NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Metagenome / Metatranscriptome Family F068501

Metagenome / Metatranscriptome Family F068501

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
Select file to download:
   Download


Overview

Basic Information
Family ID F068501
Family Type Metagenome / Metatranscriptome
Number of Sequences 124
Average Sequence Length 60 residues
Representative Sequence MRTLIVLVSVVLSGPSVADSVRHLSVPERFWGTWAPSPDLCRDKKSIFVVSEKGYVTSEA
Number of Associated Samples 112
Number of Associated Scaffolds 124

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 81.45 %
% of genes near scaffold ends (potentially truncated) 95.97 %
% of genes from short scaffolds (< 2000 bps) 91.13 %
Associated GOLD sequencing projects 108
AlphaFold2 3D model prediction Yes
3D model pTM-score0.24

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
Powered by Skylign

Most Common Taxonomy
Group Bacteria (100.000 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil
(22.581 % of family members)
Environment Ontology (ENVO) Unclassified
(26.613 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
(41.129 % of family members)


 ⦗Top⦘

Multiple Sequence Alignments

Select alignment to view:      

 ⦗Top⦘

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: Yes Secondary Structure distribution: α-helix: 19.32%    β-sheet: 6.82%    Coil/Unstructured: 73.86%
Feature Viewer
Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  		pTM-score: 0.24
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

 ⦗Top⦘

Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 124 Family Scaffolds
PF08857ParBc_2 32.26
PF03401TctC 18.55
PF01545Cation_efflux 2.42
PF01593Amino_oxidase 1.61
PF00919UPF0004 0.81
PF03330DPBB_1 0.81
PF07978NIPSNAP 0.81
PF00216Bac_DNA_binding 0.81
PF02775TPP_enzyme_C 0.81
PF13365Trypsin_2 0.81
PF04430DUF498 0.81
PF02518HATPase_c 0.81

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 124 Family Scaffolds
COG4318Uncharacterized conserved proteinFunction unknown [S] 32.26
COG3181Tripartite-type tricarboxylate transporter, extracytoplasmic receptor component TctCEnergy production and conversion [C] 18.55
COG0053Divalent metal cation (Fe/Co/Zn/Cd) efflux pumpInorganic ion transport and metabolism [P] 2.42
COG1230Co/Zn/Cd efflux system componentInorganic ion transport and metabolism [P] 2.42
COG3965Predicted Co/Zn/Cd cation transporter, cation efflux familyInorganic ion transport and metabolism [P] 2.42
COG0621tRNA A37 methylthiotransferase MiaBTranslation, ribosomal structure and biogenesis [J] 0.81
COG0776Bacterial nucleoid DNA-binding protein IHF-alphaReplication, recombination and repair [L] 0.81
COG1504Uncharacterized conserved protein, DUF498 domainFunction unknown [S] 0.81
COG3737Uncharacterized protein, contains Mth938-like domainFunction unknown [S] 0.81

 ⦗Top⦘

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
All OrganismsrootAll Organisms100.00 %
UnclassifiedrootN/A0.00 %

