0568249	Not Available	549	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	57.26%
Host-Associated	Host-Associated	42.74%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	49.19%
Plants	Host-Associated → Plants	42.74%
Aquatic	Environmental → Aquatic	8.06%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	48.39%
Rhizosphere	Host-Associated → Plants → Rhizosphere	27.42%
Rhizoplane	Host-Associated → Plants → Rhizoplane	13.71%
Freshwater	Environmental → Aquatic → Freshwater	7.26%
Roots	Host-Associated → Plants → Roots	1.61%
Sediment	Environmental → Aquatic → Sediment	0.81%
Floodplain	Environmental → Terrestrial → Floodplain	0.81%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	33.06%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	17.74%
Loam	Environmental → Terrestrial → Soil → Loam	12.90%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	10.48%
Soil	Host-Associated → Plants → Rhizosphere → Soil	9.68%
Ice	Environmental → Aquatic → Freshwater → Ice	5.65%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	2.42%
Sand	Environmental → Terrestrial → Soil → Sand	1.61%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	1.61%
Lake	Environmental → Aquatic → Freshwater → Lake	0.81%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	0.81%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.81%
Soil Crust	Environmental → Terrestrial → Soil → Soil Crust	0.81%
Sediment	Environmental → Terrestrial → Floodplain → Sediment	0.81%
Soil	Host-Associated → Plants → Rhizoplane → Soil	0.81%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	21.77%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	17.74%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	10.48%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	9.68%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	6.45%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	6.45%
Unclassified	Environmental → Aquatic → Freshwater → Ice → Unclassified	5.65%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	4.84%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	4.03%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	2.42%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	1.61%
Desert	Environmental → Terrestrial → Soil → Sand → Desert	1.61%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	1.61%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment	0.81%
Unclassified	Environmental → Aquatic → Freshwater → Groundwater → Unclassified	0.81%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.81%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	0.81%
Unclassified	Environmental → Terrestrial → Soil → Soil Crust → Unclassified	0.81%
Unclassified	Environmental → Terrestrial → Floodplain → Sediment → Unclassified	0.81%
Unclassified	Host-Associated → Plants → Rhizoplane → Soil → Unclassified	0.81%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	11.29%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	6.45%
Polar Desert Sand	Environmental → Aquatic → Freshwater → Ice → Unclassified → Polar Desert Sand	5.65%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	4.84%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	4.84%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	4.84%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	4.84%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	4.03%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	4.03%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	3.23%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	3.23%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	3.23%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	3.23%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	3.23%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	2.42%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	2.42%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	2.42%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere	2.42%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	1.61%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	1.61%