Visualization
Powered by ApexCharts

Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300000655|AF_2010_repII_A100DRAFT_1057906All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria688Open in IMG/M
3300002070|JGI24750J21931_1019736All Organisms → cellular organisms → Bacteria936Open in IMG/M
3300002077|JGI24744J21845_10019761All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales1331Open in IMG/M
3300002459|JGI24751J29686_10019183All Organisms → cellular organisms → Bacteria1415Open in IMG/M
3300004156|Ga0062589_102850331All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria505Open in IMG/M
3300004157|Ga0062590_102878258All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria515Open in IMG/M
3300004463|Ga0063356_106268696All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria510Open in IMG/M
3300004479|Ga0062595_100130280All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales1416Open in IMG/M
3300005165|Ga0066869_10003791All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae1806Open in IMG/M
3300005171|Ga0066677_10188992All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1148Open in IMG/M
3300005178|Ga0066688_10143895All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1489Open in IMG/M
3300005184|Ga0066671_10065196All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1903Open in IMG/M
3300005343|Ga0070687_100021826All Organisms → cellular organisms → Bacteria3017Open in IMG/M
3300005466|Ga0070685_10642043All Organisms → cellular organisms → Bacteria768Open in IMG/M
3300005547|Ga0070693_100789908All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria703Open in IMG/M
3300005561|Ga0066699_10006475All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae5341Open in IMG/M
3300005618|Ga0068864_102675589All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria505Open in IMG/M
3300005764|Ga0066903_105690214All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria655Open in IMG/M
3300006038|Ga0075365_10354078All Organisms → cellular organisms → Bacteria1035Open in IMG/M
3300006047|Ga0075024_100773835All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria534Open in IMG/M
3300006048|Ga0075363_100026617All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales2960Open in IMG/M
3300006050|Ga0075028_100274448All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria932Open in IMG/M
3300006051|Ga0075364_10683827All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria700Open in IMG/M
3300006954|Ga0079219_11763484All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria577Open in IMG/M
3300007255|Ga0099791_10228023All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria881Open in IMG/M
3300009101|Ga0105247_10939907All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria671Open in IMG/M
3300009143|Ga0099792_10125836All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales1382Open in IMG/M
3300009162|Ga0075423_11353556All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria762Open in IMG/M
3300009162|Ga0075423_12267918All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria590Open in IMG/M
3300009551|Ga0105238_12521688All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria550Open in IMG/M
3300009553|Ga0105249_10117851All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales2519Open in IMG/M
3300010043|Ga0126380_11156541All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria664Open in IMG/M
3300010043|Ga0126380_12229750All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria507Open in IMG/M
3300010046|Ga0126384_12473495All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria504Open in IMG/M
3300010047|Ga0126382_10309865All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1190Open in IMG/M
3300010047|Ga0126382_11279836All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria662Open in IMG/M
3300010047|Ga0126382_11513488All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria618Open in IMG/M
3300010360|Ga0126372_10524288All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1119Open in IMG/M
3300010362|Ga0126377_12750713All Organisms → cellular organisms → Bacteria567Open in IMG/M
3300010366|Ga0126379_11482564All Organisms → cellular organisms → Bacteria → Proteobacteria784Open in IMG/M
3300010366|Ga0126379_13748625All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium509Open in IMG/M
3300010376|Ga0126381_104667463All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria528Open in IMG/M
3300010398|Ga0126383_12032832All Organisms → cellular organisms → Bacteria662Open in IMG/M
3300010398|Ga0126383_13565847All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium508Open in IMG/M
3300010400|Ga0134122_10499878All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1100Open in IMG/M
3300012198|Ga0137364_11343755All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria531Open in IMG/M
3300012201|Ga0137365_10289353All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1215Open in IMG/M
3300012206|Ga0137380_11328931All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria604Open in IMG/M
3300012351|Ga0137386_10117403All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1891Open in IMG/M
3300012354|Ga0137366_10409652All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria986Open in IMG/M
3300012358|Ga0137368_10360726All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria964Open in IMG/M
3300012360|Ga0137375_10041570All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales5103Open in IMG/M
3300012362|Ga0137361_10459751All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1169Open in IMG/M
3300012924|Ga0137413_10252499All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales1211Open in IMG/M
3300012948|Ga0126375_10261110All Organisms → cellular organisms → Bacteria1179Open in IMG/M
3300012957|Ga0164303_10455799All Organisms → cellular organisms → Bacteria806Open in IMG/M
3300012971|Ga0126369_11157269All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria863Open in IMG/M
3300012971|Ga0126369_12494437All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria602Open in IMG/M
3300012975|Ga0134110_10301834All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria691Open in IMG/M
3300012988|Ga0164306_10043720All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales2667Open in IMG/M
3300015201|Ga0173478_10159537All Organisms → cellular organisms → Bacteria906Open in IMG/M
3300015242|Ga0137412_10260475All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales1370Open in IMG/M