Soil	Environmental → Terrestrial → Soil → Sand → Desert → Soil	1.61%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	1.61%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	1.61%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	1.61%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	1.61%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment	0.81%
Soil	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil	0.81%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.81%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.81%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.81%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.81%
Biocrust	Environmental → Terrestrial → Soil → Soil Crust → Unclassified → Biocrust	0.81%
Sediment	Environmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment	0.81%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.81%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere	0.81%
Miscanthus Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere	0.81%
Switchgrass Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Switchgrass Rhizosphere	0.81%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.81%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.81%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.81%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2209111000	Soil microbial communities from Colorado Plateau, Greene Butte sample - Dark Crust, Colorado Plateau, Green Butte	Environmental	Open in IMG/M
3300000955	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300001305	Grasslands soil microbial communities from Hopland, California, USA	Environmental	Open in IMG/M
3300001686	Grasslands soil microbial communities from Hopland, California, USA	Environmental	Open in IMG/M
3300002568	Grasslands soil microbial communities from Hopland, California, USA - 2	Environmental	Open in IMG/M
3300004081	Grasslands soil microbial communities from Hopland, California, USA - 2 (version 2)	Environmental	Open in IMG/M
3300004153	Grasslands soil microbial communities from Hopland, California, USA (version 2)	Environmental	Open in IMG/M
3300005327	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG	Host-Associated	Open in IMG/M
3300005344	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG	Host-Associated	Open in IMG/M
3300005347	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG	Host-Associated	Open in IMG/M
3300005367	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG	Host-Associated	Open in IMG/M
3300005438	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-2 metaG	Environmental	Open in IMG/M
3300005441	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG	Environmental	Open in IMG/M
3300005466	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3L metaG	Environmental	Open in IMG/M
3300005544	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG	Environmental	Open in IMG/M
3300005549	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG	Environmental	Open in IMG/M