3300015371|Ga0132258_12418143All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales1316Open in IMG/M
3300015374|Ga0132255_101020017All Organisms → cellular organisms → Bacteria1242Open in IMG/M
3300016270|Ga0182036_10582033All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria896Open in IMG/M
3300016341|Ga0182035_11841433All Organisms → cellular organisms → Bacteria → Proteobacteria548Open in IMG/M
3300016357|Ga0182032_11769859All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria540Open in IMG/M
3300018077|Ga0184633_10325546All Organisms → cellular organisms → Bacteria780Open in IMG/M
3300018081|Ga0184625_10163560All Organisms → cellular organisms → Bacteria1163Open in IMG/M
3300018081|Ga0184625_10175643All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales1121Open in IMG/M
3300018082|Ga0184639_10177271All Organisms → cellular organisms → Bacteria1132Open in IMG/M
3300020580|Ga0210403_10985651All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria660Open in IMG/M
3300021363|Ga0193699_10017287All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales2613Open in IMG/M
3300021478|Ga0210402_12035147All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria500Open in IMG/M
3300021510|Ga0222621_1004599All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales2374Open in IMG/M
3300023102|Ga0247754_1139471All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales599Open in IMG/M
3300025900|Ga0207710_10602266All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales574Open in IMG/M
3300025911|Ga0207654_10674139All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria742Open in IMG/M
3300025932|Ga0207690_10945506All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria716Open in IMG/M
3300025944|Ga0207661_11346715All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria655Open in IMG/M
3300028608|Ga0247819_10433034All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria765Open in IMG/M
3300028710|Ga0307322_10224591All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria517Open in IMG/M
3300028719|Ga0307301_10051232All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales1271Open in IMG/M
3300028755|Ga0307316_10097610All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales1022Open in IMG/M
3300028787|Ga0307323_10136054All Organisms → cellular organisms → Bacteria885Open in IMG/M
3300028796|Ga0307287_10308298All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales598Open in IMG/M
3300028802|Ga0307503_10088070All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1293Open in IMG/M
3300028881|Ga0307277_10059549All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales1567Open in IMG/M
3300028885|Ga0307304_10496569All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria559Open in IMG/M
3300031123|Ga0308195_1057962All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Rhizobiales bacterium GAS113576Open in IMG/M
3300031226|Ga0307497_10445180All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria628Open in IMG/M
3300031546|Ga0318538_10249938All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria952Open in IMG/M
3300031573|Ga0310915_11205096All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria523Open in IMG/M
3300031713|Ga0318496_10655681All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria579Open in IMG/M
3300031751|Ga0318494_10816101All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria546Open in IMG/M
3300031770|Ga0318521_10115673All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales1493Open in IMG/M
3300031779|Ga0318566_10502931All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria593Open in IMG/M
3300031781|Ga0318547_10029590All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria2801Open in IMG/M
3300031793|Ga0318548_10001575All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales7275Open in IMG/M
3300031799|Ga0318565_10626679All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria516Open in IMG/M
3300031821|Ga0318567_10524854All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria672Open in IMG/M
3300031821|Ga0318567_10789070All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria538Open in IMG/M
3300031835|Ga0318517_10009671All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales3412Open in IMG/M
3300031845|Ga0318511_10544991All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria538Open in IMG/M
3300031894|Ga0318522_10177341All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria805Open in IMG/M
3300031894|Ga0318522_10429750All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria500Open in IMG/M
3300031896|Ga0318551_10744444All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria569Open in IMG/M
3300031912|Ga0306921_10393980All Organisms → cellular organisms → Bacteria1617Open in IMG/M
3300031912|Ga0306921_12254655All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria572Open in IMG/M
3300031942|Ga0310916_11177149All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria634Open in IMG/M
3300031959|Ga0318530_10262257All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria712Open in IMG/M
3300031981|Ga0318531_10277214All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria757Open in IMG/M
3300032001|Ga0306922_10624094All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1140Open in IMG/M
3300032001|Ga0306922_11579902All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria653Open in IMG/M
3300032010|Ga0318569_10405217All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria636Open in IMG/M
3300032043|Ga0318556_10533826All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria613Open in IMG/M
3300032044|Ga0318558_10631415All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria535Open in IMG/M
3300032052|Ga0318506_10450858All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria570Open in IMG/M
3300032054|Ga0318570_10431110All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria601Open in IMG/M
3300032063|Ga0318504_10111073All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1236Open in IMG/M
3300032091|Ga0318577_10370533All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria685Open in IMG/M
3300032159|Ga0268251_10296307All Organisms → cellular organisms → Bacteria669Open in IMG/M
3300032174|Ga0307470_11249833All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium606Open in IMG/M
3300034149|Ga0364929_0036820All Organisms → cellular organisms → Bacteria1461Open in IMG/M


 ⦗Top⦘

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil22.58%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil12.90%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil11.29%
Vadose Zone SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil9.68%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil5.65%
Groundwater SedimentEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment3.23%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil2.42%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Soil2.42%
Corn, Switchgrass And Miscanthus RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere2.42%
Populus EndosphereHost-Associated → Plants → Roots → Bulk Soil → Unclassified → Populus Endosphere2.42%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere2.42%
WatershedsEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds1.61%
Switchgrass RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere1.61%
Arabidopsis RhizosphereHost-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere1.61%
Populus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere1.61%
Corn RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere1.61%
Groundwater SedimentEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment0.81%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil0.81%
Terrestrial SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil0.81%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil0.81%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil0.81%
Agricultural SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil0.81%
Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil0.81%
Hardwood Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil0.81%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural → Soil0.81%
SoilEnvironmental → Terrestrial → Soil → Loam → Grasslands → Soil0.81%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil0.81%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere0.81%
Corn RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere0.81%
SedimentEnvironmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment0.81%
Switchgrass RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere0.81%
Arabidopsis Thaliana RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere0.81%
Corn RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere0.81%
AgaveHost-Associated → Plants → Phylloplane → Unclassified → Unclassified → Agave0.81%

Visualization
Powered by ApexCharts



Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
3300000655Forest soil microbial communities from Amazon forest - 2010 replicate II A100EnvironmentalOpen in IMG/M
3300002070Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4Host-AssociatedOpen in IMG/M
3300002077Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3Host-AssociatedOpen in IMG/M
3300002459Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6Host-AssociatedOpen in IMG/M
3300004156Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 1EnvironmentalOpen in IMG/M
3300004157Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - - Combined assembly of AARS Block 2EnvironmentalOpen in IMG/M
3300004463Combined assembly of Arabidopsis thaliana microbial communitiesHost-AssociatedOpen in IMG/M
3300004479Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAsEnvironmentalOpen in IMG/M
3300005165Soil and rhizosphere microbial communities from Laval, Canada - mgHMCEnvironmentalOpen in IMG/M
3300005171Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_126EnvironmentalOpen in IMG/M
3300005178Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_137EnvironmentalOpen in IMG/M
3300005184Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_120EnvironmentalOpen in IMG/M
3300005343Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaGEnvironmentalOpen in IMG/M
3300005466Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3L metaGEnvironmentalOpen in IMG/M
3300005547Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-3 metaGEnvironmentalOpen in IMG/M
3300005561Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_148EnvironmentalOpen in IMG/M
3300005618Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2Host-AssociatedOpen in IMG/M
3300005764Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)EnvironmentalOpen in IMG/M
3300006038Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5Host-AssociatedOpen in IMG/M
3300006047Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2013EnvironmentalOpen in IMG/M
3300006048Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3Host-AssociatedOpen in IMG/M
3300006050Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2014EnvironmentalOpen in IMG/M
3300006051Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4Host-AssociatedOpen in IMG/M
3300006954Agricultural soil microbial communities from Georgia to study Nitrogen management - GA ControlEnvironmentalOpen in IMG/M
3300007255Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_1EnvironmentalOpen in IMG/M
3300009101Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaGHost-AssociatedOpen in IMG/M
3300009143Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2EnvironmentalOpen in IMG/M
3300009162Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2Host-AssociatedOpen in IMG/M
3300009551Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaGHost-AssociatedOpen in IMG/M
3300009553Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaGHost-AssociatedOpen in IMG/M
3300010043Tropical forest soil microbial communities from Panama - MetaG Plot_26EnvironmentalOpen in IMG/M
3300010046Tropical forest soil microbial communities from Panama - MetaG Plot_36EnvironmentalOpen in IMG/M
3300010047Tropical forest soil microbial communities from Panama - MetaG Plot_30EnvironmentalOpen in IMG/M
3300010360Tropical forest soil microbial communities from Panama - MetaG Plot_6EnvironmentalOpen in IMG/M
3300010362Tropical forest soil microbial communities from Panama - MetaG Plot_22EnvironmentalOpen in IMG/M
3300010366Tropical forest soil microbial communities from Panama - MetaG Plot_24EnvironmentalOpen in IMG/M
3300010376Tropical forest soil microbial communities from Panama - MetaG Plot_28EnvironmentalOpen in IMG/M
3300010398Tropical forest soil microbial communities from Panama - MetaG Plot_35EnvironmentalOpen in IMG/M
3300010400Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2EnvironmentalOpen in IMG/M
3300012198Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_20_16 metaGEnvironmentalOpen in IMG/M
3300012201Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_40_16 metaGEnvironmentalOpen in IMG/M
3300012206Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_100_16 metaGEnvironmentalOpen in IMG/M
3300012351Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_100_16 metaGEnvironmentalOpen in IMG/M
3300012354Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_60_16 metaGEnvironmentalOpen in IMG/M
3300012358Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_100_16 metaGEnvironmentalOpen in IMG/M
3300012360Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_113_16 metaGEnvironmentalOpen in IMG/M
3300012362Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaGEnvironmentalOpen in IMG/M
3300012924Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300012948Tropical forest soil microbial communities from Panama - MetaG Plot_14EnvironmentalOpen in IMG/M
3300012957Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_207_MGEnvironmentalOpen in IMG/M
3300012971Tropical forest soil microbial communities from Panama - MetaG Plot_1EnvironmentalOpen in IMG/M
3300012975Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_11112015EnvironmentalOpen in IMG/M
3300012988Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_242_MGEnvironmentalOpen in IMG/M
3300015201Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S014-104B-1 (version 2)EnvironmentalOpen in IMG/M
3300015242Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Hybrid Assembly)EnvironmentalOpen in IMG/M
3300015371Combined assembly of cpr5 and col0 rhizosphere and soilHost-AssociatedOpen in IMG/M
3300015374Col-0 rhizosphere combined assemblyHost-AssociatedOpen in IMG/M
3300016270Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080EnvironmentalOpen in IMG/M
3300016341Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170EnvironmentalOpen in IMG/M
3300016357Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000EnvironmentalOpen in IMG/M
3300018077Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_170_b1EnvironmentalOpen in IMG/M
3300018081Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_30_b1EnvironmentalOpen in IMG/M
3300018082Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_170_b2EnvironmentalOpen in IMG/M
3300020580Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-MEnvironmentalOpen in IMG/M
3300021363Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L3c2EnvironmentalOpen in IMG/M
3300021478Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-MEnvironmentalOpen in IMG/M
3300021510Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5_coexEnvironmentalOpen in IMG/M
3300023102Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S184-509B-5EnvironmentalOpen in IMG/M
3300025900Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025911Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025932Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025944Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes)EnvironmentalOpen in IMG/M
3300028608Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Xylose_Day6EnvironmentalOpen in IMG/M
3300028710Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_380EnvironmentalOpen in IMG/M
3300028719Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_182EnvironmentalOpen in IMG/M
3300028755Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_356EnvironmentalOpen in IMG/M
3300028787Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_381EnvironmentalOpen in IMG/M
3300028796Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_141EnvironmentalOpen in IMG/M
3300028802Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 17_SEnvironmentalOpen in IMG/M
3300028881Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_116EnvironmentalOpen in IMG/M
3300028885Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_185EnvironmentalOpen in IMG/M
3300031123Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_196 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300031226Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 10_SEnvironmentalOpen in IMG/M
3300031546Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f23EnvironmentalOpen in IMG/M
3300031573Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111EnvironmentalOpen in IMG/M
3300031713Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f22EnvironmentalOpen in IMG/M
3300031751Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f24EnvironmentalOpen in IMG/M
3300031770Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f17EnvironmentalOpen in IMG/M
3300031779Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f22EnvironmentalOpen in IMG/M
3300031781Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f20EnvironmentalOpen in IMG/M
3300031793Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f21EnvironmentalOpen in IMG/M
3300031799Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f21EnvironmentalOpen in IMG/M
3300031821Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f20EnvironmentalOpen in IMG/M
3300031835Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f21EnvironmentalOpen in IMG/M
3300031845Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f18EnvironmentalOpen in IMG/M
3300031894Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f18EnvironmentalOpen in IMG/M
3300031896Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f19EnvironmentalOpen in IMG/M
3300031912Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)EnvironmentalOpen in IMG/M
3300031942Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF176EnvironmentalOpen in IMG/M
3300031959Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f24EnvironmentalOpen in IMG/M
3300031981Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f25EnvironmentalOpen in IMG/M
3300032001Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)EnvironmentalOpen in IMG/M
3300032010Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f22EnvironmentalOpen in IMG/M
3300032043Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f24EnvironmentalOpen in IMG/M
3300032044Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f20EnvironmentalOpen in IMG/M
3300032052Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f19EnvironmentalOpen in IMG/M
3300032054Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f23EnvironmentalOpen in IMG/M
3300032063Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f17EnvironmentalOpen in IMG/M
3300032091Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f25EnvironmentalOpen in IMG/M
3300032159Agave microbial communities from Guanajuato, Mexico - As.Ma.e (v2)Host-AssociatedOpen in IMG/M
3300032174Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_05EnvironmentalOpen in IMG/M
3300034149Sediment microbial communities from East River floodplain, Colorado, United States - 20_j17EnvironmentalOpen in IMG/M