3300005564	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG	Host-Associated	Open in IMG/M
3300005578	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2	Host-Associated	Open in IMG/M
3300005587	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_103	Environmental	Open in IMG/M
3300005615	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-3 metaG	Environmental	Open in IMG/M
3300005719	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2	Host-Associated	Open in IMG/M
3300005834	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2	Host-Associated	Open in IMG/M
3300005840	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2	Host-Associated	Open in IMG/M
3300006034	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_105	Environmental	Open in IMG/M
3300006058	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1	Host-Associated	Open in IMG/M
3300006358	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2	Host-Associated	Open in IMG/M
3300006797	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_108	Environmental	Open in IMG/M
3300006852	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2	Host-Associated	Open in IMG/M
3300006954	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control	Environmental	Open in IMG/M
3300009094	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)	Host-Associated	Open in IMG/M
3300009098	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG	Host-Associated	Open in IMG/M
3300009148	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG	Host-Associated	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300009177	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG	Host-Associated	Open in IMG/M
3300009789	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot28	Environmental	Open in IMG/M
3300010037	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot25	Environmental	Open in IMG/M
3300010042	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105B	Environmental	Open in IMG/M
3300010147	Soil microbial communities from California, USA to study soil gas exchange rates - BB-CA-RED metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010301	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_2_09082015	Environmental	Open in IMG/M
3300010304	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_09182015	Environmental	Open in IMG/M
3300010371	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1	Environmental	Open in IMG/M
3300010375	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG	Host-Associated	Open in IMG/M
3300010399	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3	Environmental	Open in IMG/M
3300011119	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG	Host-Associated	Open in IMG/M
3300012045	Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ449 (21.06)	Environmental	Open in IMG/M
3300012093	Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ611 (21.06)	Environmental	Open in IMG/M
3300012186	Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ416 (21.06)	Environmental	Open in IMG/M
3300012187	Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ448 (21.06)	Environmental	Open in IMG/M
3300012188	Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ330 (21.06)	Environmental	Open in IMG/M
3300012200	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_20_16 metaG	Environmental	Open in IMG/M
3300012212	Combined assembly of Hopland grassland soil	Host-Associated	Open in IMG/M
3300012350	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_60_16 metaG	Environmental	Open in IMG/M
3300012469	Combined assembly of Soil carbon rhizosphere	Host-Associated	Open in IMG/M
3300012680	Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ224A (23.06)	Environmental	Open in IMG/M
3300012683	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz2.16 metaG	Environmental	Open in IMG/M
3300012961	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_202_MG	Environmental	Open in IMG/M
3300012977	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_20cm_5_24_1 metaG	Environmental	Open in IMG/M
3300012987	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_243_MG	Environmental	Open in IMG/M
3300012988	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_242_MG	Environmental	Open in IMG/M
3300013306	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG	Host-Associated	Open in IMG/M
3300013307	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG	Host-Associated	Open in IMG/M
3300013308	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG	Host-Associated	Open in IMG/M
3300014157	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_20cm_2_24_1 metaG	Environmental	Open in IMG/M
3300014325	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG	Host-Associated	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300017789	Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ322 (21.06)	Environmental	Open in IMG/M
3300017792	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG	Host-Associated	Open in IMG/M
3300018081	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_30_b1	Environmental	Open in IMG/M
3300018429	Populus adjacent soil microbial communities from riparian zone of Shoshone River, Wyoming, USA - 504 T	Environmental	Open in IMG/M
3300018432	Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 550 T	Environmental	Open in IMG/M
3300018469	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 320 T	Environmental	Open in IMG/M
3300018891	Soil crust microbial communities from Colorado Plateau, Utah, USA - early stage, 18 hrs after wetting v1	Environmental	Open in IMG/M
3300018920	Populus adjacent soil microbial communities from riparian zone of Shoshone River, Wyoming, USA - 504 IS	Environmental	Open in IMG/M
3300024055	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S046-202B-6	Environmental	Open in IMG/M
3300025908	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025927	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025932	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025941	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025961	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025972	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026035	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026075	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300026118	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026121	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300027907	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes)	Host-Associated	Open in IMG/M
3300028379	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300028381	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300028755	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_356	Environmental	Open in IMG/M
3300028791	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_144	Environmental	Open in IMG/M
3300028824	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_197	Environmental	Open in IMG/M
3300030336	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day1	Environmental	Open in IMG/M
3300031824	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2	Host-Associated	Open in IMG/M