Geographical Distribution
Zoom:     Powered by OpenStreetMap


 ⦗Top⦘

Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
AF_2010_repII_A100DRAFT_105790613300000655Forest SoilMRTLIALVSALLPSAAFADSVRHLSVPERLWGTWAPNAELCGDDKSTFVVSAKGYATLQATCTIQWVTETAGTAGPIY
JGI24750J21931_101973613300002070Corn, Switchgrass And Miscanthus RhizosphereMRTLIAFVSMVLSGSSLADTVRHLQVPERFWGTWARSPDLCRDKKSIIVVSEKGYVTPEASCEIQWLTETAGGS
JGI24744J21845_1001976133300002077Corn, Switchgrass And Miscanthus RhizosphereMRTLIAFVSMVLSGSSLADTVRHLQVPERFWGTWARSPDLCRDKKSIIVVSEKGYVTPEASCEIQWLTETAGG
JGI24751J29686_1001918333300002459Corn, Switchgrass And Miscanthus RhizosphereMRTLIAFVSMVLSGSSLADTVRHLQVPERFWGTWARSPDLCRDKKSIIVVSEKGYVTPEASCEIQWL
Ga0062589_10285033113300004156SoilMRILMTLVSVALSAPSLADTVRHLSVPARFWGTWAPSPDLCRDRKATVVVSEKGYVTSEASC
Ga0062590_10287825813300004157SoilMRILMTLVSVALSAPSLADTVRHLSVPARFWGTWAPSPDLCRDRKATVVVSEKGYVTSEASCEIQW
Ga0063356_10626869613300004463Arabidopsis Thaliana RhizosphereMRILMTLVSVALSAPSLADSVRHLSVPERFWGTWAPSPDLCRDRKATVVVSEKGYVTSEASCEIQW
Ga0062595_10013028033300004479SoilMRILMTLVSVALSAPSLADSVRHLSVPERFWGTWAPSPDLCRDRKATVVVSE
Ga0066869_1000379133300005165SoilMRTLIALVSMVLSGSSLADTVRHLQVPERFWGTWARSPDLCRDKKSIIVVSEKGYVTPEASCEI
Ga0066677_1018899243300005171SoilMRTVIFLVCVLLPGATFADSVRHLSVPERFWGIWAPSTDLCRDDKSIFVVSAKGYVT
Ga0066688_1014389513300005178SoilMRTVIFLVCVLLPGATFADSVRHLSVPERFWGIWAPSTDLCRDDKSIFVVSAKGYVTGASELHDSVAH*
Ga0066671_1006519613300005184SoilMRTVIFLVCVLLPGATFADSVRHLSVPERFWGIWVPSTDLCRDDKSIFVGASELHDSVAH
Ga0070687_10002182613300005343Switchgrass RhizosphereMRTLIAFVSMVLSGSSLADTVRHLQVPERFWGTWARSPDLCRDKKSIIVVS
Ga0070685_1064204313300005466Switchgrass RhizosphereMRILMTLVSVALSAPSLADSVRHLSVPERFWGTWAPSPDLCRDRKATVVV
Ga0070693_10078990823300005547Corn, Switchgrass And Miscanthus RhizosphereMRTLIALVSMVMSGSSFADSVRHLQVPERFWGTWARSPDLCRDKKSIIVVTEKGYVTPESSCEVQWLTETAGGSGPIY
Ga0066699_1000647543300005561SoilMRTVIFLVCVLLPGATFADSVRHLSVPERFWGIWAPSTDLCRDDKSIFVGASELHDSVAH
Ga0068864_10267558913300005618Switchgrass RhizosphereMRTLIALVSMVMSGSSFADSVRHLQVPERFWGTWARSPDLCRDKKSIIVVSEKGYVTPEA
Ga0066903_10569021423300005764Tropical Forest SoilMRTVIIFASVLLLGAALADVRHVSVPEWLWGTWAPSAELCRDDKSIIVMSEK
Ga0075365_1035407813300006038Populus EndosphereMRILMTLVSVALSAPSLADSVRHLSVPERFWGTWAPSPDLCRDRKA
Ga0075024_10077383513300006047WatershedsMRTLIVVVSVIMSGPSVADSVRHLSVPERFWGTWAPSTDLCRDKKSIFVVSEKGYVTSEASCAVQW
Ga0075363_10002661713300006048Populus EndosphereMRTLIALVSMFLSGSSLADSVRHLQVPERFWGTWARSPDLCRDKKSIIVVSEKGYVTPDA
Ga0075028_10027444813300006050WatershedsMRTVIVLVCVLLSGATLADSVRHLSVPERCWGTWAPSTDLCRDDKSV
Ga0075364_1068382723300006051Populus EndosphereMRTVIVLVSALLPSVALADSVRHLSVPERFWGIWAPDADLCRDHKAIFVVSAKGYVSSQTSCTVQWVTET
Ga0079219_1176348413300006954Agricultural SoilMRTVIVLVSALLSTEARADSVRHLNVPERFWGTWAPDADLCRDHKAIF
Ga0099791_1022802333300007255Vadose Zone SoilMRTVIVLVCVLLPGAALADSVRHLSVPEWCWGTWASSTDPCRDDKSVFVVSAKGY
Ga0105247_1093990733300009101Switchgrass RhizosphereMRTIIAFASALLSSAALADTVRHVTVPERLWGTWAPSADLCRDNKSTFVVSAKGYVTSQA
Ga0099792_1012583613300009143Vadose Zone SoilMRTFIVLVSVVLSGPSVADSVRHLSVPERFWGTWAPSPDLCRDKKSIFVVSEKGY
Ga0075423_1135355623300009162Populus RhizosphereMRTVIVLVSALLPSVALADSVRHLSVPERFWGTWAPDADLCRDHKAIFVVSAKGYVS