3300031873	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G15_0	Environmental	Open in IMG/M
3300031901	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2	Host-Associated	Open in IMG/M
3300031938	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.C.R1	Environmental	Open in IMG/M
3300031939	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.P.R2	Environmental	Open in IMG/M
3300031996	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.C.R2	Environmental	Open in IMG/M
3300032080	Soil microbial communities from Southern Great Plains, Lamont, Oklahoma, United States - SGP_1_2016	Environmental	Open in IMG/M
3300032126	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2	Host-Associated	Open in IMG/M
3300033551	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day5	Environmental	Open in IMG/M
3300034006	Biocrust microbial communities from Mojave Desert, California, United States - 30SMC	Environmental	Open in IMG/M
3300034149	Sediment microbial communities from East River floodplain, Colorado, United States - 20_j17	Environmental	Open in IMG/M
3300034384	Forest soil microbial communities from Eldorado National Forest, California, USA - SNFC_MG_KNG_2.2	Environmental	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
2210070382	2209111000	Soil	AAVTDGSARAYARAVFYAALAAWAWQELVGGVNWVRRAIGAAGLVYVVAKLATALGG
JGI1027J12803_1064391612	3300000955	Soil	AAFFTALAAWAWGEMATGANWVRRALGVAGLVYVVVKVGLALGA*
JGI1027J12803_1078466752	3300000955	Soil	WAWGEMAAGTNWVRRALGVAGLVYVVIKVGVALGA*
JGI10216J12902_1129700013	3300000956	Soil	ATFYTGLAAWAWQELEDGVNWARRAIGAAGLIFVIARIAEALRT*
C688J14111_103048302	3300001305	Soil	AVFYAGLAVWGWKELEDGANWLRRALGVGGVAYVVVKLGAALGG*
C688J18823_108221602	3300001686	Soil	APLLVALGGWVVAAVTHGSVHAYARAVFYAGLAVWGWKELEDGANWLRRALGVGGVAYVVVKLGAALGG*
C688J35102_1179695001	3300002568	Soil	VAAVSHGSVHSYARAAFYVGLAAWAWLELADGTNWARRVLGAAGLVYVVITIEAALAG*
C688J35102_1183163741	3300002568	Soil	HAYSRAAFYAALAAWAWAEAASGDNWFRRALGVGGLFYVIAKLAVAFGA*
Ga0063454_1003962962	3300004081	Soil	HAYARATFYTGLAAWAWIELTDGTNRFRRALGAVGLVYVVIKVGVALGA*
Ga0063454_1018715662	3300004081	Soil	AGLIVAALTDDPVRPYAHGVFYAGLAAWGYEELTAGANWFRRALGAGGLVYVVIRVGTALKS*
Ga0063455_1012214061	3300004153	Soil	GLAAWAWIELADGTNWFRRALGAGGLVYVVMKVGVALGA*
Ga0063455_1016248781	3300004153	Soil	HAYARSLFYAGLAVWAWEELVSGANWVRRALGAAGFVYVVAKLGAALGA*
Ga0070658_115935681	3300005327	Corn Rhizosphere	ALGGWLAAVLTNGSSHAYARATFYSGLAAWAWEELADGTNWLRRAFGAAGLAYVIVKVGHALGA*
Ga0070661_1014726051	3300005344	Corn Rhizosphere	MTDGSVHAYARAAFYAGLAAWAWEELVSGVNWVRRALGAGGLIYVVAKIAAALRA*
Ga0070668_1021178661	3300005347	Switchgrass Rhizosphere	DALHDYARAAFYAGLAAWAWDELADGANWVRRALGAAGLVYVVVKVGAALGA*
Ga0070667_1007647082	3300005367	Switchgrass Rhizosphere	GWLLAELTDGSVHAYARATFYAGLAAWAWEELAGGVNWVRRAFGLGGLVYVVVKVGEALGA*
Ga0070701_111695281	3300005438	Corn, Switchgrass And Miscanthus Rhizosphere	RAIAVMTDGSVHAYARAAFYAGLAAWATEELVSGLNWVRRALGAAGLIYVVNKVAAALRA
Ga0070700_1010563401	3300005441	Corn, Switchgrass And Miscanthus Rhizosphere	AWAWAWAWAELVSGVNWVRRAIGAAGLVYVAGRVGAALEG*
Ga0070700_1015864001	3300005441	Corn, Switchgrass And Miscanthus Rhizosphere	MTDGSVHAYARAAFYAGLAAWAWEELVSGVNWMRRALGAGGLIYVVAKIAAALRA*
Ga0070685_102752191	3300005466	Switchgrass Rhizosphere	ALAGWLLAELTDGSVHAYARATFYAGLAAWAWEELAGGVNWVRRAFGLGGLVYVVVKVGEALGA*
Ga0070686_1003872601	3300005544	Switchgrass Rhizosphere	AATDGSIHAYARSVFCAGLAVWAWEELVGGANWFRRALGAAGLVYVVVKLGAAFGA*
Ga0070704_1001597853	3300005549	Corn, Switchgrass And Miscanthus Rhizosphere	ALGGWLVAALTHGSVHAYARAAFYAGLTAWAWEELAEGVNWVRRALGAAGLVYVVVKVGAALGA*