Ga0075423_1226791823300009162Populus RhizosphereMRTLIALAFGLLPSALLADSVRHLSVPERFWGTWAPSADLCGDDKVAFVVSAKGYTTSET
Ga0105238_1252168823300009551Corn RhizosphereMRTLIALVSMVLSGSSFADSVRHLQVPERFWGTWARSPDLCRDKKSIIVVSEKGYVTPEASCEIQWLTET
Ga0105249_1011785143300009553Switchgrass RhizosphereMTLVSVALSAPSLADSVRHLSVPERFWGTWAPSPDLCRDRKATVVVSEKGYVTSEASCEIQWLTE
Ga0126380_1115654123300010043Tropical Forest SoilMRTVIVLVSALLPSVSLADSVRHLSVPERFWGTWAPDADLCGDHKAIFVVSAKGYVTSQASC
Ga0126380_1222975023300010043Tropical Forest SoilMRAIITLTSVLLAGPSLADSVRHLSVPERFWGTWAPSAELCRDDKAIITVSPKGYTT
Ga0126384_1247349523300010046Tropical Forest SoilMRTIIAFASALVSSAALADSVRHLTVPERLWGTWAPSADLCRDSKATFVVSAKGYETSQASCTIQWVT
Ga0126382_1030986513300010047Tropical Forest SoilMRTVIALVCVLLPGVAAADSVRHLSVPERFWGTWAPSTDLCRDDKSVFVVSAKGYVT
Ga0126382_1127983613300010047Tropical Forest SoilMRTIIAFASVLVSSAALADSVRHLTVPERFWGTWAPSADLCRDNKSTFVVSAKGYV
Ga0126382_1151348813300010047Tropical Forest SoilMRTVFVLVSALLPSVSLADSVRHLSVPERFWGTWAPDAELCRDHKAIFVVSAKGYVTSQANCTVQWVTETAGAGG
Ga0126372_1052428833300010360Tropical Forest SoilMRTVIVLVSTLLPSVSLADSVRHLSVPERFWGTWAPESELCRDHKAIFVVSAKGY
Ga0126377_1275071313300010362Tropical Forest SoilMRTLIVVASALLTGPSLADSVRHLSVPDRFWGTWAPSAELCRDKKSI
Ga0126379_1148256423300010366Tropical Forest SoilMRTVIVFASVLLLGAALADVRHASVPEWLWGTWAPSAELCRDDKSIIVMSEKSYMTSQ
Ga0126379_1374862513300010366Tropical Forest SoilMRTIIAFASALLSNASLADTVRHPAVPEQFWGTWAPSADVCRDGKSTLVL
Ga0126381_10466746313300010376Tropical Forest SoilMRIVFVLASALLSGSALADTVRHPSVPERFWGTWAPTADLCRDDKSIIIVSAKGYV
Ga0126383_1203283223300010398Tropical Forest SoilMEDKAMRTIIALACVFLSNPSLADTVRHPGVPERVWGTWAPSADLCRDDKSTVIVSGKSYVT
Ga0126383_1356584723300010398Tropical Forest SoilMRTVFVLTSALLSGAALADTVRYPSVPERFWGTWAPSADLWRDDKSIIVVSAKGYV
Ga0134122_1049987813300010400Terrestrial SoilMRTLIAFVSMVLSGSSLADTVRHLQVPERFWGTWARSPDLCRDKKSIIVVSEKGYVTPEASCEIQWLTETAGGSGPYLLSPYALHQPGRAG*
Ga0137364_1134375513300012198Vadose Zone SoilMRTIIAFASALVSSAALADSVRHLTVPERLWGTWAPSADLCRDSKSTFVVSAKGYETSQA
Ga0137365_1028935313300012201Vadose Zone SoilMRTVIFLVCVLLPGATFADSVRHLSVPERFWGIWAPSTDLCRDDKSIFVVSAKGYVTAQASCTIQW
Ga0137380_1132893123300012206Vadose Zone SoilMRTLIALVSAFLPSTSLADSVRHLSVPERFWGTWAPSADLCTDDKSVFVVSAKGYTTSDASCTIQWVT
Ga0137386_1011740343300012351Vadose Zone SoilMRTVIFLVCVLLPGATFADSVRHLSVPERFWGIWAPSTDLCRDDKSIFVVSAKGYMTAQANCKIQWLTETAGGDRPIYYAHMRWSNPAATERSRWK*
Ga0137366_1040965223300012354Vadose Zone SoilMRTIIAFASALVSSAALADSVRHLTVPERLWGTWAPSADLCRDSKSTFVVSAKGYETSQASCTIQWVT
Ga0137368_1036072623300012358Vadose Zone SoilMRTIIAFASALVSSAALADSVRHLTVPERLWGTWAPSADLCRDSKSTFVVSAKGYETSQASCTI
Ga0137375_1004157013300012360Vadose Zone SoilMRTIIAFASALVSSAALADSVRHLTVPERLWGTWAPSADLCRDSKSTFVVSAKGYET
Ga0137361_1045975133300012362Vadose Zone SoilMIVALAYLFLSSASLADVVRHSGVPEHFWGRWAPSANLCRDDKSIVVVSERGYVTAQE
Ga0137413_1025249913300012924Vadose Zone SoilMRTLIVLVLVVLSGPSVADSVRHLSVPERFWGTWAPSPDLCRDKKSIFVVSEKG
Ga0126375_1026111023300012948Tropical Forest SoilMRMFIVVASALLTGPSLADSVRHLSVPERFWGTWAPTAELCRDKAAIIAVSSKGY
Ga0164303_1045579913300012957SoilMRTFIALVSMVLSGSSFADSVRHLQVPERFWGTWARSPDLCRDKKSIIVVTEKGYVTPES
Ga0126369_1115726913300012971Tropical Forest SoilMRTVIVLVSALLPSVSLADSVRHLSVPERFWGTWAPDADLCGDHKAIFVVSAKG
Ga0126369_1249443723300012971Tropical Forest SoilMRTVIAFVAALLASASLADSVRHQSVPERFWGTWAPSADLCSDSKSTFVVSAKEYVTS
Ga0134110_1030183423300012975Grasslands SoilMLLPGATFADSVRHLSVPERFWGIWAPSTDLCRDDKSIFVVSAKGYVTAQANCTIQWL
Ga0164306_1004372033300012988SoilMRTLIALVSMALSGSSFADSVRHLQVPERFWGTWARSPDLCRDKKSIIVVSEKGYVTPDASCEIQWLT
Ga0173478_1015953723300015201SoilMRTLIAFVSMVLSGSSLADTVRHLQVPERFWGTWARSPDLCRDKNSIIVVSEKGYVTPDASCEIQWLTET
Ga0137412_1026047513300015242Vadose Zone SoilMRTFIVLVSVVLSGPSVADSVRHLSVPERFWGTWAPSPDLCRDKKSIFVVSEYSLGTVF
Ga0132258_1241814333300015371Arabidopsis RhizosphereMRTLIAFVSMVLSGSSLADTVRHLQVPERFWGTWARSPDLCRDKKSI
Ga0132255_10102001723300015374Arabidopsis RhizosphereMRILIAVASALLTGPSLADSVRHLSVPERFLGTWAPSADLCRDKKSIIAVSSKG
Ga0182036_1058203323300016270SoilMRTIITFVAALLASASLADSVRHQSVPERFWGTWAPSADLCSDSKSTFVVSAKEYV
Ga0182035_1184143323300016341SoilMRTVFVLASLLSGSALADTVRHPSVPERFWGTWAPTADLCRDDKSIIIVSAK
Ga0182032_1176985913300016357SoilMRTIIAFASALLSSASLADTVRHLIVPERLWGTWAPSADLCRDGKSTLVVSAKGY
Ga0184633_1032554623300018077Groundwater SedimentMRTLIALVSMVLSGSSLADSVRHLQVPERFWGTWARSPDLCRDKKSIIVVTEKGYVTPESSCEIQWLTETAGGSG
Ga0184625_1016356013300018081Groundwater SedimentMRTLIALVSMVLSGSSLADSVRHLQVPERFWGTWARSPDLCRDKKSIIV
Ga0184625_1017564313300018081Groundwater SedimentMRTLIVVFVSVVLSGPSVADSVRHLSVPERFWGTWAPSPDLCHDKKSIFVVSEKGYVT
Ga0184639_1017727113300018082Groundwater SedimentMRTLIALVSMVLSGSSLADTVRHLQVPERFWGTWARSPDLCRDKKSIIVVSEKGYVTPEASCEIQWLTETAGGR
Ga0210403_1098565113300020580SoilMRIIIAFAFVLLSVAALADSVRHVTVPERLWGTWAPSADLCSDNKSTFVVSA
Ga0193699_1001728733300021363SoilMRTLIVLVSVVLSGPSVADSVRHLSVPERFWGTWAPSPDHCRDKKSIFVV
Ga0210402_1203514713300021478SoilMRTVIVLACVLLSGATLADSVRHLSVPERCWGTWAPSTDLCRDDK
Ga0222621_100459913300021510Groundwater SedimentMRTLIVVLVSVVLSGPSVADSVRHLSVPERFWGTWAPSPDLCRDKKSIFVVSEKGYV
Ga0247754_113947113300023102SoilMRILMTLVSVALSAPSLADSVRHLSVPERFWGTWAPSPDLCRDRKATVVVSEKGYVTSEASCEIQ
Ga0207710_1060226613300025900Switchgrass RhizosphereMRILMTLVSVALSAPSLADSVRHLSVPERFWGTWAPSPDLCRDRKATVVVS
Ga0207654_1067413923300025911Corn RhizosphereMRTLIAFVSMVLSGSSLADTVRHLQVPERFWGTWARSPDLCRDKKSIIVVSEKGYVTPEASCEIQWLTET
Ga0207690_1094550623300025932Corn RhizosphereMRTLIALVSMALSGSSFADSVRHLQVPERFWGTWARSPDLCRDKKSIIVVTEKGYV
Ga0207661_1134671523300025944Corn RhizosphereMRTLIAFVSMVLSGSSLADTVRHLQVPERFWGTWARSPDLCRDKKSIIVVSEKGYVTPEASCE
Ga0247819_1043303423300028608SoilMRTLIAFVSMVLSGSSLADTVRHLQVPERFWGTWARSPDLCRDKKSIIVVSEKGYVTPEASCEIQWLTETAGGSGPIY
Ga0307322_1022459113300028710SoilMRTLVALVSMVLSGSSLADSVRHLQVPERFWGTWARSPDLCRDKKSIIVVTEKGYVTPESSCEIQWLTETAGGSGPI
Ga0307301_1005123233300028719SoilMRTLIALVSMVLSGSSLADSVRHLQVPERFWGTWARSPDLCRDKKSII
Ga0307316_1009761023300028755SoilMRTLIVLVSVVLSGPSVADSVRHLSVPERFWGTWAPSPDLCRDKKSIFVVSEKGYVTSEA
Ga0307323_1013605413300028787SoilMRTLIVLVSVVLSGPSVADSVRHLSVPERFWGTWAPSPDLCRDKKS
Ga0307287_1030829823300028796SoilMRTLIVVLVSVVLSGPSVADSVRHLSVPERFWGTWAPSPDLCRNKKSIFVV
Ga0307503_1008807023300028802SoilMRTLVALVSMVLSGSSLADTVRHLQVPERFWGTWARSPDLCRDKKSIIVVTEKGYVTPESSCEIQWLTETAAAVGPSTQPICVAPAWPRRMRRQN
Ga0307277_1005954933300028881SoilMRTLIVVLVSVVLSGPSVADSVRHLSVPERFWGTWAPSPDLCRNKK
Ga0307304_1049656913300028885SoilMRTLIALVSMVLSGSSLADSVRHLQVPERFWGTWARSPDLCRDKKSIIVVTEKGYVTPESSCEIQWLTETAGGSGPI
Ga0308195_105796213300031123SoilKNMRTLIVLVSVVLSGPSVADSVRHLSVPERFWGTWAPSPDLCRDKKSIFVVSEKGYVTS