Ga0070664_1009933663	3300005564	Corn Rhizosphere	MTDGSVHAYARAAFYAGLAAWATEELVSGLNWVRRALGAAGLIYVVNKVAAALRA*
Ga0068854_1020496011	3300005578	Corn Rhizosphere	GWLVAALTHGSVHAYARAAFYAGLTAWAWEELAEGVNWVRRALGAAGLVYVVVKVGAALGA*
Ga0066654_103193342	3300005587	Soil	VALSGWLLAELTEGSVHFYARGAFYAALGVWAWEEATAGANWARRLLGAAGLVYVVVQIGLALGA*
Ga0070702_1016982961	3300005615	Corn, Switchgrass And Miscanthus Rhizosphere	AYARAVFYAALAVWAWEELASGVNWARRVLGAAGLVFVVLRIGAALGG*
Ga0068861_1005623851	3300005719	Switchgrass Rhizosphere	AAMTDGSVHAYARAAFYAGLAAWAWEELVSGVNWMRRALGAGGLIYVVAKIAAALRA*
Ga0068861_1021012081	3300005719	Switchgrass Rhizosphere	YTALAAWAWTELADGTNWFRRALGAGGLVYVVIKIGVALGA*
Ga0068851_108016631	3300005834	Corn Rhizosphere	HAYARAAFYAGLAAWATEELVSGLNWVRRALGAGGLIYVVGKLAAALRA*
Ga0068870_112223112	3300005840	Miscanthus Rhizosphere	GLAAWAWEELTGGVNWLRRTFGAAGLVYVVVSIGAALKA*
Ga0066656_104491151	3300006034	Soil	GLAAWAWEELTGGANWVRRALGVGGLIYVVVKVGAALGA*
Ga0075432_103001061	3300006058	Populus Rhizosphere	IHAYARSVFYAGLAVWAWEELVSGANWFRRSLGAAGLVYVVAKLGAAFAA*
Ga0068871_1016837292	3300006358	Miscanthus Rhizosphere	VHAYARAAFYAGLTAWAWEELAEGVNWVRRALGAAGLVYVVVKVGAALGA*
Ga0066659_112219062	3300006797	Soil	FYAGLAAWAWEELAGGVNWVRRSLGAAGLVYVVVKVGAALGA*
Ga0075433_109305961	3300006852	Populus Rhizosphere	RAAFYAGLSAWAWEELAGGVNWVRRALGAAGLVYVVVKVGAALGA*
Ga0079219_104874352	3300006954	Agricultural Soil	VHFYARGAFYAALGVWAWEEVAAGANWARRLLGAAGLVYVVVKIGLALGA*
Ga0111539_103404063	3300009094	Populus Rhizosphere	WAWEELTGGVNWLRRVFGATGLIYVVVRIGSALDA*
Ga0111539_113167332	3300009094	Populus Rhizosphere	VALAGLLVAAVTDGSAHAYARAVFYAALAVWAWEELASGVNWARRVLGAAGLVFVVLRIGAALGG*
Ga0105245_132300672	3300009098	Miscanthus Rhizosphere	VALVGRAIAVMTDGSVHAYARAAFYAGLAAWAWEELVSGLNWVRRALGAAGLIYVAETVATALRA*
Ga0105243_112396212	3300009148	Miscanthus Rhizosphere	VALAGLLVSAVTDGSAHAYARAVFYAALAVWAWEELASGVNWARRVLGAAGLVFVVLRIGAALGG*
Ga0111538_104041821	3300009156	Populus Rhizosphere	AWAWEELAEGVNWVRRALGAAGLVYVVVKVGAALGA*
Ga0105248_115476771	3300009177	Switchgrass Rhizosphere	YAGLTAWAWEELAEGVNWVRRALGAAGLVYVVVKVGAALGA*
Ga0105248_130382171	3300009177	Switchgrass Rhizosphere	GWLVAALTDGSVHSYARAVFYAGLAIWAWEELVGGANWVRRALGAGGLFYVVVKVGAA*
Ga0126307_102609473	3300009789	Serpentine Soil	GAWAWEELAGGVNWVRRVVGAGGLVYVVLRIGGELAGD*
Ga0126304_104002783	3300010037	Serpentine Soil	LPNAPLWVALGGRTIAVMTGGSVHAYARAAFYAGLAAWAWEELVSGVNWVRRALGAAGLLYVVDKVAAALRA*
Ga0126314_112878081	3300010042	Serpentine Soil	AHAYARAMFYAALGAWAWEELAGGVNWVRRVVGAGGLVYVVLRIGGELAGD*
Ga0126319_12585962	3300010147	Soil	GASLLASLTTGSVHFYARAAFYTGLAAWAWGELAAGANWARRALGAGGLVYLVVNLGIALGA*
Ga0134070_101902341	3300010301	Grasslands Soil	THGSAHAYARSTFYTGLAAWAWKEVADGTTWFRRVLGAGGLVYVVIKVGVALGA*
Ga0134088_102947141	3300010304	Grasslands Soil	TFYTGLAAWAWKEVADGTTWFRRVLGAGGLVYVVIKVGVALGT*
Ga0134125_118891442	3300010371	Terrestrial Soil	MTDGSVHAYARAAFYAGLAAWATEELVSGLNWVRRALGAGGLIYVVDKLAAALRA*
Ga0105239_121655532	3300010375	Corn Rhizosphere	LPNAPLWVALGGRAIAVMTDGSVHAYARAAFYAGLAAWAWDELVSGVNWVRRALGAAGLIYVAETVATALRA*
Ga0105239_132893642	3300010375	Corn Rhizosphere	HAYARATFYAGLAAWAWEELAGGVNWVRRAFGLGGLVYVVVKVGEALGA*
Ga0134127_113844681	3300010399	Terrestrial Soil	AAMTDGSVHAYARAAFYAGLAAWATEELVSGLNWVRRALGAAGLIYVVNKVAAALRA*
Ga0105246_122424072	3300011119	Miscanthus Rhizosphere	MTDGSVHAYARAAFYAGLAAWATEELVSGLNWVRRALGAGGLIYVVGKLAAALRA*
Ga0136623_102013621	3300012045	Polar Desert Sand	AGLAAWAWTELAGGVNWVRRALGCAGLVYVVIKIGAALRA*
Ga0136632_102531032	3300012093	Polar Desert Sand	SVHAHAAFYAGLAAWAWTELAGGVNWVRRALGCAGLVYVVIKIGAALRA*