Ga0307497_1044518023300031226SoilMRTLIIVVSVVLSGPSVADSVRHLSVPERFWGTWAPSPDLCRDKKSIF
Ga0318538_1024993813300031546SoilMRAVIAFAATLLASASLADSVRHTSVPERFWGTWAPSADLCSDSKSTFVVSAKEYVTSQESCAI
Ga0310915_1120509613300031573SoilMRTVFVLASALLSGSALADTVRHPRVPERFWGTWAPTADLCRDDK
Ga0318496_1065568123300031713SoilMRTVIAFVAALLASASLADSVRHQSVPERFWGTWAPSADLCSDRKSTFVVSAKEYVTSQE
Ga0318494_1081610113300031751SoilMRTVFVLASALLSGSALADTVRHPRVPERFWGTWAPTADLCRDDKSI
Ga0318521_1011567333300031770SoilMRTVLVLASALLSGSALADTVRHPRVPERFWGTWAPTADLCRDDKSI
Ga0318566_1050293123300031779SoilMRMRTIIAFASVLVSSAALADSVRHLTVPERFWGTWAPSADLCRDNKSTFVVSAKGYVTA
Ga0318547_1002959063300031781SoilMRTLIALVSALLPNAALADSVRHLSVPERLWGTWAPNAELCGDDKSKFVVSAKGYATSQATSTI
Ga0318548_1000157513300031793SoilMRMRTIIAFASVLVSSAALADSVRHLTVPERFWGTWAPSADLCRDNKSTFVV
Ga0318565_1062667923300031799SoilMRIIIAFACVLLSGGALADSVRHLSVPERIWGTWAPSADLCRDSKST
Ga0318567_1052485423300031821SoilLGVPTVRANIMRAVIAFVAALLASASLADSVRHQSVPERFWGTWAPSADLCSDRKSTFVVSAKEYVTSQESCAIQ
Ga0318567_1078907013300031821SoilMRAVIAFAATLLASASLADSVRHTSVPERFWGTWAPSADLCSDSKSTFVVSAKEYVTSQESCAIQW
Ga0318517_1000967113300031835SoilMRIIIAFACVLLSGGALADSVRHLSVPERIWGTWAPSADLCRDSKSTFVVSAKGYET
Ga0318511_1054499113300031845SoilMRAVIAFAATLLASASLADSVRHTSVPERFWGTWAPSADLCSDSKSTFVVSAKEYVTSQESCAIQWVTETA
Ga0318522_1017734113300031894SoilMRTIITFVAALLASASLADSVRHQSVPERFWGTWAPSADLCSDSKSTFVVSAKEYVTSQE
Ga0318522_1042975013300031894SoilMRTVFVLASALLSGPALADTVRHPSVPERFWGTWAPTADLCRDDKSIIVVSAKGYVTAQASCTVQW
Ga0318551_1074444413300031896SoilMRTVLVLASALLSGSALADTVRHPRVPERFWGTWAPTADLCRDDKSIIIVSAKGYVTAQASCTVQW
Ga0306921_1039398043300031912SoilMRTVFLLASALLSGSALANTVRHPTVPERFWGTWAPTTDLCRDDKSIIVVSAKAY
Ga0306921_1225465513300031912SoilMRTVFVLAWTLLSESALADTVRHPSVPERFWGTWAPTADLCRDDKSIIMVSAKGYVTAQASCMVQ
Ga0310916_1117714913300031942SoilLGVPTVRANIMRTIITFVAALLASASLADSVRHQSVPERFWGTWAPSADLCSDSKSTFVVSAKEYVTS
Ga0318530_1026225713300031959SoilMRTIITFVAALLASASLADSVRHQSVPERFWGTWAPSADLCSDSKSTFVVSA
Ga0318531_1027721413300031981SoilMRTVIAFVAALLASASLADSVRHQSVPERFWGTWAPSADLCSDSKSTFVVSAKEYVTSQE
Ga0306922_1062409433300032001SoilMRTVIALVSALLPSAALADTVRHQSAPERLWGTWAPNAELCDDDKSVFVVSAKEYTTSQTKCSIQWVTET
Ga0306922_1157990223300032001SoilMRIIIAFASVLLSGAALADSVRHLSVPERLWGTWAPSADLCSDSKSTF
Ga0318569_1040521713300032010SoilMRTVFVLASALLSGPALADTVRHPSVPERFWGTWAPTADLCRDD
Ga0318556_1053382613300032043SoilMRTLIALVSALLPNAALADSVRHLSVPERLWGTWAPNAELCGDDKSKFVVSAKGYATSQATCTIQWVTETAG
Ga0318558_1063141513300032044SoilMRTLIALVSALLPNAALADSVRHLSVPERLWGTWAPNAELCGDDKSKFVVSAKGYA
Ga0318506_1045085813300032052SoilMRIIIAFACVLLSGGALADSVRHLSVPERIWGTWAPSADLCRDSKSTFV
Ga0318570_1043111023300032054SoilMRAVIAFVAALLASASLADSVRHQSVPERFWGTWAPSADLCSDSKSTFVVSAKEY
Ga0318504_1011107323300032063SoilMRAVIAFVAALLASASLADSVRHQSVPERFWGTWAPSADLCSDSKSTFVVSAKEYVTSQE
Ga0318577_1037053323300032091SoilMRTLIALVSALLPNAALADSVRHLSVPERLWGTWAPNAELCGDDKSKFVVSAKGYATSQATCT
Ga0268251_1029630723300032159AgaveMRAIITLTSVLLAGPSLADSVRHLSVPERFWGIWAPSAELCRDDKAV
Ga0307470_1124983313300032174Hardwood Forest SoilMRTLIALVSMVLSGSSLADTVRHLQVPERFWGTWARSPDLCRDKKSII
Ga0364929_0036820_1_2193300034149SedimentMRTLIALVSMVLSGSSLADSVRHLQVPERFWGTWARSPDLCRDKKSIIVVSEKGYVTPEASCEIQWLTETAGG

 ⦗Top⦘


Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.