Ga0136620_101338781	3300012186	Polar Desert Sand	LPNAPLWVALGGRAIAVMTDGSVHAYACAAFYAGLAAWAWAELVSGVNWVRRALGAGGLIYVVDKVAAALRA*
Ga0136622_101194982	3300012187	Polar Desert Sand	LPNAPLWVALGGRAIAVMTDGSVHAYARAAFYAGLAAWAWAELVSGVNWVRRALGAGGLIYVVDKVAAALRA*
Ga0136618_101263771	3300012188	Polar Desert Sand	VMTDGSVHAYARAAFYAGLAAWAWAELVSGVNWVRRALGAGGLIYVVDKVAAALRA*
Ga0137382_101675842	3300012200	Vadose Zone Soil	MDGPVHSYARAVFYAGLAGWAWEELLDGANWVRRALGAGGLVYVVVKVGAALGA*
Ga0137382_107446852	3300012200	Vadose Zone Soil	HAYARAVFYAGLAAWAWEELAGGANWVRRALGAGGLVYVVVKVGAALGA*
Ga0150985_1109330082	3300012212	Avena Fatua Rhizosphere	VAGLTAGSTHAYTRMTFYTGLAAWASIDLAVGANWYRRPLCAGGLVCVVVKVGDALGA*
Ga0150985_1201933281	3300012212	Avena Fatua Rhizosphere	LFYAALAAWAWEELVGGANRVRRALGAAGFIYVVAKLGAALGA*
Ga0137372_110596902	3300012350	Vadose Zone Soil	GLAAWAWEELTGGANWVRRALGAGGLFYVVVKVAAALGA*
Ga0150984_1180511294	3300012469	Avena Fatua Rhizosphere	AWEEVSDGANWARRLLGAAGLVYVIAKVGAALSS*
Ga0150984_1201566392	3300012469	Avena Fatua Rhizosphere	YVGLSAWGWEEVASGANWVRRSFGAAGLVYVIVEVGRAL*
Ga0150984_1235362283	3300012469	Avena Fatua Rhizosphere	LVAAATHGSVHAYARSLFYAGLGAWAWEEPVSGANWVRRALGAAGFIYVVAKLGVALEA*
Ga0136612_100009357	3300012680	Polar Desert Sand	LPNAPLWVALGGQLVAEMTDGSVHAYARAAFYAGLAAWAWEELVSGVNWVRRALGAGGLIYVVDKVAAALRA*
Ga0137398_110398392	3300012683	Vadose Zone Soil	AFFTALAAWAWGEVADGANWVRRALGVAGLVYVVIKVGMALGA*
Ga0164302_116250501	3300012961	Soil	AYARAVFYAGLAAWAWAELIDGVNWVRRAIGAAGLVHVVARVGAGSKGDAW*
Ga0134087_104853652	3300012977	Grasslands Soil	WAWKEVADGTTWFRRVLGAGGLVYVVIKVGVALGA*
Ga0164307_109835182	3300012987	Soil	AGLTAWAWEELTGGVNWVRRALGAAGLVYVVVKVGAALGA*
Ga0164306_107013173	3300012988	Soil	YVALTAWAWEEVTSGVNWARRLIGAAGLVFVVLRVGAALGA*
Ga0163162_118055291	3300013306	Switchgrass Rhizosphere	VGRAIAVMTDGSVHAYARAAFYAGLAAWATEELVSGLNWVRRALGAAGLIYVVNKVAAALRA*
Ga0157372_110536242	3300013307	Corn Rhizosphere	LWVALGGRAIAVMTDGSVHAYARAAFYAGLAAWAWAELVSGVNWVRRALGAAGLIYVAETVATALRA*
Ga0157375_113317272	3300013308	Miscanthus Rhizosphere	AGLLVAAATSGSVHAYARGVFYAGLAAWASEELIGGVNWVRRAIGAAGLVYVVARVGAALEG*
Ga0134078_106878111	3300014157	Grasslands Soil	PLLAALGGWVIAELTDGSSHAYARAAFCVALAAWAWEELANGANWVRRALGAGGLLYVVVKVGAALGA*
Ga0163163_112498981	3300014325	Switchgrass Rhizosphere	RAAFYAGLTAWAWEELAEGVNWVRRALGAAGLVYVVVKVGAALGA*
Ga0132258_108362972	3300015371	Arabidopsis Rhizosphere	MGVEELTEGVNWVRRALGAAGLVYVVAKVGAALGA*
Ga0132256_1009854141	3300015372	Arabidopsis Rhizosphere	YVGLAAWAWGELASGVNWVRRALGAGGLGYVVVKLGAAFGG*
Ga0136617_110950022	3300017789	Polar Desert Sand	LAAWAWTELAGGVNWVRRALGCAGLVYVVIKIGAALRA
Ga0163161_112356392	3300017792	Switchgrass Rhizosphere	AAFYAGLAAWASEELIGGVNWVRRAIGAAGLVYVVARVGAALEG
Ga0184625_100404942	3300018081	Groundwater Sediment	MGGWLVAALTDGAVHSYARAAFYVGLAAWAWEELAGGVNWVRRALGAGGLVYVVVKVGAALGA
Ga0190272_100388215	3300018429	Soil	VAQLPNAPLWVAFGGRAIAVMTDGSVHAYARAAFYAGLAAWAREELVSGVNWVRRALGAAGLIYVVDKVAEALRV
Ga0190272_114356203	3300018429	Soil	NPQLWLALAGWVVALPTDGSVHAYARAAFYAGLAAWGLGELTSGINLARRAMGAAGLLYAVVKVADALGA
Ga0190275_102431502	3300018432	Soil	VAAVTDGSVHSYARAAFYTGIAAWAWDELAGGANWVRRALGGAGLLYVVVKVATALGA
Ga0190270_105157432	3300018469	Soil	AYARAVFYAALAAWAWQEMATGVNWARRLLGAAGLLLVVVRVGAAL
Ga0190270_119572882	3300018469	Soil	TDGSVHAYARAAFYAGLAAWAWEELVSGVNWVRRALGAGGLIYVVVKVAAALRA
Ga0193610_11484511	3300018891	Soil	VVADGSVHAYARGLFYAALAAWAWQELVDGVNWVRRAIGAAGLVYVVVQVGAVVGG
Ga0190273_106528922	3300018920	Soil	SVHSYARAAFYAGLAAWAWEEVVSGVNWVRRALGAGGLIYVVDKVAEALRV
Ga0190273_122842211	3300018920	Soil	VWVALGGGAIAVMTDGSGQAYARAVFYAGLAVWAGEELVSGVNWVRRALGAGGLIYVVDKVAAALRA
Ga0247794_101097381	3300024055	Soil	AAATHGSVHAYARSLFYAGFAAWAWEELVSGANWVRRALGAAGFIYVVAKLGVALEA
Ga0207643_102580431	3300025908	Miscanthus Rhizosphere	VALVGRAIAVMTDGSVHAYARAAFYAGLAAWATEELVSGLNWVRRALGAAGLIYVVNKVAAALRA
Ga0207643_109170391	3300025908	Miscanthus Rhizosphere	AAATDGSIHAYARSVFCAGLAVWAWEELVSGANWFRRALGVAGLVYVVAKLGAAFGA
Ga0207687_110309332	3300025927	Miscanthus Rhizosphere	ALFYAGFAAWAWEELFSGANWVRRALGAAGFIYVVAKLGVALEA
Ga0207690_102858093	3300025932	Corn Rhizosphere	RAAFYAGLAAWAWDELADGANWVRRALGAAGLVYVVVKVGAALGA
Ga0207711_117081601	3300025941	Switchgrass Rhizosphere	SYARAVFYAGLAIWAWEELVGGANWVRRALGAGGLFYVVVKVGAA
Ga0207712_115108071	3300025961	Switchgrass Rhizosphere	HAYARAAFYAGLAAWAWGELAGGVNWVRRALGAAGLVYVVVKVGAALGA
Ga0207712_120281871	3300025961	Switchgrass Rhizosphere	DGSIHAYARAVFCAGLAVWAWEELVSGANWFRRALGAAGLVYVVVKLGAAFGA
Ga0207668_112771742	3300025972	Switchgrass Rhizosphere	LAAWAWGELAGGVNWVRRALGAAGLVYVVVKVGAALGA
Ga0207703_117411161	3300026035	Switchgrass Rhizosphere	THGSVHAYARSLFYAGFAAWAWEELFSGANWVRRALGAAGFIYVVAKLGVALQA
Ga0207703_117804262	3300026035	Switchgrass Rhizosphere	AYARAVFYAGLAAWAWGELAGGVNWVRRALGAAGLVYVVVKVGAALGA
Ga0207708_103965833	3300026075	Corn, Switchgrass And Miscanthus Rhizosphere	VLTEGSAHAYARATFYTGLAAWAWLELADGTNWFRRALGAGGLVYVVMKVGVALGA
Ga0207675_1000714571	3300026118	Switchgrass Rhizosphere	WAWEELTDGVNWLRRTVGAAGLAYAVVSIGSALKG
Ga0207683_109000532	3300026121	Miscanthus Rhizosphere	VAEATGDGAHDYARAVFYAGLTVWAWEELTDGDNLLRRALGAGGLAYVVAKVGAAL
Ga0207428_108257202	3300027907	Populus Rhizosphere	YARSVFYAGLAVWAWEELVSGANWFRRSLGAAGLVYVVAKLGAAFAA
Ga0268266_114543202	3300028379	Switchgrass Rhizosphere	VFLAGLAAWAWEELTGGVNWFRRVVGAAGLVYVVVSIGSALKR
Ga0268264_111414732	3300028381	Switchgrass Rhizosphere	AYARAAFYAGLAAWAWGELAGGVNWVRRALGAAGLVYVVVKVGAALGA
Ga0307316_101815703	3300028755	Soil	TDGSLHFYARAVFYAGLAAWAWLELADGANWVRRALGAGGLVYVVVKVGAALGA
Ga0307290_103513921	3300028791	Soil	FYAGLAAWAWEELAGGVNWVRRALGAGGLVYVVVKVGAALGA
Ga0307310_103258101	3300028824	Soil	AALTDGSAHAYARAAFYAGLAAWAWEELAGGVNWVRRALGAGGLVYVVLKVGAAL
Ga0247826_110395382	3300030336	Soil	PNAPLTVALGAWLVAALTNDAIHDYARAAFYAGLAAWAWGELAGGVNWVRRALGAAGLVYVVVKVGAALGA
Ga0307413_110744801	3300031824	Rhizosphere	SVHAYARAAFYAGLAAWAWQELVSGVNWVRRALGAAGLIYVVDKAAAALRA
Ga0315297_103915411	3300031873	Sediment	LVAALTEGSVHAYARAVFYAGLAAWAWEELAGGANWVRRALGAGGLIYVVAKVGAALGA
Ga0307406_118361412	3300031901	Rhizosphere	ALAAFYAGLAAWAWEELVSGVNWVRRALGAGGLIYVVDKAAAALRA
Ga0308175_1025838831	3300031938	Soil	AAWAWEELAGGVNWVRRALGCAGLVYVVVKIGAALRA
Ga0308174_108252313	3300031939	Soil	VHAYARATFYTGLAAWAWLELTDGTNWFRRGLGAGGLVYVVIQVGAALGA
Ga0308176_103899061	3300031996	Soil	LVALGGWLVAALADGSAHAYARATFYTGLAAWAWEELADGTNGLRRAFGAAGLGYVIVKVGHALGA
Ga0326721_104125581	3300032080	Soil	ARSLFYAGLAAWAWEEMVSGANWVRRALGAAGFIYVVAKLGAAFGA
Ga0307415_1014386981	3300032126	Rhizosphere	AYARSLFYAGLAAWAWEEVVSGANWVRRALGAAGFIYVVAKLGAALGA
Ga0247830_106241611	3300033551	Soil	AVMTDGSVHAYARAAFYAGLAAWAWEELVSGLNWVRRALGAAGLIYVVNKVAAALRA
Ga0334934_000685_2_133	3300034006	Biocrust	RAAFYAGLSAWAWLELADGTNAARRAMGAAGLAYVVVRLGAAL
Ga0364929_0290344_17_235	3300034149	Sediment	LPNAPLWVALGGRAIAVMSDGSVHAYARAAFYAGLAAWAWEELISGVNWVRRALGAAGLIYVVDKLAAALRA
Ga0372946_0568249_2_172	3300034384	Soil	ALTDGSVHFYARAALYASVSAWAWGELADGANWVRRALGAAGFVYVVVKLGTALGA

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F068882

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Structural matches with SCOPe domains

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences